BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] (910 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1] gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1] Length = 912 Score = 1021 bits (2640), Expect = 0.0, Method: Composition-based stats. Identities = 570/911 (62%), Positives = 712/911 (78%), Gaps = 5/911 (0%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M + S I VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MADQDSSVSGGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS Sbjct: 61 MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGDP AA RYTECRLQK AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG Sbjct: 121 VDGDPAAAMRYTECRLQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D +A+++NP + L+ L+EII GPDFPTG +ILGR+GI++ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGS+V+RG +E+ RE ++V+EIPYQVNKA M+EKIAELVREKRI I+D+ Sbjct: 241 AYETGRGSVVMRGKVEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G RVVIELK+ A ADVILNQLYR+++LQ+ F NMVALNG +PE+ L +LK Sbjct: 301 RDESDRLGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+AFREEV+ RRT++LL KARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LMQ Sbjct: 361 AFIAFREEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQ 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R+W A D+ LI LIDD +T+ DGT LSE Q RAIL+LRL RLT LGRD+I +ELN Sbjct: 421 RNWPAMDVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 LG EI + L+IL SR R+ II++ELL +++E TPR+T IVEG D+EDED I REDMV Sbjct: 481 LGEEIADYLEILRSRPRIQQIIREELLEIRNEFATPRKTEIVEGGADLEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VY Sbjct: 541 VTVSHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+G P +RGKAL+N+L L GE+I++IMP PE+E SW +L V+FAT G VRR Sbjct: 601 KMKVWRLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF Q+NR+GKIAMKLD D I+ V TCT+ +D+LLTT GQC+RFP++ +RVFAGR Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NSVGVRGI+LA+ D +ISM+I+ H +AD +ER+ Y+K R + + ++ Sbjct: 721 NSVGVRGINLAEDDHLISMSILRHFEADAEERVTYLKRRRLMRG--ETEDAGVEDEAEEA 778 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 EG++S ER E+ EQ ILTVSE G+GKRTSS+++R++ R GKGI A V++ N G Sbjct: 779 GAEGHLSLERYAEMSAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRN--G 836 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D+DQI+LV+D G LIR PV+ IR+A RAT+GV++F+TA+DE+VV+VER+ E Sbjct: 837 PLVAAFPVEDSDQIMLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERVSE 896 Query: 900 SEIVDEAESTE 910 E D +E Sbjct: 897 DEDGDTGAESE 907 >gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] Length = 925 Score = 1018 bits (2631), Expect = 0.0, Method: Composition-based stats. Identities = 551/911 (60%), Positives = 701/911 (76%), Gaps = 7/911 (0%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ + I +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MTDQENSTPPGGVPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS Sbjct: 61 MNENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTECRL+K AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG Sbjct: 121 IDGDRAAAMRYTECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D +AV+ NP + + LM+I+ GPDFPTG +ILGR+GI++ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY +GRGS+V+R +E+ DR ++V+EIPYQVNK++M+EKIAE VR+KRI I+D+ Sbjct: 241 AYESGRGSVVMRSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G RVVIELKR A DV+LNQLYRY+ LQ+ F NMVALNG KPE+ L ILK Sbjct: 301 RDESDRSGMRVVIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF++FREEVV RRTK+LL KARDRAH+LVGL IAVAN+DEV+ +IR +P+P TAR +LM+ Sbjct: 361 AFISFREEVVQRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++ LI LIDD + + DGT LSE Q RAIL+LRL RLT LGRD+I +EL+ Sbjct: 421 RDWPARDVEPLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 +G EI + LDIL SR+R+ I++ E+L +K+E TPR+T IV+G D +DED I REDMV Sbjct: 481 IGAEISDFLDILRSRARIQDIVRGEMLEIKEEFATPRKTEIVDGGADFDDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G Y Sbjct: 541 VTVSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+G P +RGKALIN+L L QGE+I++IMP PEDE SW NL V+F+T G VRR Sbjct: 601 KMKVWRLPLGGPISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF QINR+GKIAMKL+ D I++V TC++ +D++LTT GQC+RFP+ +RVFAGR Sbjct: 661 NKLSDFTQINRNGKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NSVGVRGI LA GD+VISM I+ H DA+ +ER ++K A R G+ +E Sbjct: 721 NSVGVRGIRLADGDKVISMQILHHMDAEAEERTAFLKMSRALR----GEADENAGSDETG 776 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +V+ +S+ER E+ EQ ILT+SE G+GKRTSS+++R++ R GKGI A V++ N G Sbjct: 777 AVDAGLSQERYAEMSAAEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERN--G 834 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV+ FPV ++DQI+LV++ G LIR PV+ IRIA RAT+GV++F TA E VV+VE I E Sbjct: 835 GLVSSFPVEESDQIMLVTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGISE 894 Query: 900 SEIVDEAESTE 910 + ++ ++ E Sbjct: 895 VDDEEDVDAVE 905 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 94/298 (31%), Gaps = 56/298 (18%) Query: 528 EDEDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582 E+ + + G V+R LS + R GK + + D D + ++ Sbjct: 633 SIMPLPEDEESWANLDVMFSTVRGTVRRNKLSDFTQINRNGKI--AMKLEDGDGIVNVAT 690 Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642 S H V+ ++ G + V + R + + L G+++ ++ ++ Sbjct: 691 CSEHDDVMLTTAAGQCIRFPVGDVR--VFAGRNSVGVRGIRLADGDKVISMQILHHMDAE 748 Query: 643 WNNLY-------------------------------------------VVFATKHGNVRR 659 ++ +++G +R Sbjct: 749 AEERTAFLKMSRALRGEADENAGSDETGAVDAGLSQERYAEMSAAEQIILTLSENGYGKR 808 Query: 660 NKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 ++ R G AM + ++S + + I+L T GQ +R P+ IR Sbjct: 809 TSSFEYRVTGRGGKGITAMAVTERNGGLVSSFPVEESDQIMLVTNGGQLIRCPVDGIR-I 867 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 AGR + GV A G+ V+++ + D + D + S Sbjct: 868 AGRATQGVIVFKTADGENVVAVEGISEVDDEEDVDAVEDGGEGGDSAAPDAAPSDGES 925 >gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] Length = 938 Score = 1013 bits (2619), Expect = 0.0, Method: Composition-based stats. Identities = 549/905 (60%), Positives = 692/905 (76%), Gaps = 5/905 (0%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 8 DNSTPTDGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHEN 67 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGD Sbjct: 68 GYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGD 127 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 P AA RYTECRL+K AH LLDD+ K+TVDF+ NYD S EPVVL A++PN+LVNG GGIA Sbjct: 128 PAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIA 187 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGEV+D +AV++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T Sbjct: 188 VGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMILGRSGIRSAYET 247 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RGSIV+R +E+ DR ++VTEIPYQVNK+ M+EKIAELVR+KRI I+D+RDES Sbjct: 248 ARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRDES 307 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIELKR A DVILNQLYR++ LQ+ F N+VALNG KPE+ L +L+AFV+ Sbjct: 308 DRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALNGGKPEQMNLSDMLRAFVS 367 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FREEV+ RRT+YLL KARDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W Sbjct: 368 FREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMERNWP 427 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 A D++ LI LIDD + + DGT LSE Q RAIL+LRL RLT +GRD+I ELN +G E Sbjct: 428 AKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAE 487 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + L+IL SR+R+ I++ E+L +K E TPRRT I+EG D ++ED I REDMVVTVS Sbjct: 488 ISDYLEILRSRARIQEIVRNEMLEIKQEFATPRRTEIIEGGPDFDEEDLIQREDMVVTVS 547 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KV Sbjct: 548 HGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKV 607 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 WRLP+G P +RGKALIN+L L QGE+IT+I+P PEDE SW NL V+FAT G +RRNKLS Sbjct: 608 WRLPLGGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNKLS 667 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF+ INR+GKIAMKL+ D I+ V+TC++ +D++LTT GQC+RFP++ +RVFAGRNSVG Sbjct: 668 DFVNINRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNSVG 727 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D+VISM I+ H D +ER Y+K A R E + V G Sbjct: 728 VRGIRLADEDRVISMQILHHIDVSAEERAAYLKLSRAMRGEA---DENGNGADEEGVVAG 784 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ +ER ++ EQ ILT+SE G+GKRTSS+++R++ R GKGI A V+ N G L++ Sbjct: 785 DLPQERYAQMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRN--GGLIS 842 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 FPV D+ QI+LV+D G LIR PV+ IRIA RAT+GV++F TA DE+VV+VE I E + Sbjct: 843 SFPVEDSHQIMLVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISEVDED 902 Query: 904 DEAES 908 D E Sbjct: 903 DVLED 907 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 12/256 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D D V+ ++ G R P++ R G +R D + + H + Sbjct: 692 DTCSEHDDVMLTTNFGQCIRFPVTDVR-VFAGRNSVGVRGIRLADEDRVISMQILHHIDV 750 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 K G +++ + + M E ++ Sbjct: 751 SAEERAAYLKLSRAMRGEADENGNGADEEGVVAGDLPQERYAQMSAAEQI-------ILT 803 Query: 651 ATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 +++G +R ++ R G AM ++S ++S + I+L T GQ +R Sbjct: 804 ISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRNGGLISSFPVEDSHQIMLVTDGGQLIR 863 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 P+ IR AGR + GV A ++V+++ + D D Sbjct: 864 CPVDGIR-IAGRATQGVIVFKTAADEKVVAVEGISEVDEDDVLEDGLEGEAEGSAEPGVS 922 Query: 768 DTEEITSLKNDSSVEG 783 D T +++ E Sbjct: 923 DAGNDTIDGDETPPEA 938 >gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419] gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419] Length = 931 Score = 1013 bits (2619), Expect = 0.0, Method: Composition-based stats. Identities = 632/909 (69%), Positives = 757/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL SV+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS+KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +++ +K G +R+ DF R K E+++ + I+L Sbjct: 798 EQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + D D + + + Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERISEPDGDEEIEAVGAEGVM 916 Query: 760 AQRRLISGDTEEITS 774 AQ L T Sbjct: 917 AQPELPPEPTSTPEE 931 >gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] Length = 940 Score = 1013 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 552/895 (61%), Positives = 690/895 (77%), Gaps = 5/895 (0%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 9 DNSTPSGGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHEN 68 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGD Sbjct: 69 GYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGD 128 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 P AA RYTECRL+K AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG GGIA Sbjct: 129 PAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIA 188 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGEV+D +A+++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T Sbjct: 189 VGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYET 248 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS+ +R E+ DR ++VTEIPYQVNK+ M+EKIAE+VR+KR+ I+D+RDES Sbjct: 249 GRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDES 308 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIELKR A DV+LNQLYR++ LQ+ F NMVALNG KPE+ L +LKAFVA Sbjct: 309 DRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVA 368 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FREEV+ RRT+YLL K RDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W Sbjct: 369 FREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWP 428 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 A D++DLI LIDD + + DGT LSE Q RAIL+LRL RLT +GRD+I ELN +G E Sbjct: 429 ARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAE 488 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL SR+R+ I++ E+L +++E TPRRT I+EG D ++ED I REDMVVTVS Sbjct: 489 ISDYLDILRSRARIQEIVRNEMLEIREEFATPRRTEIIEGGADFDEEDLIQREDMVVTVS 548 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KV Sbjct: 549 HGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKV 608 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 WRLP+G P +RGKAL+N+L L QGE+IT+I+P PEDE +W NL V+FAT G VRRNKLS Sbjct: 609 WRLPLGGPTSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLS 668 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF+ INR+GKIAMKL+ D I+ V+TC++ +DI+LTT GQC+RFP + +RVFAGRNSVG Sbjct: 669 DFVNINRNGKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVG 728 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA GD++ISM I+ H D D +ER Y+K A R E + D V G Sbjct: 729 VRGIRLADGDRIISMQILHHIDVDAEERAAYLKLSRAMRGEA---DENGAAADEDGVVAG 785 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +S+ER E+ EQ ILT+SE G+GKRTSS+++R++ R GKGI A V+ N G L+A Sbjct: 786 ELSQERYAEMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRN--GGLIA 843 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 FPV D+DQI+LV+D G LIR PV IRIA RAT+GV+IF TA+DE+VV+VE I Sbjct: 844 SFPVEDSDQIMLVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGIS 898 Score = 50.9 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 4/140 (2%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQ 704 ++ +++G +R ++ R G AM ++ R+ L ++ + I+L T GQ Sbjct: 802 ILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRNGGLIASFPVEDSDQIMLVTDGGQ 861 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R P+ IR AGR + GV A+ ++V+++ + D D + + Sbjct: 862 LIRCPVEGIR-IAGRATQGVIIFKTAEDEKVVAVEGISEVDEDEELVEGELPEGGGADGD 920 Query: 765 ISGDTEEITSLKNDSSVEGN 784 + SS Sbjct: 921 AGSGEGGDGEAPDSSSGSDE 940 >gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] Length = 927 Score = 1013 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 630/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A+ID+P I+L LM+I+ GPDFPTGA+ILGR GI+ A Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALILGRAGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI++ L+ILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT+ +D++LTT +GQC+RFP+S +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAI+ H +A+ ER Y+K +A+RR +G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G +S ER +ELK +EQF+LT+SE+GFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 ANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV NDQI+LVSD G LIRVPV+ IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVEHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEAES 908 + DE E Sbjct: 901 PDGEDEIEE 909 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF R K E+++ + I+L Sbjct: 798 EQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPVEHNDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + D + + + Sbjct: 858 SDGGQLIRVPVDGIR-LASRATKGVTIFSTAKDEKVVSVERISEPDGEDEIEEIVTAGEA 916 Query: 760 AQRRLISGDTE 770 + E Sbjct: 917 IAAEPPADAEE 927 >gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021] gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021] Length = 931 Score = 1012 bits (2615), Expect = 0.0, Method: Composition-based stats. Identities = 633/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 Score = 54.4 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +++ + G +R+ DF R K E+++ + I+L Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + D D + + + Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916 Query: 760 AQRRLISGDTEEITS 774 A+ T Sbjct: 917 AEPESPPDTTSTPDE 931 >gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] Length = 931 Score = 1011 bits (2614), Expect = 0.0, Method: Composition-based stats. Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 Score = 54.4 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +++ + G +R+ DF R K E+++ + I+L Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + D D + + + Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916 Query: 760 AQRRLISGDTEEITS 774 A+ T Sbjct: 917 AEPESPPDTTSTPDE 931 >gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup] gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup] Length = 927 Score = 1011 bits (2613), Expect = 0.0, Method: Composition-based stats. Identities = 591/913 (64%), Positives = 717/913 (78%), Gaps = 3/913 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTPHPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILG +G++ A Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGLSGVRAA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVEIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELK+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWPAMDVAPLIKLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + LDIL+SR R++ I+K EL ++++E TPRRT G +ME ED I EDMVV Sbjct: 481 GVDIADYLDILASRVRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+Q+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRN Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD---TEEITSLKN 777 SVGVRGI+LAKGD+VISM I+ H +A ER Y+K + +RR D + +T + Sbjct: 721 SVGVRGINLAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEE 780 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK E Sbjct: 781 DGGAETELTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAE 840 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IG LVA FPV DQI+LVSD G LIRVPV IR A R+TKGV IF+TAK ERVVSVERI Sbjct: 841 IGKLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERI 900 Query: 898 RESEIVDEAESTE 910 E E + E Sbjct: 901 SEPEDDTSSLDDE 913 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 9/246 (3%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C +D+V+T + G R P+ R G+ GV + + ++ Sbjct: 686 SVETCTEHDDVVLT-TANGQCIRFPVVDVRV--FAGRNSVGVRGINLAKGDKVISMTILE 742 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 V S Y ++V I L G T + E Sbjct: 743 HVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGAETELTDERYAELHAREQM 802 Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702 ++ ++ G +R+ +F I K ++++ ++ I+L + Sbjct: 803 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDG 862 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + AKG++V+S+ + + D + S Sbjct: 863 GQLIRVPVEGIRT-AGRSTKGVTIFNTAKGERVVSVERISEPEDDTSSLDDEGEKHSDTV 921 Query: 763 RLISGD 768 + Sbjct: 922 DMSEEK 927 >gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1] gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1] Length = 913 Score = 1010 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 556/912 (60%), Positives = 694/912 (76%), Gaps = 8/912 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR+GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+D Sbjct: 241 SAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + L+IL SR+R+ I+K EL +VK E TPR+T IVE ++EDED I REDM Sbjct: 481 KLAVEIADYLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVR Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+L+ GD+VIS++I+ H +A ER Y+K A RR +G+ E Sbjct: 721 RTSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEV 780 Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + EG+ +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 781 EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNG 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVSV Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898 Query: 895 ERIRESEIVDEA 906 ERI E++ D Sbjct: 899 ERIPETDDGDNG 910 >gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] Length = 931 Score = 1010 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +++ + G +R+ DF R K E+++ + I+L Sbjct: 798 EQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + D D + + + Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916 Query: 760 AQRRLISGDTEEITS 774 A+ L + T Sbjct: 917 AEPELPTDTTSTPDE 931 >gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1] gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1] Length = 931 Score = 1009 bits (2609), Expect = 0.0, Method: Composition-based stats. Identities = 592/911 (64%), Positives = 719/911 (78%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + GI VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLNPHPERDVMAGIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C+A+IDNPDI LD ++EII GPDFPTG +ILG +G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+T R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I +D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWPAADVAPLIKLIDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L IL+SRSR++ IIK EL +++ TPRRT G +M+ ED I EDMVV Sbjct: 481 GVDITDYLHILASRSRIMSIIKDELNVLREAFATPRRTVFGFGSAEMDCEDLIAPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPLS YRAQRRGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G VYK Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+ W+ L V+FAT G VRRN Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+QINR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRN Sbjct: 661 KLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779 SVGVRGI+LA D+VISM I+ H +A ER Y+K + +RR D E+ +T + D Sbjct: 721 SVGVRGINLANDDKVISMTILEHVEATSVERSAYIKRVINERRAAGSDAEDLVTLDEEDE 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +V+ ++E R EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK EIG Sbjct: 781 AVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVPV IRIA R+TKGV IF+TA+ E+VVSVERI E Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISE 900 Query: 900 SEIVDEAESTE 910 SE D E Sbjct: 901 SEDDDNQLDDE 911 >gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1] gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1] Length = 913 Score = 1008 bits (2606), Expect = 0.0, Method: Composition-based stats. Identities = 554/912 (60%), Positives = 688/912 (75%), Gaps = 8/912 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK+Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I D Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + L+IL SR+R+ I+K EL VK E TPRRT I E ++EDED I REDM Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVR Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+L+ GD VIS++I+ H +A ER Y+K A RR +G+ E Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780 Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + EG+ +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 781 EAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVSV Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898 Query: 895 ERIRESEIVDEA 906 ERI E++ + Sbjct: 899 ERIPETDDGENG 910 >gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 913 Score = 1008 bits (2605), Expect = 0.0, Method: Composition-based stats. Identities = 554/912 (60%), Positives = 688/912 (75%), Gaps = 8/912 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK+Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I D Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + L+IL SR+R+ I+K EL VK E TPRRT I E ++EDED I REDM Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVR Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+L+ GD VIS++I+ H +A ER Y+K A RR +G+ E Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780 Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + EG+ +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 781 EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVSV Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898 Query: 895 ERIRESEIVDEA 906 ERI E++ + Sbjct: 899 ERIPETDDGENG 910 >gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] Length = 935 Score = 1008 bits (2605), Expect = 0.0, Method: Composition-based stats. Identities = 597/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R L++ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVD 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K + +L D+ KDTVDF+ NYDG QEPVV+ AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LMEII GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR+GI +AY TGRGS+V+RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRSGINSAYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IEGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 L+ +L+AFV FREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 NLLDMLRAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A+D+ LI LIDD +TI D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA GD+VISMAI+ H DAD ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLADGDKVISMAILHHVDADAAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + + E ++EER QELK +EQ +LTVSE G+GKR+SSY+FR+S R GKGIRAT Sbjct: 781 DIVVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVESSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI E++ +E Sbjct: 901 VVSVERISETDSDEE 915 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLT 699 V+ +++G +R+ +F R G A DEI +++ + ILL Sbjct: 807 EQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQILLV 866 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR AGR++ GV + A G++V+S+ + D+D + Sbjct: 867 SDGGQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISETDSDEENGGEGDASPE 925 Query: 760 AQRRLISGDT 769 + + Sbjct: 926 GEAPAAGSEE 935 >gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 934 Score = 1007 bits (2604), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE W NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%) Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ED + + G V+R LS + R GK + ++ + + Sbjct: 642 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 700 Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611 VL + G + Sbjct: 701 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 760 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658 A K I + I+ ED + + Y V+ ++ G + Sbjct: 761 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 820 Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 R+ +F G A DEI +++ + ILL + GQ +R P+ I Sbjct: 821 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 880 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R AGR++ GV + A G++V+S+ + AD+D + + + Sbjct: 881 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 934 >gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1] Length = 934 Score = 1007 bits (2603), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEK+WRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19] gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10] gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94] gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1] gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1] gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether] gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1] gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19] gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28] Length = 934 Score = 1007 bits (2602), Expect = 0.0, Method: Composition-based stats. Identities = 596/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 934 Score = 1006 bits (2601), Expect = 0.0, Method: Composition-based stats. Identities = 596/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEDDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42] Length = 941 Score = 1006 bits (2600), Expect = 0.0, Method: Composition-based stats. Identities = 635/905 (70%), Positives = 754/905 (83%), Gaps = 1/905 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+I++P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI++ LDILSSR R+ I+K EL +V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L +GD++ISM IV H DA+ ER Y+K +A+RR I D E+I + + Sbjct: 721 NSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVD 904 E D Sbjct: 901 PEEDD 905 Score = 51.7 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 6/145 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ + I+L Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + D E + Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDDTEGAVDAAEAA 916 Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784 A E + + Sbjct: 917 AGADETPFADETPVADGDPGGAAEE 941 >gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840] gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840] Length = 934 Score = 1006 bits (2600), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TG GS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13] gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653] gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653] Length = 934 Score = 1005 bits (2599), Expect = 0.0, Method: Composition-based stats. Identities = 594/915 (64%), Positives = 729/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ ++HT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGIKLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+ A E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.8 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV ++A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNMADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1] gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1] Length = 934 Score = 1005 bits (2598), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEI YQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33] Length = 934 Score = 1005 bits (2598), Expect = 0.0, Method: Composition-based stats. Identities = 594/915 (64%), Positives = 730/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTLKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F +K D +++++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] Length = 934 Score = 1004 bits (2595), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVV+ AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94] Length = 934 Score = 1003 bits (2593), Expect = 0.0, Method: Composition-based stats. Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%) Query: 1 MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M++ ++ GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV Sbjct: 1 MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+ Sbjct: 61 HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NYDG QEPVVL AR+P Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GGIAVGMATNI HNLGEV+DGCVA+IDNP I+L LME+I GPDFPTG +IL Sbjct: 181 NLLVNGSGGIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KR Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAIL+LRL RLT LGRD+ Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRRT I G +M+DED Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFF Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+LLT GQC+RFP++ Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770 +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K A+RR D + Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+ Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900 Query: 891 VVSVERIRESEIVDE 905 VVSVERI +++ +E Sbjct: 901 VVSVERISDADSDEE 915 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928 Query: 763 RLISGD 768 + + Sbjct: 929 PAATQE 934 >gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] Length = 916 Score = 1003 bits (2592), Expect = 0.0, Method: Composition-based stats. Identities = 588/900 (65%), Positives = 714/900 (79%), Gaps = 3/900 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 3 SGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSVDGDPPAA RYTEC Sbjct: 63 SAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTEC 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP H Sbjct: 123 RLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILGR+G+++AY TGRGSI++R Sbjct: 183 NLSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAK 242 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLRDESDR GYRVVIE Sbjct: 243 VDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIE 302 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRT Sbjct: 303 LKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRT 362 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 KYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+ LI L Sbjct: 363 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 422 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 IDD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+S Sbjct: 423 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 482 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ I+K EL ++++E TPRRT G +ME ED I EDMVVTVSH GY+KRVPL Sbjct: 483 RVRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPL 542 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+ Sbjct: 543 NTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQS 602 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ALIN+L L QGERITTIMP PEDE+SW+ L ++FAT G VRRNKLSDF+Q+NR+GK Sbjct: 603 RGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGK 662 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRNSVGVRGI+LAKGD Sbjct: 663 IAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGD 722 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGD---TEEITSLKNDSSVEGNISEERC 790 +VISM I+ H +A ER Y+K + +RR D + I+ + D E ++++ER Sbjct: 723 KVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERY 782 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK EIG LVA FPV Sbjct: 783 AELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQ 842 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 DQI+LVSD G LIRVPV IR A R+TKGV IF+TA+ ERVVSVERI E E + E Sbjct: 843 DQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDE 902 Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 9/246 (3%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C +D+V+T + G R P+ R G+ GV + + ++ Sbjct: 675 SVETCTEHDDVVLT-TANGQCIRFPVLDVRV--FAGRNSVGVRGINLAKGDKVISMTILE 731 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 V S Y ++V + I L G T + E Sbjct: 732 HVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERYAELHAREQM 791 Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702 ++ ++ G +R+ +F I K ++++ ++ I+L + Sbjct: 792 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDG 851 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A+G++V+S+ + + D + S Sbjct: 852 GQLIRVPVEGIRT-AGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDEGEKHSDIV 910 Query: 763 RLISGD 768 + + Sbjct: 911 NMSEEE 916 >gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330] gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330] gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 922 Score = 1003 bits (2592), Expect = 0.0, Method: Composition-based stats. Identities = 593/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%) Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ED + + G V+R LS + R GK + ++ + + Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688 Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611 VL + G + Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 748 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658 A K I + I+ ED + + Y V+ ++ G + Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808 Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 R+ +F G A DEI +++ + ILL + GQ +R P+ I Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R AGR++ GV + A G++V+S+ + AD+D + + + Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922 >gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365] gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365] gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 922 Score = 1003 bits (2592), Expect = 0.0, Method: Composition-based stats. Identities = 594/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ STHT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%) Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ED + + G V+R LS + R GK + ++ + + Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688 Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611 VL + G + Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 748 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658 A K I + I+ ED + + Y V+ ++ G + Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808 Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 R+ +F G A DEI +++ + ILL + GQ +R P+ I Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R AGR++ GV + A G++V+S+ + AD+D + + + Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922 >gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M] gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 922 Score = 1002 bits (2591), Expect = 0.0, Method: Composition-based stats. Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941] gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308] gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457] gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1] gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941] gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA gyrase C-terminal repeat, beta-propeller [Brucella melitensis biovar Abortus 2308] gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457] gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90] Length = 922 Score = 1002 bits (2590), Expect = 0.0, Method: Composition-based stats. Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445] gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445] Length = 922 Score = 1002 bits (2590), Expect = 0.0, Method: Composition-based stats. Identities = 592/892 (66%), Positives = 723/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H D ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 91/295 (30%), Gaps = 58/295 (19%) Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ED + + G V+R LS + R GK + ++ + + Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688 Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611 VL + G + + Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDVTPAER 748 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658 A K I + I+ ED + + Y V+ ++ G + Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808 Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 R+ +F G A DEI +++ + ILL + GQ +R P+ I Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R AGR++ GV + A G++V+S+ + AD+D + + + Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922 >gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583] gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis] gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583] Length = 928 Score = 1002 bits (2590), Expect = 0.0, Method: Composition-based stats. Identities = 587/915 (64%), Positives = 721/915 (78%), Gaps = 5/915 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ KDTVDF+ NYDG EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGCVA+IDNP+I +D ++ II GPDFPTG +ILG +G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR + +P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W AS++ LI LIDD + I D T LSE Q RAILELRL RLT LGR++I +ELN++ Sbjct: 421 RWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G +I + L IL+SRSR++ I+K EL ++++ TPRRT G +M+ ED IV EDMVV Sbjct: 481 GEDIADYLGILASRSRIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +D+DFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW L ++FAT G VRRN Sbjct: 601 EKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++L T GQC+RFP++ IRVF+GR Sbjct: 661 KLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI++ +GD+VISM I+ H +A ER Y+K +RR+ D E+I ++ D Sbjct: 721 NSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDG 780 Query: 780 SV-EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +++ER EL EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD+SK EI Sbjct: 781 EETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV + DQI+LVSD G LIRVPVN IRIA R+TKGV +F+TAK E+VVSVERI Sbjct: 841 GKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERIS 900 Query: 899 ESEIVD---EAESTE 910 ESE + ES E Sbjct: 901 ESENDTNQLDIESEE 915 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 14/241 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 D VV ++ G R P++ R G+ GV + + ++ V S Sbjct: 693 EHDDVVLITANGQCIRFPVTDIRV--FSGRNSMGVRGINMVEGDKVISMTILEHVEATSV 750 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFAT 652 Y ++ + G +IL++++ T + E + + ++ + Sbjct: 751 ERSAYIKRAINE----RRVAGSDDEDILTVDEDGEETEVELTDERYAELSAHEQMLLTVS 806 Query: 653 KHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 + G +R+ DF G A L EI ++ + + I+L + GQ +R Sbjct: 807 EFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLVSDGGQLIR 866 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 P++ IR AGR++ GV + AKG++V+S+ + ++ D ++ + S + Sbjct: 867 VPVNCIR-IAGRSTKGVTVFNTAKGEKVVSVERISESENDTNQLDIESEEHSGTVSMSEE 925 Query: 768 D 768 Sbjct: 926 K 926 >gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] Length = 922 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 595/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP IDL LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 922 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEDDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68] gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] Length = 922 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D D+ILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] Length = 934 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 641/911 (70%), Positives = 759/911 (83%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQK AH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L +M+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSIV+RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSIVMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F N+VALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I DGT LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K+EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+++THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTIMP PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT+ +D+LLTT LGQC+RF +S +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISLA GD +ISM IV H DA+ ER Y+K +++RR +G+ EEI + + Sbjct: 721 NSIGVRGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D++QI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVEDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEAESTE 910 E D+A + Sbjct: 901 PEGDDDAVEAD 911 Score = 50.9 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ N I+L Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPVEDSNQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + D D + Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEGDDDAVEADAEDGV 916 Query: 760 AQRRLISGDTEEITSLKN 777 E + + Sbjct: 917 PNGEAEVPAGEAEGTSEE 934 >gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915] gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915] Length = 922 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAGTQE 922 >gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] Length = 930 Score = 1001 bits (2588), Expect = 0.0, Method: Composition-based stats. Identities = 626/909 (68%), Positives = 756/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTDQSPPGGGKLPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGNAAIYDALARMAQDWSLRL LI+GQGNFGS+ Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+I+GR+GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIMGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG + IE GDREQI++TE+PYQVNKA M+EK+AELV+EKRI I+DLR Sbjct: 241 YETGRGSVIMRGRATIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQ+YRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQIYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KARDRAHVLVGLAI+VAN+DEV+R+IR +P+P +AR ELM R Sbjct: 361 FVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I DGT LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAQDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI E L+ILSSR R++ I+K EL++++DE TPRR+ IVEG DM+DED I REDMVV Sbjct: 481 GAEISEYLEILSSRLRIMQIVKDELIAIRDEFGTPRRSEIVEGGPDMDDEDLISREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ++GKALIN+L L GERITTIMP PEDE++W L V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KL DF+Q+NR+GKIAMKL + DEILSVETCT ++D+LLTT LGQC+RFP+ +RVFAGR Sbjct: 661 KLGDFVQVNRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NSVGVRGI++A GD++ISM IV H +A+ ER Y+K + +RR D E+I + + Sbjct: 721 NSVGVRGINMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +SEER QELK +E+F+LTVSEKG+GKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 AEEGELSEERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV++ DQI+LVSD G LIRVPVN IRIASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVDEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINE 900 Query: 900 SEIVDEAES 908 E +EAE+ Sbjct: 901 PEGDEEAEN 909 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF R K E+++ + + I+L Sbjct: 798 EEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P++ IR A R + GV S AK ++V+S+ + + D + + ++ Sbjct: 858 SDGGQLIRVPVNGIR-IASRATKGVTIFSTAKDEKVVSVERINEPEGDEEAENGNGEDVA 916 Query: 760 AQRRLISGDTEEIT 773 E Sbjct: 917 DTLPDTPEAPESEA 930 >gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] Length = 922 Score = 1001 bits (2587), Expect = 0.0, Method: Composition-based stats. Identities = 592/892 (66%), Positives = 723/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+ A E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDADSDEE 903 Score = 54.4 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV ++A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNMADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 922 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 592/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD K +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.8 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F +K D +++++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99] Length = 922 Score = 1000 bits (2584), Expect = 0.0, Method: Composition-based stats. Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4] gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4] Length = 930 Score = 998 bits (2581), Expect = 0.0, Method: Composition-based stats. Identities = 627/908 (69%), Positives = 751/908 (82%), Gaps = 2/908 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + I +SI EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILFGM Sbjct: 1 MTEQSTPGGKMPSD-IEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+ Sbjct: 60 SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSI 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 120 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A+I+NP IDL LM+II GPDFPTGA+ILGR+GI++A Sbjct: 180 GIAVGMATNIPPHNLVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALILGRSGIRSA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI I+DLR Sbjct: 240 YETGRGSVIMRGVARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQS F NMVALNG KPE+ TL+ +L+A Sbjct: 300 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLDMLRA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEV+ RRTKYLL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P+TAR +LM+R Sbjct: 360 FVSFREEVISRRTKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMER 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I ELN + Sbjct: 420 RWPAADVESLIRLIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKI 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI + LDILSSR+R+ I+ EL++V+DE TPRR++I+EG DM+DED I REDMVV Sbjct: 480 GAEISDYLDILSSRTRIQTIVVDELVAVRDEFGTPRRSQIMEGGPDMDDEDLIAREDMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 540 TVSHLGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE+SW+NL V+F+T G VRRN Sbjct: 600 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRN 659 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT ++D+LLTT LGQ +RFP+ +RVFAGR Sbjct: 660 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL D++ISM I+ H DA+ +R Y+K + +RR D ++I + + Sbjct: 720 NSIGVRGISLQPNDRIISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEV 779 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 G++SEER QELK +EQF+LT+SE+G GKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 780 GEIGDLSEERYQELKAREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIG 839 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D DQI+LVSD G LIRVPV+ IRIASRATKGV IF+TAKDE+VVSVERI E Sbjct: 840 QLVAAFPVEDKDQIMLVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINE 899 Query: 900 SEIVDEAE 907 E ++ E Sbjct: 900 PEGEEDGE 907 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI------LSVETCTQENDILL 698 +V+ ++ G +R+ DF G ++ + ++ ++ I+L Sbjct: 797 EQFVLTISERGIGKRSSSYDFRTS-GRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIML 855 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + GQ +R P+ IR A R + GV + AK ++V+S+ + + + D I Sbjct: 856 VSDGGQLIRVPVDGIR-IASRATKGVTIFNTAKDEKVVSVERINEPEGEEDGEIGAETSA 914 Query: 759 SAQRRLISGDTEEITS 774 + +E + Sbjct: 915 EEGVATDTATPDESAT 930 >gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94] Length = 922 Score = 998 bits (2581), Expect = 0.0, Method: Composition-based stats. Identities = 593/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNI HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916 Query: 763 RLISGD 768 + + Sbjct: 917 PAATQE 922 >gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse] gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse] Length = 925 Score = 998 bits (2579), Expect = 0.0, Method: Composition-based stats. Identities = 580/911 (63%), Positives = 714/911 (78%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVD C+A+ID+P+I LD ++EII GPDFPTG +ILG +GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIILGHSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELK+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR + +P+ AR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L IL+SRSR++ I+K EL +++ TPRRT G +M+ ED I EDMVV Sbjct: 481 GVDIADYLHILASRSRIMSIVKDELNVLREAFATPRRTIFGFGSAEMDCEDLIAPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVLFFSTRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+Q+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +R+FAGRN Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDS 779 SVGVRGI+L GD+VISM ++ H +A ER Y+K + +RR D E+I +ND Sbjct: 721 SVGVRGINLTNGDKVISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +++ER EL +EQ +LT+SE G+GKR+SSY+FRIS R GKGIRATD SK EIG Sbjct: 781 GTETELTDERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVPV+ IRI R+TKGV IF+TA+ ++VVSVERI E Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISE 900 Query: 900 SEIVDEAESTE 910 SE E Sbjct: 901 SEDDVSQLDDE 911 >gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188] gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188] Length = 923 Score = 996 bits (2576), Expect = 0.0, Method: Composition-based stats. Identities = 590/896 (65%), Positives = 722/896 (80%), Gaps = 2/896 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R L++GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K +L D+ KDTVDF+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+I+NP I L+ ++EII GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIILGRAGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ L+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDILSSR Sbjct: 432 DPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMTIVKDEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DAD R Y+K A+RR D ++I + D + ++EE QEL Sbjct: 732 VISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI E++ +E S Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISEADSDEENGSE 907 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ +++G +R+ +F R G A DEI +++ + ILL + Sbjct: 798 VLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQILLVSDG 857 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + + Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISEADSDEENGSEGEAASEGEA 916 Query: 763 RLISGDT 769 + + Sbjct: 917 PIADTEE 923 >gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278] gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp. ORS278] Length = 916 Score = 996 bits (2575), Expect = 0.0, Method: Composition-based stats. Identities = 559/913 (61%), Positives = 692/913 (75%), Gaps = 5/913 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK Y K AR G+V+GKYHPHG+ ++Y AL RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDDL KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A+ DNP + +D L +II GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY TGRGSIV+RG I+ DRE I++TEIPYQVNKA+M+E+IAELVREK+I I+D Sbjct: 241 SAYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVV+ELKR A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L Sbjct: 301 LRDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 QVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D+ +I LIDD + I DGT LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 421 SRDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + LDIL SR+R+ I+K EL ++K E TPRRT I E +MEDED I REDM Sbjct: 481 KLAVEIADYLDILRSRARVQDIVKTELSAIKAEFATPRRTVIAEQEGEMEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY KRVPLS YRAQRRGGKGR+G+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLPI +P RGKALINIL L QGERITTIMP PEDESSW NL V+FAT GNVR Sbjct: 601 YKEKVWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD +EI++V+ CT+ +D+LLT GQC+RFP++ +RVF G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+LA+GD++IS+ I+ H + DER Y+K A + + T + Sbjct: 721 RTSMGVRGIALAEGDKLISLTILRHVETTSDERTAYLKMRRAMSGETAAEEPVETEGEEA 780 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ +S+ER E+ +EQ +LTVS G+GKRTSSY++R + R GKGI A V+ N Sbjct: 781 AAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN-- 838 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI- 897 G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I Sbjct: 839 GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIG 898 Query: 898 RESEIVDEAESTE 910 E+E + A TE Sbjct: 899 EEAENGNGANGTE 911 >gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 941 Score = 996 bits (2575), Expect = 0.0, Method: Composition-based stats. Identities = 632/899 (70%), Positives = 751/899 (83%), Gaps = 1/899 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+I++P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISLA GD++ISM IV H +A+ ER Y+K + RRL +G+ EEI + + Sbjct: 721 NSIGVRGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 6/145 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ + I+L Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + D E + Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVEVAEGG 916 Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784 A E + + + Sbjct: 917 APATDEGAAGEAPIADGDPAGPAEE 941 >gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1] gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1] Length = 929 Score = 996 bits (2574), Expect = 0.0, Method: Composition-based stats. Identities = 596/908 (65%), Positives = 724/908 (79%), Gaps = 3/908 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +E + I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MTDQTTRGPDEPDD-IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAS 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G WN+KYVK AR +VMGKYHPHG+A+IYDAL RMAQDWS+R+ LI+GQGNFGS+ Sbjct: 60 YESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSI 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K AH LL+D+ KDTVDF+ YDG+ EP +L AR+PN+LVNG G Sbjct: 120 DGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV+GCVA+IDNP + L L+EII GPDFPTG +ILGR+GI +A Sbjct: 180 GIAVGMATNIPPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIILGRSGIHSA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGS+V+RG + IE+ +RE I++TE+PYQVNKA M+EK+AELVREKRI I+D+R Sbjct: 240 YATGRGSVVMRGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYR+T LQ+ F NMVALNG KPE L+ +L+A Sbjct: 300 DESDRQGYRVVIELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLLDMLRA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVV RRTKYLL K R+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 360 FVAFREEVVTRRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMER 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LI D + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 420 RWPAQDVESLILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKI 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI++ LDILSSR+R+ GI+K EL++V+DE TPRRT I EG DMEDED I REDMVV Sbjct: 480 GAEIQDYLDILSSRARVQGIVKDELIAVRDEFGTPRRTEITEGGADMEDEDLIPREDMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KRVPLS+YRAQ RGGKGRSG+ +DEDFVT LF+ +THT +LFFSS G VYK Sbjct: 540 TVTHKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYK 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+G+PQ+ GK L N+L L +GERIT+IMP PEDE SW L V+FAT G VRRN Sbjct: 600 EKVWRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF Q+NR+GKIAMKLD DEIL+V TCT+++D+LLT GQC+RFP++ +RVFAGR Sbjct: 660 KLSDFTQVNRNGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKND 778 NS+GVRGI+L GD+VISMAIV H DA ER Y+K +A+RRL +G D EEI + Sbjct: 720 NSIGVRGINLPDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEE 779 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +S ER +ELK +EQF+LTVSE G+GKR+SSYDFR+ R GKGIRATDVSK EI Sbjct: 780 VGEETVLSPERYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEI 839 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G+L+A FPV DQI+LVS+ G +IRVPV IRIASRATKGV IF+TA ERVVSV+RI Sbjct: 840 GSLIAAFPVAPEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSVDRIS 899 Query: 899 ESEIVDEA 906 E + +E Sbjct: 900 EPQNGEED 907 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 97/301 (32%), Gaps = 58/301 (19%) Query: 528 EDEDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582 E+ + + G V+R LS + R GK + ++ +F Sbjct: 631 SIMPLPEDEESWAALDVMFATTRGTVRRNKLSDFTQVNRNGKIAMKLDEEGDEI-LAVFT 689 Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALIN--------------------- 620 + VL ++ G + V + + G IN Sbjct: 690 CTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSIGVRGINLPDGDKVISMAIVGHVDATPA 749 Query: 621 ------------------------ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 L+ + T + P +E +V+ +++G Sbjct: 750 ERAAYLKQAAAERRLSNGSDEEEIALTNEEVGEETVLSPERYEELKAREQFVLTVSEYGY 809 Query: 657 VRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 +R+ DF I R G A + R+EI ++ E+ I+L + GQ +R P++ Sbjct: 810 GKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVAPEDQIMLVSNAGQIIRVPVT 869 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 IR A R + GV + A G++V+S+ + ++ G+ Sbjct: 870 GIR-IASRATKGVTIFNTADGERVVSVDRISEPQNGEEDAAVPEGAGEIPPADSEGEGGA 928 Query: 772 I 772 Sbjct: 929 E 929 >gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] Length = 904 Score = 994 bits (2570), Expect = 0.0, Method: Composition-based stats. Identities = 555/903 (61%), Positives = 695/903 (76%), Gaps = 5/903 (0%) Query: 1 MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ +D+ I VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 1 MTDPKDPADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 61 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILG+ GI++ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIILGKQGIRS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVR+K+I I+DL Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDL 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR GYRVV+ELKR A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L Sbjct: 301 RDESDRDGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMS 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++ ++ LIDD + I +DGT LS Q +AIL+LRL RLT LGRD+I +EL+ Sbjct: 421 RDWPAKDVETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL SR+R+ GI++ EL +VK+E TPRRT IV+ ++EDED I REDMV Sbjct: 481 LAVEIADYLDILRSRARVQGIVRDELTAVKNEFATPRRTVIVDQEGEVEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G VY Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW+ L V+FAT GNVRR Sbjct: 601 KEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ + +D+LLT GQC+RFP++ +RVF GR Sbjct: 661 NKLSDFVDVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L GD++IS+ I+ H D + DER Y++ +A RR G +E + ++ Sbjct: 721 TSMGVRGINLGDGDKLISLTILRHMDVNADERAAYLRRANAVRR--GGVEDEAGTDSEEA 778 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + E+R E+ EQF+LT+SE G+GKRTSSY++R + R GKGI A V+ N G Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRN--G 836 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D+DQI+LV+DKG LIR PV +IRIA R+T+GV +F+T+ DERVVSVE + + Sbjct: 837 KLVASFPVEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVEHLTD 896 Query: 900 SEI 902 Sbjct: 897 EGE 899 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 13/221 (5%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746 E+ ++ + G R P+S R R G G+ D V + + VL + Sbjct: 537 EDMVVTVSHAGYVKRVPLSTYRAQK-RGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSS 595 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + + G I E E ++ + Sbjct: 596 RGQVYKEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTG 655 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G +R DF R GI A + + ++V V +ND ++L + G IR P Sbjct: 656 GNVRRNKLSDFVDVRR--SGIIAMKLDEGE---SIVDVQIAKENDDVLLTAAGGQCIRFP 710 Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V ++R+ R + GV + ++++S+ +R ++ + Sbjct: 711 VTDVRVFQGRTSMGVRGINLGDGDKLISLTILRHMDVNADE 751 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%) Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDIL 697 S N +V+ +++G +R ++ R G +AM ++ ++++ + I+ Sbjct: 792 MSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIM 851 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 L T GQ +R P+ IR AGR++ GV + + ++V+S+ + E Sbjct: 852 LVTDKGQLIRCPVEDIR-IAGRSTQGVTVFNTSDDERVVSVEHLTDEGEQSGE 903 >gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] Length = 930 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 551/910 (60%), Positives = 687/910 (75%), Gaps = 11/910 (1%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M + + + I VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQD+S+RL LI GQGNFGS Sbjct: 61 MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTECRL+K AH L D+ KDTV+F NYDGS QEP VL ARYPN+LVNG Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HN+GEV+DG +A+I+ P+I L LMEII GPDFPTG +ILGR GIK Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKA 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGS+++R E+ R I+V+EIPYQVNK+AM+EKIAELVREKRI I+D+ Sbjct: 241 AYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDRQG RVVIELK+ A DVI+NQLYRY+ LQ F NMVALNG +PE+ L +LK Sbjct: 301 RDESDRQGMRVVIELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+AFREEVV RRT++LL KARDRAHVLVGLA+A AN+D+V+ +IR +P+P TARR+LM+ Sbjct: 361 AFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R+W A DI+ LI LIDD Y I DGT LSE Q RAIL+LRL RLT LGRD+I +EL+ Sbjct: 421 RNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L EIK+ LDIL SR R+L I++ EL V+DE TPRRT I +G D++DED I REDMV Sbjct: 481 LAAEIKDYLDILKSRERILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPL YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G Y Sbjct: 541 VTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+ PQARG AL+N+L L QGERIT+I+P PE+E +W L V+FATK G +RR Sbjct: 601 KMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF QIN++GKIAMKL+ D I++V T T+++D+LLTT G C+RFP + +RVF+GR Sbjct: 661 NKLSDFAQINKNGKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NSVGVRGI+LA+GD VISM I+ H D D DER Y+K A ++ Sbjct: 721 NSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFE------ 774 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +++ER + + + ILTVSE G+GKRTSSY++R + R GKGI A V+ N G Sbjct: 775 --DAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRN--G 830 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA F ++D+I+LV++ G LIR PV+ IR+A R+T+GV++F+T+ DE+VV+VERI E Sbjct: 831 RLVASFRSEESDEIMLVTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERISE 890 Query: 900 SEIVDEAEST 909 ++ + E+ Sbjct: 891 ADDDENVEAE 900 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 47/290 (16%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E V+ + G ++R LS + + GK + + + D + ++ + VL +S Sbjct: 646 ELDVLFATKRGTIRRNKLSDFAQINKNGKI--AMKLEEGDGIVNVMTSTEDDDVLLTTSA 703 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-------- 647 G + + R + ++L +G+ + ++ + + Sbjct: 704 GMCIRFPTTDVR--VFSGRNSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRA 761 Query: 648 -------------------------------VVFATKHGNVRRNKLSDFIQINR--SGKI 674 ++ +++G +R ++ R G Sbjct: 762 MSGEEGAESVSFEDAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIA 821 Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AM ++ R+ L ++E ++I+L T GQ +R P+ IRV AGR++ GV + + + Sbjct: 822 AMTVNDRNGRLVASFRSEESDEIMLVTNGGQLIRCPVHGIRV-AGRSTQGVIVFNTSADE 880 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 +V+++ + AD D + + A ++ Sbjct: 881 KVVAVERISEADDDENVEAEGVSEGGADNGEAGAVPPAPEGDGGETPSAE 930 >gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] Length = 905 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 552/909 (60%), Positives = 691/909 (76%), Gaps = 5/909 (0%) Query: 1 MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ ++ I VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 1 MTDPKDPTESGSGPVDIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 61 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILGR GI++ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGSIV+RG IE DRE IVV+EIPYQVNKA M+E+IAELVR+K+I ++DL Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDL 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+GYRVV+ELKR A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L Sbjct: 301 RDESDREGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+P TAR LM Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMS 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++ ++ LIDD + I DGT LS Q +AIL+LRL RLT LGRD+I EL+ Sbjct: 421 RDWPARDVETMMMLIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL SR+R+ I++ EL ++K+E TPRRT I++ ++EDED I REDMV Sbjct: 481 LAVEIADYLDILRSRARVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQ+RGGKGRSG+ R+EDFV LF+ STHT VLFFSS G VY Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW L V+FAT GNVRR Sbjct: 601 KEKVWRLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKL + I+ V+ C + +D+LLT GQC+RFPI+ +RVF GR Sbjct: 661 NKLSDFVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L +GD++IS+ I+ H D DER Y++ +A RR G +E + ++ Sbjct: 721 TSMGVRGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRR--GGADDEAGTDHEEA 778 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + E+R E+ EQF+LT+SE G+GKR+SSY++R + R GKGI A V+ N G Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRN--G 836 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L+ FPV+D+DQI+LV+DKG LIR PV +IRI R+T+GV +F+TA DERVVSVER+ + Sbjct: 837 KLIGSFPVDDSDQIMLVTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTD 896 Query: 900 SEIVDEAES 908 E Sbjct: 897 EGEHPSDEE 905 >gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 887 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 547/886 (61%), Positives = 678/886 (76%), Gaps = 6/886 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK+Y K AR G+V+GK Sbjct: 1 MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL K A LLD Sbjct: 61 YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D C+A Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG IE DRE Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I+V+EIPYQVNKA M+E+IAELVREK+I I DLRDESDR G+RVVIEL+R A +V+L Sbjct: 241 AIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLY++T LQ+ F NMVAL G +P+ L +L FVAFRE+VV RRTK+LLNKARDRA Sbjct: 301 NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A+D+ +I LIDD + + D Sbjct: 361 HILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNPD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LS Q +AIL+LRL RLT LGR++I EL+ L +EI + L+IL SR+R+ I+K E Sbjct: 421 GTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVKTE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L VK E TPRRT I E ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK Sbjct: 481 LGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ P RGKALINIL L Sbjct: 541 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QGERITTIMP PEDE+SW+ L V+FAT GNVRRNKLSDF+ + RSG IAMKLD + I Sbjct: 601 EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAI 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + V+ CT+ +D+LLT GQC+RFP+ +RVF+GR S+GVRGI+L+ GD VIS++I+ H Sbjct: 661 VDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHF 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQELKLKEQFI 800 +A ER Y+K A RR +G+ E + EG+ +S+ER E+ EQF+ Sbjct: 721 EATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFV 780 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT+SE G+GKRTSS+++R + R GKGI A V+ N G LVA FPV D+DQI+LV+D G Sbjct: 781 LTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRN--GKLVASFPVEDSDQIMLVTDNG 838 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 LIR PV IR+A R+T+GV++F+TA DE+VVSVERI E++ + Sbjct: 839 QLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDDGENG 884 >gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M] Length = 902 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 589/883 (66%), Positives = 719/883 (81%), Gaps = 2/883 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A + GEVMGK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL+K LL Sbjct: 61 YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE GDRE Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELKR A ADV+L Sbjct: 241 AIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRA Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD +T+ D Sbjct: 361 HVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNED 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E Sbjct: 421 NTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 +++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGK Sbjct: 481 MIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RGKALIN+L L Sbjct: 541 GRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683 QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL D DE Sbjct: 601 QQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H Sbjct: 661 ILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHH 720 Query: 744 ADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 DA ER Y+K A+RR D ++I + D E +SE+R QELK +E+ +LT Sbjct: 721 VDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLT 780 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 VSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI+LVSD G L Sbjct: 781 VSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQL 840 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 IRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 841 IRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 883 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 778 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 837 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 838 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 896 Query: 763 RLISGD 768 + + Sbjct: 897 PAATQE 902 >gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] Length = 945 Score = 991 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 627/899 (69%), Positives = 749/899 (83%), Gaps = 1/899 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGCVA+ID+P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT+++D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L D++ISM IV H DA+ ER Y+K + +RR D E+I + + Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER EL+ +EQF+LTVS+KGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQE 693 DE +V+ ++ G +R+ DF K E+++ Sbjct: 792 DELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDG 851 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + I+L + GQ +R P+ IR A R + GV S AK ++V+S+ + + D E Sbjct: 852 DQIMLVSDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAV 910 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + + + +EE Sbjct: 911 EVAEGAPATDEGAAGEGGGDEAPIADGDPAGPAEE 945 >gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1] Length = 927 Score = 990 bits (2560), Expect = 0.0, Method: Composition-based stats. Identities = 585/916 (63%), Positives = 717/916 (78%), Gaps = 6/916 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTPLTERDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGS+ Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K + LL D+ KDTVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVDGC+A+ID+P I LD +++II GPDFPTG +ILG +GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI ++DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ IL+A Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL +AR+RAHVLVGLAIAVAN+DE++ +IR + +P+ AR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI LI LIDD + I D T +LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAVDIAPLIKLIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + LDIL+SRSR++GI+K EL ++++ TPRRT G DM+ ED I E+MVV Sbjct: 481 GVDITDYLDILASRSRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP P+DE W L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMK + DEILSVETCT+ +D++LTT GQC+RFP+S +RVF GR Sbjct: 661 KLSDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +S+GVRGI++ D+VISM I+ H +A ER Y+K + ++RR D E+I +S Sbjct: 721 HSMGVRGINMGDSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDEES 780 Query: 780 SV-EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +++ER EL EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD SK EI Sbjct: 781 EATVTELTDERYMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV DQI+LVSDKG LIRVPVN IRIA R+TKGV IF+TAK E+VVSVERI Sbjct: 841 GKLVAAFPVEAQDQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900 Query: 899 ESE----IVDEAESTE 910 E E DE ES + Sbjct: 901 EPEVNASEPDEEESEQ 916 >gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 933 Score = 990 bits (2560), Expect = 0.0, Method: Composition-based stats. Identities = 601/914 (65%), Positives = 730/914 (79%), Gaps = 5/914 (0%) Query: 1 MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDQKTPRGADGGPTGIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 + G WN+KYVK AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS Sbjct: 61 AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+ YD S EP VL AR+PN+LVNG Sbjct: 121 IDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI + Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY+TGRGSIV+RG +IE+ DRE I++TE+PYQVNK++M+EK+AELVR+KRI I+D+ Sbjct: 241 AYSTGRGSIVMRGRVNIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F NMVALNG KPE L +LK Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFVAFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+ Sbjct: 361 AFVAFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W + D++ LI LIDD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN+ Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 +G EI + LDILSSR+R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMV Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGSDMEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS+YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VY Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW LYV+FAT G VRR Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 N LSDF+Q+NR+GKIAMKL + DEIL VETCT ++D+LLT GQC+RF + +RVF Sbjct: 661 NDLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQS 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSL 775 RNSVGVRGI++A+ D++ISM+++ H DA ER Y+K +A+RRL +G+ EEI Sbjct: 721 RNSVGVRGITMAETDRIISMSVIEHVDASPAERAAYLKRAAAERRLATETAGEEEEIALT 780 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + E +S+ R +ELK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKA 840 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900 Query: 896 RIRESEIVDEAEST 909 RI E + +E+E T Sbjct: 901 RISEPQADEESEET 914 Score = 54.4 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 YV+ T+ G +R+ DF K +++ ++ I+L Sbjct: 802 EQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGNDDQIMLV 861 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G +R P++ IR FA R + GV + A+G++V+S+ + AD + Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQADEESEETVEGGAD 920 Query: 760 AQRRLISGDTEEI 772 A +G Sbjct: 921 AAAASDAGPEGAD 933 >gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C] Length = 922 Score = 990 bits (2559), Expect = 0.0, Method: Composition-based stats. Identities = 584/911 (64%), Positives = 720/911 (79%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+ID+P+I LD ++EII GPDFPTG +ILGR+G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I E L ILSSR R++GI+K EL ++++E TPRRT G +M +ED IV EDMVV Sbjct: 481 GVDITEYLHILSSRLRIMGIVKDELSTLREEFVTPRRTVFGFGNAEMNNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+ W+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +R+F GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR DTE+ + +N+ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENED 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SEIVDEAESTE 910 E + Sbjct: 901 PEDDANQLDDD 911 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 91/240 (37%), Gaps = 13/240 (5%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C R+D+V+T + G R P+ R + + + H Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMTILEHV 744 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++ + R G+ + I+ N+ T + E + Sbjct: 745 EATSVERSAYIKRAINERRSAGADTED----VVIVDENEDGDETELTDERYAELAAREQM 800 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS------VETCTQENDILLTTK 701 ++ ++ G +R+ +F +I+ G ++ ++ + ++ I+L + Sbjct: 801 LLTVSEFGYGKRSSSYEF-RISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSD 859 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GQ +R PI IR AGR++ GV + AKG++V+S+ + + D ++ + S Sbjct: 860 GGQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSGM 918 >gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] Length = 947 Score = 990 bits (2559), Expect = 0.0, Method: Composition-based stats. Identities = 573/911 (62%), Positives = 709/911 (77%), Gaps = 2/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E I++ E GI S+SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MAEDDITTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MG+ +N+ Y K A + GEVMGKYHPHG+++IYDAL RMAQDWSLR LIEGQGNFGS+ Sbjct: 61 HGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K + LL D+ K+TV+F+ NYDG QEPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE+VDGCVA+IDNP I L+ LM I GPDFPTGA++LGR GI +A Sbjct: 181 GIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y+TGRGSI++RG +H+E DRE IV+TE+P+QVNK+ M+EK+A+LVR+KRI I+D+R Sbjct: 241 YSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVV+ELKR AS+DVILNQLYR+T LQ+ F NMVALNG +PE+ TL +L A Sbjct: 301 DESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F++FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R Sbjct: 361 FISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W A D+ LI LIDD + I +GT LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 AWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI+E L+ILSSR R+ IIK+EL++V+DE TPRRT + EG DM+DED I REDMVV Sbjct: 481 GEEIREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEGAADMDDEDLIPREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVY 599 TVSH GY+KRVPL+ YR+QRRGGKGR+G+ ++++ D VT LF+ +THT VLFFSS G VY Sbjct: 541 TVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ SPQ+RGKALIN+L L +GERIT+I+P P D + L V+FAT G VRR Sbjct: 601 KEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 NKLSDF Q+NR+GKIAMKLD DEIL+V TC++++D+LLT GQC+RF + +RVFAG Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RNSVGVRGISL +GD+VISMAI+ H DA ER Y+K A GD +++ + Sbjct: 721 RNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEE 780 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + I +ER L E+ ILTVSE G+GKR+SSY+FR+ R GKGIRATD S+ +EI Sbjct: 781 GAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L+A FPV DQI+LV+D+G LIRVPV IR A RAT+GV IF TA ERVVSVERI Sbjct: 841 GQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIP 900 Query: 899 ESEIVDEAEST 909 + + E+ Sbjct: 901 DQGADEAGEAE 911 Score = 52.1 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 6/147 (4%) Query: 648 VVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKL 702 ++ ++ G +R+ +F I R + ++++ + ILL T Sbjct: 802 ILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQLMAGFPVESGDQILLVTDR 861 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR + GV A G++V+S+ + AD Sbjct: 862 GQLIRVPVEGIRT-AGRATRGVTIFKTADGERVVSVERIPDQGADEAGEAEADTIDGDLE 920 Query: 763 RLISGDTEEITSLKNDSSVEGNISEER 789 + + + ++ +G++ + Sbjct: 921 DGGVDGSTPDETGPDAAAPDGDVPPQE 947 >gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 922 Score = 990 bits (2558), Expect = 0.0, Method: Composition-based stats. Identities = 584/911 (64%), Positives = 722/911 (79%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP+I LD ++EII GPDFPTG +ILGR+G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L ILSSR R++GI+K EL ++++E TPRRT G +M++ED IV EDMVV Sbjct: 481 GVDITDYLHILSSRLRIMGIVKNELSTLREEFVTPRRTVFGFGNAEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVF GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR DTE+ + +++ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDED 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVS+ G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SEIVDEAESTE 910 E + Sbjct: 901 PEDDANQLDDD 911 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 91/240 (37%), Gaps = 13/240 (5%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C R+D+V+T + G R P+ R + + + H Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRVFVGRNSVGVRGINMVDGDKVISMTILEHV 744 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++ + R G+ + I+ ++ T + E + Sbjct: 745 EATSVERSAYIKRAINERRSAGADTED----VVIVDEDEDGDETELTDERYAELAAREQM 800 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS------VETCTQENDILLTTK 701 ++ ++ G +R+ +F +I+ G ++ ++ + ++ I+L + Sbjct: 801 LLTVSEFGYGKRSSSYEF-RISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSN 859 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GQ +R PI IR AGR++ GV + AKG++V+S+ + + D ++ + S Sbjct: 860 GGQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSGM 918 >gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060] gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060] Length = 911 Score = 990 bits (2558), Expect = 0.0, Method: Composition-based stats. Identities = 558/899 (62%), Positives = 696/899 (77%), Gaps = 6/899 (0%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 ++ + I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + Sbjct: 6 KNDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYE 65 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++R++L++GQGNFGS+DG Sbjct: 66 NGYLPDRKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDG 125 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE RL K A LL+D+ K+TVDF PNYD S EP VL AR+PN+LVNG GGI Sbjct: 126 DPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGI 185 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGEV+DGCVA+ID+P + ++AL EII GPDFPTG +ILGR G + AY Sbjct: 186 AVGMATNIPPHNLGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLILGRAGTRAAYM 245 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGS+V+R SH+E+ +RE +V TEIPYQVNKA+++EKIA+LVREKRI +ADLRDE Sbjct: 246 TGRGSVVMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDE 305 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +++AF+ Sbjct: 306 SDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFI 365 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR LM R W Sbjct: 366 DFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDW 425 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 A+DI LI L+DD + + DGT LSE Q RAIL+LRL RLT LGRD++ +EL L Sbjct: 426 PAADIAPLIALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLAD 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI + LDIL SR+R+LGI+K EL V+ E TPR+T I + ++EDED I REDMVVTV Sbjct: 486 EIADYLDILRSRARILGIVKAELAEVRAEYATPRKTEIQDWDSNVEDEDLIQREDMVVTV 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+KRVPLS YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YKEK Sbjct: 546 SHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 VWRLP+ +P ARGKAL+NIL L+Q GERITTIMP PEDE+SW L V+FAT GNVRRNK Sbjct: 606 VWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRRNK 665 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+Q+NR+GKIAMKLD D I+ VE CT+ +D+LLTT GQC+RFP++ +RVF GR+S Sbjct: 666 LSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDS 725 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI+L K D+VISM I+ H +A +ER Y++ +A RR + T+ + D Sbjct: 726 TGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPEADGEE 785 Query: 782 ---EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ +ER ++ EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+ N Sbjct: 786 TTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARN-- 843 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA FPV +DQI+LV++ G LIRVPV++IRI RA++GV +F+TAKDERVVSVE I Sbjct: 844 GHLVASFPVEPSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 902 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 14/222 (6%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH-------AD 745 E+ ++ + G R P+S R R G G++ D V + + + Sbjct: 539 EDMVVTVSHAGYIKRVPLSTYRA-QRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSS 597 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + A I L I E + ++ + Sbjct: 598 QGQAYKEKVWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATA 657 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G +R DF NR+GK A + + +V V + D ++L + G IR Sbjct: 658 SGNVRRNKLSDFVQVNRNGK--IAMKLDEG---DHIVHVEICTEADDVLLTTAAGQCIRF 712 Query: 866 PVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 PV ++R+ R + GV + KD+RV+S+ +R E E Sbjct: 713 PVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPEE 754 >gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] Length = 923 Score = 988 bits (2555), Expect = 0.0, Method: Composition-based stats. Identities = 576/912 (63%), Positives = 718/912 (78%), Gaps = 2/912 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+T+DF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLY YT LQ+ F N+VALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAH+LVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ L+ LIDD + I + T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L IL+SR R++GI+K EL ++++E PRRT G ++M++ED IV EDMVV Sbjct: 481 GVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKLD D ILSVETCT+ +D++LTT GQC+RFP+ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NSVGVRGI++ GD+VISM I+ H +A ER Y+K +RR D E++ + + Sbjct: 721 NSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDENG 780 Query: 780 S-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EI Sbjct: 781 EGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV DQI+LVSD G LIR+P+ IRIA R+TKGV IF+TAK E+VVSVERI Sbjct: 841 GKLVAAFPVKAQDQIMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900 Query: 899 ESEIVDEAESTE 910 + E + Sbjct: 901 DPEDDANQLDDD 912 Score = 54.4 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 11/238 (4%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C R+D+V+T + G R P+ R G+ GV + + ++ Sbjct: 687 SVETCTERDDVVLT-TANGQCIRFPVIDVRV--FAGRNSVGVRGINMVDGDKVISMTILE 743 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 V S Y ++ + +I + N T + E + Sbjct: 744 HVEATSVERSAYIKRAINERRAAGADAEDVVI--VDENGEGTETELTDERYAELAAREQM 801 Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702 ++ ++ G +R+ +F I K ++++ ++ I+L + Sbjct: 802 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQIMLVSDG 861 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 GQ +R PI IR AGR++ GV + AKG++V+S+ + + D ++ + S Sbjct: 862 GQLIRIPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSG 918 >gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] Length = 914 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 543/911 (59%), Positives = 679/911 (74%), Gaps = 5/911 (0%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M + E I VSIT+E+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MADSETPKPGGEPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR+ G+V+GKYHPHG+ ++YDAL RMAQ +++RL L++GQGNFGS Sbjct: 61 MHENGYEWNKSYRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL+K + LLDDL KDTVDF+ NYD S EP VL A++PN+LVNG Sbjct: 121 VDGDAPAAMRYTEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGE+VD VA++D+P ++ +AL++++ GPDFPTGA+ILGRTGI+ Sbjct: 181 GGIAVGMATNIPPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALILGRTGIRQ 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSI++R IE +RE ++VTEIPYQVNKA M+EK+AELVR+KRI IA++ Sbjct: 241 AYLTGRGSILMRAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G KP TL +L Sbjct: 301 RDESDRDGMRVVIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPGVLTLHDVLT 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+AFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P +AR LM Sbjct: 361 AFIAFREEVISRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMA 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D+ LI LI D + +G D T LS Q RAIL+LRL RLT LGRD+I EL+ Sbjct: 421 RDWPAKDMAPLIALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL+SR R+ I++ EL+++K+E TPRRT IVEG D+EDED I RE+MV Sbjct: 481 LAVEIADYLDILASRPRMRAIVRAELIAIKEEFGTPRRTEIVEGFGDLEDEDLIQREEMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS YRAQRRGGKGRS + RDEDFVT LF+ STH VLFFSS G VY Sbjct: 541 VTVSHAGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+ +PQARGKALINIL L Q ERIT+++ PED L ++FAT G VRR Sbjct: 601 KLKVWRLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 N L+DF Q+NR+GKIAMKL+ + I V CT+++D+LLTT G C+RFP++ +RVF GR Sbjct: 661 NALTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFPVTDVRVFKGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +SVGVRGI L GD +ISMAI+ H DA +ER+ Y+K A + + Sbjct: 721 DSVGVRGIRLEDGDTIISMAIIGHVDASAEERLAYIKRRRAL--AGEATEAGDVEAEEGA 778 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 S G++ ++R E+ KEQFILTVSE G+GKRTSSY++R++ R GKGI A V++ N G Sbjct: 779 SGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--G 836 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D DQI+LV+D G LIR PV+ IRI RA++GV++F TA+ ERVVSVE I + Sbjct: 837 RLVASFPVEDQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISD 896 Query: 900 SEIVDEAESTE 910 + ++ E Sbjct: 897 DAGAENSDGEE 907 >gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] Length = 914 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 552/901 (61%), Positives = 687/901 (76%), Gaps = 6/901 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 + E + I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 3 LAEKDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSM 62 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++RL+L++GQGNFGS+ Sbjct: 63 YENGYLPERKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSI 122 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K A LL+D+ K+TVDF PNYD S EP VL AR+PN+LVNG G Sbjct: 123 DGDPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAG 182 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV++GC+A+ID+P + ++ L EII GPDFPTG ILGR G + A Sbjct: 183 GIAVGMATNIPPHNLGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQILGRAGTRAA 242 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++R SH+E+ +RE +V TEIPYQVNKA+++EKIAELVR+KRI ++DLR Sbjct: 243 YMTGRGSVIMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLR 302 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +++A Sbjct: 303 DESDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQA 362 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR LM R Sbjct: 363 FIDFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMAR 422 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI LI L+DD + + DGT LS+ Q RAIL+LRL RLT LGRD++ +EL L Sbjct: 423 DWPAVDIAPLIALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQL 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI + LDIL SR+R+LGI+K EL V+ E TPRRT I + +EDED I REDMVV Sbjct: 483 ADEIADYLDILRSRARILGIVKAELAEVRAEFATPRRTEIQDWDSTVEDEDLIQREDMVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPLS YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YK Sbjct: 543 TVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYK 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 EKVWRLP+ +P ARGKAL+NIL L+ ERITTIMP PEDE+SW L V+FAT G+VRR Sbjct: 603 EKVWRLPLAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRR 662 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+Q+NR+GKIAMKLD D I+ VE CT+ +D+LLTT GQC+RFP++ +RVF GR Sbjct: 663 NKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGR 722 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +S GVRGI+L GD+VISM I+ H +A +ER Y++ +A RR E + + D Sbjct: 723 DSTGVRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGEAIELPATPEADG 782 Query: 780 SVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++ +ER + EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+ N Sbjct: 783 EETAASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRN 842 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV +DQI+LV++ G LIRVPV++IRI RA++GV +F+TAKDERVVSVE Sbjct: 843 --GHLVASFPVETSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEH 900 Query: 897 I 897 I Sbjct: 901 I 901 >gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] Length = 912 Score = 988 bits (2553), Expect = 0.0, Method: Composition-based stats. Identities = 550/901 (61%), Positives = 683/901 (75%), Gaps = 6/901 (0%) Query: 1 MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M E D+ E+ I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL+L++GQGNFG Sbjct: 61 SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVD DPPAA RYTE RL K A LL+D+ + TVDF+PNYDG EP VL AR+PN+LVNG Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D +A+ID PD+ + LMEI+ GPDFPT A ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATILGRGGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 NAYATGRGSI++R + IE +RE I+ TEIPYQVNKAA++E+IAELV+EKR+ IAD Sbjct: 241 NAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F+VNM+ALNG +PE TL +L Sbjct: 301 LRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALNGGRPELMTLHDVL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 +AFV FRE VV RRTK+ L KARD AH+ VGLAIAVAN+DEV+R+IR SP+ AR LM Sbjct: 361 RAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D+ L++LI D + + DGT+ LSE Q RAIL+LRL RLT LGR++I LN Sbjct: 421 ARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L EI E L+IL SR +L GIIK E+L+VK+ TPRRT+I + D+EDED I REDM Sbjct: 481 KLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATPRRTQITDAEGDVEDEDLIAREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ M++EDFV LF+ +THT VLFFSS G Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKA 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ +PQARGKAL+N+L L GERITTIMP PEDESSW L V+FAT G VR Sbjct: 601 YKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + R+G IAMKLD + I+ V T T+ +DILLTT GQC+RF + +RVF G Sbjct: 661 RNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD--TEEITSLK 776 R S+GVRG+SL +GD+VIS++I+ H +A +ER Y+K +A RR + D + + Sbjct: 721 RTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAE 780 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++ +++ER +++ EQ ILTVSE G+GKRTSSY++R + R GKGI A V+ N Sbjct: 781 EAATGAVELTDERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARN 840 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV D+I+LV++ G LIR PV+ IRIA R+T+GV++F+TA+DERVVSVE Sbjct: 841 --GKLVASFPVGQGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSVEH 898 Query: 897 I 897 I Sbjct: 899 I 899 >gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 915 Score = 988 bits (2553), Expect = 0.0, Method: Composition-based stats. Identities = 546/914 (59%), Positives = 686/914 (75%), Gaps = 8/914 (0%) Query: 1 MTEHIIS--SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 MT++ E I VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDNSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M ++G++WNKKYVK ARI GEVMGKYHPHGN AIYDAL R+AQD+S+R+ L++GQGNFG Sbjct: 61 AMNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGDPPAAERYTE RL K A FLLDDL DTVD+R NYDG+ QEP VL A++PN+LVNG Sbjct: 121 SIDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A +DNP+I +D L +II+GPDFPT +ILGR GI Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGGIL 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY GRGSI++R +E DRE +VV+EIPYQVNK ++EKIA+LVR+K+I I+D Sbjct: 241 SAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 L DES+R+G R+VIELKR A ADV+LN LY+Y+ LQ+ F NM+A+NG +PE TL + Sbjct: 301 LWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKDFI 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 AF +FR++VV RR K+LLNKARDRAHVLVGLAIAVAN+DEV+++IRFS +P A+ +LM Sbjct: 361 SAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D+ LI+LI D + + + GT LSE Q +AILELRLARLT LGRD+I +ELN Sbjct: 421 ARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELN 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + EI+E L IL+SR+R++ I+K EL ++KDE TPR+T IV+ ++EDED I RED Sbjct: 481 KIANEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQREDC 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ STHT VLFFSS G Sbjct: 541 VVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMC 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ KVWRLP SPQ+ GKAL+N+L L Q E IT+I+P PED S+W+ L ++FAT+ GNVR Sbjct: 601 YRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-IRVFA 717 RN L+DF INR+GKIAMKLD D I+ V + D+LLT+ GQCVRF IS IR+F Sbjct: 661 RNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFK 720 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR+S GVRGI L GD+VISMAI+ H +A +ER Y+K SA RR + E + + Sbjct: 721 GRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEETEDAEPVAEAD 780 Query: 778 DSSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V +S ER ++ EQF+LTVS KGFGKR+SS++FR S R GKGI A V+ Sbjct: 781 AEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVND 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G L+A FP+++ DQI+LV+D G LIR PV+ +RIA R T+GV IF T +E+VVSV Sbjct: 841 RN--GRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSV 898 Query: 895 ERIRESEIVDEAES 908 ERI E E + +E Sbjct: 899 ERITEDETDEGSEG 912 >gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 945 Score = 987 bits (2551), Expect = 0.0, Method: Composition-based stats. Identities = 625/899 (69%), Positives = 746/899 (82%), Gaps = 1/899 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+ID+P I+L L++II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K ELL+V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RD DFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL + DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L D++ISM IV H DA+ ER Y+K + +RR D E+I + + Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 EG +S++R EL+ +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 IEEGQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LVA FP++D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPIDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 6/155 (3%) Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQE 693 DE +V+ ++ G +R+ DF K E+++ Sbjct: 792 DELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPIDDG 851 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + I+L + GQ +R P+ IR A R + GV S AK ++V+S+ + + D E Sbjct: 852 DQIMLVSDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAV 910 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + S + D +EE Sbjct: 911 EIAEGSPATEEGAADEGGGDEAPIADGDPAGPAEE 945 >gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] Length = 913 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 562/905 (62%), Positives = 689/905 (76%), Gaps = 4/905 (0%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 +E + GI VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 4 SEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMH 63 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVD Sbjct: 64 ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD AA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ II GPDFPTG +ILGR GI++AY Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIRSAY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRGSIV+RG I+ DRE IV++EIPYQVNKA+M+E+IAELVREK+I I+DLRD Sbjct: 244 HLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLRD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR+G+RVV+ELKR A +V+LNQLYR+T LQ+ F NMVAL+ +P+ L +L F Sbjct: 304 ESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P AR LM R Sbjct: 364 IAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRD 423 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ L Sbjct: 424 WPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IEI + LDIL SR+R+ IIK EL +VK E TPRRT IVE ++EDED I REDMVVT Sbjct: 484 IEIADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GYVKRVPLS YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G VYKE Sbjct: 544 VSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKE 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW L V+FAT G VRRNK Sbjct: 604 KVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNK 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+ + RSG IAMKL + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF+GR S Sbjct: 664 LSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTS 723 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITSLKN 777 +GVRGI+LAKGD+VIS++I+ H DA ER Y+K A RR +G+ E Sbjct: 724 MGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + + ++ E R E+ EQF+LTV+ +G+GKR+SS++FR+S R GKGIRATD +K+ E Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGE 843 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IG LVA FPV +DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA DE VVSVE I Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVEHI 903 Query: 898 RESEI 902 RE Sbjct: 904 REDGE 908 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 58/214 (27%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 ADY + + + A + + + + + E ++L +E ++TVS Sbjct: 487 ADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSH 546 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835 G+ KR +R R GKG Sbjct: 547 AGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869 N G L+ + P++ + ++ + GT+ R +++ Sbjct: 607 RLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNKLSD 666 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R+ G++ + E +V V+ E + V Sbjct: 667 FVDVRRS--GIIAMKLGEGESIVDVQICTERDDV 698 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 28/282 (9%) Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGL----LDMEDEDCIVREDMVV 540 E ++ + + K + RR+ I+ + D D V+ Sbjct: 640 EDESSWAALDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVL 699 Query: 541 TVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED----FVTDLFIVSTHTSVLFFSS 594 + G R P++ R + R R + + + + F + + Sbjct: 700 LTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQ 759 Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G + + P + +A LSL +G + +V+ T Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810 Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707 G +R+ +F + I KL +++ + I+L + GQ +R Sbjct: 811 AQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 P+ IR R S GVR + A + V+S+ + + + Sbjct: 871 VPVEGIR-ITSRASKGVRVFNTADDEHVVSVEHIREDGENGN 911 >gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 931 Score = 986 bits (2549), Expect = 0.0, Method: Composition-based stats. Identities = 598/914 (65%), Positives = 727/914 (79%), Gaps = 5/914 (0%) Query: 1 MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ + GI +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 + G WN+KYVK AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS Sbjct: 61 AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+ YD S EP VL AR+PN+LVNG Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI + Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY+TGRGSIV+RG +IE+ DRE I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+ Sbjct: 241 AYSTGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F NMVALNG KPE TL +LK Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+ Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++ LI LIDD + I +DGT LSE Q RAILELRL RLT LGRD+I +ELNS Sbjct: 421 RRWPAGDVESLILLIDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNS 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 +G EI + LDILSSR+R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMV Sbjct: 481 IGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS+YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VY Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW L V+FAT G VRR Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 NKLSDF+Q+NR+GKIAMKL + DEIL VETCT +D+LLT GQC+RF + +RVF Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQS 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK---HMSAQRRLISGDTEEITSL 775 RNSVGVRGI++A+ D++ISM+++ + DA ER Y+K +G+ EEI Sbjct: 721 RNSVGVRGITMAETDRIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALT 780 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + E +S+ER + LK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK Sbjct: 781 NEEIGEEAELSDERYEFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900 Query: 896 RIRESEIVDEAEST 909 RI E + +E+E T Sbjct: 901 RISEPQSDEESEET 914 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 YV+ T++G +R+ DF K +++ ++ I+L Sbjct: 802 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLV 861 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G +R P++ IR FA R + GV + A+G++V+S+ + +D + Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEETVEGGTE 920 Query: 760 AQRRLISGDTE 770 + + E Sbjct: 921 SAPDAGPENAE 931 >gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] Length = 906 Score = 986 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 624/885 (70%), Positives = 747/885 (84%), Gaps = 1/885 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL+KAAH LLD Sbjct: 61 FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGCVA Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NP I+L +M+II GPDFPTGA+I+GR+GI++AY TGRGS+++RGV+ IE GDRE Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QI++TE+PYQVNKA+M+EK+AELV+EKRI I+DLRDESDRQGYRVVIELKR A+A+VIL Sbjct: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKYLL KARDRA Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAI+VAN+DEV+R+IR +P+P +AR +LM R W A D++ LI LIDD + I D Sbjct: 361 HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRLARLT LGRD+I +ELN +G EI E LDILSSR R+ I+K E Sbjct: 421 GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L+S++DE TPRR++IVEG DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGK Sbjct: 481 LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ RDEDFV LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++GKALIN+L L Sbjct: 541 GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDE 683 GERITTIMP PEDE++W L V+F+T G VRRNKL DF+Q+NR+GKIAMKLD DE Sbjct: 601 EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ILSVETCT +D+LLTT LGQC+RFP+ +RVFAGRNSVGVRGI++A+GD++ISM IV H Sbjct: 661 ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH 720 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +A+ ER Y+K + +RR D E+I + + + EG +SEER QELK +E+F+LTV Sbjct: 721 VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV 780 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 S KGFGKR+SSYDFR S R GKGIRATD +K NEIG LVA FPV + DQI+LVSD G LI Sbjct: 781 SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI 840 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 RVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E DEAE+ Sbjct: 841 RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAEN 885 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 89/299 (29%), Gaps = 57/299 (19%) Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 E T+ + G V+R L + R GK + ++ + + Sbjct: 610 MPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDEI-LSVETCT 668 Query: 585 THTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643 VL ++LG + V + + G IN+ ++ +T + + Sbjct: 669 DRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGHVEAEPWER 728 Query: 644 --------------------------------------------NNLYVVFATKHGNVRR 659 +V+ + G +R Sbjct: 729 AAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTVSVKGFGKR 788 Query: 660 NKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 + DF R K + E+++ + + I+L + GQ +R P++ IR Sbjct: 789 SSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLIRVPVNGIR 848 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 A R + GV S AK ++V+S+ + + D + E Sbjct: 849 -IASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAENGNDDEADDNLPDAPEAPESEA 906 >gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3] Length = 922 Score = 986 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 583/911 (63%), Positives = 722/911 (79%), Gaps = 1/911 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + LD+L+SR R++GI+K EL +++ E TPRRT G +M++ED IV EDMVV Sbjct: 481 GVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTPRRTIFGFGNAEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPLS YRAQRRGGKGRSG+ +DEDFVT LF+ +THTSVLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L + ER+TTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVF GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR+ D + + +++ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEE 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 EIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SEIVDEAESTE 910 E + Sbjct: 901 PEDDANKLDDD 911 Score = 52.1 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 84/239 (35%), Gaps = 11/239 (4%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E C R+D+V+T + G R P+ R + + + H Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRVFMGRNSVGVRGINMVDGDKVISMTILEHV 744 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++ + R G+ + + E E + Sbjct: 745 EATSVERSAYIKRAINERRVAGADAEDVVIVDEDEEEIETELTDERYA----ELASREQM 800 Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702 ++ ++ G +R+ +F I K ++++ ++ I+L + Sbjct: 801 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIGKLVAAFPVKAQDQIMLVSDG 860 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GQ +R PI IR AGR++ GV + AKG++V+S+ + + D ++ + S Sbjct: 861 GQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANKLDDDSEKHSGM 918 >gi|190891755|ref|YP_001978297.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652] gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652] Length = 919 Score = 985 bits (2546), Expect = 0.0, Method: Composition-based stats. Identities = 624/877 (71%), Positives = 741/877 (84%), Gaps = 1/877 (0%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM Sbjct: 2 EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L Sbjct: 62 GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 LDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +A+I++P I+L LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GD Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 REQI++TEIPYQVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+V Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 ILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+ Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 D T LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 EL +V+DE TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681 L GERITTI+P PEDE SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL + Sbjct: 602 PLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 H DA+ ER Y+K +A+RR D E+I + + + EG +S+ER +ELK +EQF+L Sbjct: 722 GHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 TVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878 Score = 50.2 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ + I+L Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + + E + Sbjct: 837 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGA 895 Query: 760 AQRRLISGDTEEITSLKNDSSVEG 783 S + + Sbjct: 896 PAAEEGSAGETPVVDGDPAGPAKE 919 >gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512] Length = 919 Score = 985 bits (2546), Expect = 0.0, Method: Composition-based stats. Identities = 623/877 (71%), Positives = 742/877 (84%), Gaps = 1/877 (0%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM Sbjct: 2 EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L Sbjct: 62 GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 LDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +A+I++P I+L LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GD Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 REQI++TEIPYQVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+V Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 ILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+ Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 D T LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 EL +V+DE TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681 L GERITTI+P PEDE+SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL + Sbjct: 602 PLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 H DA+ +R Y+K +A+RR D E+I + + + EG +S+ER +ELK +EQF+L Sbjct: 722 GHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 TVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878 Score = 50.9 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ + I+L Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + + E + Sbjct: 837 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGA 895 Query: 760 AQRRLISGDTEEITSLKNDSSVEG 783 S + E Sbjct: 896 PAADESSAGETPVADGDPAGPAEE 919 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 910/910 (100%), Positives = 910/910 (100%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM Sbjct: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 Query: 901 EIVDEAESTE 910 EIVDEAESTE Sbjct: 901 EIVDEAESTE 910 >gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] Length = 922 Score = 984 bits (2543), Expect = 0.0, Method: Composition-based stats. Identities = 500/909 (55%), Positives = 663/909 (72%), Gaps = 12/909 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT I + I+ ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTSTIPTP-----SDISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + K Y K ARI G+VMGKYHPHG+ AIYDA+ RMAQD+S+RL LI+GQGN+GS+ Sbjct: 56 KDGGYDSTKPYKKSARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSM 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL KAA FLLDD+ K+TVDF+PNYD S EP VL A++PN+LVNG G Sbjct: 116 DGDPPAAMRYTEARLAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAG 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV+D C A IDNP+I +D L++I+ GPDFPTGA+ILGR+GI++A Sbjct: 176 GIAVGMATNIPTHNLGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALILGRSGIRSA 235 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSIV+R + IE+ DR IVVTEIPYQVNKA + E+IAE+V EK + I+D+R Sbjct: 236 YHTGRGSIVMRAKTDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIELKR A ADV+LNQL+R+T LQ+ F VNM+ALNG +PE L I+ A Sbjct: 296 DESDRDGVRVVIELKRDAVADVVLNQLFRFTPLQTSFGVNMLALNGGRPELLDLKSIIAA 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FRE+V+ RRT++ L KAR+RAH LVGLA+AVAN+DE++ +IR +P+P TAR ++M R Sbjct: 356 FVRFREQVITRRTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAR 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LID+ + GT LSE Q +AIL+LRL RLTGL RD I ELN + Sbjct: 416 EWPALDVAPLIQLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQV 475 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I+ L IL+ R LL I++ EL+ +K PRRT I E + + ED I REDMVV Sbjct: 476 VDQIRHLLAILADRGLLLDILRGELVDMKARFGNPRRTTIEELEFEADVEDLIQREDMVV 535 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 V+ GY+KRVP+S YRAQ RGGKGRSG+ ++ ED V+DLF+ +THT +LFF++ G VY Sbjct: 536 IVTQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYT 595 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G+PQ RGKAL+N+L L +G+ ITT+MP PED++SW +L+V+FAT G VRRN Sbjct: 596 LKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGVRRN 655 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +LSDF I +G IAMKL + + +++ C++ +D+LL+T+LG+C+RFP+ IRVF+GR Sbjct: 656 RLSDFANIRSNGLIAMKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGR 715 Query: 720 NSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-- 776 S GVRGI L GD+VI M+I+ H D ++R Y+K R+ + T+ + Sbjct: 716 TSTGVRGIKLVEDGDEVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVE 775 Query: 777 -NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + +E E++ E+ ILTVSE+GFGKRTS+Y++R++ R G+GI D+ + Sbjct: 776 AEPVETSLVLPQELFIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGER 835 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N+ A+ AVFP+++ DQ++++SD G +IR+PV++IR+ R +KGV +F DERVVSV Sbjct: 836 NK--AIAAVFPISETDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVA 893 Query: 896 RIRESEIVD 904 R+ E D Sbjct: 894 RLAEEAAGD 902 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 13/221 (5%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 E+ +++ T+ G R P+S R R G G+SL D V + + Sbjct: 531 EDMVVIVTQGGYIKRVPVSTYRA-QARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTN 589 Query: 753 CYMKHMSAQRRLISGDTEEITS------LKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 M + RL G + + + + + +L + + Sbjct: 590 RGMVYTLKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSR 649 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G +R DF +N G+ A + + E L+A P ++ D ++L + G IR P Sbjct: 650 GGVRRNRLSDF--ANIRSNGLIAMKLEEEGE--RLIAARPCSEADDVLLSTRLGRCIRFP 705 Query: 867 VNEIRI-ASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905 V EIR+ + R + GV + V+ + +R ++ E Sbjct: 706 VGEIRVFSGRTSTGVRGIKLVEDGDEVIGMSILRHTDYSAE 746 Score = 61.0 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 5/237 (2%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 D V+ + LG R P+ R G ++ + ++ +S + + Sbjct: 687 SEADDVLLSTRLGRCIRFPVGEIR-VFSGRTSTGVRGIKLVEDGDEVIGMSILRHTDYSA 745 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 Y ++ +L + + E + E ++ ++ Sbjct: 746 EQRAAYLKQARQLRQAMGEPTDADEAPDVEAEPVETSLVLPQELFIEMQAAEEIILTVSE 805 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710 G +R ++ R G+ +D + I +V ++ + +++ + GQ +R P+ Sbjct: 806 QGFGKRTSAYEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMISDNGQVIRMPV 865 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 IR GR S GV L ++V+S+A + A + I + +A G Sbjct: 866 HDIR-LTGRKSKGVTLFRLGPDERVVSVARLAEEAAGDGQGIEGNGNGAADAPGPDG 921 >gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] Length = 933 Score = 983 bits (2541), Expect = 0.0, Method: Composition-based stats. Identities = 593/914 (64%), Positives = 723/914 (79%), Gaps = 5/914 (0%) Query: 1 MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ + GI +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 + G WN+KYVK AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS Sbjct: 61 AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAA RYTE RL K AH LL+D+ K+TVDF+ YD S EP VL AR+PN+LVNG Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI + Sbjct: 181 GGIAVGMATNIPPHNLSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AYATGRGSIV+RG +IE+ DRE I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+ Sbjct: 241 AYATGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F NMVALNG KPE L +L+ Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLR 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+ Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W + D++ LI LIDD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN+ Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 +G EI + LDILSSR+R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMV Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS+YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VY Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW L V+FAT G VRR Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 NKLSDF+Q+NR+GKIAMKL + DEIL VETCT +D+LLT GQC+RF + +RVF Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQS 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS---L 775 RNSVGVRGI++A D++ISM+++ H DA ER Y+K +++RRL + E Sbjct: 721 RNSVGVRGITMAATDRIISMSVIEHVDASPAERAAYLKRAASERRLAAETAGEEEEIALT 780 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + E +S+ R +ELK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE Sbjct: 841 AEIGQLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900 Query: 896 RIRESEIVDEAEST 909 RI E + +E E Sbjct: 901 RISEPQSDEEIEEA 914 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 YV+ T++G +R+ DF K ++++ ++ I+L Sbjct: 802 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGNDDQIMLV 861 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G +R P++ IR FA R + GV + A+G++V+S+ + +D + Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEEIEEAVQGGSE 920 Query: 760 AQRRLISG 767 A +G Sbjct: 921 ANPTPDAG 928 >gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 909 Score = 983 bits (2540), Expect = 0.0, Method: Composition-based stats. Identities = 561/911 (61%), Positives = 684/911 (75%), Gaps = 3/911 (0%) Query: 1 MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M + D+ + I VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGS Sbjct: 61 MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGDPPAA RYTE RL KAA LL D+ KDTVDF+PNYD + EP VL A++PN+LVNG Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D CVA+IDNP + +D L+ I+ GPDFPTG VILGR GI+ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRA 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGSIV+RG IE +RE +++TEIPYQVNKA M+E+IAELV+EK+I I DL Sbjct: 241 AYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDL 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR GYRVVIELKR A ADV+LNQLYR+T LQ+ F VNMVAL+ +P L +L Sbjct: 301 RDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLA 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV FRE VV RRTK+LL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 IFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMS 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++D++ LIDD + I DGT+ LS Q RAIL+LRL RLT LGRD+IR+EL+ Sbjct: 421 RDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L EI + LDIL SR R+LGIIK EL VK E TPRRT I+E ++EDED I REDMV Sbjct: 481 LAGEIADYLDILRSRERVLGIIKTELAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGR+G+ RDEDFV+ LF+ STHT VLFFSS G VY Sbjct: 541 VTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ +P ARGKALINIL L QGERITTIMP PEDES+W NL V+FAT GNVRR Sbjct: 601 KEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF GR Sbjct: 661 NKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L +GD+VIS+AI+ H + DER Y+K A + + + ++ Sbjct: 721 TSMGVRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEET 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 S +++ER E+ EQ +LTVS G+GKRTSSY++R + R GKGI A V+ N G Sbjct: 781 SGSFQLAQERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--G 838 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D DQI+LV+DKG LIR PV IRIA R+T+GV++F TA+DE VVSVE I E Sbjct: 839 NLVASFPVEDADQIMLVTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE 898 Query: 900 SEIVDEAESTE 910 + E Sbjct: 899 EAESGNGANGE 909 >gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] Length = 913 Score = 983 bits (2540), Expect = 0.0, Method: Composition-based stats. Identities = 560/908 (61%), Positives = 690/908 (75%), Gaps = 6/908 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + GI VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDIEDTKPEEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG Sbjct: 61 AMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD AA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L++II GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIILGRQGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY GRGSIV+RG I+ DRE IVV+EIPYQVNKA+M+E+IAELVREK+I I+D Sbjct: 241 SAYHLGRGSIVMRGKVSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR+G+RVV+ELKR A +++LNQLY+YT LQ+ F NMVAL+ +P+ L +L Sbjct: 301 LRDESDREGFRVVVELKRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGRPQVMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P AR LM Sbjct: 361 TLFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 421 SRDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L IEI + LDIL SR+R+ IIK EL +VK E TPRRT IVE ++EDED I REDM Sbjct: 481 KLAIEIADYLDILRSRARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW +L V+FAT G VR Sbjct: 601 YKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKL + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF+G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITS 774 R S+GVRGI+LAKGD+VIS++I+ H DA ER Y+K A RR +G+ E Sbjct: 721 RTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPE 780 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + ++ E R E+ EQF+LTV+ G+GKR+SS++FR+S R GKGIRATD +K Sbjct: 781 ADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTK 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + EIG LVA FPV +DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA E VVSV Sbjct: 841 LGEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSV 900 Query: 895 ERIRESEI 902 E IRE Sbjct: 901 EHIREDGE 908 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 58/214 (27%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 ADY + + + A + G + + + + E ++L +E ++TVS Sbjct: 487 ADYLDILRSRARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSH 546 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835 G+ KR +R R GKG Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869 N G L+ + P++ + ++ + GT+ R +++ Sbjct: 607 RLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKLSD 666 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R+ G++ + E +V V+ E + V Sbjct: 667 FVDVRRS--GIIAMKLGEGESIVDVQICTERDDV 698 Score = 57.5 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 28/282 (9%) Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGL----LDMEDEDCIVREDMVV 540 E + + + K + RR+ I+ + D D V+ Sbjct: 640 EDESSWADLDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVL 699 Query: 541 TVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED----FVTDLFIVSTHTSVLFFSS 594 + G R P++ R + R R + + + + F + + Sbjct: 700 LTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQ 759 Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G + + P + +A LSL +G + +V+ T Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810 Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707 +G +R+ +F + I KL +++ + I+L + GQ +R Sbjct: 811 TYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 P+ IR R S GVR + A G+ V+S+ + + + Sbjct: 871 VPVEGIR-ITSRASKGVRVFNTADGEHVVSVEHIREDGENGN 911 >gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510] gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510] Length = 927 Score = 981 bits (2537), Expect = 0.0, Method: Composition-based stats. Identities = 500/909 (55%), Positives = 665/909 (73%), Gaps = 9/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + I ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSNTPLPP----ASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + K Y K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S+RL LI+GQGNFGS+ Sbjct: 57 KEGGYDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSM 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL KAA LLDD+ KDT+DF+ +YD S +EP V+ AR+PN+LVNG G Sbjct: 117 DGDPPAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV+D C A IDNPD+ LD LME + GPDFPTG +ILGR+G + A Sbjct: 177 GIAVGMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLILGRSGSRAA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRGSI++R +H E+ DR I+ TEIPYQVNKA ++E+I E+V +K I IADLR Sbjct: 237 LQTGRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIELKR A DV+L QL+R+T LQ+ F VNM+ALNG +PE L+ ++ A Sbjct: 297 DESDRDGVRVVIELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLLDVITA 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FRE+V+ RRT++LL KAR+RAH LVGLA+AVANLD ++ +IR +P+P AR E+M R Sbjct: 357 FVRFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNR 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W D+ LI+LID+ + GT LSEVQ RAIL+LRL RLTGL RD I EL + Sbjct: 417 EWPVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDV 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + L L++R +L+GI++ EL+ +K+ TPRRT I + + + ED I REDMVV Sbjct: 477 TDQIADFLATLANRPKLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVS GYVKRVPLS YRAQ+RGGKGR+G+ M+ ED V+DLF+ +THT +L FS+ G VYK Sbjct: 537 TVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYK 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+RLP+G+PQARGKA +N+L L GE ITT++P PEDE++W +L+VVFAT GNVRRN Sbjct: 597 LKVYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRN 656 Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++SDF I +G IAMKL + + ++ V TC++ +DILL T+ G+C+RFP+ +RVFAGR Sbjct: 657 RMSDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGR 716 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S GVRGI LA GD+V+S++I+ H DA +ER + K + + G E Sbjct: 717 TSTGVRGIKLADGDEVVSLSILAHVDATPEERAAFFKMKRDEGLEMEG--EAAPEADEVP 774 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +++ER +ELK KEQ+ILTVS++G+GKR+SSY++R + R G+GI ++ + N G Sbjct: 775 TDSVTLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERN--G 832 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++VA FPV N Q+++V++ G +IR+P++++R+A R T GV +F DERVVSV I E Sbjct: 833 SIVAAFPVESNHQVMMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAE 892 Query: 900 SEIVDEAES 908 + A++ Sbjct: 893 EDGETGADA 901 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 4/139 (2%) Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLT 699 Y++ + G +R+ ++ R G+ ++ + I++ + +++ Sbjct: 790 QKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMV 849 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 T GQ +R P+ +RV AGR ++GV + ++V+S+A + D + Sbjct: 850 TNGGQVIRMPLHDVRV-AGRKTLGVTLFRVGADERVVSVATIAEEDGETGADAGAESGGD 908 Query: 760 AQRRLISGDTEEITSLKND 778 A S T+ ND Sbjct: 909 ANGSDGSIGDAGGTAAPND 927 >gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1] gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1] Length = 965 Score = 981 bits (2536), Expect = 0.0, Method: Composition-based stats. Identities = 548/903 (60%), Positives = 688/903 (76%), Gaps = 12/903 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ + ++I DEM++SYL YA++VI+ RA+PD RDGLKPVHRRILF M + G +WNK Y Sbjct: 65 ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ +IYDAL RMAQD+S+RL L++GQGNFGSVDGDPPAA RYTE Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH LL+D+ K+T+DF+ NYDG+ +EPVVL A PN+LVNG GIAVGMATNIP Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D C+A+IDNPDI +D L+E + PDFPTG ++LGR G + AY TG+GS+V+RG Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIMLGRQGARLAYHTGKGSVVVRG 304 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 E+ DR+ I+++EIPYQVNKA+M+EKIA+LVREKRI IADLRDESDR G RVV+ Sbjct: 305 RVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVVV 364 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R A DV+LNQLYR++ LQ F NM+AL+ +PE L L+ FVAFREEV+ RR Sbjct: 365 ELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGRPELMNLKQFLEIFVAFREEVISRR 424 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ LNKARDRAHVLVGLAIAVAN+DEV+++IR +P+P +AR LM R W A DI LI Sbjct: 425 TKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPLIA 484 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LIDD + + DGT+ +SE Q RAILELRL RLT LGRD+I +EL LG I++ L IL Sbjct: 485 LIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSILR 544 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+R+L I++ EL ++K E TPRRT I E D EDED I REDMVVTVSH GY+KRVP Sbjct: 545 SRARVLDIMRTELTAIKAEFATPRRTEIAESESDFEDEDLIQREDMVVTVSHQGYIKRVP 604 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQRRGGKGRSG+ +DEDFVT LF+ +THT +LFFSS G VYK KVWRLP +PQ Sbjct: 605 LSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLKVWRLPQSTPQ 664 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGKA+INIL L+ GE ITT+MP PEDE+SW++L+V+FAT+ G+VRRNKLSDF+QINR+G Sbjct: 665 ARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKLSDFVQINRNG 724 Query: 673 KIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 KIAMK D+ D I+ V+ CT+E+D+LLT G+CVRFP++ +RVF+ R S GVRGI L Sbjct: 725 KIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSRKSTGVRGIRL 784 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG------ 783 D++I+M+I+ H D E Y+K +A RR +SG+ EE + ++ Sbjct: 785 GDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEAEEGEEEAAEE 844 Query: 784 -NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +S ER EL +EQF+LTVSEKGFGKR+SSYD+R S R GKGI A V+ N G LV Sbjct: 845 MTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRN--GNLV 902 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A FPV+ DQI+LV+D G LIR PV+++R A RAT+GV IF TA DERVVSVER+ E+ Sbjct: 903 ASFPVDVQDQIMLVTDAGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSVERVEETGS 962 Query: 903 VDE 905 +E Sbjct: 963 DEE 965 >gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] Length = 927 Score = 981 bits (2536), Expect = 0.0, Method: Composition-based stats. Identities = 479/905 (52%), Positives = 660/905 (72%), Gaps = 3/905 (0%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M G Sbjct: 1 MSDISSTHHDIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGY 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +W + Y K ARI G+VMG+YHPHG++AIYDA+ RMAQD+S+RL L++GQGNFGS+DGDPP Sbjct: 61 DWTRPYRKSARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL KAA LL D+ K+TVD+ PNYD + +EP VL A YPN+LVNG GGIAVG Sbjct: 121 AAMRYTEARLAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNLGEVVD C+A++DNP I +D L+ ++ GPDFPTG +ILGR+GI+ AY TGR Sbjct: 181 MATNIPPHNLGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLILGRSGIREAYHTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+V+RG + IE+ DR IVVTEIPYQVNK+ ++E+I E+VR+K + I+DLRDESDR Sbjct: 241 GSVVMRGRAEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVV+ELKR A +V+LNQLYRYT LQ+ F VNM+ALN +P + L ++ AFV FR Sbjct: 301 DGVRVVVELKRDAIGEVVLNQLYRYTQLQTSFGVNMLALNRGRPVQMNLRDVIFAFVEFR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ RRT++LL+KAR+RAHVL GL +A+ NLD V+ +IR +P+ ARR+L +W A+ Sbjct: 361 EEVITRRTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPAT 420 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D+ D I +IDD + + +GT LS+ Q RAIL+LRL RLTG+ R + +E + IK Sbjct: 421 DVIDFIAIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIK 480 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + LDIL+SR RL+G+++ ELL ++ RRT I+E + + ED I REDMVVTVS+ Sbjct: 481 DYLDILTSRPRLMGVLRDELLQTREAWANDRRTEIMESEFEHDIEDLIAREDMVVTVSYS 540 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPL+ YRAQ+RGGKGR+G+ RDED+V L++ ++H+ +LFF+S G VY+ K +R Sbjct: 541 GYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKTYR 600 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP G+PQ+RG+ ++N+L L +GE I T+MP P DESSW+ L+V+FAT G +RRN LSDF Sbjct: 601 LPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALSDF 660 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 INR+GK AMKLD D +++V C + +D+LL + G+ +RF ++ +R+F GR+S+GVR Sbjct: 661 TNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGRDSLGVR 720 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LAKGD+V+SM+I+ H D + + + + R+ ++ S+ + + Sbjct: 721 GIRLAKGDEVVSMSILHHVDYESVDGEQNERDVY-LRQAAWIRRGSGEGDEDASAPDVML 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E+R L E+F+L+V+EKG+GKRTS++++R++ R G+GI + DV+ N G +V F Sbjct: 780 REDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKN--GPVVTAF 837 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 PV DQI+LV+D G +IR PV++IR+A+R T+GVV+F +DE+VVSV + E+ D Sbjct: 838 PVTPTDQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDDDN 897 Query: 906 AESTE 910 E + Sbjct: 898 VEVAD 902 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 52/289 (17%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G ++R LS + R GK + + + D + + + VL + G Sbjct: 643 VMFATAAGTIRRNALSDFTNINRAGKR--AMKLDEGDRLIAVMPCNEGDDVLLAARSGKA 700 Query: 599 YKEKVWRLP-----------------------------------IGSPQARGKALINILS 623 + +V + G R L Sbjct: 701 IRFQVADVRLFRGRDSLGVRGIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAW 760 Query: 624 LNQGERITTIMPFPEDESSWNNLYV---------VFATKHGNVRRNKLSDF-IQINRSGK 673 + +G D + ++ + T+ G +R ++ + Sbjct: 761 IRRGSGEGDEDASAPDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQG 820 Query: 674 IA---MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 IA + + +++ T + I+L T GQ +R P+ IRV A R + GV + Sbjct: 821 IASMDVTAKNG-PVVTAFPVTPTDQIMLVTDGGQIIRCPVDDIRV-AARKTQGVVLFRVG 878 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + ++V+S+++V D + + +A + + Sbjct: 879 EDEKVVSVSLVGENGDDDNVEVADEATDAATGDGPTEAGPDEEQGDATE 927 >gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] Length = 915 Score = 981 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 556/902 (61%), Positives = 691/902 (76%), Gaps = 5/902 (0%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MSDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFG Sbjct: 61 SMYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGDPPAA RYTE +L K+A LLDD+ KDTVDF+ NYD S +EP VL A++PN+LVNG Sbjct: 121 SVDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNL EV+D CVA+IDNP I +D L +II GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY GRGSI++RG I+ DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+D Sbjct: 241 SAYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR GYRVVIELKR A ADV+LNQLY++T LQ+ F+ NM+AL+G +P+ TL +L Sbjct: 301 LRDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE VV RRTK+LLNKARDRAH+LVGLA+AVAN+DE++R+IR SPNP +AR LM Sbjct: 361 TIFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D++ +I LIDD + + DGT+ LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 421 SRDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L IEI + L+IL SR+R+ IIK EL +VK E TPRRT I+E ++EDED I REDM Sbjct: 481 KLKIEIADYLEILRSRARVQDIIKTELAAVKAEFGTPRRTAIIEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY KRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLPI +P +RGKALINIL L QGERITTIMP PEDESSW NL V+FAT GNVR Sbjct: 601 YKEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD +EI++V+ CT+ +D+LLT GQC+RFP++ +RVF G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+LA+GD+VIS++I+ H + DER Y+K A + + T + Sbjct: 721 RTSMGVRGIALAEGDKVISLSILRHVETTSDERTAYLKMRRAMSGETTTEEPVETEGEEA 780 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + +S+ER E+ +EQ +LTVS G+GKRTSSY++R + R GKGI A V+ N Sbjct: 781 AGA-IQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN-- 837 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I Sbjct: 838 GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIG 897 Query: 899 ES 900 E Sbjct: 898 EE 899 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 13/221 (5%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746 E+ ++ + G R P+SA R R G G+ + D V + + VL + Sbjct: 538 EDMVVTVSHAGYTKRVPLSAYRA-QRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSS 596 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + + G I E ++ + Sbjct: 597 RGQVYKEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTG 656 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G +R DF R GI A + +V V + D ++L + G IR P Sbjct: 657 GNVRRNKLSDFVDVRR--SGIIAMKLDDGE---EIVNVQICTERDDVLLTAAGGQCIRFP 711 Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V ++R+ R + GV + A+ ++V+S+ +R E + Sbjct: 712 VTDVRVFTGRTSMGVRGIALAEGDKVISLSILRHVETTSDE 752 >gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2] gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2] Length = 927 Score = 981 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 540/917 (58%), Positives = 676/917 (73%), Gaps = 9/917 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++ + I VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MADNDDTGPGAPGSDIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + ++ YVKCARI G+VMGKYHPHG++AIYDAL RMAQ +S+RL LI+GQGNFGSV Sbjct: 61 HEQNHTPDRPYVKCARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL + A LL+D+ DTVDF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTESRLARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D +A+IDNP++ ++ LM + GPDFPTG ILGRTGI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAILGRTGIQSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++ R +E +RE ++VTEIPYQ+NK++++EKIA+LVREKR+ I+DLR Sbjct: 241 YLTGRGSVLTRAKVEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR A A+V+LNQL+RYT+LQS F+ NM+ALNG +PE TL L A Sbjct: 301 DESDRDGMRIVIELKRDAVAEVVLNQLWRYTALQSSFACNMIALNGGRPEMLTLKDFLTA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S + AR LM R Sbjct: 361 FVDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMAR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SW A D+ L+ LI D + + +G LSE Q RAILELRL RLT LGR++I LN L Sbjct: 421 SWPAHDMAPLVLLIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +EI + L+IL SR RL I+K+E+L+VK TPRRT I++ ++DED I REDMVV Sbjct: 481 AVEIADYLEILHSRERLFSIVKEEMLAVKAAHATPRRTIILDSATGVDDEDLIQREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GYVKRVPL+ YRAQRRGGKGRS + RDEDFV LF+ STH VLFFSS G VYK Sbjct: 541 TVSHHGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+ +PQARGKAL+N+L L QGERITTIMP PE+E +W L V+FAT G VRRN Sbjct: 601 EKVWRLPLAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF Q+NR+GKIAM++D +EI+ V+ C ++ D+LLTT GQC+RFP++ +RVF GR+ Sbjct: 661 KLSDFAQVNRAGKIAMRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTDVRVFKGRD 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S+GVRGISL++GD+VIS+AI+ H +AD ERI Y+K A S + + Sbjct: 721 SMGVRGISLSEGDRVISLAILRHTEADSGERIAYLKMRRAVAGEASAEAGAESPADAQGE 780 Query: 781 VEGN------ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 +S +R + EQ ILT+S G+GKRTSSY++RI+ R GKGI A V+ Sbjct: 781 DGAEDAGPQSLSPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNP 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G LVA PV D D+I+LV++ G LIR PV IR+A R T+GV++F+T DE+VVSV Sbjct: 841 RN--GLLVASMPVEDGDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTGADEQVVSV 898 Query: 895 ERIRESEIV-DEAESTE 910 ERI E + E E E Sbjct: 899 ERITEEDAARGETEEGE 915 Score = 55.2 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETC-TQENDI 696 S + ++ + +G +R ++ G +AM ++ R+ +L ++I Sbjct: 798 RMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDEI 857 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L T GQ +R P+ IRV AGR + GV + +QV+S+ + DA E Sbjct: 858 MLVTNGGQLIRCPVEGIRV-AGRGTQGVIVFNTGADEQVVSVERITEEDAARGETEEGEP 916 Query: 757 HMSAQRRLISG 767 Sbjct: 917 SSDPSTEPGEA 927 >gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] Length = 913 Score = 979 bits (2530), Expect = 0.0, Method: Composition-based stats. Identities = 558/905 (61%), Positives = 685/905 (75%), Gaps = 4/905 (0%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 TE S + GI VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 4 TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQ +S+R+ LI+GQGNFGSVD Sbjct: 64 ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD AA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ I+ GPDFPTG +ILGR GI++AY Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIILGRQGIRSAY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRGSIV+RG IE DRE I+++EIPYQVNKA M+E+IAELVR+KRI I+DLRD Sbjct: 244 HLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G+RVV+ELKR A +V+LNQLYRYT LQ+ F NMVAL+ +P+ L +L F Sbjct: 304 ESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +AFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R Sbjct: 364 IAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRD 423 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ +I LIDD + DGT LS Q +AIL+LRL RLT LGR++I EL+ L Sbjct: 424 WPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IEI + LDIL SR+R+ IIK EL +VK E TPR+T I+E ++EDED I REDMVVT Sbjct: 484 IEIADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GYVKRVPLS YRAQ+RGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKE Sbjct: 544 VSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLP+ +P ARGKA+INIL L QGERITTIMP PEDESSW NL V+FAT G VRRNK Sbjct: 604 KVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNK 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+ + RSG IAMKL + I+ V+ CT+ +D+LLT GQC+RFP S +RVF+GR S Sbjct: 664 LSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTS 723 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITSLKN 777 +GVRGI+LA+GD+VIS++I+ H DA ER Y+K A RR +G+ E Sbjct: 724 MGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + + ++ E R E+ EQF+LTV+ +G+GKR+SS++FR+S R GKGIRA+D +K+ E Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGE 843 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IG LVA FPV +DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA+ E VVSVE I Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHI 903 Query: 898 RESEI 902 RE Sbjct: 904 REENE 908 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 58/214 (27%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 ADY + + + A + G + + + + E ++L +E ++TVS Sbjct: 487 ADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVTVSH 546 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL------------------------ 841 G+ KR +R R GKG + + + L Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 842 --------------VAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869 + + P+ + ++ + GT+ R +++ Sbjct: 607 RLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNKLSD 666 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R+ G++ + E +V V+ E + V Sbjct: 667 FVDVRRS--GIIAMKLGEGEAIVDVQICTERDDV 698 Score = 54.4 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 28/282 (9%) Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGLLDMEDEDCI----VREDMVV 540 E ++ + + K + RR+ I+ L + D V+ Sbjct: 640 EDESSWANLDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVL 699 Query: 541 TVSHLGYVKRVPLSVYR------AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + G R P S R + G + + F + + Sbjct: 700 LTAGGGQCIRFPASDVRVFSGRTSMGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQ 759 Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G + + P + +A LSL +G + +V+ T Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810 Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707 G +R+ +F + I KL +++ + I+L + GQ +R Sbjct: 811 TQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 P+ IR R S GVR + A+G+ V+S+ + + + + Sbjct: 871 VPVEGIR-ITSRASKGVRVFTTAEGEHVVSVEHIREENENGN 911 >gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] Length = 910 Score = 977 bits (2525), Expect = 0.0, Method: Composition-based stats. Identities = 555/913 (60%), Positives = 683/913 (74%), Gaps = 8/913 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+ + I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 1 MAENDPTGAAPPASDIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSA 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +KYVK ARI G+V+G YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSV Sbjct: 61 FESGHLPERKYVKSARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K A LL D+ K+TVDF PNYD S +EP VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTESRLAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE++D CVA+ID+P + ++ L EI+ GPDFPTG +ILGR G + A Sbjct: 181 GIAVGMATNIPPHNLGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMILGRAGTRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGS+++R SH+E+ +RE ++ TEIPYQVNKA ++EKIAELV+EKR+ I+DLR Sbjct: 241 YATGRGSVIMRAKSHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V+E+KR A ADV+LNQLYR+T LQS F NMVALNG +PE L +L+A Sbjct: 301 DESDRSGMRIVVEIKRDAMADVVLNQLYRFTPLQSSFGCNMVALNGGRPELMNLKDLLQA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P AR LM R Sbjct: 361 FVDFREEVVSRRTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI LI L+DD + + DGT LSE Q RAIL+LRL RLT LGRD++ +EL +L Sbjct: 421 DWPAHDIAPLIALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI + LDIL SR+R+ GI+K EL V+++ TPR+T IV+ +EDED I REDMVV Sbjct: 481 ADEIADYLDILRSRARIQGIVKGELAEVREQFATPRKTEIVDFDGSVEDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GYVKRVPLS YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YK Sbjct: 541 TVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 EKVWRLP+ +P ARGKAL+NIL L + ERITTIMP PEDE+SW L V+FAT GNVRR Sbjct: 601 EKVWRLPMAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF +NR+GKIAMKLD D I+ VE C + ++LLTT LGQC+RFP+ +RVF GR Sbjct: 661 NKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +S GVRGI L K D+VISM I+ DA +ER Y+K +R + E + D Sbjct: 721 DSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLK---MRRAVTGESEENGDAEAEDG 777 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + IS +R E+ EQ++LT+SE+GFGKR+SS+++R S R GKGI A V+ N G Sbjct: 778 AEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARN--G 835 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +LVA FPV +DQI+LV+D G LIRVPV++IRI RA++GV +F+TAKDE+VVSVE I Sbjct: 836 SLVASFPVEASDQIMLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVVSVEHIEG 895 Query: 900 SEIVDEA--ESTE 910 + EA E E Sbjct: 896 EDEGAEAGPEGGE 908 >gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] Length = 945 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 595/901 (66%), Positives = 717/901 (79%), Gaps = 5/901 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDQKTPS-GPITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G WN+KYVK +RI G+VMGKYHPHG+ +IYDA+ RMAQ WS+ +LI+GQGNFGS+ Sbjct: 60 HEGGYHWNRKYVKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSI 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K AH +++D+ KDTVDF+ YD S +EP VL AR+PN+LVNG G Sbjct: 120 DGDPPAAMRYTESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV+GC+A++DNP IDL LM+II GPDFPT +ILG+ GI+ A Sbjct: 180 GIAVGMATNIPPHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIILGQAGIRQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS+++RG H+E DRE I++TE+PYQVNK++M+EK+AELVR+KRI I+DLR Sbjct: 240 FETGRGSVIMRGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+ADVI+NQLYRYT LQS F VNMVALNG KPE LI +LKA Sbjct: 300 DESDRQGYRVVIELKRDANADVIINQLYRYTPLQSSFGVNMVALNGGKPELMNLIDMLKA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+V+ RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM R Sbjct: 360 FVSFREDVITRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I DGT LSE Q RAILELRLARLT LGRD+I +EL + Sbjct: 420 RWPAMDVEVLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKI 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ L+IL SR R+ I+K EL++V+DE PRRT I EG DM+DED I REDMVV Sbjct: 480 GEEIKDFLEILGSRIRVQQIVKDELIAVRDEFGVPRRTVIAEGGPDMDDEDLIAREDMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 540 TVSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L +GERIT+IMP PEDE+S L V+F+TK G VRRN Sbjct: 600 EKVWRLPIGTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKLD DEIL+VETC + +D+LLTT LGQC+RF + +RVFAGR Sbjct: 660 KLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLK 776 NSVGVRGI+L +GD +ISM IV H DA+ ER Y+K A+RR GD EE+ + Sbjct: 720 NSVGVRGINLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVG 779 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 D+ +G +S+ER ELK +EQFILTVSEKG+GKR+SSY+FRIS R GKGIRATD SK Sbjct: 780 EDAVEDGELSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTG 839 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 EIG L+A FPV DQI++VSD G +IRVPV IR+ASRATKGV IF+TAKDERVVSV+R Sbjct: 840 EIGPLIAAFPVEPGDQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSVDR 899 Query: 897 I 897 I Sbjct: 900 I 900 Score = 54.8 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 87/256 (33%), Gaps = 10/256 (3%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D V+ + LG R + R G+ GV + + ++ V +S Sbjct: 694 DDVLLTTALGQCIRFSVDDVRV--FAGRNSVGVRGINLGQGDTIISMTIVHHVDAEASER 751 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 Y ++ + G L + E +++ ++ G Sbjct: 752 AAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGELSDERYAELKAREQFILTVSEKGY 811 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI------LSVETCTQENDILLTTKLGQCVRFPI 710 +R+ +F +I+ G ++ + ++ + I++ + GQ +R P+ Sbjct: 812 GKRSSSYEF-RISGRGGKGIRATDTSKTGEIGPLIAAFPVEPGDQIMMVSDGGQVIRVPV 870 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 IR A R + GV + AK ++V+S+ + ++D + + D Sbjct: 871 GGIR-MASRATKGVTIFNTAKDERVVSVDRINEPESDEELEEGVEGETVEGVADAAPDAN 929 Query: 771 EITSLKNDSSVEGNIS 786 + S+ E S Sbjct: 930 GTPAPDASSAGEEPQS 945 >gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] Length = 917 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 553/916 (60%), Positives = 685/916 (74%), Gaps = 12/916 (1%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + + I +SI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF Sbjct: 1 MSDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A+I++P + +D L+ II GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+D Sbjct: 241 LAYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVVIEL+R A DV+LNQLYR+T LQ+ F NMVAL+ +P L +L Sbjct: 301 LRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE+VV RRTKYLL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 TLFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + LDIL SR+R+ I+K EL++VK E TPR+T I+E ++EDED I REDM Sbjct: 481 KLALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLPI P RGKALINIL L QGERITTIMP PEDE SW L V+FAT GNVR Sbjct: 601 YKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF G Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GVRGI+LA GD+VIS+ I+ H +A ER Y+K A RR G+ +++ + Sbjct: 721 RTSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEV 780 Query: 779 SSVEG--------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ +S +R E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A Sbjct: 781 TAEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAM 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 V+ N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F TA DE+ Sbjct: 841 SVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEK 898 Query: 891 VVSVERIRESEIVDEA 906 VVSVE I E+E + Sbjct: 899 VVSVEHIPEAEEAENG 914 >gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] Length = 925 Score = 974 bits (2518), Expect = 0.0, Method: Composition-based stats. Identities = 556/922 (60%), Positives = 686/922 (74%), Gaps = 18/922 (1%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF Sbjct: 1 MSDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGD PAA RYTE RL K A LLDDL KDTVD++ NYDGSF EP VL A++PN+LVNG Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L II GPDFPTG +ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSIV+RG IE DRE I+++EIPYQVNKA M+E+IA+LVREK+I I+D Sbjct: 241 LAYHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G+RVVIEL+R A DV+LNQLYR+T LQ+ F NMVAL+ +P+ L +L Sbjct: 301 LRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FVAFRE+VV RRTKYLLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 361 TLFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELD 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +EI + LDIL SR+R+ I+K EL++VK E TPR+T I+E ++EDED I REDM Sbjct: 481 KLALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G V Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLPI P RGKALINIL L QGERITTIMP PEDE SW L V+FAT GNVR Sbjct: 601 YKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------ 712 RNKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLTT GQC+RFP+S Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKE 720 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +RVF GR+S+GVRGI+LA D+VIS++I+ H DA +ER Y++ +A RR + Sbjct: 721 FGVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRRGGVEERA 780 Query: 771 EITSLKNDSSVEG------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 + E + E+R E+ EQF+LT+SE G+GKRTSS+++R +NR G Sbjct: 781 AVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGG 840 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KGI A V+ N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F Sbjct: 841 KGIVAMSVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFD 898 Query: 885 TAKDERVVSVERIRESEIVDEA 906 TA DE+VVSVE I E+E + Sbjct: 899 TADDEKVVSVEHIPEAEETENG 920 >gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] Length = 927 Score = 973 bits (2515), Expect = 0.0, Method: Composition-based stats. Identities = 556/910 (61%), Positives = 681/910 (74%), Gaps = 13/910 (1%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 T+ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 4 TDDNKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD Sbjct: 64 ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD AA RYTE RL K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG Sbjct: 124 GDSAAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 183 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIILGRAGIRLAY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRGSIV+RG IE T DRE I+++EIPYQVNKA M+E+IAELVREK+I I+DLRD Sbjct: 244 HTGRGSIVMRGKVAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G+RVVIEL+R A DV+LNQLYR+T LQ+ F NMVAL+ +P+ L +L+ F Sbjct: 304 ESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLRLF 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 VAFRE+VV RRTK+LLNKARDRAHVLVGLAIAVAN+DE++R+IR SP+P TAR LM R Sbjct: 364 VAFREQVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARD 423 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ +I LIDD + + +DGT LS Q +AIL+LRLARLT LGR++I EL+ L Sbjct: 424 WEAKDVAAMITLIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLA 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IEI + L+IL SR+R+ IIK+EL +VK E TPR+T I+E ++EDED I REDMVVT Sbjct: 484 IEIADYLEILRSRARVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKE Sbjct: 544 VSHAGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLPI P RGKALINIL L QGERITTIMP PEDESSW L V+FAT G VRRNK Sbjct: 604 KVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNK 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+ + RSG IAMKLD + I+ V+ CT +D+LLT GQC+RF ++ +RVF R S Sbjct: 664 LSDFVDVRRSGIIAMKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRAS 723 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE---------- 771 +GVRG++LA GDQVIS+ I+ H DA+ ER Y+K A RR +G+ E Sbjct: 724 MGVRGMALANGDQVISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAE 783 Query: 772 -ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + ++S +R E+ EQF+LT+SE GFGKRTSS+++R + R GKGI A Sbjct: 784 VADAEPEEVDAIASLSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAM 843 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 V+ N G LVA FPV + DQI+LV+DKG LIR PV IRI R+T+GV +F+TA+DE Sbjct: 844 AVNARN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEH 901 Query: 891 VVSVERIRES 900 VVSVERI E Sbjct: 902 VVSVERIGED 911 Score = 97.2 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 13/216 (6%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746 E+ ++ + G R P+S R R G G+ + D V + + VL + Sbjct: 538 EDMVVTVSHAGYVKRVPLSTYRA-QRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSS 596 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + + G I E E ++ + + Sbjct: 597 RGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTR 656 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G +R DF R GI A + + A+V V D D ++L + G IR Sbjct: 657 GTVRRNKLSDFVDVRR--SGIIAMKLDEGE---AIVDVQICTDRDDVLLTAAGGQCIRFA 711 Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901 V ++R+ SRA+ GV + A ++V+S+ +R + Sbjct: 712 VTDVRVFQSRASMGVRGMALANGDQVISLTILRHFD 747 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 58/214 (27%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 ADY E + + + + + +++ E ++L +E ++TVS Sbjct: 487 ADYLEILRSRARVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVTVSH 546 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835 G+ KR +R R GKG + Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869 N G L+ + P+ + ++ + +GT+ R +++ Sbjct: 607 RLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNKLSD 666 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R+ G++ + E +V V+ + + V Sbjct: 667 FVDVRRS--GIIAMKLDEGEAIVDVQICTDRDDV 698 >gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 909 Score = 973 bits (2515), Expect = 0.0, Method: Composition-based stats. Identities = 793/909 (87%), Positives = 857/909 (94%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTEHI+ +DEE EKGITSVSI +EMQNSYLTYAINVILGRAIPDLRDGLK VHRRILFGM Sbjct: 1 MTEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS+ Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV++GC+A+IDNPDIDLD +M+II GPDFPTGA+ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGSIVIRGV+HIEKT GDRE+I+VTEIPYQVNK+AMLEKIAELVREKRIVDI+DLR Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI ILK Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIEILKN 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEVV RRTKYLLNKARDRAHVLVGLAIAV+NLDEVVRIIRFSPNPE+ARRELMQR Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +WNA DIKDLIDLIDDSSYTI SDG MYLSEVQTRAILELRLARLTGLGRDDIR+ELNSL Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+CL+ILSSRSRLL IIKQEL +KDELDTPRRT IV+GLLDMEDEDCIVREDMVV Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTPRRTEIVDGLLDMEDEDCIVREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GYVKRVPLS+YRAQRRGGKGRSGVV R+EDFVTDLFIV+THT VLFFSSLGFVYK Sbjct: 541 TVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIGSPQ+RGKALINILSL QGERITTIMP PEDESS ++LYVVFATK GNVRRN Sbjct: 601 EKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+Q+NRSGKIAMKLD DEILSVETC + ND+LLTTKLGQC+RF I+ +RVF+GRN Sbjct: 661 KLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDVRVFSGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 SVGVRGI LA+ DQVISMAIVLHADADYDER+CYMK+M++ RRLI+ D +E LKNDSS Sbjct: 721 SVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEGGVLKNDSS 780 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EG ISEERC+ELK KEQFILTVSEKGFGKRTSSYDFRIS+R GKGI ATD SK++EIG Sbjct: 781 IEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGP 840 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L++ FPVND DQIILVSDKGTLIRVPVN+IRIASR+TKGVVIFSTAKDERVVSVERI ES Sbjct: 841 LISAFPVNDKDQIILVSDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISES 900 Query: 901 EIVDEAEST 909 +I+D +E Sbjct: 901 DIIDVSEEE 909 >gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4] gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4] gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4] gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens DM4] Length = 911 Score = 972 bits (2513), Expect = 0.0, Method: Composition-based stats. Identities = 553/901 (61%), Positives = 674/901 (74%), Gaps = 7/901 (0%) Query: 1 MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL Sbjct: 1 MADDNDQPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 F + G ++YVK ARI G+V+GKYHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNF Sbjct: 61 FAAHESGHLPERRYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GSVDGDP AA RYTE RL K A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVN Sbjct: 121 GSVDGDPAAAMRYTESRLAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GGIAVGMATNIP HNLGE++D C+A+ID+P + ++AL EI+ GPDFPTG +ILGR G Sbjct: 181 GAGGIAVGMATNIPPHNLGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLILGRAGT 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AYATGRGSI++R SHIE+ +RE ++ TEIPYQVNKA ++EKIAELV+EKR+ I+ Sbjct: 241 RQAYATGRGSIIMRAKSHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 DLRDESDR G R+V+E+KR A A+V+LNQLYRYT LQS F NMVALNG +PE L + Sbjct: 301 DLRDESDRDGMRIVVEIKRDAMAEVVLNQLYRYTPLQSSFGCNMVALNGGRPELMNLKDL 360 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L AF FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR L Sbjct: 361 LLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREAL 420 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M R W A DI LI L+DD Y + DGT LSE+Q RAIL+LRL RLT LGRD++ +EL Sbjct: 421 MARDWPAHDIAPLIALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDEL 480 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 L EI + LDIL SR R+ I+K EL V+ TPR+T I++ +EDED I RED Sbjct: 481 KKLADEIADYLDILRSRVRIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIARED 540 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVTVSH GYVKRVPLS YRAQRRGGKGRSG+ RDEDFVT LF+ STHT VLFFS G Sbjct: 541 MVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQ 600 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGN 656 YKEKVWRLP+ +P ARGKAL+NIL L ERI+TIMP PEDE+SW+ L V+FAT GN Sbjct: 601 AYKEKVWRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATASGN 660 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 VRRNKLSDF +NR+GKIAMKLD D I+ VE C E ++LLTT LGQC+RFP+ +RVF Sbjct: 661 VRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVF 720 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR+S GVRGI+LA+ D+VISMAI+ DA +ER Y+K A +G+ E + Sbjct: 721 KGRDSTGVRGINLAQDDKVISMAILNAFDASPEERAGYLKMRRAVIGD-AGEAEAEPAEA 779 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++S IS ER E+ EQF+LT+S++GFGKR+SSY++R S R GKGI A V+ N Sbjct: 780 EEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARN 839 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV +DQI+LV++ G LIRVPV++IRI RA++GV +F+T K ERVVSVE Sbjct: 840 --GNLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEH 897 Query: 897 I 897 I Sbjct: 898 I 898 >gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 906 Score = 972 bits (2512), Expect = 0.0, Method: Composition-based stats. Identities = 591/889 (66%), Positives = 716/889 (80%), Gaps = 4/889 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ + G WN+KYVK AR +VMGK Sbjct: 1 MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+ Sbjct: 61 YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ YD S EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG +IE+ DRE Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGNDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+RDESDRQGYRVVIELKR A ADVIL Sbjct: 241 SIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F NMVALNG KPE TL +LKAFV+FREEV+ RRTK+LL KARDRA Sbjct: 301 NQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD + I +D Sbjct: 361 HVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRINAD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR+R+ I+K E Sbjct: 421 GTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVKDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +V+DE TPRRT + +G DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGK Sbjct: 481 LAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RGKALIN+L L Sbjct: 541 GRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683 QGERITTIMP PEDE+SW L V+FAT G VRRNKLSDF+Q+NR+GKIAMKL + DE Sbjct: 601 EQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 IL VETCT +D+LLT GQC+RF + +RVF RNSVGVRGI++A+ D++ISM+++ + Sbjct: 661 ILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEN 720 Query: 744 ADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 DA ER Y+K +G+ EEI + E +S+ER + LK EQ++ Sbjct: 721 VDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYV 780 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK EIG LVA FPV ++DQI+LVSD G Sbjct: 781 LTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLVSDGG 840 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 T+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E + +E+E T Sbjct: 841 TVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 889 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 YV+ T++G +R+ DF K +++ ++ I+L Sbjct: 777 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLV 836 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G +R P++ IR FA R + GV + A+G++V+S+ + +D + Sbjct: 837 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEETVEGGTE 895 Query: 760 AQRRLISGDTE 770 + + E Sbjct: 896 SAPDAGPENAE 906 >gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] Length = 917 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 541/901 (60%), Positives = 678/901 (75%), Gaps = 7/901 (0%) Query: 1 MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M ++ I VSITDE+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MADNDTPPQGGATPSDIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK+Y K AR+ G+V+GKYHPHGN ++YDAL RM Q +S+R+ LI+GQGNFGS Sbjct: 61 MHENGYEWNKQYRKSARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGDPPAA RYTE RL+K LLD+LG+DTVDF+ NYD S EP VL AR+PN+LVNG Sbjct: 121 VDGDPPAAMRYTEVRLEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+DG VA++D+P +D + L++ I GPDFPTGA+I+GR+GI+ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIMGRSGIRQ 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSI++R + IE +RE I++TEIPYQVNKA M+EKIAELVR+KR+ IA++ Sbjct: 241 AYMTGRGSIMMRARATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G +P TL L Sbjct: 301 RDESDREGMRVVIEVKRDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPAVMTLHDTLT 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+AFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DE++++IR +P+P TAR LM+ Sbjct: 361 AFIAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D+ L+ LI D + + SDGT LS Q RAIL+LRL RLT LGRD+I +EL+ Sbjct: 421 RHWPAKDVASLVALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI E L+IL+SR R+ II++ELL+++ E +TPRRT I EG D++DED I REDMV Sbjct: 481 LALEIAEYLEILASRPRMRAIIREELLALRAEFNTPRRTEITEGFGDLDDEDLIAREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRS + RDEDFVT LF+ STH VLFFSS G VY Sbjct: 541 VTVSHAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP +PQARGKALINIL L ERIT+I+P PE+ + ++FAT G VRR Sbjct: 601 KLKVWRLPAAAPQARGKALINILPLQPDERITSIVPLPENLEEHSLWQIMFATTGGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 N L+DF Q+NR+GKIAMKL+ ++I SV+ C + D+LLTT G C+RFP+ +R+F GR Sbjct: 661 NALADFSQVNRNGKIAMKLEEGEQIASVQLCNEHQDVLLTTANGACIRFPVPEVRLFKGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +SVGVRGI L +GD++ISMAI+ H DA +ER+ Y++ R + + I Sbjct: 721 DSVGVRGIRLEEGDRLISMAIINHTDAAAEERVQYLRQS----RAQAAEDAPIELEGEAP 776 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG + + E++ EQFILT+SE G+GKRTSSY++R++ R GKGI A V++ N G Sbjct: 777 AAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--G 834 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D DQI+LV+D G LIR PVN IRI R+++GV++F TA DERVVSVE I E Sbjct: 835 KLVASFPVRDADQIMLVTDGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSVEHISE 894 Query: 900 S 900 Sbjct: 895 D 895 Score = 57.1 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 80/235 (34%), Gaps = 13/235 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V+ + G R P+ R G+ GV + L ++ + Sbjct: 693 EHQDVLLTTANGACIRFPVPEVR--LFKGRDSVGVRGIRLEEGDRLISMAIINHTDAAAE 750 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 Y + + L + P E N +++ +++ Sbjct: 751 ERVQYLRQS-------RAQAAEDAPIELEGEAPAAEGKLDPVKFLEMETNEQFILTLSEN 803 Query: 655 GNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R ++ R G +AM ++ ++++ + I+L T GQ +R P++ Sbjct: 804 GYGKRTSSYEYRVTGRGGKGIVAMAVNERNGKLVASFPVRDADQIMLVTDGGQLIRCPVN 863 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 IR GR+S GV A ++V+S+ + +A + + + Sbjct: 864 GIR-IVGRSSQGVIVFDTAADERVVSVEHISEDEAGEATEGEGEETGAPDESPEA 917 >gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] Length = 918 Score = 970 bits (2507), Expect = 0.0, Method: Composition-based stats. Identities = 553/914 (60%), Positives = 674/914 (73%), Gaps = 9/914 (0%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 T+ + I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM Sbjct: 6 TDDRKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 65 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD Sbjct: 66 ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 125 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD PAA RYTE RL K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG Sbjct: 126 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 185 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D CVA+I++P + +D L +II GPDFPTG +ILGR GI+ AY Sbjct: 186 IAVGMATNIPPHNLGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIILGRAGIRLAY 245 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRGSIV+RG IE DRE I+++EIPYQVNKA M+E+IAELVREK+I I+DLRD Sbjct: 246 HTGRGSIVMRGKVSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 305 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G+RVVIEL+R A ADV+LNQLYR+T LQ+ F NMVAL+ +P L +L F Sbjct: 306 ESDRDGFRVVIELRRDAVADVVLNQLYRFTPLQTNFGANMVALDAGRPLLMNLKDLLTLF 365 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 VAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R Sbjct: 366 VAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRD 425 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ L Sbjct: 426 WPAQDVAAMITLIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLA 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +EI + L+IL SR+R+ IIK EL +VK E TPRRT I+E ++EDED I REDMVVT Sbjct: 486 VEIADYLEILRSRARVQTIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GYVKRVPLS YRAQRRGGKGR+G+ R+EDFV+ LF+ STHT VLFFSS G VYKE Sbjct: 546 VSHAGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKE 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLP+ P RGKALINIL L QGERI TIMP PEDESSW V+FAT G VRRNK Sbjct: 606 KVWRLPLAPPNGRGKALINILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNK 665 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+ + RSG IAMKLD + I+ V+ CT +D+LLT GQC+RF ++ +RVF R S Sbjct: 666 LSDFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRAS 725 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-------DTEEITS 774 +GVRG++LA GDQVIS+ I+ H DA ER Y+K A RR +G E Sbjct: 726 MGVRGMALANGDQVISLTILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVEAAVE 785 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + ++ +S ER E+ EQF+LT+SE GFGKRTSS+++R + R GKGI A V+ Sbjct: 786 PEEETDGLAALSPERYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNA 845 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G LVA FPV + DQI+LV+DKG LIR PV IRI R+T+GV +F+TA+DE VVSV Sbjct: 846 RN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 903 Query: 895 ERIRESEIVDEAES 908 E I E + Sbjct: 904 EHIGEEAENGNGDG 917 >gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42] Length = 908 Score = 970 bits (2506), Expect = 0.0, Method: Composition-based stats. Identities = 620/872 (71%), Positives = 736/872 (84%), Gaps = 1/872 (0%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAI Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDF Sbjct: 61 YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 R NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC+A+I++P I+L Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GDREQI++TEIPY Sbjct: 181 PELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT L Sbjct: 241 QVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIA Sbjct: 301 QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 VAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I D T LSE Q Sbjct: 361 VANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQ 420 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K EL +V+DE Sbjct: 421 ARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDEFG 480 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RD Sbjct: 481 TPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRD 540 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 EDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L GERITTI Sbjct: 541 EDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI 600 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQ 692 +P PEDE+SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL + DEILSVETCT Sbjct: 601 LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTD 660 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+ ER Sbjct: 661 RDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERA 720 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 Y+K +A+RR I D E+I + + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+ Sbjct: 721 AYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRS 780 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G LIRVPV IRI Sbjct: 781 SSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI 840 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ASRATKGV IFSTAKDE+VVSVERI E E D Sbjct: 841 ASRATKGVTIFSTAKDEKVVSVERISEPEEDD 872 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 6/145 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 +V+ ++ G +R+ DF K E+++ + I+L Sbjct: 765 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 824 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GQ +R P+ IR A R + GV S AK ++V+S+ + + D E + Sbjct: 825 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDDTEGAVDAAEAA 883 Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784 A E + + Sbjct: 884 AGADETPFADETPVADGDPGGAAEE 908 >gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] Length = 911 Score = 968 bits (2503), Expect = 0.0, Method: Composition-based stats. Identities = 544/913 (59%), Positives = 671/913 (73%), Gaps = 6/913 (0%) Query: 1 MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M + I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI+F Sbjct: 1 MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL LI+GQGNFG Sbjct: 61 SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVD DPPAA RYTE RL K A LL+DL + TVDF+PNYD EP VL AR+PN+LVNG Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D +A+ID PD+ + LMEI+ GPDFPT A ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATILGRGGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 NAY+TGRGSI++R + IE +RE I+ TEIPYQVNKAA++E+IAELVREK+I +AD Sbjct: 241 NAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F VNM+ALNG +PE TL +L Sbjct: 301 LRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGRPELLTLKDVL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 AFV FRE VV RRTK+ LNKARD AH+ VGLAIAVAN+DEV+R+IR S + AR LM Sbjct: 361 VAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +R W A D+ L+ LI D + + DGT+ LSE Q RAIL+LRL RLT LGR++I LN Sbjct: 421 ERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L EI E L+IL SR +L GI+K E+++VK TPRRT+IV+G D+EDED I REDM Sbjct: 481 KLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIAREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ ++EDFV LF+ STHT VLFFSSLG Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRA 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ +PQARGKAL+N+L L Q ERITTIMP PEDESSW L +FAT G VR Sbjct: 601 YKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF + RSG IAMKLD + I+ V T ++ +D+LLTT+ GQC+RFP++ +RVF Sbjct: 661 RNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQS 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+S+GVRG++LA D+VIS++I+ H +A +ER Y+K +AQRR + + Sbjct: 721 RSSMGVRGVALAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEA 780 Query: 779 SSVEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +SE R ++++ EQ ILTVSE G+GKR+SS+++RI+ R GKGI A V+ N Sbjct: 781 EESSASIELSEARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARN 840 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV +I+LV+D G LIR PV IRI R T+GV++F TA+ ERVVSVE Sbjct: 841 --GKLVASFPVGSGAEIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVFDTAEGERVVSVEH 898 Query: 897 IRESEIVDEAEST 909 I E+ E Sbjct: 899 IGETGAEAEVAEE 911 >gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] Length = 943 Score = 968 bits (2501), Expect = 0.0, Method: Composition-based stats. Identities = 510/900 (56%), Positives = 680/900 (75%), Gaps = 9/900 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + + I+ VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSTNTPKPIDLD---ISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G E+NK Y K ARI G+VMGKYHPHG+ +IYDA+ RM Q++++RL LI+GQGNFGS+ Sbjct: 58 KESGYEFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KAAH LLDD+ K+TVDF+PNYD + +EP+VL AR+PN+LVNG G Sbjct: 118 DGDRAAAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C A+IDNP + + L+E++ GPDFPTG ILGR+G++ A Sbjct: 178 GIAVGMATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS+++RG +H E SG R+ I+VTE+PYQVNKA+M+EKIAELVREK++ I+D+R Sbjct: 238 HLTGRGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIE+KR A A+V+LNQL+RYT LQ+ F VNM+ALNG KPE L I++A Sbjct: 298 DESDRRGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEV+ RRT + L KAR+RAH LVGLAIAVANLD V+++IR +P+P+ AR LM R Sbjct: 358 FITFREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LID+ + DG LSE+Q RAIL+LRL RLTGL RD + EL + Sbjct: 418 DWPAMDVEPLIKLIDEPG-RMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEI 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G +I+E L IL SR+RL I++ EL+ +K+ TPRRT + E + + ED I RE+MVV Sbjct: 477 GQQIEEYLHILRSRARLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV++ GY+KRVPL+ YRAQRRGG+GR+G+ MRDEDFVT +F+V+TH +LFFSS G VYK Sbjct: 537 TVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYK 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+RLP+G+PQARGKA++NI+ LN+GERITT+MP PEDE +W+ L V+FAT+ GNVRRN Sbjct: 597 MKVYRLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +LSDF + +GKIAMKLD D ++ V TCT E D+LLTT LG+ +RF + +RVFAGR Sbjct: 657 RLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFAGRT 716 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GVRGI LA+ D+V ++I+ H +A + R Y+K SA RR E + Sbjct: 717 STGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRA--SGETEGEDDSTLDA 774 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G +S E ++L+ +E+F+LTV+ +GFGKRTS+Y++R++ R G+GI ++S+ N G Sbjct: 775 EPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERN--GT 832 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRE 899 +VA FP+ + DQ+++++D G LIR+PVN++RIA R T+GV +F E VVSV R+ E Sbjct: 833 VVAAFPIANEDQVMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 5/154 (3%) Query: 643 WNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIA-MKLDS-RDEILSVETCTQENDILLT 699 +++ T G +R ++ + IA +++ +++ E+ +++ Sbjct: 789 QREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGTVVAAFPIANEDQVMMI 848 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHM 758 T GQ +R P++ +R AGR + GV L G+ V+S+A + + + D+ + Sbjct: 849 TDGGQLIRMPVNDVR-IAGRKTQGVTLFRLSDDGEHVVSVARLPEMNGNGDDGEGDDETP 907 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + + + + G E + Sbjct: 908 DESLAEDANGGRDESGEASGLPPAGQSPERNGDD 941 >gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506] gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506] Length = 918 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 546/907 (60%), Positives = 682/907 (75%), Gaps = 12/907 (1%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ + ++ I VSITDE+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + + Y K AR++G+ MGKYHPHGN AIYDAL R+AQD+S+RL LI+GQGNFGS Sbjct: 61 MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAAERYTE RL K A LLDDL KDTVDF+ NYDG QEP VL AR+PN+LVNG Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEVVD CVA+ID PD+D++ L++ I GPDFPTGA+ILGR+GI+ Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALILGRSGIRQ 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+R + IE+ DR+ I+VTEIPYQVNKA M+E+IAELVR+KR+ IA++ Sbjct: 241 AYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAEI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDES R+G RVV E+KR A ADV+LN LYR ++LQ+ F NMVALNG KP TL +L Sbjct: 301 RDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGKPALMTLHDLLT 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFVAFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+ IR SP+P TAR LM Sbjct: 361 AFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREALMT 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D+ LI LIDD + + DGT LS Q RAIL+LRL RLT LGRD++ +EL+ Sbjct: 421 RDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADELDK 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +EI++ LDIL+SR R+ I+K ELL+VK E TPR+T I + D EDED I REDMV Sbjct: 481 IAVEIRDYLDILASRERIRTIVKDELLAVKAEFGTPRKTEITDAEGDFEDEDLIAREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS YR+QRRGGKGRS + RDEDFVT +F+ STH VLFFSS G VY Sbjct: 541 VTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+ +PQARGKAL+NIL L +GERIT+IM P DE +W+ L ++F+T G VRR Sbjct: 601 KLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALP-DEETWSRLQIMFSTTGGTVRR 659 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 N+LSDF +NR+GKIAMKL+ + I V+ CT+++D+LLT+ GQC+RFP+ +RVF GR Sbjct: 660 NELSDFTNVNRNGKIAMKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-- 777 +S+GVRGI L +GD++ISMAI+ H DA +ER Y+K +A RR +G + Sbjct: 720 DSMGVRGIQLEEGDRLISMAIIRHVDATAEERAAYIKLANAVRRSQAGLENGAEEPETVA 779 Query: 778 ------DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + +I + R E+ EQFILT+SE GFGKRTSS+++R + R GKGI A Sbjct: 780 DADAEEAVAAPADIDQARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMA 839 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 V++ N G L+A FPV + DQI+LV+D G LIR PVN IRI R ++GV++F+TA+DE+V Sbjct: 840 VNERN--GPLIASFPVEEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKV 897 Query: 892 VSVERIR 898 VSVER+ Sbjct: 898 VSVERVS 904 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 16/248 (6%) Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ + D DE L E+ ++ + G R P+S R R G Sbjct: 513 FGTPRKTEITDAEGDFEDEDLIAR----EDMVVTVSHAGYIKRVPLSTYRS-QRRGGKGR 567 Query: 725 RGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + D V + + HA + + + R +S +L N + Sbjct: 568 SAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTE 627 Query: 784 NISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 L +E + I+ + G +R DF NR+GK A + + Sbjct: 628 GERITSIMALPDEETWSRLQIMFSTTGGTVRRNELSDFTNVNRNGK--IAMKLEEGE--- 682 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIR 898 A+ V + D ++L S KG IR PV E+R+ R + GV + +R++S+ IR Sbjct: 683 AIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRLISMAIIR 742 Query: 899 ESEIVDEA 906 + E Sbjct: 743 HVDATAEE 750 >gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] Length = 908 Score = 966 bits (2498), Expect = 0.0, Method: Composition-based stats. Identities = 547/896 (61%), Positives = 673/896 (75%), Gaps = 5/896 (0%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + + I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ + Sbjct: 6 DDTGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFE 65 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G +KYVK ARI G+V+G+YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDG Sbjct: 66 SGHLPERKYVKSARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDG 125 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE RL + A LL D+ K+TVDF+ NYD S +EP VL AR+PN+LVNG GGI Sbjct: 126 DPPAAMRYTESRLARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGI 185 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGE+VD CVA+ID+P + ++AL EI+ GPDFPTG +ILGR G + AY Sbjct: 186 AVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYT 245 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGSI++R SH+E+ +RE ++ TEIPYQVNKA ++EKIAELV++KRI I+DLRDE Sbjct: 246 TGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDE 305 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+E+KR A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +L AF Sbjct: 306 SDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFN 365 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR LM R W Sbjct: 366 DFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDW 425 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 A DI LI L+DD + + DGT LSE Q RAIL+LRL RLT LGRD+I +EL L Sbjct: 426 PAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLAD 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI + LDIL SR+R+ I+K EL V++ TPR+T I++ +EDED I REDMVVTV Sbjct: 486 EIADYLDILRSRARIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTV 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKRVPLS YR+Q+RGGKGRSG+ RDEDFVT LF+ +THT VLFFS G YKEK Sbjct: 546 SHAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 VWRLP+ +P ARGKAL+NIL L ERITTIMP PEDE+SW L V+FAT GNVRRNK Sbjct: 606 VWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNK 665 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+Q+NR+GKIAMKLD D I+ VE C + ++LLTT LGQC+RFP+ +RVF GR+S Sbjct: 666 LSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDS 725 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI+L K D+VISMAI+ DA +ER Y+K A + E + + + + Sbjct: 726 TGVRGINLGKDDKVISMAILNAFDASPEERAGYLKMRRAV--IGDSGEEGTENGEAEEAS 783 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 IS ER ++ EQF+LT+SE+GFGKR+SSY++R S R GKGI A V+ N G L Sbjct: 784 AAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNL 841 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA FPV +DQI+LV++ G LIRVPV++IRI RA++GV +F+T K ERVVSVE I Sbjct: 842 VASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 897 >gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48] gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48] Length = 918 Score = 966 bits (2497), Expect = 0.0, Method: Composition-based stats. Identities = 513/914 (56%), Positives = 674/914 (73%), Gaps = 8/914 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +S GI+ V+I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M Sbjct: 1 MTD-TPASGLPTPHGISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +KKYVK A I G+VMG+YHPHG+ AIYDAL RMAQ +S+RLLL++GQGNFGSV Sbjct: 60 YEEGRTHDKKYVKSANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ +AA L+ D+ K+TVDF NYDG+ QEP VL +R PN+LVNG G Sbjct: 120 DGDPPAAMRYTESRMTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE+++ C+A++D+P++ + L+ I+ GPDFPTG ILGR+G + A Sbjct: 180 GIAVGMATNIPPHNLGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEILGRSGARQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRGS+++RG + +E DRE I+VTE+PYQVNKA ++E IAE+VREKRI I+D+R Sbjct: 240 LLTGRGSVIMRGKASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQG R+VIELKR AS DVILNQLYRY++LQ+ F VNM+ALN +P++ L +L+ Sbjct: 300 DESDRQGMRMVIELKRDASGDVILNQLYRYSALQTSFGVNMLALNHGRPQQMGLRKLLEI 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEVVVRRT++ LNKARDR HVLVGLAIAVAN+DE++ IIR S +P AR L + Sbjct: 360 FLDFREEVVVRRTRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAK 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W A D+ LI+LI D + G + L+E Q RAIL L L+RLTGLGRD+I E +L Sbjct: 420 NWPAGDMSPLIELIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTL 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L ILSSR R+LGI+++EL VK PRR+ IV+G D+EDED I REDMVV Sbjct: 480 AASIAEYLAILSSRERILGIVREELEEVKALYAEPRRSLIVDGEADIEDEDLIPREDMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GYVKR PLS YR Q RGGKGRSG+ M+DED +T ++ STH +LFFSS G YK Sbjct: 540 TVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYK 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP+G+PQ++GKA +N+L L++ E +T I+ PEDE++W+ L +VFAT+ G+VRRN Sbjct: 600 LKVWRLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+ +NR+GKIAMKL+ D I+ V CT++ D+LL+T G+ +RF + +RVF GR+ Sbjct: 660 KLSDFVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEVRVFKGRD 719 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLK 776 S GVRG+ L + D VISMAI+ +A ER Y+KH ++ R ++G T + Sbjct: 720 STGVRGVRLGEDDTVISMAILRRVEATPAERAAYLKHAASLRAAVTGEGEEATVVVEEEA 779 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + + + ++S ER EL E+FILT+++ GFGKRTSSYD+R + R G+GI A D+SK Sbjct: 780 EEGAEDASLSVERIAELGAAEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKR- 838 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV D DQ++LV+D G LIR PV++IR+A R T+GV IF T+ E+VVSVER Sbjct: 839 -GGKLVASFPVEDTDQLLLVTDGGQLIRTPVSQIRVAGRNTQGVTIFRTS-GEKVVSVER 896 Query: 897 IRESEIVDEAESTE 910 + E+ D + E Sbjct: 897 LAETAEEDGPDEAE 910 >gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 884 Score = 965 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 554/886 (62%), Positives = 673/886 (75%), Gaps = 2/886 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +KKYVK AR+ G+V+GK Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL KAA LL Sbjct: 61 YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD + EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D CVA Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY GRGSIV+RG IE +RE Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKERE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +++TEIPYQVNKA M+E+IAELV+EK+I I DLRDESDR GYRVVIELKR A ADV+L Sbjct: 241 ALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F VNMVAL+ +P L +L FV FRE VV RRTK+LL KARDRA Sbjct: 301 NQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D++D++ LIDD + I D Sbjct: 361 HILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISPD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT+ LS Q RAIL+LRL RLT LGRD+IR+EL+ L EI + LDIL SR R+LGIIK E Sbjct: 421 GTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L VK E TPRRT I+E ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK Sbjct: 481 LAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GR+G+ RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARGKALINIL L Sbjct: 541 GRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QGERITTIMP PEDES+W NL V+FAT GNVRRNKLSDF+ + RSG IAMKLD + I Sbjct: 601 EQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAI 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + V+ CT+ +D+LLT GQC+RFP++ +RVF GR S+GVRGI+L +GD+VIS+AI+ H Sbjct: 661 VDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHV 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + DER Y+K A + + + ++S +++ER E+ EQ +LTVS Sbjct: 721 ETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVS 780 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+GKRTSSY++R + R GKGI A V+ N G LVA FPV D DQI+LV+DKG LIR Sbjct: 781 VNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIMLVTDKGQLIR 838 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 PV IRIA R+T+GV++F TA+DE VVSVE I E + E Sbjct: 839 CPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITEEAESGNGANGE 884 >gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100] Length = 941 Score = 963 bits (2490), Expect = 0.0, Method: Composition-based stats. Identities = 521/941 (55%), Positives = 673/941 (71%), Gaps = 34/941 (3%) Query: 1 MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M + + + I + ITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MADPSDGNKGDRGAGDIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G WNK Y K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+R+ LI+GQGNFGS Sbjct: 61 MSENGYSWNKPYRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGDPPAA RYTE RLQK + LL+DL DTVDF+ NYD S +EP VL AR+PN+LVNG Sbjct: 121 VDGDPPAAMRYTEVRLQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A ++NP + ++ LME I GPDFPTG VI+GR GI+ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIMGRAGIRA 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGS+V+RG H+E DR+ ++VTEIPYQVNKA + E+IAELVREKR+ I+D+ Sbjct: 241 AYLKGRGSVVVRGKVHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDV 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR GYRVVIELKR A DV+LNQLYR+TSLQS+F+ NMVALN +PE+ TL+ ++ Sbjct: 301 RDESDRSGYRVVIELKRDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLDFIQ 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF FRE V+ RRTK+LL KARDRAHVLVGLA AVAN+DEV+++IR +P+P +AR LM Sbjct: 361 AFTQFRETVITRRTKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMS 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A DI L+ LI+D I LS Q +AILELRL RLT LGRD+I +EL + Sbjct: 421 RDWPADDIAPLLLLIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKA 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ L+ILSSR+R++ I++ EL ++K+E TPRRT I++ +++DED I +EDMV Sbjct: 481 LADKIRDYLNILSSRARVISIVRDELTAIKEEFATPRRTEILDVEGEVDDEDLIQKEDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KRVPLS YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLF SS G Y Sbjct: 541 VTVSHRGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+ +PQARGKALIN+L L Q E IT+I+P PE+ + ++++FAT+ GNVRR Sbjct: 601 KMKVWRLPLSAPQARGKALINLLPLQQDETITSILPLPEER-DESGVFILFATRSGNVRR 659 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 N+L+DF ++ ++GKIAMKLD D+I + C + +DILLTT GQ +RFP++ +R+F GR Sbjct: 660 NELADFAEVRQNGKIAMKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPVTDVRIFKGR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---- 775 S GVRG+ L + D VIS+AI+ H +A ER Y+K +A RR +G+ Sbjct: 720 ESTGVRGVRLDEDDTVISLAILRHMNATPAERAAYLKQANAMRRAAAGERAATEGDIVEQ 779 Query: 776 ----------------KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 +S+ +++ R E+ EQ++LT+SE+GFGKRTSSY++R Sbjct: 780 EAAAAAEAVEALDDGEAIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRT 839 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 S R GKGI A V++ N G L+A FPV D DQI+LV++ G LIR P+ I I R+ +G Sbjct: 840 SGRGGKGIIAMAVNERN--GRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQG 897 Query: 880 VVIFSTAKDERVVSVERIR----------ESEIVDEAESTE 910 V IF T +DERVVS E I + +AE E Sbjct: 898 VTIFRTDQDERVVSAELISDDGTGNGNGDGPDAGGDAEGEE 938 Score = 57.9 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTK 701 YV+ ++ G +R ++ R G IAM ++ +++ + I+L T Sbjct: 817 EQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIASFPVEDTDQIMLVTN 876 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G+ +R PI I GR++ GV + ++V+S ++ A+ Sbjct: 877 GGKLIRCPIEGI-SITGRSAQGVTIFRTDQDERVVSAELISDDGTGNGNGDGPDAGGDAE 935 Query: 762 RRLIS 766 + Sbjct: 936 GEEPT 940 >gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] Length = 932 Score = 963 bits (2489), Expect = 0.0, Method: Composition-based stats. Identities = 520/916 (56%), Positives = 669/916 (73%), Gaps = 8/916 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + ++ G+ ++I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++ YVK AR+ G+VMGKYHPHG+ AIYD + RMAQ +S+ LLLI+GQGNFGSV Sbjct: 61 NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE R+ +AA +L DL KDTVDF+ NYDGS QEPVVL +R PN+LVNG G Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVD C+A IDNP+I LD L++I+ GPDFPTG I+GR+G + A Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEIIGRSGARQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRGS+++RG + IE+ +RE IV+T IPYQVNKAA++E+IAELVREKRI +ADLR Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+E+KR ASA+VILNQLYRYT LQS F VNM+ALN +PE+ L ++ A Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGRPEQMGLREMVTA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEVVVRRTK+ L+KARDR HVLVGLAIAVAN+DE + IIR S +P AR L+ + Sbjct: 361 FVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ L++LI D + + L++ Q RAIL L L+RLTGLGRD+I E L Sbjct: 421 DWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAREL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ L+IL+SR R++ I+++EL+ V+++ PRRT IVEG D+EDED I RE+MV+ Sbjct: 481 AGVIRGHLEILASRERVMAIVREELVQVREQFAVPRRTEIVEGDADVEDEDLIAREEMVI 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GYVKR PL+ YR Q RGGKGRSG+ ++ED VT +F +THT +LFFSS G YK Sbjct: 541 TVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP+G+P +RGKA +N+L + GE IT+I+P PEDE++W+ V+FAT+ GNVRRN Sbjct: 601 LKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+ I R+GKIAMKLD D I+ V C +ND+LLTT LG+C+RF +RVFAGR Sbjct: 661 KLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----RLISGDTEEITS 774 +S GVRGI LA+GD VISMAI+ A A ER Y+KH A R +T Sbjct: 721 DSTGVRGIRLAEGDSVISMAILRSAPATPAERAAYLKHAKAMRIATGEAEEGEETAAPEE 780 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + E + ER E+ E+ ILTVS +G+GKRTS+Y+FR + R G+G+ A D++K Sbjct: 781 EDEANGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTK 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G L FPV++ D+I+LVSD+G LIR+PV ++R+A R T+GV+IF + DE VVSV Sbjct: 841 R--GGKLAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSV 898 Query: 895 ERIRESEIVDEAESTE 910 ER+ E DE E + Sbjct: 899 ERLAEPAGDDEVEDGD 914 Score = 53.6 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQ 704 ++ + G +R +F + R G+ + ++ + ++ILL + GQ Sbjct: 806 ILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGSFPVDEGDEILLVSDQGQ 865 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R P+ +R AGRN+ GV + + V+S+ + D + + Sbjct: 866 LIRIPVRQVR-LAGRNTQGVIIFRKSADEHVVSVERLAEPAGDDEVEDGDIGGEDGTDAG 924 Query: 765 ISGDTE 770 + Sbjct: 925 TDNGGD 930 >gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] Length = 924 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 506/917 (55%), Positives = 660/917 (71%), Gaps = 12/917 (1%) Query: 2 TEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 TE+I + E+GI +SIT+EMQ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ Sbjct: 9 TENIPPQGAGSGDGEEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILW 68 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +K++ K A + G+V+GKYHPHG+ A+YDAL RMAQ +S+RL L++GQGNFG Sbjct: 69 SMQEQGYTHDKRHRKSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFG 128 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+D DPPAA RYTE R+ A LL D+ KDTVDF YDG QEP VL AR+PN+LVNG Sbjct: 129 SIDNDPPAAMRYTEVRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNG 188 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGE++D V +ID P + + L+ I+ GPDFPTGA I+G++G + Sbjct: 189 AGGIAVGMATNIPPHNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIMGQSGAR 248 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 A TGRGS+V+R + +E+ DR I+V++IP+QVNKAAM+E+IA LVREK++ IAD Sbjct: 249 QALLTGRGSVVMRATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIAD 308 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G RVVIELKR A+A+V+LN LY+ + LQ+ F+ N++ALN +PE+ TL +L Sbjct: 309 LRDESDRHGIRVVIELKRDANAEVVLNNLYKQSPLQTSFAYNLLALNRGRPEQMTLRTVL 368 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 K+FV FREEVV RRTK+LL KARDRAHVLVGLAI+VAN+DEVVR+IR +PNP AR LM Sbjct: 369 KSFVDFREEVVTRRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALM 428 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R+W A D+ L+ L+ D +++ DG++ LSE Q RAIL+LRL RLT LGRD+I +EL Sbjct: 429 GRNWPAKDLASLVALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQ 488 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 SL +I + L IL R R+L IIK EL V++ TPR+T+ ++ + + ED I REDM Sbjct: 489 SLADKIADYLQILRDRDRVLTIIKDELADVRERFATPRKTQFIDAIEMED-EDLIAREDM 547 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GYVKR L YRAQRRGGKGRSG+ M+D+DF++ LF+ +THT +LFF+ G Sbjct: 548 VVTVSHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMA 607 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YK K+WRLP G P +RGKA IN+L L+QGER+T I+P P+DE+ W ++ +VFAT+ GNVR Sbjct: 608 YKLKLWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVR 667 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF +N++GKIAMKLD D ++ V + DILLTT+ G +RFP+ A+RVF+G Sbjct: 668 RNKLSDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSG 727 Query: 719 RNSVGVRGISLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R S GVRGI D+ V+SMAI+ H D +E Y+KH +A RR +G+ E Sbjct: 728 RTSTGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRA-AGEGETEG 786 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 S E +S ER ++ EQFILT +E G+GKRTSS+++R S R G+GI S Sbjct: 787 SDAEAEGSEAALSTERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTS 846 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 N G +VA FPV D D+I+LV+D G LIR V +IR+A R T+GV I +T + ERVVS Sbjct: 847 ARN--GRVVASFPVEDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVS 904 Query: 894 VERIRESEIVDEAESTE 910 VE + E++ D+ E Sbjct: 905 VEHVPEAQNDDDLPDDE 921 >gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] Length = 950 Score = 961 bits (2485), Expect = 0.0, Method: Composition-based stats. Identities = 566/893 (63%), Positives = 702/893 (78%), Gaps = 6/893 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ + Y K A + Sbjct: 27 VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEVMGKYHPHG++AIYDAL RMAQDWSLR LIEGQGN+GS+DGDPPAA RYTECRL+K Sbjct: 87 GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL D+ K+TVDF+ NYDG QEPVVL A +PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGCVA+IDNP I L +MEII GPDFPTGA++LG+ GI++AY+TGRGS+++RG H E Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILLGKAGIQSAYSTGRGSLLMRGKVHTET 266 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 GDRE I+VTE+PYQVNKA M+EK+AELVR+KRI I+D+RDESDR+GYRVV+ELKR A Sbjct: 267 IRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRDA 326 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 SADVILNQLYR+T LQ+ F NMVALNG KPE+ TL+ +L AFVAFRE+VV RRTKYLL Sbjct: 327 SADVILNQLYRFTPLQTSFGANMVALNGGKPEQLTLMDMLSAFVAFREDVVNRRTKYLLR 386 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R W+A D+ L+ LIDD Sbjct: 387 KARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDDPR 446 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + I GT LSE Q RAIL+LRL RLT LGRD+I +EL +G EIK+ L+ILSSR+R++ Sbjct: 447 HRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTRVM 506 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK EL +++DE TPRRT + EG D+EDED I REDMVVTVSH GY+KRVPLSVYR+ Sbjct: 507 QIIKDELTAIRDEFATPRRTELSEGAADLEDEDLIPREDMVVTVSHGGYIKRVPLSVYRS 566 Query: 559 QRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKGRSG+ ++++ D VT LF+ +THT VLFFSS G VYKEKVWRLP+ +PQ RGKA Sbjct: 567 QRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLTTPQGRGKA 626 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L+N+L L + ERIT+I+P P +E + V+FAT G VRRNKLSDF +NR+GKIAMK Sbjct: 627 LVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMK 686 Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D IL V TC++++D+LLT GQC+RFP + +RVFAGRNSVGVRGISL K + V+ Sbjct: 687 LDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVV 746 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SMAI+ H DA +ER Y+K RR + GDT + ++ + I +ER EL + Sbjct: 747 SMAILRHVDASAEERATYLK----MRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAR 802 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ILTVSE G+GKR+SSY+FR S R GKGIRATD ++++++GALVA FPV + DQ++LV Sbjct: 803 EEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLV 862 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +D+G +IRVPV+ I + RAT GV IF TA ERVVSVERI + + E+ Sbjct: 863 TDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSVERIPDQGTDETGEAD 915 Score = 53.6 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 48/305 (15%) Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 +E+ V+ + G V+R LS + R GK + + + S Sbjct: 647 NEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMKLDDEQDSI-LGVATCSEDDD 705 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 VL +S G + + + + + L ++ I+ + + Y+ Sbjct: 706 VLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVVSMAILRHVDASAEERATYL 765 Query: 649 VF-----------------------------------------ATKHGNVRRNKLSDFIQ 667 +++G +R+ +F Sbjct: 766 KMRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAREEMILTVSEYGYGKRSSSYEFRT 825 Query: 668 INR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 R +LD +++ E+ +LL T GQ +R P+ I GR + Sbjct: 826 SGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGI-GMKGRATG 884 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV A G++V+S+ + D S GD +++ E Sbjct: 885 GVTIFRTADGERVVSVERIPDQGTDETGEADADVTDSVAPDGGDGDGGSDGPMRDAEGDE 944 Query: 783 GNISE 787 G+I E Sbjct: 945 GSIDE 949 >gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12] gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12] Length = 913 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 492/913 (53%), Positives = 637/913 (69%), Gaps = 12/913 (1%) Query: 1 MTEHIISSDEEEE-----KGITS-VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 MT+ + +E I +SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHR Sbjct: 1 MTDTPEPPENTDETPPGGGRIQETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M + G K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQ Sbjct: 61 RILYAMHETGNTHEKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQ 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD PAA RYTE R+ K A LL D+ K+TVDF+ NYDG +EP VL AR+PN+ Sbjct: 121 GNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNM 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 LVNG GGIAVGMATNIP HNLGEV+D +A+I+ PD++++ LM+ I PDFPTG ILGR Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 G + AY GRGS++IR + IE+ DR IV+ EIPYQVNK++M+EKIAELVREKRI Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIE 300 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 IA ++DESDR G RVVIELKR A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL Sbjct: 301 GIAHVQDESDRVGVRVVIELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTL 360 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 L +F++FREEVV RRT Y L KAR+R+HVL GLA+AV+N+DEVV IR S + AR Sbjct: 361 KDFLSSFISFREEVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAR 420 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 +LM R W A+DI D I LIDD ++T+ DGT LSE Q RAIL+LRL RLT +G ++ Sbjct: 421 EKLMTRRWPAADIADYIRLIDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVT 480 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 +EL L +I+E LDIL SRSR++ II EL VKD+ PRRT I + DMEDED I Sbjct: 481 DELQELAAKIQEYLDILRSRSRIMAIISDELREVKDQFAVPRRTEITDWSGDMEDEDLIE 540 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 REDMVVTV+ GY+KR PL +RAQRRGGKG +G+ +++D VT LF+ +THT +L F++ Sbjct: 541 REDMVVTVTSGGYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTT 600 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VYK K WRLP G ARGKAL+N+L ++ G I IMP E W +L +VFAT Sbjct: 601 DGMVYKLKTWRLPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSA 660 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G+VRRN LSDF + R+GKIAMKL ++ C++E+D++L T LG+ +RF + +R Sbjct: 661 GDVRRNALSDFTNVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 VF GR+S GVRG+ LA+GD+V+SMA++ H AD ER Y+K RR ++G +EE S Sbjct: 721 VFKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADPQERAAYLK----MRRAVAGLSEEAES 776 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 D+ G +S ER E+ E ILT++E G GK +SS+D+ + R G+G+ A D K Sbjct: 777 EDEDTVEAGQLSPERYAEMSAAEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMD--K 834 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LVA FPV +DQI+L + G IR PV+ I SRA GV +F+TA E+VVSV Sbjct: 835 AMRGGPLVACFPVEIDDQIMLATSTGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSV 894 Query: 895 ERIRESEIVDEAE 907 I + D + Sbjct: 895 AYIADRGEADGDD 907 Score = 50.2 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 13/223 (5%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED V+ V+ LG R + R G+ +GV + ++ + Sbjct: 697 SEEDDVMLVTALGRAIRFRTTDVRV--FKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADP 754 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 Y G + + P E S ++ T+ Sbjct: 755 QERAAY-------LKMRRAVAGLSEEAESEDEDTVEAGQLSPERYAEMSAAEDLILTITE 807 Query: 654 HGNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G + + D+ + + K +++ ++ I+L T GQ +R P+ Sbjct: 808 GGTGKISSSHDYPVRGRGGQGVTAMDKAMRGGPLVACFPVEIDDQIMLATSTGQSIRCPV 867 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 I F R + GV+ + A G+QV+S+A + + Sbjct: 868 DGI-SFRSRAAGGVKVFNTAPGEQVVSVAYIADRGEADGDDPA 909 >gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 909 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 477/911 (52%), Positives = 629/911 (69%), Gaps = 13/911 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + +E +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MSDTPEIPENMDETPPERPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A LL D+ K+TVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVVD +A+I++PD+ + L+E I GPDFPTG V+LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + +E+ DR IVV EIPYQVNKA+M+EKIAE VREKRI Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 ++ ++DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ T Sbjct: 301 EGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT Y L KAR+R+HVL GLA+AV+N+DEVV IR S + A Sbjct: 361 LRRFLTSFIDFREDVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A++I+ + LIDD + DGT LSE Q RAIL+LRL RLT +G ++ Sbjct: 421 REKLMTRRWPAAEIESYLRLIDDPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE LDILSSR R++GII EL VK+ PRRT+IV+ DMEDED I Sbjct: 481 TDELEDLAAKIKEYLDILSSRERIMGIIADELREVKENFAVPRRTQIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ED VT LF+ +THT +LFF+ Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP +GKA++NIL + G I IMP + W NL +VFAT Sbjct: 601 TDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G+VRRN LSDF + R+GKIAM L E+++ C++++D++L T G+ +RFP + + Sbjct: 661 AGDVRRNALSDFTNVKRNGKIAMDLPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDV 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 RVF GR S GVRGI L GD+V+SM+++ H+ ++R Y+K RR ++G T++ Sbjct: 721 RVFKGRKSTGVRGIRLNDGDRVVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAE 776 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++ + N S E E+ E ILT++ G GK +SS+D+ + R G G+ A D Sbjct: 777 PSDEEAVADPNFSTELYAEMSAVENLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMD-- 834 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K G LVA FPV +DQI+L + KG IRVPV+ I SR+ GV +F+T K E VVS Sbjct: 835 KAMRGGPLVASFPVEMDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVS 894 Query: 894 VERIRESEIVD 904 V RI + + Sbjct: 895 VARIADQGDDE 905 >gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1] Length = 894 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 503/891 (56%), Positives = 672/891 (75%), Gaps = 29/891 (3%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + +T V+I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++N Sbjct: 5 PSPSQFDVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYN 64 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + K ARI G+VMGKYHPHG++AIYDA+ RMAQ +S+RL LI+GQGNFGS+DGD AA Sbjct: 65 KPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAM 124 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ ++AHFL++D+ KDTVDF PNYD S EP+VL ARYPN+LVNG GGIAVGMAT Sbjct: 125 RYTEARMARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMAT 184 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+D C A+IDNPDI + +ME++ GPDFPTG ILGR+GI+ A TGRGS+ Sbjct: 185 NIPPHNLGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSV 244 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG HIE+ DRE I+VTE+PYQVNKA M+E+IAELVR+K+I ++DLRDESDR G Sbjct: 245 VMRGRCHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGV 304 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIE+KR A ADV+L QLY++T LQ+ F VN +ALNG +P+ TL I+ AF+ FREEV Sbjct: 305 RVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEV 364 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KARDRAHVLVGL+IAVAN+D+++++IR + +P AR +LM R W A D++ Sbjct: 365 ITRRTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVE 424 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LI LID+ I DGT LSEVQ +AIL+LRL RLTGL RD I +EL +G +IKE L Sbjct: 425 PLIRLIDEPGRGI-VDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFL 483 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +ILSSR +LL +++ EL+ ++++ TPRRT I + + + ED I REDMVVTV++ GY+ Sbjct: 484 EILSSRPKLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVTNTGYI 543 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVPLS YRAQ+RGGKGRSG+ M+DEDF++ +F+ STHT VLFFSS G YK KV+RLP+ Sbjct: 544 KRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPL 603 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G+PQARGKA++NIL L +GE I+T+MP PEDE++W +L+V FAT G+VRRN LSDF+ I Sbjct: 604 GTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDI 663 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +GKIAMKL+ +++++V+ C+ +DILL T+LG+ +RF + +RVF GR+S GVRGI Sbjct: 664 RANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIR 723 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L DQVISM+++ H + D + R Y+++ +++ Sbjct: 724 LDDADQVISMSVLRHVEFDMETRDAYLRN--------------------------DLTGP 757 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + EQ ILTV+E G+GKRTS+Y++RI+ R G+GI D+++ N G +VA FPV Sbjct: 758 EAERMSESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKN--GPVVASFPVG 815 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +D+I+LVSD GTLIR+PV++IRIA R T+GV++ TA++ERVVS R+ + Sbjct: 816 HDDEIMLVSDGGTLIRMPVDDIRIAGRKTQGVIVLRTAENERVVSTARLCD 866 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 25/255 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G V+R LS + R GK + + D + + + S +L + LG Sbjct: 643 VAFATSKGDVRRNLLSDFVDIRANGKI--AMKLNDGEQLIAVQPCSDSDDILLATRLGKA 700 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---------- 648 + +V + + + L +++ E + + Y+ Sbjct: 701 IRFQVGDVRVFKGRDSTGVRGIRLDDADQVISMSVLRHVEFDMETRDAYLRNDLTGPEAE 760 Query: 649 ---------VFATKHGNVRRNKLSDFI-QINRSGKIA-MKLDSRDEILSVETCTQ-ENDI 696 + T++G +R ++ IA + L ++ + +++I Sbjct: 761 RMSESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKNGPVVASFPVGHDDEI 820 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L + G +R P+ IR AGR + GV + A+ ++V+S A + + +E Sbjct: 821 MLVSDGGTLIRMPVDDIR-IAGRKTQGVIVLRTAENERVVSTARLCDLNGSNEESEEEFD 879 Query: 757 HMSAQRRLISGDTEE 771 G +E Sbjct: 880 EGDDTAATPPGGDDE 894 >gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] Length = 905 Score = 958 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 471/912 (51%), Positives = 636/912 (69%), Gaps = 20/912 (2%) Query: 1 MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ I + ++ + +SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI Sbjct: 1 MTDEIKTPTDDTPEIPSYDGPQISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRI 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M + G NK Y K A+ G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGN Sbjct: 61 LYAMHENGYTHNKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS+DGD AA RYTE RL K + +LL D+ K+TV+F+ NYDG EP VL ARYPN+LV Sbjct: 121 FGSMDGDNAAAMRYTEARLDKPSEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLV 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GGIAVGMATNIP HNLGEV+D +A+IDNP++ LME + PDFPTGAVILGR+G Sbjct: 181 NGAGGIAVGMATNIPPHNLGEVIDATLALIDNPELTSSDLMEYVPAPDFPTGAVILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 AY GRGS++IR + +E+ R I++ EIPYQVNKA+M+EKIAEL R+K+I I Sbjct: 241 AVKAYNEGRGSVIIRAKTRVEEIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGI 300 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 + ++DESDR G RVV+ELKR A+A+V+LNQL+R+T LQ+ F NM+ALNG KPE+ TL Sbjct: 301 SHVQDESDRVGVRVVVELKRDATAEVVLNQLFRFTPLQTSFGCNMLALNGGKPEQLTLYK 360 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 L F++FREEVV RRT + LNKAR+R+H+L GLA+AV+N+DE+V IR S +P AR + Sbjct: 361 FLSYFISFREEVVARRTAFELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREK 420 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM R W A+DI I LIDD S+T+ D + LSE Q RAILELRL RLT +G ++ +E Sbjct: 421 LMTRRWPAADISQYISLIDDPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDE 480 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L L +I+ L+IL SR R++ II EL V ++ PRRT I+E DM+DED I +E Sbjct: 481 LEELAGKIQNYLEILRSRDRIMSIISDELKEVHEKFAVPRRTEIIEWAGDMDDEDLIEKE 540 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMVVT+++ GY+KR L+ +R Q+RGGKG G+ +DEDFVT++F+ +THT++LFF++ G Sbjct: 541 DMVVTITNSGYIKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDG 600 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VYK K WRLP+G A+GKA++NIL ++ G I +MP + W NL +VFAT G Sbjct: 601 MVYKLKTWRLPLGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAGG 660 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 VRRN LSDF + +GKIAMKL I++V T+ +D LLTT LG+ +RFP + +RVF Sbjct: 661 VRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRVF 720 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR+S GVRGI LA GD+V+SMA++ H +A DER Y K A L Sbjct: 721 KGRDSTGVRGIKLAPGDKVVSMAVIRHVNASSDERTAYFKMRRA--------------LS 766 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 D + +IS+ER EL E +IL ++ GFGKR+S++++R+S R G+G+ A ++ + + Sbjct: 767 EDETPNNDISQERYNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRD 826 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + +VA F V++ DQI+L + G IR PV+ I + R++ GV +F+T E+VVSV Sbjct: 827 DT--VVAAFTVHEEDQIMLATSTGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAY 884 Query: 897 IRESEIVDEAES 908 I ++E D ++ Sbjct: 885 IADTEDSDVSDD 896 >gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 929 Score = 956 bits (2471), Expect = 0.0, Method: Composition-based stats. Identities = 545/900 (60%), Positives = 673/900 (74%), Gaps = 4/900 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H + I VS++DEMQ+SYL YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MADHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + ++ YVK ARI G+VMGKYHPHG+ AIYDAL RMAQ +S+RL LI+GQGNFGSV Sbjct: 61 HENNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL + A LL D+ DTVDF+PNYDG EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D +A+IDNP++ ++ L I+ GPDFPTG ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGS+++R IE+ RE ++VTEIPYQVNKA ++EKIAELVREKRI I+DLR Sbjct: 241 YATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQG R+VIE+KR A D++LNQL+RYT+LQS F NM+ALNG +PE TL L A Sbjct: 301 DESDRQGMRIVIEIKRDAVPDIVLNQLWRYTALQSSFPCNMIALNGGRPETLTLRDFLTA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S + AR L R Sbjct: 361 FIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCAR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LI D +T+ +GT+ LSE Q RAILELRL RLT LGRD+I LN L Sbjct: 421 DWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI + LDIL SR+RL GIIK E+++VK+ TPRRT I++ ++DED I REDMVV Sbjct: 481 AAEIADYLDILGSRARLFGIIKDEMIAVKEAHATPRRTIILDSDAGVDDEDLIQREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPLS YRAQRRGGKGRSG+ RD+DFV LF+ STH VLFFSS G VYK Sbjct: 541 TVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFFSSRGQVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+ +PQA GKAL+NIL L Q ERITTIMP PEDE W +L V+FAT G VRRN Sbjct: 601 EKVWRLPLSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF Q+NR+GKIAM+LD ++I+ V+ CT+++D+LLTT GQC+RF ++ +RVF GR+ Sbjct: 661 KLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRD 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S+GVRGI+L +GD+VIS+AI+ H +AD DER Y+K A + + N Sbjct: 721 SMGVRGIALGEGDRVISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEE 780 Query: 781 VEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 G ++S ER E+ EQ ILT+S G+GKRTSS+++RI+ R GKGI A V+ N Sbjct: 781 ALGSTSLSLERYAEMSAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARN-- 838 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA PV + D I+LV++ G LIR PV IR+A R T+GV++F+TA+DE+VVSVERI Sbjct: 839 GKLVASMPVEEGDGIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAEDEQVVSVERIP 898 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 648 VVFATKHGNVRRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 ++ + +G +R ++ +A+ + ++++ + + I+L T G Sbjct: 802 ILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNG-KLVASMPVEEGDGIMLVTNGG 860 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 Q +R P+ IRV AGR + GV + A+ +QV+S+ + +A+ E + Sbjct: 861 QLIRCPVEGIRV-AGRGTQGVIVFNTAEDEQVVSVERIPEDEAERGEEEGPGEQGPLGDS 919 Query: 764 LISGDTEEIT 773 S + + Sbjct: 920 GPSDNGDTPE 929 >gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Magnetospirillum magnetotacticum MS-1] Length = 898 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 508/897 (56%), Positives = 669/897 (74%), Gaps = 32/897 (3%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + + + IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + Sbjct: 2 TTLPASPQFD--ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEA 59 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G +NK + K ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGD Sbjct: 60 GYHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGD 119 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL K+AH LL+D+ K+TVDF+ NYD S EP+VL ARYPN+LVNG GGIA Sbjct: 120 PPAAMRYTEARLAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIA 179 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGEV+D C A ID+P++ ++ LME++ GPDFPTG ILGR GI+ A T Sbjct: 180 VGMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLT 239 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS+V+RG HIE+ DRE I+VTEIPYQVNKA MLE+IAELVR+K+I I+DLRDES Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIE+KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE TL I+ AF+A Sbjct: 300 DRDGVRVVIEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIA 359 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FREEV+ RRT + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P AR LM R+W Sbjct: 360 FREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWP 419 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D++ LI LID+ I DG LSE+Q +AIL+LRL RLTGL RD I +EL +G + Sbjct: 420 VGDVEPLIQLIDEPGRAI-EDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+ L ILSSR RL +++ EL+ ++++ TPRRT I E + + ED I REDMVVTV+ Sbjct: 479 IEAYLLILSSRPRLFEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVT 538 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GY+KRVPLS YRAQ+RGGKGRSG+ ++DEDF++ +F+V+THT VLFFSS G YK KV Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKV 598 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +RLP+G+PQARGKA++N+L L++GE I+TIMP PEDE+SW +L+V+F T G+VRRN LS Sbjct: 599 YRLPLGNPQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLS 658 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 DF ++ +GKIAMKL + ++SV+TC + +D+LL T LG+ +RFP+ +R F R+S Sbjct: 659 DFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDST 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L D+VISM+I+ H D D + R ++K Sbjct: 719 GVRGIRLDGEDEVISMSILRHTDYDSETRDAFLK-------------------------- 752 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G++ E+ +++ ++QF+LTV+E GFGKRTS++++RI+ R G GI D++ + G +V Sbjct: 753 GDLPAEQMEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGTVV 810 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 A FPVN D I+LVSD G LIR+PV++IRIA R T+GV + TA++ERVVS R+ + Sbjct: 811 ASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARLCD 867 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 28/260 (10%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ V+ G V+R PLS + R GK + E ++ + VL + LG Sbjct: 643 VMFVTSKGDVRRNPLSDFTEVRANGKIAMKLGE-GERLISVQTCAAETDDVLLATHLGKA 701 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------- 638 + V + ++R + + L+ + + ++ Sbjct: 702 IRFPVHDVRE--FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPAEQ 759 Query: 639 -DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQEN 694 ++ +V+ T++G +R ++ R G LD + +V E+ Sbjct: 760 MEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGTVVASFPVNHED 819 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 DI+L + G+ +R P+ IR AGR + GV + A+ ++V+S A + ++ DE Sbjct: 820 DIMLVSDGGKLIRMPVDDIR-IAGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEAEEA 878 Query: 755 MKHMSAQRRLISGDTEEITS 774 + + Sbjct: 879 DEADEGVLDAAEDMAGGEDA 898 >gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] Length = 908 Score = 955 bits (2468), Expect = 0.0, Method: Composition-based stats. Identities = 487/909 (53%), Positives = 629/909 (69%), Gaps = 12/909 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+ + +VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M Sbjct: 1 MEENTPERPQYGGP---TVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+ Sbjct: 58 HEGGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K A LL D+ KDTVDF+ NYDG EP VL AR+PN+LVNG G Sbjct: 118 DGDNAAAMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV D +A+I+NPD+ + L+E I GPDFPTG ++LGR+G + A Sbjct: 178 GIAVGMATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIMLGRSGARKA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS+VIR + IE+ DR IV+ EIPYQVNKAAM+EKIAE VREKRI IA ++ Sbjct: 238 YIEGRGSVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQ 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL G L A Sbjct: 298 DESDRHGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLHGFLSA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEVV RRT + L KARDR+HVL GLA+AV+N+DEVV IR S + AR +LM R Sbjct: 358 FITFREEVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI + I LIDD ++T DGT LSE Q RAIL+LRL RLT LG ++ +EL L Sbjct: 418 RWPAGDILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQEL 477 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE L IL+SR R++ II EL VK++ PRRT+IV+ DM+DED I REDMVV Sbjct: 478 AAKIKEYLAILASRERIMEIISTELREVKEQFSVPRRTQIVDWSGDMDDEDLIEREDMVV 537 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR L+ +RAQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK Sbjct: 538 TVTQGGYIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYK 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K WRLP+G ++GKA++NIL + QG I IMP E W++L V+FAT G+VRRN Sbjct: 598 LKTWRLPLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LSDF + R+GKIAM L E+++ C + +DI+L T G+ +RFP + +RVF GR Sbjct: 658 ALSDFTNVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRK 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GVRGI L D+V+SM+++ H DA DER Y+K A + + Sbjct: 718 STGVRGIRLQGDDRVVSMSVIRHFDASADERAAYLKMRRALAGAP-------DDGEEPEA 770 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G+I+ +R +E++ E ILT+S +G GK +SS+D+ + R G G++A D K G Sbjct: 771 AAGDITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGD 828 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LVA FPV +DQI+L + +G IRVPV+ I SR+ GV +F T K E VVSV I E Sbjct: 829 LVASFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVVSVAWIAEK 888 Query: 901 EIVDEAEST 909 D+ ++ Sbjct: 889 GDQDDDAAS 897 >gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003] gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003] Length = 913 Score = 955 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 471/916 (51%), Positives = 633/916 (69%), Gaps = 11/916 (1%) Query: 1 MTEHIISSDE--EEEKGITS----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 MT+ I +D + K VSI +EM+ +YL YA++VI+ RAIPDLRDGLKP HR Sbjct: 1 MTDIIDPTDPSGDTPKRAHHAGPVVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M + G +K Y K AR G+VMGKYHPHG+AAIYDAL RMAQD+S+ L L++GQ Sbjct: 61 RILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQ 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD AA RYTE R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+ Sbjct: 121 GNFGSMDGDSAAAMRYTEVRMDKPAAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNM 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 LVNG GGIAVGMATNIP HNLGEV+D +A+I+NPD+ +ALM+ + GPDFPTGA I+GR Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIENPDLSSEALMDYVPGPDFPTGAQIMGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 G + AY GRGS++IR + IE+ DR I++ EIPYQVNKA M+EK+A+LVREK++ Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEEIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLE 300 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 IA + DESDR G RVVIELKR A+ADV+LNQLYR+T LQ+ F NM+ALNG +PE+ TL Sbjct: 301 GIASIADESDRVGVRVVIELKRDATADVVLNQLYRFTPLQTSFGCNMLALNGGRPEQLTL 360 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 L F+AFREEVV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR Sbjct: 361 RDFLSHFIAFREEVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEAR 420 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 LM+R W A +I + + LIDD + + DGT LSEVQ RAIL+LRL RLT +G ++ Sbjct: 421 DRLMERRWPAHEIVEYLRLIDDPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVT 480 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 +EL L +I++ L IL+SR R++ II EL V+ PRRT IV+ D++DED I Sbjct: 481 DELAELAGKIRDYLAILASRERIMAIIATELREVRAAHAVPRRTEIVDWAGDLDDEDLIE 540 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 REDMVVT++ GY+KR PL+ +RAQRRGGKG + + +++D VT LF+ +THT +LFF++ Sbjct: 541 REDMVVTITSGGYIKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTT 600 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VY K WRLP+ ++GKA++NIL + QG + ++MP E E +W++ V FAT Sbjct: 601 DGMVYSLKCWRLPLAGRTSKGKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSD 660 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G+VRRN LSDF ++ ++GK AM+L ++ C +E+DI+L T G+ +RFP+ +R Sbjct: 661 GDVRRNALSDFAKVMKNGKRAMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 +F GR+S GVRG+ LA+GD+V+SM+++ H +A+ ER ++K A+ + D E Sbjct: 721 IFKGRSSTGVRGVRLAEGDKVVSMSVIRHFEAEPWERDAFVKRYRAELGGETEDEAETDR 780 Query: 775 LKNDSSV--EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 D + EG +S+ R E+ + ILT++ KG GK +SS+ + + R G+G+ A Sbjct: 781 DAEDEAEGGEGVLSDARYAEMLAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTA--F 838 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 K GALVA FPV DQ++L + G IR PV I SRA GV +F+T +E VV Sbjct: 839 EKSMRGGALVASFPVEPTDQVMLATSTGQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVV 898 Query: 893 SVERIRESEIVDEAES 908 SV R+ + DEAE+ Sbjct: 899 SVARVADP-GDDEAEA 913 >gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum AMB-1] gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum AMB-1] Length = 895 Score = 955 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 509/910 (55%), Positives = 674/910 (74%), Gaps = 34/910 (3%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + + + IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + Sbjct: 2 TTLPASPQFD--ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEA 59 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G +NK + K ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGD Sbjct: 60 GYHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGD 119 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL ++AH LL+D+ K+TVDF+ NYD S EP+VL ARYPN+LVNG GGIA Sbjct: 120 PPAAMRYTEARLARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIA 179 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGEV+D C A ID+P++ ++ LME++ GPDFPTG ILGR GI+ A T Sbjct: 180 VGMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLT 239 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS+V+RG HIE+ DRE IVVTEIPYQVNKA MLE+IAELVR+K+I I+DLRDES Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G R+V+E+KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE TL I+ AF+A Sbjct: 300 DRDGVRMVVEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIA 359 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FREEV+ RRT + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P AR +LM R+W Sbjct: 360 FREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWP 419 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D++ LI LID+ I DG LSEVQ +AIL+LRL RLTGL RD I +EL +G + Sbjct: 420 VGDVEPLIRLIDEPGRAI-EDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+ L ILSSR RL+ +++ EL+ ++++ TPRRT I E + + ED I REDMVVTV+ Sbjct: 479 IEAYLLILSSRPRLMEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVT 538 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GY+KRVPLS YRAQ+RGGKGRSG+ ++DEDF+T +F+V+THT VLFFSS G YK KV Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKV 598 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +RLP+G+PQARGKA++N+L L+ GE I+TIMP PEDE++W +L+V+F T G+VRRN LS Sbjct: 599 YRLPLGNPQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLS 658 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 DF ++ +GKIAMKL + ++SV+TC+ + +D+LL T G+ +RFP+ +R F R+S Sbjct: 659 DFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDST 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L D+VISM+I+ H D D + R ++K Sbjct: 719 GVRGIRLDGEDEVISMSILRHTDYDSETRDAFLK-------------------------- 752 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G++ ++ ++ ++QFILTV+E GFGKRTS++++RI+ R G GI D++ + G +V Sbjct: 753 GDLPADQMDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGLVV 810 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--S 900 A FPVN D I+LVSD G LIR+PV++IRIA R T+GV + TA++ERVVS R+ + S Sbjct: 811 ASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARLCDIGS 870 Query: 901 EIVDEAESTE 910 + E+ E Sbjct: 871 NGDEPDETDE 880 Score = 71.4 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 95/256 (37%), Gaps = 28/256 (10%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ V+ G V+R PLS + R GK + + + VL + G Sbjct: 643 VMFVTSKGDVRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDD-VLLATHRGKA 701 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------- 638 + V + ++R + + L+ + + ++ Sbjct: 702 IRFPVQDVRE--FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPADQ 759 Query: 639 -DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQEN 694 D+ +++ T++G +R ++ R G LD + V E+ Sbjct: 760 MDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHED 819 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 DI+L + G+ +R P+ IR AGR + GV + A+ ++V+S A + ++ DE Sbjct: 820 DIMLVSDGGKLIRMPVDDIR-IAGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEPDET 878 Query: 755 MKHMSAQRRLISGDTE 770 + ++G + Sbjct: 879 DEGAGDAAEDMAGGED 894 >gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2] gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2] Length = 889 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 579/870 (66%), Positives = 706/870 (81%), Gaps = 2/870 (0%) Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 + RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IY AL Sbjct: 1 MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NY Sbjct: 61 VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 DG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LM Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277 E+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNK Sbjct: 181 ELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNK 240 Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337 A+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F Sbjct: 241 ASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSF 300 Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397 NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+ Sbjct: 301 GCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360 Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457 DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAI Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420 Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 L+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRR Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRR 480 Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 T I G +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFV Sbjct: 481 TEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFV 540 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 T LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP P Sbjct: 541 TRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLP 600 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDI 696 EDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+ Sbjct: 601 EDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDV 660 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K Sbjct: 661 LLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLK 720 Query: 757 HMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 A+RR D ++I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY Sbjct: 721 RSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSY 780 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +F IS R GKGIRATD SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R Sbjct: 781 EFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGR 840 Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +TKGV IF+TA E+VVSVERI +++ +E Sbjct: 841 STKGVTIFNTADGEKVVSVERISDADSDEE 870 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702 V+ ++ G +R+ +F G A DEI +++ + ILL + Sbjct: 765 VLTVSEFGYGKRSSSYEFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 824 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 GQ +R P+ IR AGR++ GV + A G++V+S+ + AD+D + Sbjct: 825 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 883 Query: 763 RLISGD 768 + + Sbjct: 884 PAATQE 889 >gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] Length = 941 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 558/889 (62%), Positives = 695/889 (78%), Gaps = 6/889 (0%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ K Y K A Sbjct: 38 ENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLDHTKSYRKSAA 97 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + GEVMGKYHPHG+++IYDAL RMAQD+++R +LI+GQGNFGS+DGD PAA RYTECRL Sbjct: 98 VIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSIDGDKPAAMRYTECRLA 157 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + + LLDD+ K+TVDF+ NYDGS +EP+VL ARYPN+LVNG GGIAVGMATNIP HNLG Sbjct: 158 RISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLG 217 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DGC+A+ID PDI+L LME+I GPDFPTG +ILGR GIK+AY TGRGS+++RG +HI Sbjct: 218 EVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMILGRAGIKSAYETGRGSVIMRGKAHI 277 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + DRE I++ E+PYQVNKA+M+EKIAELVR+KRI I+ +RDESDRQGYRVVIE+KR Sbjct: 278 ETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAVRDESDRQGYRVVIEVKR 337 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A AD++LNQLYRYT LQS F N+VALNG KPE+ L+ +L+AFV FREEVV RRTK+L Sbjct: 338 DAVADIVLNQLYRYTPLQSSFGCNLVALNGGKPEQMNLVDMLRAFVGFREEVVTRRTKFL 397 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 LNK R RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD Sbjct: 398 LNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLMERRWPAKDVAPLIALIDD 457 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R Sbjct: 458 PRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNLIGAEIADYLDILSSRAR 517 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L I++ EL V++E PRRT I++ + +DED I RE+MVVTV+H GY+KRVPL+ Y Sbjct: 518 VLDIVRTELGEVREEFANPRRTEIIDSGYEHDDEDLIAREEMVVTVTHGGYIKRVPLAAY 577 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ RGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G YK KVW+LP+ PQ RGK Sbjct: 578 RAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIAYKLKVWKLPLAQPQGRGK 637 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L L GE ITTIMP PEDE SW++L V+FAT G VRRNKLSDF+Q+NR+GKIAM Sbjct: 638 AMVNLLPLQAGETITTIMPLPEDEGSWDSLDVMFATTRGTVRRNKLSDFVQVNRNGKIAM 697 Query: 677 KL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 KL D D I+ VE C+ +D+LLT+ G +RFP+ +RVF RNSVGVRGI + D V Sbjct: 698 KLDDENDGIIGVEVCSASDDVLLTSSAGYGIRFPVDDVRVFNSRNSVGVRGIRMGASDHV 757 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEERC 790 ISMAI+ A +ER+ Y+K SA RR S D E + + + +V ++ EER Sbjct: 758 ISMAIMRGFAATPEERVSYIKQASALRRAASADDGEDADLDVVADDEEVTVASSLPEERY 817 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILT++++G+GKR+SSYDFR S R GKGI+ TDVSK EIG LV FPV D+ Sbjct: 818 IEMGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKGIKVTDVSKEGEIGQLVGAFPVEDS 877 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 DQI+LVS+ G LIRVPV+ IR ASR+TKGV +F TAKDE VV+VERI E Sbjct: 878 DQIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAVERISE 926 >gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131] gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a)) [Rhodobacter sphaeroides KD131] Length = 920 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 484/919 (52%), Positives = 637/919 (69%), Gaps = 14/919 (1%) Query: 1 MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 MT+ ++EE G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRR Sbjct: 1 MTDRPEEPGDDEEMGRPLSGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 IL+ M + G +K Y K AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQG Sbjct: 61 ILYAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS+DGD AA RYTE R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+L Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNML 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235 VNG GGIAVGMATNIP HNLGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+ Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRS 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 G + AY GRGS+++R + +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I Sbjct: 241 GARKAYLEGRGSVIMRAKARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL Sbjct: 301 IAHVQDESDRVGVRVVIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLR 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 L F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR Sbjct: 361 DFLIHFLTFREDVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARE 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM R W A+DI D I LIDD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ + Sbjct: 421 RLMTRRWPAADIADYIRLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTD 480 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L +I++ LDIL SR R++ II EL VKD PRRT I E D+EDED I R Sbjct: 481 ELAELAAKIRDYLDILGSRERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIER 540 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 EDMVVT++ GY+KR PL+ +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ Sbjct: 541 EDMVVTITSGGYIKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTD 600 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY K WRLP+G A+GKA++NIL + G I +M E E W+ L VVFAT G Sbjct: 601 GMVYDLKCWRLPLGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEG 660 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 +VRRN+LSDF + R+GKIAMKL +++V C +++D+++ T LG+ +RFP + +RV Sbjct: 661 DVRRNRLSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRV 720 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 F+GR+S GVRGI LA GD+V+SM+++ H +AD ER Y+K R + E Sbjct: 721 FSGRDSTGVRGIRLASGDRVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADE 777 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + D+ G +S R E+ E ILT++ +G GK +SS+D+ + R G+G+ A K Sbjct: 778 EEDAVEAGQLSPTRYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKS 835 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G LVA FPV +DQ++L + G IRVPV +I SR+ GV +F T E VVSV Sbjct: 836 MRGGQLVASFPVEMSDQVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVA 895 Query: 896 RIRE----SEIVDEAESTE 910 RI + ++ V++AE E Sbjct: 896 RIADAGDTADGVEDAEPGE 914 >gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222] gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222] Length = 913 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 480/918 (52%), Positives = 635/918 (69%), Gaps = 15/918 (1%) Query: 1 MTEHIISSDEEEEKGITS----------VSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + + D+ E G + + I EM++SYL YA++VI+ RAIPDLRDGLK Sbjct: 1 MADIPENDDDTPENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+LF M + G +K Y K AR G+ MGKYHPHG+A+IYDAL RMAQD+S+ L L Sbjct: 61 PVHRRVLFAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS+DGD PAA RYTE R+ K + +LL D+ KDTV+F+ NYDG +EP VL AR Sbjct: 121 LDGQGNFGSMDGDSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPAR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230 +PN+LVNG GGIAVGMATNIP HNLGEVVD +A+I++PD+ + L+EI+ GPDFPTG + Sbjct: 181 FPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGI 240 Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290 ILGR+G + AY GRGSI++R + IE+T R+ I++ EIP+QVNKA+++EKIAEL +E Sbjct: 241 ILGRSGARKAYLEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKE 300 Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 KRI IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE Sbjct: 301 KRIEGIAHVQDESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALNGGRPE 360 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 + TL L F+ FREEVV RRT Y L KAR+RAHVL GLA+AV+N+DEVV IR S + Sbjct: 361 QLTLRDFLTHFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADA 420 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 AR LM R W A +I + + LIDD + + DGT LSE Q RAILELRL RLT LG Sbjct: 421 AEARERLMTRRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGV 480 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 ++ +EL SL I+E L IL+SR R++GII EL VK+ PRRT I + D++DE Sbjct: 481 QEVTDELKSLAEAIREFLAILASRERIMGIISDELREVKNLFAVPRRTEITDWAGDLDDE 540 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I REDMVVT++ GY+KR L+ +RAQRRGGKG SG+ +++D VT LF+ +THT +L Sbjct: 541 DLIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELL 600 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K WRLP+G A+GKA++NIL + G I +MP +S W+ V+F Sbjct: 601 FFTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIF 660 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +T G+VRRN LSDF + R+GKIAMKL E++ T+ +D++L T G+ +RF Sbjct: 661 STSEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQT 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF GR+S GVRGI LA GD+V+SM+I+ H +AD ER Y+K A + E Sbjct: 721 TDVRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAE 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 D+ VE IS+ER E+ E ILT++ +G GK +SS+D+ + R G+G+ A Sbjct: 781 --ADEDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAM 838 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K G LVA FPV+ +DQI+L + G IRVPV+ I SR+ GV +F+TA E Sbjct: 839 D--KAMRGGPLVASFPVDRDDQIMLATSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEE 896 Query: 891 VVSVERIRESEIVDEAES 908 VVSV RI E+ DEAE+ Sbjct: 897 VVSVARIAEN-GEDEAEA 913 >gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035] gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035] Length = 899 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 479/891 (53%), Positives = 620/891 (69%), Gaps = 7/891 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 15 SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ K+TV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+IDNPD++ + L++ I GPDFPTG ++LGR+G + AY GRGS++IR + E Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRTE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I++ EIPYQVNKA M+E+IAE R+KRI IA ++DESDR G RVVIELKR Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR+T +Q+ F NM+ALNG KPE+ TL L F+ FREEVV RRT Y L Sbjct: 315 ATAEVVLNQLYRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFITFREEVVARRTAYDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+RAHVL GLA+AV+N+DEVV IR S + AR++LM+R W A DI I LIDD Sbjct: 375 RKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 S+ +DGT LSEVQ RAIL+LRL RLT LG ++ +EL L +IKE L IL+SR R+ Sbjct: 435 SHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR L+ +R Sbjct: 495 MQIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ +DED VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP E W +L +VFAT G+VRRN LSDF + R+GKIAM Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C E+D++L T G+ +RFP + +RVF GR S GVRGI L D+V+S Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGDDRVVS 734 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+++ H DA D+R Y+K R E+ + ++ + + +S E+ E++ E Sbjct: 735 MSVIRHFDASADDRAAYLKM-----RRQLAGAEDDGTSDDEGNADAALSAEQFAEMQAAE 789 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++ +G GK +SS+D+ + R G G++A D K G +VA FPV DQI+L + Sbjct: 790 NLILTITARGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 KG IRVPV I SR+ GV +F+T E VVSV I E DE Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGAGEEVVSVAWIAEQAEEDETAE 898 >gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] Length = 1016 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 386/921 (41%), Positives = 568/921 (61%), Gaps = 65/921 (7%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 I+ ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ Sbjct: 128 IVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELN 187 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD Sbjct: 188 NDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDN 247 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL K AH LL D+ K+TV+F PNYDGS EP +L AR PN+L+NG GIAV Sbjct: 248 AAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAV 307 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TG Sbjct: 308 GMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTG 367 Query: 245 RGSIVIRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RG +V+R +H E + Q I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDES Sbjct: 368 RGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDES 427 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 D+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ Sbjct: 428 DKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLL 487 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW+ Sbjct: 488 HRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWD 547 Query: 424 ASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGL 468 + ++D++ + + + + DG LS+ Q + IL++RL RLTGL Sbjct: 548 SGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGL 607 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +D I E + +I + LDIL+ R+ II +EL ++ E RR++I +++ Sbjct: 608 EQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELD 667 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH Sbjct: 668 TEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDY 727 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V Sbjct: 728 ILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFV 784 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 785 FMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRF 844 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI+M + A E+ Sbjct: 845 DENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS------------ 891 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 +LT +E G+GKRT ++ R KG+ Sbjct: 892 -------------------------------VLTATENGYGKRTPISEYTRHGRGTKGMI 920 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + Sbjct: 921 AIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 978 Query: 889 ERVVSVERIRESEIVDEAEST 909 ++ ++R+ ES+ E + Sbjct: 979 NKLSGLQRVVESDAEGEDAAD 999 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 778 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 835 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 836 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 892 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 893 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 952 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + + Sbjct: 953 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGVTESDGEAPSA 1011 Query: 766 SGDT 769 Sbjct: 1012 DTTE 1015 >gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040] gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040] Length = 912 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 483/919 (52%), Positives = 636/919 (69%), Gaps = 17/919 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + + +E +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MSDTPETPENPDENLPQRPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVVD +A+I++PD+ + L+E + GPDFPTG V+LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYVPGPDFPTGGVMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + +E+ DR IVV EIPYQVNKA+M+EKIAE VREKRI Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +A ++DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ T Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + A Sbjct: 361 LRKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A+DI I LIDD ++T+ DGT LSEVQ RAILELRL RLT LG ++ Sbjct: 421 RHKLMTRRWPAADIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE L+ILSSR R++ II EL V++ PRRT IV+ DMEDED I Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ED VT LF+ +THT +LFF+ Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP G ++GKA++NIL + G I IMP DE W++L ++FAT Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRN+LSDF + R+GKIAMK + ++++ C++++DI+L T G+ +RFP Sbjct: 661 AGTVRRNRLSDFTNVMRNGKIAMKFEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPT 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF RNSVGVRGI L + D+V+SM+++ H+ ++R Y+K A L D Sbjct: 721 TEVRVFNSRNSVGVRGIKLGEDDEVVSMSVIRHSKYTPEQRSAYLKMRRAMAGLTDEDAS 780 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 D+ + N S E E+ E ILT++ G GK +SS+D+ + R G G+ A Sbjct: 781 -----DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAM 835 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K GALVA FPV +DQI+L + KG IRVPV+ I SR+ GV IF+T K E Sbjct: 836 D--KAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEE 893 Query: 891 VVSVERIRESEIVDEAEST 909 VVSV I ++ +E Sbjct: 894 VVSVAWIADNGDDEETVEE 912 >gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217] gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217] Length = 899 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 484/907 (53%), Positives = 627/907 (69%), Gaps = 10/907 (1%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + G SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + Sbjct: 2 DETPPERPSYSG-PSVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEG 60 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD Sbjct: 61 GNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGD 120 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 AA RYTE R+ K A +LL D+ KDTV+F+ NYDG +EP VL AR+PN+LVNG GGIA Sbjct: 121 NAAAMRYTEVRMDKPAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIA 180 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGEVVD +A+I+NPD++ + L++ I GPDFPTG ++LGR+G + AY Sbjct: 181 VGMATNIPPHNLGEVVDATLALIENPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLE 240 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS++IR + +E+ DR I++ EIPYQVNKA M+E+IAE REKRI I+ ++DES Sbjct: 241 GRGSVIIRAKTRVEEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDES 300 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ TL L F+ Sbjct: 301 DRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFIV 360 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FREEVV RRT + L +AR+RAHVL GLA+AV+N+DEVV IR S + AR +LM+R W Sbjct: 361 FREEVVARRTAFELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWP 420 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 A +I I LIDD S+ DGT LSEVQ RAIL+LRL RLT LG ++ +EL L + Sbjct: 421 AREILPYIALIDDPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGK 480 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IKE L IL+SR R++ II EL V+D PRRT+IV+ DMEDED I REDMVVTV+ Sbjct: 481 IKEYLAILASRERIMQIISDELREVRDLFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVT 540 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR L+ +RAQ+RGGKG SG+ +DED VT LF+ +THT +LFF++ G VYK K Sbjct: 541 SGGYIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKT 600 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 WRLP+G ++GKA++NIL + G I IMP E W +L +VFAT G+VRRN LS Sbjct: 601 WRLPLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALS 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF + R+GKIAM L E+++ C E+D++L T G+ +RFP + +RVF GR S G Sbjct: 661 DFTNVMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L D+V+SM+++ H DA DER Y+K R +E + ++ + + Sbjct: 721 VRGIRLLGNDRVVSMSVISHFDASADERAAYLKM-----RRQLAGADEDAAADDEGNADA 775 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 IS ER +E++L E ILT++ KG GK +SS+D+ + R G G++A D K G +VA Sbjct: 776 AISPERFEEMQLAENLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVA 833 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 FPV DQI+L + KG IRVPV I SR+ GV +F+T E VVSV I E Sbjct: 834 SFPVTLEDQIMLATSKGQSIRVPVMGISFRSRSAGGVKVFNTGTGEEVVSVAWIAEQ--A 891 Query: 904 DEAESTE 910 DE E+ E Sbjct: 892 DEDETAE 898 >gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1] gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides 2.4.1] Length = 907 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 480/901 (53%), Positives = 629/901 (69%), Gaps = 9/901 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 6 SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP H Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIE Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I L Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 IDD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL S Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GKA++NIL + G I +M E E W+ L VVFAT G+VRRN+LSDF + R+GK Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM+++ H +AD ER Y+K R + E + D+ G +S R E+ Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A K G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + +E V++AE Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900 Query: 910 E 910 E Sbjct: 901 E 901 >gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756] gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756] Length = 918 Score = 948 bits (2450), Expect = 0.0, Method: Composition-based stats. Identities = 502/917 (54%), Positives = 659/917 (71%), Gaps = 9/917 (0%) Query: 1 MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ + I ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF Sbjct: 1 MSDEHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G + YVK AR+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQGNFGS Sbjct: 61 MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTECR+ A LL DL KDTVDF NYDG QEP VL AR PN+LVNG Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+ +ID P+I D L++++ GPDFPTG I+GR G + Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEIIGRAGPRQ 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A TGRGS+++RGV+ +E RE I+VTEIPYQVNKA ++E IAELVR+K++ IAD+ Sbjct: 241 ALLTGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDES+R G R+VIELKR AS +VILNQLYR+T+LQS F VNM+ALN +PE+ L +L+ Sbjct: 301 RDESNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHKLLQ 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P AR L+ Sbjct: 361 LFVEFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVA 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 +SW A D+ L++LI D G + L++ Q RAIL L L+RLTGLGR++I NE + Sbjct: 421 KSWPAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAET 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I+ L++LS R+ ++ ++++EL+ V+++ PRR +IV+G DMEDED IVREDMV Sbjct: 481 LADAIRGYLELLSDRANIMAVVREELVEVREKFAVPRRCQIVDGDADMEDEDLIVREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TV+ GYVKR PL+ YR Q RGGKG+SG+ ++ED VT +F STH +LFF+S G VY Sbjct: 541 ITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+G +RGKA +N+L + GE IT+I+ PEDE++W+ L V+FAT+ G+VRR Sbjct: 601 KMKVWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + R+GKIAMKLD D I+ V C + D+LLTT G+C+RF + +RVFA R Sbjct: 661 NKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT---SLK 776 +S GVRG+ LA+GD+VISMA++ DA ER Y+KH A R + ++ Sbjct: 721 DSTGVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEGDDAPVAAEEG 780 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + + E +S ER EL E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK Sbjct: 781 EEDADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKR- 839 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LV FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER Sbjct: 840 -GGRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVER 898 Query: 897 IRESEIVD---EAESTE 910 + +S D E E Sbjct: 899 LADSGGDDNQGEDSGAE 915 >gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029] gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029] Length = 907 Score = 948 bits (2450), Expect = 0.0, Method: Composition-based stats. Identities = 480/901 (53%), Positives = 629/901 (69%), Gaps = 9/901 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 6 SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP H Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIE Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I L Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 IDD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL S Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GKA++NIL + G I +M E E W+ L VVFAT G+VRRN+LSDF + R+GK Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM+++ H +AD ER Y+K R + E + D+ G +S R E+ Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A K G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + +E V++AE Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900 Query: 910 E 910 E Sbjct: 901 E 901 >gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003] Length = 883 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 462/886 (52%), Positives = 620/886 (69%), Gaps = 5/886 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G +K Y K AR G+VMGK Sbjct: 1 MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K A FLL Sbjct: 61 YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D +A Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD+ +ALM+ + GPDFPTGA I+GR G + AY GRGS++IR + IE+ DR Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEEIRKDRF 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++ EIPYQVNKA M+EK+A+LVREK++ IA + DESDR G RVVIELKR A+ADV+L Sbjct: 241 AIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F NM+ALNG +PE+ TL L F+AFREEVV RRT Y L KAR+R+ Sbjct: 301 NQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARERS 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GLA+AV+N+DEVV IR S +P AR LM+R W A +I + + LIDD + + D Sbjct: 361 HILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSEVQ RAIL+LRL RLT +G ++ +EL L +I++ L IL+SR R++ II E Sbjct: 421 GTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L V+ PRRT IV+ D++DED I REDMVVT++ GY+KR PL+ +RAQRRGGK Sbjct: 481 LREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G + + +++D VT LF+ +THT +LFF++ G VY K WRLP+ ++GKA++NIL + Sbjct: 541 GLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPI 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QG + ++MP E E +W++ V FAT G+VRRN LSDF ++ ++GK AM+L + Sbjct: 601 PQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMELPEGVTL 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + C +E+DI+L T G+ +RFP+ +R+F GR+S GVRG+ LA+GD+V+SM+++ H Sbjct: 661 VDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHF 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEERCQELKLKEQFILT 802 +A+ ER ++K A+ + D E D + EG +S+ R E+ + ILT Sbjct: 721 EAEPWERDAFVKRYRAELGGETEDEAETDRDAEDEAEGGEGVLSDARYAEMLAAQDLILT 780 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 ++ KG GK +SS+ + + R G+G+ A K GALVA FPV DQ++L + G Sbjct: 781 ITAKGLGKISSSHSYPVRGRGGQGVTA--FEKSMRGGALVASFPVEPTDQVMLATSTGQS 838 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 IR PV I SRA GV +F+T +E VVSV R+ + DEAE+ Sbjct: 839 IRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADP-GDDEAEA 883 >gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] Length = 862 Score = 947 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 398/906 (43%), Positives = 577/906 (63%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+A+++N ++ +D L+++I GPDFPTG +I GR+GI +AY TGRG I +R Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGIINGRSGILDAYRTGRGKIYVRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE +E I+VTE+PY VNKA ++EKIAELV++K+I I LRDESD+ G RVVI Sbjct: 246 TEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN LY +T +Q++F +NMVAL +P+ L IL AF+ R EVV RR Sbjct: 306 ELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQPKTLNLKEILAAFIDHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GLAIA+AN+D V+ +I+ S +P A++ L+ R W + ++++ Sbjct: 366 TVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLE 425 Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + D +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 RAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL+S RL+ +I++EL VK + RRT I +++ ED I ED+VVT+SH Sbjct: 486 AELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PLS Y AQRRGG+G++ ++DEDFV L + +TH ++L FS+ G VY KV+ Sbjct: 546 EGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ +IN+L L++ ERIT I+P + ++ YV FAT G V++ +LS Sbjct: 606 QLPEASRTARGRPIINLLPLDENERITAILPVKSYD---DDKYVFFATGDGTVKKTELSA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + SG A+ L+ D ++ V ++I+L + G+ VRF S +R GR + GV Sbjct: 663 YSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM-GRTATGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L + D+V+S+ + + A Sbjct: 722 RGMKLGETDKVVSLIVPQNGGA-------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++ + +R+ G+ + V++ N G +V Sbjct: 744 ---------------ILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN--GKVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+I+L+++ GTL+R V+E+ + R T GV + TA+DE++VS+ER+ E E + Sbjct: 787 IQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPEGDE 846 Query: 905 EAESTE 910 + Sbjct: 847 SDAEGD 852 >gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3] gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3] Length = 891 Score = 947 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 468/880 (53%), Positives = 619/880 (70%), Gaps = 3/880 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 5 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 65 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A FLL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+ID+PD+ + L++ + GPDFPTG V+LGR+G + AY GRGS++IR + +E+ Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVEE 244 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I+V EIPYQVNKA M+EKIAE VREKRI +A ++DESDR G RVV+ELKR A Sbjct: 245 LRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRDA 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L F+ FREEVV RRT + L Sbjct: 305 TPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHDLR 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+HVL GLA+AV+N+DEVV IR S + AR +LM R W A+DI + LIDD Sbjct: 365 KARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDDPL 424 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + DGT L+EVQ RAIL+LRL RLT LG ++ +EL L +IKE L+IL SR R++ Sbjct: 425 SKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERIM 484 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 GII EL V+++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +RA Sbjct: 485 GIIADELREVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRA 544 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP +GKA+ Sbjct: 545 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 604 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP + W+ L +VFAT G+VRRN LSDF + R+GKIAMKL Sbjct: 605 VNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMKL 664 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 E+++ C++E+D++L T G+ +RFP + +RVF GR+S GVRGI L GD+V+SM Sbjct: 665 PEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSM 724 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +++ H +A+ ER ++K + + + ++ EG +++ER QE++ + Sbjct: 725 SVIRHFEAEPWERAEFIKRFRTILGA-EMEDDAAETDEDAVEGEGVLTDERYQEMQDAQD 783 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILT++ G GK +SS+D+ + R G+G++A G L A FPV +DQI+L + Sbjct: 784 LILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPR--GGTLAASFPVLMDDQIMLATS 841 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G IRVPV I SR+ GV +F+T+K E VVSV RI Sbjct: 842 GGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARIA 881 >gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] Length = 884 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 411/900 (45%), Positives = 571/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A+I++ +I +D LME I GPDFPT A+I GR GI AY TGRG I +R + Sbjct: 187 LSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 >gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] Length = 906 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 472/893 (52%), Positives = 632/893 (70%), Gaps = 7/893 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 1 MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 61 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+IDNPD+ + L++ + GPDFPTGA++LGR+G + AY GRGS++IR + +E+ Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRAKTRVEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNKA+M+EKIAE REKRI IA ++DESDR G RVV+ELKR A Sbjct: 241 IRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL G L AF+AFREEVV RRT Y L Sbjct: 301 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRGFLTAFIAFREEVVARRTAYDLR 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM+R W A DI + I LIDD + Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPT 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L IL+SR R++ Sbjct: 421 HRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIM 480 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL V+D+ PRRT I + DM+DED I RE+MVVTV+ GY+KR L+ +RA Sbjct: 481 EIIADELREVRDQFAVPRRTEITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTALADFRA 540 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G YK K WRLP G A+GKA+ Sbjct: 541 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTAKGKAI 600 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G + IMP E WN+L +VFAT G VRRN+LSDF + +GKIAMK Sbjct: 601 VNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNVKSNGKIAMKF 660 Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + + +++ C++E+D++L T G+ +RFP + +RVF RNSVGVRGI L+ D+V Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H +A +ER+ Y+K L + E + +++++V G +S ER E+ Sbjct: 721 VSMSVIRHFEASSEERVAYLKQRRLMAGLT--EDEAASDDEDETAVAGQLSPERYAEMSA 778 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ KG GK +SS+D+ + R G G+ A +K G ++A FPV DQ++L Sbjct: 779 VENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAW--TKSMSNGPIIACFPVEMPDQVML 836 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + KG IR+PV+ I SR+ GV +F+T K+E VVSV I + DE E+ Sbjct: 837 ATSKGQSIRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEA 889 Score = 50.2 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 25/246 (10%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYR------AQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED V+ V++ G R P + R + G SG V F S+ Sbjct: 676 SEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKVVSMSVIRHFEASSEE 735 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 V + + S A+ LS + ++ + Sbjct: 736 RVAYLKQRRLMAGLTEDEA--ASDDEDETAVAGQLSPERYAEMSAVENL----------- 782 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD----SRDEILSVETCTQENDILLTTKLG 703 ++ T G + + D+ + G + + S I++ + ++L T G Sbjct: 783 ILTITAKGAGKLSSSHDYP-VRGRGGLGVTAWTKSMSNGPIIACFPVEMPDQVMLATSKG 841 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 Q +R P+ I F R++ GVR + K ++V+S+A + + ++ AQ + Sbjct: 842 QSIRIPVDGI-SFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEAQTENQTEAQDQ 900 Query: 764 LISGDT 769 Sbjct: 901 SPPDQD 906 >gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444] gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444] Length = 926 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 522/926 (56%), Positives = 681/926 (73%), Gaps = 18/926 (1%) Query: 1 MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 M++ DE E + GI +SI E+++SYL YA++VI+ RA+PD+RDGL Sbjct: 1 MSDPTTPPDEPETPENGAGKPPPQDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHRRILF M + G +K Y K ARI G+V+GKYHPHG++A+YDAL RMAQ +S+ + Sbjct: 61 KPVHRRILFAMNEGGNTPDKPYSKSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++GQGNFGS+D DPPAA RYTE R+ K LL DL KDTVDF+ NYDG +EPVVL A Sbjct: 121 LVDGQGNFGSIDNDPPAAMRYTESRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPA 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229 ++PN+LVNGGGGIAVGMATNIP HNLGE++D +A+I++P I +AL EI+ GPDFPTGA Sbjct: 181 QFPNLLVNGGGGIAVGMATNIPPHNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 +I+G++G + A TGRGS+++R + IE+ RE I+V+EIPYQVNKAAM+ KIAELVR Sbjct: 241 LIMGQSGSRKALMTGRGSVIMRSKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVR 300 Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349 EK+I I+DLRDESDR G RVVIELKR ASADV+LNQLYR++ LQS F+VNM+ALNG +P Sbjct: 301 EKKIEGISDLRDESDRNGIRVVIELKRDASADVVLNQLYRFSQLQSSFAVNMLALNGGRP 360 Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409 E L +L+ F+ FREEV+VRRTK+ L KARDRAHVLVGLA+AVAN+DEV+R+IR SP+ Sbjct: 361 ELMNLRKVLEYFITFREEVIVRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPD 420 Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 P TAR+ L+ ++W D+ LIDLI D G +GT+YLS+ Q R+IL L L RLTGL Sbjct: 421 PATARQRLLDKAWPQQDMGPLIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 GRD+I NE L +I E L+IL SR R+LGIIK EL VK++ PRR++ V+G +DME Sbjct: 481 GRDEIGNEAKGLADKIAEYLEILRSRPRILGIIKAELAEVKEKFAVPRRSQFVDGGVDME 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I EDMVVTV+H GYVKR PLS YR Q RGGKGRSG+ M+DEDF+ +F +THT Sbjct: 541 DEDLIEVEDMVVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTE 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFFSS G VYKEKVWRLPIG P +RGKAL+NI L ERI ++MP P+ E + +L V Sbjct: 601 ILFFSSAGMVYKEKVWRLPIGGPTSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDV 660 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +FAT+ GNVRRN+L+DF ++NR+GKIAMKLD D I+SV+ C++++D+LLTT LGQ +RF Sbjct: 661 MFATRSGNVRRNRLADFTRVNRAGKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRF 720 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ +RVFAGR+S GVRGI L D VISM I+ H +E Y+KH +A RR ++G+ Sbjct: 721 AVTDVRVFAGRDSTGVRGIRLGAEDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGE 780 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 EEI+ +++ E +S ER EL E+FI TV++ G GKR+S+YD+R++ R GKG+ Sbjct: 781 EEEISDDEDEVVAEAALSAERIAELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLV 840 Query: 829 ATDVSKINEIG----ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 A ++ ++ G + FPV D D+++LV+D G LIR PV++IRIA R+T GV + Sbjct: 841 AQNIWGRDKKGGPVKKVAQSFPVGDGDEVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLR 900 Query: 885 TAKDERVVSVERIRESEIV--DEAES 908 T ERVVS R+ + D+AE Sbjct: 901 TGDGERVVSAARLVDDGEGGMDKAEG 926 >gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] Length = 928 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 486/918 (52%), Positives = 638/918 (69%), Gaps = 17/918 (1%) Query: 2 TEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 ++ + + +E +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHR Sbjct: 18 SDTPETPENPDENLPARPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHR 77 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQ Sbjct: 78 RILYAMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQ 137 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG +EP VL AR+PN+ Sbjct: 138 GNFGSMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNM 197 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 LVNG GGIAVGMATNIP HNLGEVVD +A+I++PD+ + L++ + GPDFPTG V+LGR Sbjct: 198 LVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGR 257 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 +G + AY GRGS++IR + +E+ DR IVV EIPYQVNKA+M+EKIAE VREKRI Sbjct: 258 SGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIE 317 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 +A ++DESDR G RVV+ELKR A+A+V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL Sbjct: 318 GVAHVQDESDRNGVRVVVELKRDATAEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTL 377 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + AR Sbjct: 378 RKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAR 437 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 ++LM R W ASDI I LIDD ++T+ DGT LSEVQ RAILELRL RLT LG ++ Sbjct: 438 QKLMTRRWPASDIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVT 497 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 +EL L +IKE L+ILSSR R++GII EL V++ PRRT IV+ DM+DED I Sbjct: 498 DELEELAAKIKEYLEILSSRERIMGIIADELTEVRNSFAVPRRTEIVDWSGDMDDEDLIE 557 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ Sbjct: 558 REDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTT 617 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VYK K WRLP G A+GKA++NIL + G I IMP E WN+L ++FAT Sbjct: 618 DGMVYKLKTWRLPQGGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSA 677 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711 G VRRN+LSDF + R+GKIAMK + +E +++ C++++DI+L T G+ +RFP + Sbjct: 678 GTVRRNRLSDFTNVMRNGKIAMKFEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTT 737 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RVF RNSVGVRGI L GD+V+SM+++ H+ ++R Y+K A L D Sbjct: 738 EVRVFNSRNSVGVRGIKLGDGDEVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDEDAS- 796 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 D+ + N S E E+ E ILT++ G GK +SS+D+ + R G G+ A D Sbjct: 797 ----DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD 852 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 K GALVA FPV +DQI+L + KG IRVPV+ I SR+ GV IF+T K E V Sbjct: 853 --KAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEV 910 Query: 892 VSVERIRESEIVDEAEST 909 VSV I ++ +E Sbjct: 911 VSVAWIADNGDDEETVEE 928 >gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] Length = 890 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 409/905 (45%), Positives = 574/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A+I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ SW ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 Query: 906 AESTE 910 E Sbjct: 848 ILDGE 852 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 62/417 (14%), Positives = 133/417 (31%), Gaps = 38/417 (9%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NP+ + + + + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDARRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ + + + +++ + I++ T G VR + Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 S + GRN+ GV I A+ + V+ + V + D + + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGGEDNAA 865 >gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15] gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000] gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15] gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000] Length = 919 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 500/914 (54%), Positives = 657/914 (71%), Gaps = 7/914 (0%) Query: 1 MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ + I ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF Sbjct: 1 MSDDHNTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G + YVK AR+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQGNFGS Sbjct: 61 MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTECR+ A LL DL KDTVDF NYDG QEP VL +R PN+LVNG Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+ +ID PD+ D L++++ GPDFPTG I+GR G + Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQ 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A TGRGS+++RGV+ +E+ RE I+VTEIPYQVNKA ++E IAELVR+K+I +AD+ Sbjct: 241 ALLTGRGSVIMRGVASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDES+R G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN +PE+ L +++ Sbjct: 301 RDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQ 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P AR L+ Sbjct: 361 LFVDFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVA 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 +SW A D+ L++LI D G + L++ Q RAIL L L+RLTGLGRD+I NE + Sbjct: 421 KSWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAA 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I+ L++LS R+ ++ ++++EL+ V+++ PRR +IV+G DMEDED IVREDMV Sbjct: 481 LADAIRGYLELLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TV+ GYVKR PL+ YR Q RGGKG+SG+ ++ED VT +F STH +LFF+S G VY Sbjct: 541 ITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K KVWRLP+G +RGKA +N+L + GE IT+I+ PEDE++W L V+FAT+ G+VRR Sbjct: 601 KMKVWRLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + R+GKIAMKLD D I+ V C + D+LLTT G+C+RF + +RVFA R Sbjct: 661 NKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----SL 775 +S GVRG+ L GDQVISMA++ DA ER Y+KH A R G+ E T Sbjct: 721 DSTGVRGVKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADD 780 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ E +++ ER EL E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK Sbjct: 781 GDEEVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKR 840 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G LV FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVE Sbjct: 841 --GGRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVE 898 Query: 896 RIRESEIVDEAEST 909 R+ +S D Sbjct: 899 RLADSGGDDNQGED 912 >gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] Length = 884 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 409/905 (45%), Positives = 572/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVTPTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 Query: 906 AESTE 910 E Sbjct: 848 ILDGE 852 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 65/434 (14%), Positives = 136/434 (31%), Gaps = 38/434 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NPE + + + + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTIIGELIFILENPERLMEVIREELVAIKEQYNDARRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPETQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ + + + +++ T + I++ T G VR + Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVTPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V + D + + Sbjct: 810 SEV-SIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGGEENAALNT 868 Query: 771 EITSLKNDSSVEGN 784 E + Sbjct: 869 PEEDEPAADEAEDD 882 >gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179] Length = 877 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 417/905 (46%), Positives = 578/905 (63%), Gaps = 41/905 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M G ++NK Y K Sbjct: 6 KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVD++PNYDGS P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A IDN I +D LM I GPDFPT A+I G+ GI+ AY TGRG I IR Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIYIRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +++LN LY T LQ F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 VKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ + W +++ ++ Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + G +LSE Q +AIL+LRL +LTGL + I +E SL I Sbjct: 426 AGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDVIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S +RL+ +I++EL +K + + PRRT I D+ ED I ED+VVT+SH Sbjct: 486 ELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLINPEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L + ERIT I+P E + ++V AT G V++ L++F Sbjct: 606 LPQASRGARGRPIVNLLPLEENERITAILPVKEYA---EDKFIVMATAGGLVKKTALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GVR Sbjct: 663 SRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA ++ D EE + + D S++ +I Sbjct: 722 GIKLA---------------------------LTNDISDEENDNEESGNDETDQSLDLSI 754 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 755 DKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSERN--GKVVAAA 812 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +NDQI+L++D GTL+R V EI + R T+GV + T+ E+VVS+ER+ + + ++ Sbjct: 813 QVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERVCDDDEEND 872 Query: 906 AESTE 910 + E Sbjct: 873 TVAEE 877 >gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] Length = 901 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 415/918 (45%), Positives = 586/918 (63%), Gaps = 42/918 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 7 MTDLV---QDNTHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+ Sbjct: 64 HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM I GPDFPT A+I GR GI+ A Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALINGRKGIEEA 243 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + +E E IVV EIPYQVNKA ++EKIA+LV+EK+I I+ + Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAIT 303 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D SD+ G R+ I++KR A +V+LN LY T LQ F +N+VAL+ +P+ L +++A Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPETA+REL+ + Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQ 423 Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472 W + D++ + DG YL+EVQ +AIL+LRL +LT LG D+ Sbjct: 424 PWKLGHVADMLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L I E L IL S RL+ +I++EL ++++ + PRRT I D+ ED Sbjct: 484 ILDEYQKLLEVIGELLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDL 543 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I +ED+VVT+SH GYVK PL+ Y AQRRGGKG+S ++EDF+ L + +TH ++L F Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G +Y KV++LP S +RG+ ++NIL L++ ERIT I+P E + +VV AT Sbjct: 604 SSRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYE---EDKFVVMAT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA Sbjct: 661 AGGIVKKISLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESA 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA + + E+I Sbjct: 721 VRAM-GRAATGVRGIKLA-------------------------LTNDLSDDESAVEIEDI 754 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + +D ++ N+ + + + ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 755 SDDNSDDILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKV 814 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R VNEI + R T+GV + T +DE +V Sbjct: 815 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTEDETLV 872 Query: 893 SVERIRESEIVDEAESTE 910 ++R+ E + E +E Sbjct: 873 GLQRVCEVDEEAEDFDSE 890 >gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025] gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025] Length = 904 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 472/899 (52%), Positives = 623/899 (69%), Gaps = 7/899 (0%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y Sbjct: 4 PHGGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYT Sbjct: 64 RKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP Sbjct: 124 EVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R Sbjct: 184 PHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVV Sbjct: 244 AKVRVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV R Sbjct: 304 IELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVAR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I Sbjct: 364 RTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYI 423 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LIDD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL Sbjct: 424 RLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDIL 483 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SR R++ II EL VK PRRT I E D+EDED I REDMVVT++ GY+KR Sbjct: 484 GSRERIMAIISDELREVKALFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRT 543 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G Sbjct: 544 PLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGR 603 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++NIL + G I +M E E+ W+ L VVFAT G+VRRN+LSDF + R+ Sbjct: 604 TAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTNVKRN 663 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAMKL +++V C + +D+++ T +G+ +RF + +RVF+GR+S GVRGI LA+ Sbjct: 664 GKIAMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGIRLAE 723 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+SM+++ H +AD ER Y+K + + ++ G +S R Sbjct: 724 GDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAESDEDEDAIEA---GQLSPTRYA 780 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ E ILT++ +G GK +SS+D+ + R G+G+ + K G LVA FP+ +D Sbjct: 781 EMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTS--FEKSMRGGPLVACFPIEMSD 838 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 Q++L + G IRVPV +I SR+ GV +F T +E VVSV RI + D AE E Sbjct: 839 QVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGGNEEVVSVARIA--DAGDTAEVIE 895 >gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] Length = 876 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 411/904 (45%), Positives = 575/904 (63%), Gaps = 67/904 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MDRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVDGC+ +IDN +D L+EII GPDFPTG +I GR GI AY TGRG I +R + Sbjct: 187 LTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIYVRAKT 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIEL Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +V+LN LY T +Q++F +NMVAL +P+ F L +L+AF+ R EVV RRT Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRREVVTRRTV 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+RAH+L GLAIA+AN+D ++ +IR SP P AR L+ + W+ ++ +++ Sbjct: 367 YELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEKA 426 Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + DG YL+ Q +AIL+LRL +LTGL + I +E SL +I E Sbjct: 427 GDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL +VK + R T I D+ ED I +ED+VVT+SH G Sbjct: 487 LLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS+G VY +V++L Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L +GERIT I+P E + +++FAT G V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLGEGERITAILPVEEYS---ADKFILFATAKGTVKKTALNAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + SG A+ L DE++ V N+++L + G+ VRF +R GR + GVRG Sbjct: 664 RPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAM-GRTATGVRG 722 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L D+V+S+ + Sbjct: 723 INLEGSDRVVSLIV---------------------------------------------- 736 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ ILTV+E GFGKRT ++ +R+ KG+ + VS+ N G +V Sbjct: 737 -------PDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERN--GLVVGAVQ 787 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V +ND+I+L++++GTL+R V+E+ R T+GV + TA+ E+VV +ERI E E+ + Sbjct: 788 VGENDEIMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESL 847 Query: 907 ESTE 910 E Sbjct: 848 LEGE 851 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 99/252 (39%), Gaps = 15/252 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + ++ + G VK+ L+ Y G + D+D + + I + V+ Sbjct: 637 EEYSADKFILFATAKGTVKKTALNAYSRPLSSGIRAINLA--DDDELIGVNITEGNNEVM 694 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + ++ A G + ++L +R+ +++ + ++ Sbjct: 695 LFSDAGKVVRFNEDQVRAMGRTATG---VRGINLEGSDRVVSLI------VPDEDGAILT 745 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 T++G +R ++ +R+ K + + + + + ++I+L T G VR Sbjct: 746 VTENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDEIMLITNRGTLVR 805 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S + GRN+ GVR I A+G+QV+ + + + D + + Sbjct: 806 TRVSEVSEV-GRNTQGVRLIRTAEGEQVVGLERIDEVEVDESLLEGEIDTEAEGESQPEA 864 Query: 768 DTEEITSLKNDS 779 + + + D Sbjct: 865 QSGDTEATGADE 876 >gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] Length = 885 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 423/904 (46%), Positives = 588/904 (65%), Gaps = 39/904 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K Sbjct: 6 QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIAE V+EK+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE+A+REL+ R W + +++ Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 426 TGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P+S Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S +RG+ ++NIL LN+ ERIT I+P E + +VV AT G V++ L++F Sbjct: 606 LPQASRGSRGRPIVNILPLNENERITAILPVTAYE---EDKFVVMATAGGIVKKIALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVR Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA +G+ EE++ + +++ NI Sbjct: 722 GIKLA-------------------------LTNDLNDDESAGEIEEVSDDNTEETLDLNI 756 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 757 DKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAAT 814 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI+L++D GTL+R V+E+ I R T+GV + T+++E VVS+ERI + + + Sbjct: 815 QVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERICDVDDEEG 874 Query: 906 AEST 909 + + Sbjct: 875 EQES 878 >gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31] gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31] Length = 922 Score = 943 bits (2436), Expect = 0.0, Method: Composition-based stats. Identities = 498/922 (54%), Positives = 657/922 (71%), Gaps = 14/922 (1%) Query: 1 MTEHI-----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M++ + +T ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR Sbjct: 1 MSDDQNTIPGSPASPASRGDVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +LF M + G + YVK AR+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQG Sbjct: 61 VLFSMHEQGQTPERSYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGSVDGD PAA RYTECR+ A LL DL KDTVDF+ NYDG QEPVVL +R PN+L Sbjct: 121 NFGSVDGDMPAAMRYTECRMAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235 VNG GGIAVGMATNIP HNLGE+VD C+ +ID PD+ D L++++ GPDFPTG I+GR Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEIIGRA 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 G + A TGRGS+++RG++ +E+ RE I++T IPYQVNK+ ++E IAE+VR+KRI Sbjct: 241 GPRQALLTGRGSVIMRGLATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 ++D+RDES+R G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN +P + L Sbjct: 301 VSDIRDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPSQMGLR 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P AR Sbjct: 361 ELIDIFVKFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARE 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ ++W A D+ L++LI D G + L++ Q RAIL L L+RLTGLGRD+I N Sbjct: 421 RLVAKAWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGN 480 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E SL IK LD+LS R+ ++ ++++EL+ V+++ PRR +IV+G D+EDED IVR Sbjct: 481 EAASLAEAIKGFLDLLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLIVR 540 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 EDMV+TV+ GYVKR PL+ YR Q RGGKG+SG+ + ED VT +F STH +LFF+S Sbjct: 541 EDMVITVTLGGYVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSG 600 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VYK KVWRLP G +RGKA +N+L + GE IT+I+ PEDE++W+ L V+FAT+ G Sbjct: 601 GKVYKMKVWRLPQGVANSRGKAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSG 660 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 +VRRNKLSDF+ + R+GKIAMKLD D I+ V C DILL T G+C+RF +RV Sbjct: 661 SVRRNKLSDFVDVRRNGKIAMKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRV 720 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 FA R+S GVRG+ LA GD VISM+++ + DA ER Y+KH A R + + +E + Sbjct: 721 FASRDSTGVRGVRLAPGDSVISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAA 780 Query: 776 KNDSSV---EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 DS E +++ ER EL E+ +LTVS +GFGKRTS+YD+R + R G+G+ A D+ Sbjct: 781 VEDSEEDVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDL 840 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 SK G LV FPV+++DQI+LV+D G LIRVPV++IR+A+R T+GV IF TA DE VV Sbjct: 841 SKR--GGKLVGSFPVDESDQILLVTDAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVV 898 Query: 893 SVERIRESEIV----DEAESTE 910 SVER+ E+ DE E+ E Sbjct: 899 SVERLAETGGDDSTGDENEADE 920 >gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] Length = 927 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 489/917 (53%), Positives = 657/917 (71%), Gaps = 11/917 (1%) Query: 1 MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 MT+ + I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHR Sbjct: 1 MTDDSYENAATPIVPGGGGSDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M + + + Y KCAR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+L++GQ Sbjct: 61 RILYSMHDLNMTPERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQ 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGSVDGD PA+ RYTE ++ AA L+ D+ KDTVDF+PNYD EPVVL +R PN+ Sbjct: 121 GNFGSVDGDMPASMRYTEAKMAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNL 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 LVNG GGIAVGMATNIP HNLGEVVD +A++D+P++ DAL++I+ GPDFPTG I+GR Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIMGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 T +NA GRGS+++RG + +E+ DRE IVVTE+PYQVNK ++E+IAE+VREKR+ Sbjct: 241 TAPRNALRDGRGSVIVRGRASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLE 300 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I+D+RDESDRQG R+VIELKR AS DVILNQL+RYT++QS F VNM+ALN +PE+ L Sbjct: 301 GISDVRDESDRQGMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGL 360 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 +L+ F+ FREEVVVRR K+ LNKARDR HVLVGLA+AVAN+DEV+ IIR S +P AR Sbjct: 361 RDLLQIFLDFREEVVVRRVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEAR 420 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 L + W D+ L++LI D + + ++ L++ Q RAIL L L+RLTGLGRDDI Sbjct: 421 ERLQAKPWPVGDMMALVELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIF 480 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 E N L I+ L ILS R +L II+ +L+ VKD+ PRRT I EG +MEDED I Sbjct: 481 GEANGLADTIQGHLTILSDRKNVLAIIRDDLIDVKDKFAVPRRTLIGEGDGEMEDEDLIP 540 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 REDMVVTV+H GYVKRV L+ YR Q RGGKG+SG+ M+DED +T +F STHT VLFF++ Sbjct: 541 REDMVVTVTHGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFAT 600 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G YK K WRLP+G+PQ+RGKA +N+L + G+ I ++P PEDE++W + ++FAT Sbjct: 601 NGKAYKLKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSS 660 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G+VRRNKLSDF +NR+GKIAMKL+ D ++ V CT ++D+LLTT LG+ +RF +R Sbjct: 661 GDVRRNKLSDFATVNRAGKIAMKLEGDDRMVGVGLCTADDDVLLTTALGRAIRFKADDVR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--- 771 VF GR+S GVRG+ L GD+VISMAI+ DA +ER Y+KH +A R+ ++G E Sbjct: 721 VFKGRDSTGVRGVRLQDGDEVISMAILGRVDATPEERSAYVKHANAMRKALAGAEAEEDV 780 Query: 772 -ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + D + ++ ER EL EQFILTV+E GFGKR+S+Y++R + R G+G+ A Sbjct: 781 AAPAEAEDEVADAALTVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAH 840 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + L A FPV + D ++LV+ G +IR ++++RI R+++GV IF T KDE+ Sbjct: 841 GLGGRAGT-RLAAAFPVEETDDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEK 899 Query: 891 VVSVERIRESEIVDEAE 907 VVSVER+ ES DEA+ Sbjct: 900 VVSVERLPESGGSDEAD 916 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTT 700 +++ T+ G +R+ ++ + + + + + + +D+LL T Sbjct: 807 EQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEETDDLLLVT 866 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 GQ +R + +R GR+S GV K ++V+S+ + + + + + A Sbjct: 867 SGGQMIRTRMDQVR-IVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEADVASEEGGEA 925 Query: 761 QR 762 + Sbjct: 926 EA 927 >gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] Length = 875 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 413/892 (46%), Positives = 570/892 (63%), Gaps = 67/892 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N DI ++ LM I GPDFPT A+I GR GI++AY TGRG I +R Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIYLRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVVTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A A+VILN LY T LQ+ F +NMVAL+ +P F L +LK FV R EVV RRT Sbjct: 306 CKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQPRLFNLKDMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+DE++ +IR + P AR L R W+ + +++ Sbjct: 366 IFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLEA 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + I +E L I Sbjct: 426 TGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + ILSS RL+ +I++EL +V+D RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLINQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 546 GYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L Q ERIT I+P E E ++ +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNLLPLEQDERITAILPVKEYE---DDKFVFMATSDGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ +ND++L +K G+ VRF S +R GR + GVR Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + Sbjct: 722 GIKLAEGDKVVSLIV--------------------------------------------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 737 --------PHNEGDVLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERN--GCVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ + +++++ GTL+R V E+ R T+GV + T++ ERVV ++RI Sbjct: 787 QVDTGYEFMMITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVVGLQRI 838 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 99/249 (39%), Gaps = 15/249 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + R G V +R+ D + + I V+ F Sbjct: 639 YEDDKFVFMATSDGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDITWGDNDVMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + ++ A A + + L +G+++ +++ N V+ T Sbjct: 697 SKSGKVVRFHESQVRAMGRTA---AGVRGIKLAEGDKVVSLI------VPHNEGDVLTVT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +L ++ +R+ + + + + + + ++ T G VR Sbjct: 748 ENGYGKRTELCEYPAKSRATQGVVSIKVSERNGCVVGAVQVDTGYEFMMITNGGTLVRTR 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ + GRN+ GVR I ++G++V+ + + + + + + + + Sbjct: 808 VAEV-SQVGRNTQGVRLIRTSEGERVVGLQRIEEPEEELLPSEEGGELATQTVSEVPAED 866 Query: 770 EEITSLKND 778 ++ Sbjct: 867 AANDEASDE 875 >gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] Length = 905 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 460/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G NK Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IRG + IE R+ I++TEIPY VNKA ++EKIA++V+EKRI I+DLRDES++ G R Sbjct: 243 IRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE VV Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ E N + +++ Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEE-----FNPEELGVSLTAPA 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + IRI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 887 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 421/905 (46%), Positives = 584/905 (64%), Gaps = 39/905 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIAE V++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ R W + D++ Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++NIL LN+ ERIT I+P E + +VV AT G V++ L++F Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMATAGGIVKKIALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVR Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA + + E+++ + +++ NI Sbjct: 722 GIKLA-------------------------LTNDLSDDESAVEIEDVSDDNAEETLDLNI 756 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +NDQI+L++D GTL+R V+E+ I R T+GV + T++ E VVS+ERI E + + Sbjct: 815 QVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874 Query: 906 AESTE 910 TE Sbjct: 875 ENPTE 879 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 25/252 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + VV + G VK++ L+ + R G + +RDED + + I ++ F Sbjct: 639 YEEDKFVVMATAGGIVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635 SS G V + + + AL N LS ++ + Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLSDDESAVEIEDVSDDNAEETLDLNI 756 Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690 NN ++ AT++G +R KL ++ +R+ K + + ++++ Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + + I+L T G VR +S + GRN+ GVR I ++ + V+S+ + D + E Sbjct: 817 EENDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875 Query: 751 RICYMKHMSAQR 762 +++ Sbjct: 876 NPTESAVENSEE 887 >gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] Length = 888 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 409/905 (45%), Positives = 571/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 Query: 906 AESTE 910 E Sbjct: 848 ILDGE 852 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 65/439 (14%), Positives = 140/439 (31%), Gaps = 38/439 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NPE + + ++ + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTVIGELIFILENPERLMEVIREELVAIKELYNDARRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ + + + +++ + I++ T G VR + Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V + D + + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGSEEKTALNT 868 Query: 771 EITSLKNDSSVEGNISEER 789 D + +G+ + Sbjct: 869 PEDEDAADEAKDGDDEDNN 887 >gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957] gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CFBP2957] Length = 885 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 384/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLREVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ + + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 DMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L G QVI+M + A E+ Sbjct: 719 RPM-GRQARGVRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852 Query: 894 VERIRESEIVDEAEST 909 ++R+ ES+ E + Sbjct: 853 LQRVVESDAEGEDAAD 868 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L G+++ ++ P + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEDGQQVIAMLVAPAETAGEGEQAVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGATESDGEAPSA 880 Query: 766 SGDT 769 Sbjct: 881 DTTE 884 >gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides] Length = 907 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 474/901 (52%), Positives = 626/901 (69%), Gaps = 9/901 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 6 SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP H Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIE Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+R+H+L GLA+AV+N+DEVV IR +P AR LM R ++DI D I L Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRL 425 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 IDD S+TI DGT LSE+Q RAIL+LRL+ LT +G ++ +EL L +I++ LDIL S Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGS 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GKA++NIL + G I +M E W+ L VVFAT G+VRRN+LSDF + R+GK Sbjct: 606 KGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM+++ H +AD ER Y+K R + E + D+ G +S R E+ Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTQEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A K G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + ++ V++AE Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGETADGVEDAEPG 900 Query: 910 E 910 E Sbjct: 901 E 901 >gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] Length = 885 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 383/916 (41%), Positives = 566/916 (61%), Gaps = 65/916 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ K+TV+F PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLSRAESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I Sbjct: 482 VQEYREVMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L +G QVI+M + A E+ Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852 Query: 894 VERIRESEIVDEAEST 909 ++R+ ES+ E + Sbjct: 853 LQRVVESDAEGEDAAD 868 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADSGAESDGDAPGA 880 Query: 766 SGDT 769 Sbjct: 881 DTAE 884 >gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000] gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum GMI1000] Length = 885 Score = 941 bits (2433), Expect = 0.0, Method: Composition-based stats. Identities = 383/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM R+W++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L +G QVI+M + A E+ Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852 Query: 894 VERIRESEIVDEAEST 909 ++R+ ES+ E + Sbjct: 853 LQRVVESDAEGEDAAD 868 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + D DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--DGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDA 880 Query: 766 SGDT 769 Sbjct: 881 DTAE 884 >gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264] Length = 933 Score = 941 bits (2433), Expect = 0.0, Method: Composition-based stats. Identities = 489/908 (53%), Positives = 646/908 (71%), Gaps = 6/908 (0%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 I +SI DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + + Sbjct: 22 PLPPSSGGDIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMT 81 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 + Y KCAR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+LI+GQGNFGSVDGD PA Sbjct: 82 PERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPA 141 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 + RYTE R+ AA LL D+ KDTVDF+PNYD EPVVL AR PN+LVNG GGIAVGM Sbjct: 142 SMRYTEARMAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGM 201 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGE+VD C+A++D+P++ DAL++I+ GPDFPTG ILGRT +NA GRG Sbjct: 202 ATNIPPHNLGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEILGRTAPRNALRDGRG 261 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+V+RGV+ +E DRE IVVTE+P+QVNK ++E+IAE+VREKR+ I+D+RDESDR Sbjct: 262 SVVVRGVASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRA 321 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR AS DVILNQL+RYT++QS F VNM+ALN +PE+ L +L+ F+ FRE Sbjct: 322 GMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRKLLEVFLDFRE 381 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVVVRR K+ L KARDR HVLVGLA+AVAN+DEV+ IIR S +P AR L ++W D Sbjct: 382 EVVVRRVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGD 441 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + L++LI D + ++ L++ Q RAIL L L+RLTGLGRDDI E L I+ Sbjct: 442 MIALVELIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQG 501 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L ILS R +L II+++LL V+++ PRRT I EG ++EDED I REDMVVTV+H G Sbjct: 502 HLTILSDRKNILAIIREDLLDVRNQFAVPRRTLIGEGDFELEDEDLIPREDMVVTVTHGG 561 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKRV L+ YR Q RGGKG+SG+ M+DED +T +F STHT VLFF++ G YK KVWRL Sbjct: 562 YVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVWRL 621 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+G+P +RGKA +N+L + G+ I ++P PEDE++W + ++FAT+ G+VRRNKLSDF Sbjct: 622 PLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSDFA 681 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +NR+GKIAMKL+ D ++ V CT E+D+LLTT G+ +RF +RVF GR+S GVRG Sbjct: 682 TVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGVRG 741 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS-----V 781 + L D VISMA++ DA DER Y+KH +A R+ +E T ++ D Sbjct: 742 VRLQGDDAVISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEEGG 801 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + IS ER L EQFILTV+E GFGKR+S+Y++R + R G+G+ A + L Sbjct: 802 DAPISPERIAALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGK-RL 860 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 A FPV ++D ++LV+ G +IR V ++RI R+++GV IF TA+ ERVVSVER+ E+ Sbjct: 861 AAAFPVEESDDLLLVTSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSVERLAETG 920 Query: 902 IVDEAEST 909 DE E Sbjct: 921 GGDEPEVE 928 >gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str. Pm70] gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70] Length = 899 Score = 941 bits (2433), Expect = 0.0, Method: Composition-based stats. Identities = 413/919 (44%), Positives = 591/919 (64%), Gaps = 43/919 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 7 MTDLV---QDTMHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+ Sbjct: 64 HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM I GPDFPT A+I GR GI+ A Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALINGRKGIEEA 243 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + +E E IVV EIPYQVNKA ++EKIA+LV+EK++ I+ + Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAIT 303 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D SD+ G R+ I++KR A +V+LN LY T LQ F +N+VAL+ +P+ L +++A Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPE+A+R L+ + Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQ 423 Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472 +W + ++ + DG YL+EVQ +AIL+LRL +LT LG D+ Sbjct: 424 AWELGHVSQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L I E L IL S RL+ +I++EL ++++ + PRRT I D+ ED Sbjct: 484 ILDEYKKLLDVIGELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDL 543 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I +ED+VVT+SH GYVK PL+ Y AQRRGGKG+S ++EDF+ L + +TH ++L F Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G +Y KV++LP S ARG+ ++NIL L++ ERIT I+P E + +VV AT Sbjct: 604 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYE---EDKFVVMAT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ +N+I+L + G+ VRF +A Sbjct: 661 AGGIVKKIALTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENA 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA + D EEI Sbjct: 721 VRAM-GRAATGVRGIKLA-------------------------LTNDLSDDESAVDMEEI 754 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + +++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 755 SDENTNDALDLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKV 814 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V ++DQI+L++D GTL+R VNEI I R T+GV + T++ E +V Sbjct: 815 SERN--GKVVAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIRTSESETLV 872 Query: 893 SVERIRESEIVD-EAESTE 910 ++R+ + + D E++++E Sbjct: 873 GLQRVCDVDEEDIESDASE 891 >gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] Length = 888 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 409/905 (45%), Positives = 570/905 (62%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLNGDDKVVSLIIPRGDGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVATTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 Query: 906 AESTE 910 E Sbjct: 848 ILDGE 852 >gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola] gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola] Length = 885 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 >gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700] gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700] Length = 885 Score = 941 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 420/904 (46%), Positives = 585/904 (64%), Gaps = 39/904 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K Sbjct: 6 QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIAE V+EK+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPETA+REL+ R W + D++ Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 426 AGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S +RG+ ++NIL L + ERIT I+P E + +V+ AT G V++ L++F Sbjct: 606 LPQASRGSRGRPIVNILPLGENERITAILPVTAYE---EDKFVIMATAGGVVKKIALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GVR Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAM-GRLATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA + + E+++ + +++ NI Sbjct: 722 GIKLA-------------------------LTNDLSDDESAVEIEDVSDDNAEETLDLNI 756 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 757 DKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAAT 814 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI+L++D GTL+R V+E+ I R T+GV + T++DE VVS+ERI + + + Sbjct: 815 QVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERICDVDDEEG 874 Query: 906 AEST 909 + + Sbjct: 875 EQES 878 >gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37] gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37] Length = 911 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 474/895 (52%), Positives = 636/895 (71%), Gaps = 11/895 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S+SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K Y K A+ Sbjct: 22 SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEVMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL K Sbjct: 82 VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +A LL D+ KDTVDF+ NYDG +EP VL AR+PNVLVNG GIAVGMAT IP HNLGE Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A++DNPD+ + LME ++GPDFPTG ++LGR+G + AY GRGS++IR + +E Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAATTVE 261 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV++ IPYQVNKA M+E+IAE R+K+I IA ++DESDR G RVV+ELKR Sbjct: 262 EIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKRD 321 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR+T +Q+ F NM+ALNG KPE+ TL G L AF+ FRE+V+ RRT YLL Sbjct: 322 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGKPEQLTLRGFLSAFLDFREDVIARRTAYLL 381 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DEVV IR S + AR+ LM+R W A DI I LIDD Sbjct: 382 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALIDDP 441 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IK+ L+ILSSR R+ Sbjct: 442 THKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRERI 501 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII++E+ ++++E PRRT IV+ DM+DED I REDMVVTV+ GY+KR L+ +R Sbjct: 502 MGIIREEMTAIREEFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTAGGYIKRTALADFR 561 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA Sbjct: 562 AQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKA 621 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 622 IVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 681 Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + DE ++ C++E+D++L T G+ +RFP+ +RVF RNS GVRGI L GD+ Sbjct: 682 FEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDE 741 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H +A+ DER Y+K R + E D + + + +ER E+ Sbjct: 742 VVSMSVIRHFEAESDERASYLKM-----RRLMAGVTEDEGSDEDGNADAPLEQERYAEMS 796 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ +G GK +SS+D+ + R G+G+ A + S G +VA FPV DQI+ Sbjct: 797 AAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMR--GGDIVASFPVEQGDQIM 854 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 L + G IRVPV+ I SR+ GV +F+T +E VVSV I + +E E++ Sbjct: 855 LATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQ-ADEEPEAS 908 >gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 882 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 415/905 (45%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA++N+D ++ +IR +PNP A+ L+ R W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++V+D+ RRT I E D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E E +V AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIINLLPLEANERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLNGEDRVVSLIIPRGEGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERN--GNVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVDACDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 Query: 906 AESTE 910 E Sbjct: 848 VLDGE 852 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 146/430 (33%), Gaps = 38/430 (8%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428 + LL++ ++ + L + + D ++ +IR ARR + + +I+ Sbjct: 472 EKLLDEYKELLEQIAALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIE 531 Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483 DLI D Y L++ + + + D I L + + Sbjct: 532 DLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591 Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + + G + ++++ R T I+ E Sbjct: 592 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRH------ 645 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL V+ FS+ G Sbjct: 646 -VFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + ++ A G + ++LN +R+ +++ ++ T++G Sbjct: 703 VVRFPESQVRSMGRTATG---VRGINLNGEDRVVSLI------IPRGEGDILTVTENGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ + + + + + + I++ T G VR +S + Sbjct: 754 KRTGVAEYPTKSRATQGVISIKVSERNGNVVGAVQVDACDQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEVLDGEEGAAVEGDVADVAEDANDAP 872 Query: 775 LKNDSSVEGN 784 +++ E Sbjct: 873 EQDEEGDENA 882 >gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 925 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 463/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Sbjct: 35 PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA Sbjct: 95 HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +IR +IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+LKR A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 I LI ++ G LS+ Q AIL LRL+RLT +GRD I EL L I I E L Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 ++L +R RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+ Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693 Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +GK A++ + D ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRG Sbjct: 694 PSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD+VIS++ + + ++R Y++ + + + Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+ + + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +D DQ++LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + +E Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915 Query: 907 ESTE 910 + E Sbjct: 916 GTVE 919 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 98/256 (38%), Gaps = 37/256 (14%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G V+R + + GK D D + + ++S + VL + G Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKA 732 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646 + + Q+R + ++L G+ + ++ E++ + Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790 Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 +++ T +G +R ++ + NR G+ +++ + SV Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850 Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + ++L T + +R ++ IR AGRN+ GV ++A+G+QV+S A + Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909 Query: 745 DADYDERICYMKHMSA 760 D +E + A Sbjct: 910 GDDEEEGTVENQSGEA 925 >gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII] gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII] Length = 897 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 143/448 (31%), Gaps = 38/448 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NP+ + + + + + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++++ +R+ + + + +++ + I++ T G VR + Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V + D D + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ + + ++ + Sbjct: 869 PSDDVADEDTDAEDDTDAEDDTDVEDDN 896 >gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10] gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM 10] gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004] gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038] gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 891 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 >gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] Length = 892 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 405/900 (45%), Positives = 569/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 >gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9] gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9] Length = 859 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 399/918 (43%), Positives = 559/918 (60%), Gaps = 73/918 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+H+ + + VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDHLFAKET------IPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WN+ Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGS+ Sbjct: 55 HELSNDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSI 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL D+ K+TVDF PNYDGS EP+VL A+ PN+L+NG Sbjct: 115 DGDNAAAMRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD +A++ N D+ +D L++II PDFPT +I G G++ Sbjct: 175 GIAVGMATNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIYGLAGVREG 234 Query: 241 YATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y +GRG +VIR +H+E R+ +++ E+PYQVNKA +L KI ELVREK I I+DL Sbjct: 235 YRSGRGRVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDL 294 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIELKRG DV+LN LY+ T LQ F +NMVAL +P L IL+ Sbjct: 295 RDESDKSGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQPRLLNLKQILE 354 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R EVV RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P A+ ELM Sbjct: 355 EFLRHRREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMA 414 Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471 R W + +++++ ++ LSE Q +AILELRL RLTGL +D Sbjct: 415 RQWRSPLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQD 474 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + I + LDIL+ R+ II EL +K + RR+ I D+ ED Sbjct: 475 KIVAEYRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGDTRRSEIEPFGGDINLED 534 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GY+K P++ Y+AQRRGG+G+ +DEDF+ +LF+ +TH +L Sbjct: 535 LITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDFLLC 594 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV+ LP GS Q+RGK ++N+L L +GE+I I+P + YV A Sbjct: 595 FSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPVKGFS---DTEYVFMA 651 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ LS F +G IA+ LD D ++ + ++++L + G+ VRF + Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GVRG+ L QVI M + Sbjct: 712 DVRPM-GRNARGVRGMELGDAQQVIGMLV------------------------------- 739 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + +LT + G+GKRT D+R S R +G+ A D Sbjct: 740 ---------------------SNEETSQVLTATANGYGKRTPIGDYRKSRRGTQGVIAID 778 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N GALVAV V D+D+++L++ G LIR V+E+R RA +GV + + E++ Sbjct: 779 TGERN--GALVAVALVADSDELMLMTTGGVLIRTRVSEVRETGRAAQGVRLINLDAGEQL 836 Query: 892 VSVERIRESEIVDEAEST 909 VS+E+I ES+ D+ + T Sbjct: 837 VSLEKIAESDEPDDTDET 854 >gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4] gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 925 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 464/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Sbjct: 35 PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA Sbjct: 95 HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI Sbjct: 215 NIPPHNLGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +IR +IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+LKR A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 I LI ++ G LS+ Q AIL LRL+RLT +GRD I EL L I I E L Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 ++L +R RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+ Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693 Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +GK A++ D D ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRG Sbjct: 694 PSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD+VIS++ + + ++R Y++ + + + Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+ + + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +D DQ++LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + +E Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915 Query: 907 ESTE 910 + E Sbjct: 916 GTVE 919 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 37/256 (14%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G V+R + + GK D+D + + ++S + VL + G Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKA 732 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646 + + Q+R + ++L G+ + ++ E++ + Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790 Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 +++ T +G +R ++ + NR G+ +++ + SV Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850 Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + ++L T + +R ++ IR AGRN+ GV ++A+G+QV+S A + Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909 Query: 745 DADYDERICYMKHMSA 760 D +E + A Sbjct: 910 GDDEEEGTVENQSGEA 925 >gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 885 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 405/900 (45%), Positives = 567/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + T +DE VV ++R+ E E D Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 847 >gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2] Length = 894 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 390/921 (42%), Positives = 553/921 (60%), Gaps = 65/921 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ WN+ Sbjct: 3 QFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K AH +L+D+ K+TVDF PNYDGS +EP VL AR PN+LVNG GIAVGMATNI Sbjct: 123 TEIRLAKIAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+VD C+ ++ P+ ++ LMEI+ PDFPT +I G G++ Y TGRG +V+ Sbjct: 183 PPHNLNEIVDACLHLLKVPEATIEELMEIVPAPDFPTAGIIYGLEGVREGYRTGRGRVVM 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H E + + I+V EIPYQVNK +LE+IAELV EK+I I+ ++DESD+ G R Sbjct: 243 RAKCHFEDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L F+ R EVV Sbjct: 303 VVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPRLCNLKQLLDIFLEHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R HVL GLA+A+AN+DE + I+ SP P A+ LM ++W++S +++ Sbjct: 363 TRRTVYELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVRE 422 Query: 430 LIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 ++ ++S Y + +DG LSE Q + IL++RL RLTGL +D I Sbjct: 423 MLARAEESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKII 482 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDE 530 E + +I + LDIL+ R+ I+ +EL +++ E RR+ I L++ E Sbjct: 483 GEYREVMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTE 542 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I DMVVT+SH GY+K PL+ YRAQRRGG+G+ +D+D++ LFI +TH +L Sbjct: 543 DLITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWIL 602 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVV 649 FS G VY KVW +P GS +RGK ++N+ L GE+IT ++P E S + YV Sbjct: 603 CFSDRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVF 662 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 +T G V++ L +F ++G IA+ LD D ++ +D++L + G+ VRF Sbjct: 663 MSTALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFD 722 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +R GRN+ GVRG++L G VI+M + D D + Sbjct: 723 EDDVRPM-GRNARGVRGMALEPGQNVIAMLVSDRGDEARDVGEDSTRVS----------- 770 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +LT +E GFGKRT ++ R KG+ A Sbjct: 771 ------------------------------VLTATENGFGKRTPIGEYTRHGRGTKGMIA 800 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S+ N G +VA V + D+I+L++D+G L+R V EIR RAT+GV + + Sbjct: 801 IQQSERN--GKVVAATLVRETDEIMLITDRGVLVRTRVAEIREMGRATQGVTLIALDDGA 858 Query: 890 RVVSVERIRESEIVDEAESTE 910 ++ ++RI E++ + + + Sbjct: 859 KLSGLQRIVENDAQTDVAAGD 879 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 15/246 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R+ G V + + D++ + V+ F Sbjct: 655 FPADHYVFMSTALGTVKKTPLDEFSNPRKAG--IIAVGLDEGDYLIGAALTDGRHDVMLF 712 Query: 593 SSLGFVYKEKVWRLPIGSPQARG------KALINILSLNQGERITTIMPFPEDESSWNNL 646 S G + + ARG + N++++ +R ED + + Sbjct: 713 SDGGKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVSDRGDEARDVGEDSTRVS-- 770 Query: 647 YVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLG 703 V+ AT++G +R + ++ + R G IA++ ++++ + ++I+L T G Sbjct: 771 -VLTATENGFGKRTPIGEYTRHGRGTKGMIAIQQSERNGKVVAATLVRETDEIMLITDRG 829 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VR ++ IR GR + GV I+L G ++ + ++ DA D + Sbjct: 830 VLVRTRVAEIREM-GRATQGVTLIALDDGAKLSGLQRIVENDAQTDVAAGDDTANDSAGD 888 Query: 764 LISGDT 769 + + Sbjct: 889 AGTENA 894 >gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] Length = 905 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 459/900 (51%), Positives = 633/900 (70%), Gaps = 15/900 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M Sbjct: 1 MTDN-------NSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+ Sbjct: 54 HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C +DN DI++ L+E+++GPDFPT +ILG GIK+A Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI IRG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLR Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES++ G R+ IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ A Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE V+ RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P A++ELM R Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SW+A +I L+ L+DD + + +G +E Q +AILE+RL RLT + ++ + +L +L Sbjct: 414 SWDALNILPLVKLVDDKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI E L+IL SR RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVV Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KRVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K+++LP+ +PQ +G+ ++NIL L E IT IMP PE++ W+NL ++FAT GN+RR+ Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L DF +I +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GVRG+ LA+ D VISM ++ A +ER Y+ +R I+ E N Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +++ E E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGL 825 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V PV +D+++L+++ G LIR + +RI R T GV +F E+VVS I ES Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885 >gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+] gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+] Length = 891 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 >gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] Length = 897 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 144/448 (32%), Gaps = 38/448 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NP+ + + + + + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++++ +R+ + + + +++ + I++ T G VR + Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V + D D + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ + + ++ + + Sbjct: 869 PSDDVADEDTDAEDDTDAEDETDVEDDN 896 >gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758] gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758] Length = 897 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 143/448 (31%), Gaps = 38/448 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K H L L + +I NP+ + + + + + + Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490 ++ T + +++ L + R IKE I Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580 Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542 ++ +L + L P +R G + E + + Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640 Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + G VK+ L+ + R G + DE DL V+ FS Sbjct: 641 EEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG V + ++ A G + ++LN +R+ +++ + ++ T+ Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++++ +R+ + + + +++ + I++ T G VR + Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V + D D + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ + + ++ + Sbjct: 869 PSDDVADEDTDAEDDTDAEDDTDVEDDN 896 >gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] Length = 907 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 475/912 (52%), Positives = 615/912 (67%), Gaps = 14/912 (1%) Query: 1 MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 MT+H D E I VSI+ EM+ +YL YA++VI+ RAIPDLRDGLKPV Sbjct: 1 MTDH--PEDTETPSEIPERPVFHGPQVSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPV 58 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRR+LF M + G +K Y K AR G+ MGKYHPHG+A+IYDAL RMAQ +S+ L L++ Sbjct: 59 HRRVLFAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLD 118 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGD AA RYTE R+ K A FLL D+ KDTVDF+ NYDG +EP VL AR+P Sbjct: 119 GQGNFGSMDGDGAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFP 178 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GIAVGMAT IP HNLGEV+DG +A+I NPD+ +ALMEII PDFPTGA IL Sbjct: 179 NMLVNGAEGIAVGMATRIPPHNLGEVIDGTLALIANPDLSTEALMEIIPAPDFPTGATIL 238 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR+G + AY GRGSI++R + IE+ DR I++ EIPYQVNKA M+E IAE VREK+ Sbjct: 239 GRSGARKAYLEGRGSIIVRAKTRIEEIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKK 298 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I IA ++DESDR G RVVIELKR A+ADV+LNQLYR+T +Q F+ NM+ALNG +PE+ Sbjct: 299 IEGIAHVQDESDRIGVRVVIELKRDATADVVLNQLYRFTPMQISFACNMLALNGGRPEQL 358 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 L L F+ FREEVV RRT + L KAR+R+H+L GLA+AVAN+DEVV IR S +P Sbjct: 359 ALRDFLTHFITFREEVVARRTAFELRKARERSHILCGLAVAVANVDEVVATIRSSADPAE 418 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR LM R W A +I I LIDD ++ + DGT LSE+Q RAIL+LRL RLT +G + Sbjct: 419 ARERLMTRRWPAGEIIPFIKLIDDPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKE 478 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +EL L +I++ L+IL SR R++ II EL ++ PRRT IV+ DMEDED Sbjct: 479 ITDELLDLAGKIRDYLEILGSRDRIMAIISTELAEMRALFAVPRRTEIVDWSGDMEDEDL 538 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVT++ GY+KR PL+ +R+Q RGGKG + + +++D VT LF+ +THT +LFF Sbjct: 539 IEREDMVVTITSGGYIKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFF 598 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VYK K WRLP+ QA+GKA++NIL + QG I +MP E W +L +VFAT Sbjct: 599 TTDGMVYKLKTWRLPLAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFAT 658 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G+VR+N LSDF + R+GKIAMKL +++ + +D++L T G+ +RFP + Sbjct: 659 SDGDVRQNDLSDFTNVMRNGKIAMKLPEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTE 718 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IRVF R S GVRGI L D+V+SMAI+ H +AD ER Y+K + +TE Sbjct: 719 IRVFKSRGSTGVRGIRLGAEDRVVSMAIIRHFEADPAEREAYLKQRRLMAGAVDDETEAD 778 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + G +S ER E+ E ILT++ G GK TSS+D+ + R G G++A D Sbjct: 779 EDEV--AVAAGQLSTERYAEMSAAEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMD- 835 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LVA FPV +DQI+L + G IRVPV +I SR+ GV +F+T DE+VV Sbjct: 836 -GAMRGGPLVASFPVEMSDQIMLATSTGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVV 894 Query: 893 SVERIRESEIVD 904 SV R+ E + Sbjct: 895 SVARVAEQGDDE 906 >gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 925 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 463/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Sbjct: 35 PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA Sbjct: 95 HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +IR +IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+LKR A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 I LI ++ G LS+ Q AIL LRL+RLT +GRD I EL L I I E L Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 ++L +R RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+ Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693 Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +GK A++ + D ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRG Sbjct: 694 PSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD+VIS++ + + ++R Y++ + + + Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+ + + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +D DQ++LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + +E Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915 Query: 907 ESTE 910 + E Sbjct: 916 GTVE 919 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 37/256 (14%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G V+R + + GK D+D + + ++S + VL + G Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKA 732 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646 + + Q+R + ++L G+ + ++ E++ + Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790 Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 +++ T +G +R ++ + NR G+ +++ + SV Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850 Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + ++L T + +R ++ IR AGRN+ GV ++A+G+QV+S A + Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909 Query: 745 DADYDERICYMKHMSA 760 D +E + A Sbjct: 910 GDDEEEGTVENQSGEA 925 >gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica Y11] Length = 885 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 404/900 (44%), Positives = 566/900 (62%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMV L+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVGLSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + T +DE VV ++R+ E E D Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 847 >gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] Length = 892 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 569/905 (62%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 Query: 906 AESTE 910 E Sbjct: 848 ILDGE 852 >gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814] gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814] Length = 981 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 515/911 (56%), Positives = 675/911 (74%), Gaps = 16/911 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E G++ ++I+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++K Y Sbjct: 40 EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ ++YDAL RMAQ++S+ L L++GQGNFGS+DGDP AA RYTE Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 +L+K A+ LL D+ KDTV+F+ NYDGS +EP+VL AR+PN+LVNGGGGIAVGMATNIP Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D +A+I++P+ID +AL+EI+ GPDFPTGA+I+GR G ++ TGRGS+++R Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRS 279 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE+ RE +V TEIPYQVNKA+M+EKIAELVR+KRI IAD+RDESDR G RVV+ Sbjct: 280 KSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVV 339 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR AS +V+LNQL+RYT LQ+ F +NM+ALN +PE +L IL+AF+ FREEVV RR Sbjct: 340 EVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARR 399 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ LNKAR RAH+LVGLA+AVAN+DEV++IIR SP+P TAR +LM R+W A D+ LI+ Sbjct: 400 TKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLIN 459 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LI D G + LSE Q RAIL+LRL RLTGLGRD+I +E L I + LDILS Sbjct: 460 LIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILS 519 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR R++ II +EL V++E PRR++ +E LDM+DE I +EDMVV +H GY KR Sbjct: 520 SRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGGYAKRTA 579 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS+YR Q RGG+GRSG+ ++ED VT F+ +THT VLFFSS G VYK KVWR+P+G+PQ Sbjct: 580 LSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ 639 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RGKAL+N+L L++GE IT++MP PEDE N+ ++FAT+ G VRRNKLSDF Q+NR+G Sbjct: 640 SRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNG 699 Query: 673 KIAMKLDS------RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 KIAMKLD D I+ V+ C+ ++D++LTT LGQC+RF + +RVF GR S GVRG Sbjct: 700 KIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRG 759 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI------TSLKNDSS 780 I LA GD+VISM ++ H D E Y+KH SA RR + + + +D Sbjct: 760 IRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEG 819 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 E +S ER EL E+F+LT++E G GKR S+YD+R++ R GKG+ A + N Sbjct: 820 DEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKL---NAGRR 876 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L A FP+ D D+I+LV+D G LIR P +IRIA RAT+GV + T+ +ERVVSVER+ E Sbjct: 877 LAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLAEQ 936 Query: 901 EIV-DEAESTE 910 E DE E+ E Sbjct: 937 ESDVDENETEE 947 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D V+ + LG R + R G+ +GV ++ + + S Sbjct: 724 SPDDDVMLTTALGQCIRFKVEDVRV--FTGRTSTGVRGIRLANGDEVISMLVLRHMDITS 781 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW---NNLYVVF 650 Y + + + G I+++S + + + +++ Sbjct: 782 PEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEGDEAALSPERIAELGAAEEFLLT 841 Query: 651 ATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 T+ G +R D+ R G IA KL++ + + ++I+L T GQ +R Sbjct: 842 ITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIEDGDEIMLVTDAGQLIRT 901 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P IR AGR + GV+ + + ++V+S+ + ++D DE + + Sbjct: 902 PAKQIR-IAGRATQGVKVLRTSGEERVVSVERLAEQESDVDENETEENVDGSAEIVDVAI 960 Query: 769 TEEITSLKNDSSVEGNISEER 789 N + + + ++ Sbjct: 961 DGAPEGEPNSETNDSSNDQQE 981 >gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34] gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus metallidurans CH34] Length = 897 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 377/910 (41%), Positives = 558/910 (61%), Gaps = 59/910 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NPD +D L+E++ PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P L +L AF++ R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 482 VQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KV+ +P GS +RG+ ++N+ L GE+I I+P + + ++ AT Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFD---AEHFIFMATA 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L+DF ++G IA+ LD D ++ ++D++L + G+ VRF + + Sbjct: 659 RGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L +G VI+M + A+ + + Sbjct: 719 RPM-GRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGS----------- 766 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 767 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 800 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + + ++ Sbjct: 801 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 858 Query: 894 VERIRESEIV 903 ++RI ES+ Sbjct: 859 LQRIVESDAD 868 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 13/223 (5%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + + G VK+ L+ + R+ G + + DF+ + V+ FS Sbjct: 650 EHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLD--EGDFLIGAAVTDGQHDVMLFSDA 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALIN-------ILSLNQGERITTIMPFPEDESSWNNLYV 648 G + + QARG +N I L + V Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSV 767 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ +++ + E++I+L T G Sbjct: 768 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVL 827 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 +R ++ IR GR + GV I++ +G ++ + ++ +DAD Sbjct: 828 IRTRVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADN 869 >gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] Length = 849 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 398/906 (43%), Positives = 571/906 (63%), Gaps = 67/906 (7%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +++ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN Sbjct: 2 EQQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGD AA Sbjct: 62 RAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K AH LL DL K+TVDF PNYDGS EP+V AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HN+ EVVD C+A++ NPD+D++ L+E++ PDFPT I G G+K Y TGRG + Sbjct: 182 NIPPHNMTEVVDACLALLKNPDMDIEQLIELVPAPDFPTAGFIYGLAGVKEGYRTGRGRV 241 Query: 249 VIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 V+R +H E GDR+ I++ E+PYQVNKA +L KI E+VREKRI ++++RDESD+ G Sbjct: 242 VMRARTHFEDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R VIELKRG +ADVILNQLY+ T +Q F +NMVA+ +P+ L +++AF+ R E Sbjct: 302 MRAVIELKRGENADVILNQLYKDTQMQDSFGINMVAIVDGQPKLCNLKDVIEAFLRHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+RELM R W +S + Sbjct: 362 VVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLV 421 Query: 428 KDLIDLIDD--------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 +D++ +D+ + + +LS+ Q +AILELRL RLTGL +D I E Sbjct: 422 EDMLSRVDEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I + LDIL+ +R+ II EL++++ + RR+ IV DM ED I ED+V Sbjct: 482 VMDKITDLLDILAKPARVTQIIGDELITIRSQFGDKRRSEIVTHTQDMSMEDLIAPEDVV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY+K L YRAQ+RGG+G+ +++DF+ +LFI +TH +L FS+ G VY Sbjct: 542 VTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P G+ +RGK ++N+L L GE+I I+P + + ++ FAT G V++ Sbjct: 602 WLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPVKQFA---EDQFIFFATSEGTVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LSDF ++G IA+ LD D ++ V ++D++L + G+ VRF +R GR Sbjct: 659 TPLSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++LAKG +VI++ + + + Sbjct: 718 TARGVRGMNLAKGGKVIALLVAENEE---------------------------------- 743 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 Q +LT +E G+GKRT ++ R +G+ A S+ N G Sbjct: 744 ------------------QSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERN--G 783 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +VA V D+I+L+ G LIR VNEIR RAT+GV + + + E++ + RI E Sbjct: 784 KVVAATLVKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGEKLAGLSRIAE 843 Query: 900 SEIVDE 905 +E E Sbjct: 844 TEEESE 849 >gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] Length = 881 Score = 939 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 396/921 (42%), Positives = 572/921 (62%), Gaps = 76/921 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +M WN+ Sbjct: 2 DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +VKCAR+ GEVMGKYHPHG+A+IYD L RMAQD+SLR L++GQGNFGS+DGD AA R Sbjct: 62 PFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL K ++ LL D+ K+TVDF PNYDG +EP VL R PN+LVNG GIAVGMATN Sbjct: 122 YTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV++G + ++ N +D L+E++ PDFPTG +I G +G+++ Y TGRG +V Sbjct: 182 IPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ R I+V E+PYQVNK A+LE+IAELVR+K++ I+DLRDESD+ G Sbjct: 242 MRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++S ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ +++ Y I SDG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I + LDIL+ +R+ II EL + K++ RR+ I D+ Sbjct: 482 VNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLAT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY+K P+S YRAQ+RGG+G+ + +D+D++ LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G +Y KVW +P GS +RGK ++N+ L GE+IT I+P + S ++ YV Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYV 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L + QVI++ + + Sbjct: 722 DENDVRPM-GRTARGVRGMNLEETQQVIALLVAEN------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++Q +LT +E GFGKRT ++ R KG+ Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V+ D+I+L++ G LIR V+EIR RAT+GV + + Sbjct: 789 AIQTSERN--GKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVEDG 846 Query: 889 ERVVSVERIRESEIVDEAEST 909 ++ ++R+ ES++ D E Sbjct: 847 TKLSGLQRVVESDVEDAVEGD 867 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 97/237 (40%), Gaps = 14/237 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PLS + R+ G + + DF+ + V+ F Sbjct: 655 FPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG +N L + +++ ++ V+ AT Sbjct: 713 SDGGKAVRFDENDVRPMGRTARGVRGMN---LEETQQVIALLVAEN-----EQQSVLTAT 764 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ ++I+L T G +R Sbjct: 765 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTR 824 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +S IR GR + GV I++ G ++ + V+ +D + + ++ Sbjct: 825 VSEIREM-GRATQGVTLIAVEDGTKLSGLQRVVESDVEDAVEGDNAEGAGSEAPAAG 880 >gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] Length = 873 Score = 939 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 393/922 (42%), Positives = 556/922 (60%), Gaps = 76/922 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L DL K TVDF PNYDGS +EP+V+ R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E VD C+ ++ NP+ +D LMEII PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGIIYGLNGVREGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E R+ I+V EIPYQVNK +LE++AELV EK++ I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPKLCNLRDLVEVFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + II+ SP P A++ LM +SW++S ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y + +DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED 529 E + I + LDILS R+ II +EL++VK E RR+ I + ++ Sbjct: 482 IGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQELGT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GYVK PL+ YRAQRRGG+G+ +D+D++ LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWM 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G VY KVW +P G ARGK ++N+ L E+IT ++P E + ++ Y+ Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDHYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GRN+ GVRG++L G VI+M + Sbjct: 722 DEDDVRPM-GRNARGVRGMALEPGQNVIAMLVAED------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 756 ---------------------------ESQSVLTATENGYGKRTSITEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ N G +VA V D+I+L++D+G L+R V+EIR RAT+GV + S Sbjct: 789 AIQQTERN--GRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRATQGVTLISLDDG 846 Query: 889 ERVVSVERIRESEIVDEAESTE 910 ++ ++RI E++ +A TE Sbjct: 847 SQLGGLQRIVENDAGSDAGDTE 868 >gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] Length = 894 Score = 938 bits (2425), Expect = 0.0, Method: Composition-based stats. Identities = 454/896 (50%), Positives = 636/896 (70%), Gaps = 8/896 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ I Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ R Sbjct: 306 ELKKDVEAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLLNKARD+AH+L+GL IAV+N+DE++RII+ S +P TA++E+M R WNA +I L+ Sbjct: 366 TVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLVK 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+DD + + G +EVQ +A+LE+RL RLT + ++ + +L +L EI E L+IL Sbjct: 426 LVDDKAM-LNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILG 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVP Sbjct: 485 SRERLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRVP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I +G Sbjct: 605 GKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LA Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGD 724 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM ++ + ++R Y+ QR I+ N + +++ + E Sbjct: 725 DSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKS-----FNPEELGVSLTLDSILE 779 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+ Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++L+++ G LIR + +RI R T GV++F E+VVSV I ++ +E Sbjct: 838 LMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSASEEDNE 893 >gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] Length = 901 Score = 938 bits (2425), Expect = 0.0, Method: Composition-based stats. Identities = 473/882 (53%), Positives = 620/882 (70%), Gaps = 8/882 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 16 VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 76 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+I++PD+ + L+E I GPDFPTGA++LGR+G + AY GRGS++IR + +E+ Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALMLGRSGARKAYLEGRGSVIIRAKTRVEE 255 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IVV EIPYQVNKAAM+EKIAE VREK+I +A ++DESDR G RVV+ELKR A Sbjct: 256 IRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRDA 315 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT +LL Sbjct: 316 TPEVVLNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAHLLR 375 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV N+DE+V IR S + AR +LM R W A I + I LIDD + Sbjct: 376 KARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDDPT 435 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +T DGT LSE Q RAILELRL RLT +G ++ +EL L +IK+ L+ILSSR R++ Sbjct: 436 HTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRERIM 495 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 GII EL V+D PRRT IV+ DMEDED I REDMVVTV+ G++KR PL+ +RA Sbjct: 496 GIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGWIKRTPLADFRA 555 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP +GKA+ Sbjct: 556 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 615 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP + W NL VVFAT G+VRRN+LSDF + R+GKIAMKL Sbjct: 616 VNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNVRRNGKIAMKL 675 Query: 679 DSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++++V C++++D++L T G+ +RF + +RVF R S GVRGI L D V+ Sbjct: 676 PEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRGIRLTGEDSVV 735 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM+++ H+ ++R Y+K RR ++G T++ + D+ + N S E E+ Sbjct: 736 SMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSAA 791 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILT++ G GK +SS+D+ + R G G+ A D K G +VA FPV +DQI+L Sbjct: 792 ENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGEIVASFPVELDDQIMLA 849 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + KG IRVPV+ I SR+ GV +F+T K E VVSV I Sbjct: 850 TSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIA 891 >gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] Length = 907 Score = 938 bits (2425), Expect = 0.0, Method: Composition-based stats. Identities = 411/912 (45%), Positives = 579/912 (63%), Gaps = 49/912 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 EIAREILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++S+R +L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH LL DL KDTVD+ NYDG+ + P VL + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMSRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ E++DGC+A+ID+ + +D LM I GPDFPTG +I GR GI AY TGRG I + Sbjct: 183 PPHNMREIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGIINGRAGILEAYRTGRGRIYV 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE R+ I+VTE+PYQVNKA ++EKIAELV++KRI IA+LRDESD++G R Sbjct: 243 RARHTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+KRG S DV++N L+ +T LQ++F +NMVAL+ +P+ L IL+AFV R EVV Sbjct: 303 VVIEVKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQPKILNLKEILEAFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDR H+L GLA+A++N+DEV+ +I+ SP+ A+ +L+ R+W + D Sbjct: 363 TRRTLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTD 422 Query: 430 LIDLIDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 +++ +S LS Q +AILELRL RLTGL + + +E S Sbjct: 423 MLERAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLS 482 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + I E +IL+S RLL +I++EL +++D+ R+T I LD+ ED I EDMV Sbjct: 483 ILKRIAELNEILASPERLLDVIREELQAIRDQYGDERKTEIQASHLDLTIEDLINEEDMV 542 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+S GY K PLS Y+AQRRGG+G+S M+DED + L + STH +VL FS+ G VY Sbjct: 543 VTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRGKVY 602 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P S +RGK LIN+L L++GE I I+P E + Y+ FAT G V+R Sbjct: 603 WLKVYEMPNASRGSRGKPLINLLPLDEGEAINAILPVREYR---EDSYIFFATAKGTVKR 659 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L F + G IA+ L+ D ++ + + +L + G+ +RF +R GR Sbjct: 660 TSLEQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAM-GR 718 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ L G +VIS+ I SL D+ Sbjct: 719 TARGVRGMRLQGGAEVISLII-------------------------------PQSLTIDA 747 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + E + + + +ILT SE G+GKRT +F + R G+G+ A S+ N G Sbjct: 748 ETDDDAEERPVETVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRN--G 805 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ALVA V D+D+++L++DKGTL+R V E+ ++SR T+GV + T + E +V+ R+ E Sbjct: 806 ALVAAIQVRDSDEMMLITDKGTLVRTRVGEVSVSSRNTQGVTLIRTGEGEHLVATVRVDE 865 Query: 900 SE-IVDEAESTE 910 + + D+A E Sbjct: 866 PDAVEDDALDAE 877 Score = 62.9 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 95/269 (35%), Gaps = 19/269 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VKR L + R G + + ++D + I S + + Sbjct: 642 YREDSYIFFATAKGTVKRTSLEQFSRPRSVG--LIAIDLEEDDRLVGAAITSGNDHAMLL 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------ 646 SS G + + + ARG + + + + D + ++ Sbjct: 700 SSNGKAIRFEEGNVRAMGRTARGVRGMRLQGGAEVISLIIPQSLTIDAETDDDAEERPVE 759 Query: 647 -------YVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETC-TQENDI 696 Y++ A+++G +R +L +F G IAM+ R+ L +++ Sbjct: 760 TVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRNGALVAAIQVRDSDEM 819 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L T G VR + + + RN+ GV I +G+ +++ V DA D+ + Sbjct: 820 MLITDKGTLVRTRVGEV-SVSSRNTQGVTLIRTGEGEHLVATVRVDEPDAVEDDALDAEA 878 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785 S + + T + Sbjct: 879 LDSEEGAATAEATPTPDDGAPSDEAPQDD 907 >gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5] gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5] Length = 905 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 455/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 243 MRGRAEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFTKLQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ + N + +++ Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----VFNPEELGVSLTAPA 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] Length = 863 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 412/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K++ I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF + +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K V S+ +V Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 741 -----------NGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13] gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13] Length = 855 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 402/909 (44%), Positives = 565/909 (62%), Gaps = 67/909 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +N+ Sbjct: 2 NQFAKETLPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A YD + RMAQD+SLR +L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +H LL D+ KDTVDF PNYDGS EP+++ R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSKISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ CV ++DNP+I +D L+ I GPDFPT +I G +GIK Y TGRG +V Sbjct: 182 IPPHNLTEVINACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+T RE I++ E+PYQVNK +LEKIAELV +K++ I+DLRDESD+ G Sbjct: 242 MRARTHFEETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG DV+LN LY+ T LQ F +NMVAL +P+ L +L AF+ R EV Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR+R H+L GLA+A+ N+DE+++II+ SP+P A+ ELMQR W +S + Sbjct: 362 ITRRTVFELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVS 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++ D + Y + LS++Q + IL++RL RLTGL +D I NE + Sbjct: 422 SMLKQGDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEI 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + +DIL+ R+ IIK EL +K+ RR+ IVE D+ ED I +DMVV Sbjct: 482 MDVIADLIDILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDLIAPQDMVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+K L YRAQ+RGG+G+ +D+DF+ +F+ ++H ++L FSS G VY Sbjct: 542 TLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RGK ++N+ L GE+I I+ E +N Y+ AT G V++ Sbjct: 602 LKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFV---DNEYIFMATAKGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LSDF +SG IA+KLD+ D ++ ENDI+L + G+ V F S +R GRN Sbjct: 659 PLSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSM-GRN 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G +V+S+ I + Sbjct: 718 ARGVRGMKLTDGGEVLSLLIAEN------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + Q ++ +E G+GKRT +FR S R +G++A VS N G Sbjct: 741 ---------------EAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRN--GQ 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V D+D+++L++ G LIR V+EIR RAT+GV + + + DE++ +E++ ES Sbjct: 784 VVGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEKVAES 843 Query: 901 EIVDEAEST 909 E DE + Sbjct: 844 EHHDEEDGD 852 >gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] Length = 906 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 458/891 (51%), Positives = 637/891 (71%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 3 DQNFSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ +V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ Sbjct: 303 IFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S NP A++ELM RSW+A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I Sbjct: 602 NPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ +R I+ E N + ++ + Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEELGVTLTADS 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 126/352 (35%), Gaps = 18/352 (5%) Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 ++ + + S ++ + + LS Q + + + L ++ Sbjct: 566 EDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGK---GRPMVNILPLKENEHI 622 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 + L E ++ + G I++ L ++ + + I D + Sbjct: 623 TNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPC 682 Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +ED + + + G R P+ R + R D V + + + + Sbjct: 683 KEDEHILLATKAGKALRFPVESLR----------VIKSRTSDGVRGMKLAKEDSVISMTV 732 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G ++ + P + + N E T+ E + + +++ T+ Sbjct: 733 LKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTLTADSILEMANSEEFILTVTE 792 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R+ + +R G + +D D+ + V +++++L T G+ +R + Sbjct: 793 NGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRCKL 852 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 ++R GRN+ GV L G++V+S++++ ++ A+ Sbjct: 853 ESVR-ITGRNTSGVILFKLDDGEKVVSVSLIAETSESEEDSELEEDLEQAEE 903 >gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703] gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703] Length = 878 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 406/903 (44%), Positives = 572/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +I++EL ++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E L V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEQNERITAILPVREYE---EGLNVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ + Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ D+ +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERN--GNVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA++ERVV ++R+ E DE Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + A G IN+ ++ ++ T++G Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTENGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++D+ +R+ K + + + + + I++ T G VR +S + Sbjct: 754 KRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ ++V+ + V D + + + + Sbjct: 813 SIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDGEELAEDMPDEPDNEDD 872 Query: 775 LKNDSS 780 D Sbjct: 873 APVDDE 878 >gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083] gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083] Length = 920 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 470/919 (51%), Positives = 619/919 (67%), Gaps = 15/919 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + E E S+SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPETPENEGESQPVVSTYTGPSISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHEAGNTHEKSYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD AA RYTE R+ K A FLL D+ K+TVDF+ NYDG +EP VL ARYPN Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVV +A+I+NPD+ + L+ + GPDFPTG ++LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVTATLALIENPDLTTEELIAYVPGPDFPTGGIMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS+VIR + +E+ DR IV+ EIPYQVNK+ M+EKIAE VREK+I Sbjct: 241 RSGARKAYLEGRGSVVIRSKTRVEEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+TS+Q+ F NM+ALNG +PE T Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTSMQTYFGCNMLALNGGRPETLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV N+DEVV IR S + A Sbjct: 361 LRRFLTSFIDFREDVVARRTAYELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +L R W A +I + I+LIDD ++ + DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 REKLKTRRWPAIEIAEYINLIDDPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +I+E L+IL SR R++ II+ EL V+++ PRRT IV+ DMEDED I Sbjct: 481 TDELKLLAGKIREYLEILGSRDRIMAIIRDELSEVREKFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVT++ GY+KR PL +RAQRRGGKG +G+ +DED +T LF+ +THT +LFF+ Sbjct: 541 EREDMVVTITSGGYIKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G YK K WRLP+G A+GKA++NIL + G I IMP DE W++L VVFAT Sbjct: 601 TDGMSYKLKTWRLPLGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRNKLSDF + R+GKIAMK ++ V + ++D++L T G+ +RF Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRA 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R S GVRGI L D V+SM+++ H +A DER Y+K A L + Sbjct: 721 TDVRVFNSRASTGVRGIKLQGKDTVVSMSVIRHFEATSDERAAYLKMRRAMAGLA---DD 777 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + I++ER E+ E ILT++ G GK +SS+D+ + R G G+ A Sbjct: 778 AELPDEEEGDANSQITQERYAEMSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAM 837 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D S G +VA FPV +DQI+L + KG IRVPV+ I SR+ GV +F+T K+E Sbjct: 838 DKSMR--GGEVVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNES 895 Query: 891 VVSVERIRESEIVDEAEST 909 VVSV I + + E Sbjct: 896 VVSVAWIADQGDDELGEGN 914 >gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 885 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 408/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ SW ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847 >gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans] Length = 887 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 417/905 (46%), Positives = 581/905 (64%), Gaps = 39/905 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIA+ V++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ W + D++ Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++NIL LN+ ERIT I+P E + +VV T G V++ L++F Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMTTAGGIVKKIALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVR Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA + + E+++ + +++ NI Sbjct: 722 GIKLA-------------------------LTNDLNDDESAVEIEDVSDDNAEETLDLNI 756 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + IL ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 757 DKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +NDQI+L++D GTL+R V+E+ I R T+GV + T++ E VVS+ERI E + + Sbjct: 815 QVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874 Query: 906 AESTE 910 TE Sbjct: 875 ENPTE 879 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 99/252 (39%), Gaps = 25/252 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + VV + G VK++ L+ + R G + +RDED + + I ++ F Sbjct: 639 YEEDKFVVMTTAGGIVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635 SS G V + + + AL N L+ ++ + Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNI 756 Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690 NN ++ AT++G +R KL ++ +R+ K + + ++++ Sbjct: 757 DKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + + I+L T G VR +S + GRN+ GVR I ++ + V+S+ + D + E Sbjct: 817 EENDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875 Query: 751 RICYMKHMSAQR 762 + + Sbjct: 876 NPTESAVENNEE 887 >gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] Length = 898 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 412/910 (45%), Positives = 583/910 (64%), Gaps = 69/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Sbjct: 35 EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKP 94 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RY Sbjct: 95 YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 154 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 155 TEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 214 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I Sbjct: 215 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 274 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + +E RE I+V+EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R Sbjct: 275 RASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMR 334 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV Sbjct: 335 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 394 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ Sbjct: 395 TRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARSWDLGNVAA 454 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D + +G +L+E Q +AIL+LRL +LTGL + + E L Sbjct: 455 MLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLL 514 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 ++I+ L IL S RL+ +I++EL ++D + PRRT I E D+ ED I +ED+VVT Sbjct: 515 VQIEALLFILRSPERLMEVIREELEIIRDTYNDPRRTEITENTADINIEDLINQEDVVVT 574 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PLS Y AQRRGGKG+S +DEDF+ L + +TH ++L FSS G +Y Sbjct: 575 LSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTHDTILCFSSRGRLYWM 634 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP S ARG+ ++N+L L Q ERIT I+P E E +N V AT G V++ Sbjct: 635 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN---VFMATASGTVKKTP 691 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + Sbjct: 692 LQEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFAEDAVRPM-GRTA 750 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L D+V+S+ I Sbjct: 751 TGVRGIKLMDNDKVVSLII----------------------------------------- 769 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G + Sbjct: 770 ------------PRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GNV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++ DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E++ Sbjct: 816 VGAIQVDETDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETD 875 Query: 902 IVDEA-ESTE 910 + A E+TE Sbjct: 876 DDENAIENTE 885 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 68/418 (16%), Positives = 143/418 (34%), Gaps = 35/418 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + +L + + E + IIR + N RR + + Sbjct: 502 EHEKLLEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYN--DPRRTEITENTAD 559 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y LS+ + + + D I L + Sbjct: 560 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTH 619 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 620 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN-- 677 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ PL + R G + DE DL V+ FS Sbjct: 678 -----VFMATASGTVKKTPLQEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 730 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + + A G I ++ ++ +++ T+ Sbjct: 731 AQGKVVRFAEDAVRPMGRTATGVRGIKLMDNDK---------VVSLIIPRGEGHILTVTE 781 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + +++ +R+ + + + + + + + I++ T G VR + Sbjct: 782 NGYGKRTEEAEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITDAGTLVRTRV 841 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S + GRN+ GV I A+ ++V+ + V D D + ++ + + Sbjct: 842 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETDDDENAIENTEENGVDDANIDDQE 898 >gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] Length = 889 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 387/917 (42%), Positives = 564/917 (61%), Gaps = 66/917 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421 Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L + QVI+M + A + Sbjct: 719 RPM-GRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSVAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852 Query: 894 VERIRESEIVDEAESTE 910 ++R+ ES+ + AES E Sbjct: 853 LQRVMESDA-EGAESVE 868 Score = 75.6 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---- 648 S G + + QARG +N L + +++ ++ P + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEENQQVIAMLVAPAETAGEGAQSVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV IS+ +G+++ + V+ +DA+ E + A Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGAESVEGADAADAAPDAD 880 Query: 766 SGDTEEITS 774 + + + Sbjct: 881 AQPDDSSET 889 >gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2] gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2] Length = 898 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 387/924 (41%), Positives = 561/924 (60%), Gaps = 69/924 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS QEP+VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ ++ Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +G LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ R+ II +EL +VK E RR+ + D+ Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P E+ S + + Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+++ + VI+M + D + Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 Q +LT +E G+GKRT+ ++ R KG+ Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + + Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855 Query: 888 DERVVSVERIRESEIVDEA-ESTE 910 +++ ++RI E++ D A E E Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L+ + R+ G V + + D++ + V+ F Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648 S G + + ARG +N + + + + ++ D+ + N + V Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR ++ IR GR + GV I+L +G ++I + ++ DA+ + S Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDEGAKLIGLQRIVENDANDNAGEDGEADDSGSAGAE 889 Query: 766 SGDTEEITS 774 S Sbjct: 890 GAAESGDAS 898 >gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] Length = 918 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 470/920 (51%), Positives = 636/920 (69%), Gaps = 18/920 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + EE +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPETPENTEEMPPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDALARMAQD+S+ L L++G Sbjct: 61 RRILYAMYEAGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A ++L D+ KDTVDF+ NYDG +EP VL +R+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D C+ +I+NPD+ + L+E I GPDFPTG ++LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 RTG + AY GRGS++ R +H E+ DR I++TEIPYQVNK+ M+++IAE R+K+I Sbjct: 241 RTGARKAYLEGRGSVITRAKTHTEEIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 I+ ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE T Sbjct: 301 EGISHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV IR S + +A Sbjct: 361 LRRFLTSFLDFREDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LM R+W A++I I LIDD ++ +DGT LSE+Q RAILELRL RLT +G ++ Sbjct: 421 RAALMTRAWPAAEILPFILLIDDPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE L IL+SR R++ II EL K PRRT+IV+ DMEDED I Sbjct: 481 TDELEELAGKIKEYLAILASRERIMQIITDELAECKTLFAVPRRTQIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVTV+ GY+KR L +RAQ+RGGKG SG ++++D VT LF+ +THT +LFF+ Sbjct: 541 ESQDMVVTVTETGYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP GS ++GKA++NIL + G I IMP DE W++L +VFAT Sbjct: 601 TDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRNKLSDF ++ R+GKIAMK + ++++ C+ ++D++L T G+ +RF Sbjct: 661 AGTVRRNKLSDFTKVMRNGKIAMKFEGENEGVQLINARICSDDDDVMLVTNSGRAIRFAS 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R S+GVRGI L D+++SM+++ H +A+ DER Y+K A L Sbjct: 721 TDVRVFNSRASLGVRGIRLKGDDKIVSMSVIRHFEAESDERAAYLKMRRAMAGLA----- 775 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + ++++ GNI++ER E+ E ILT++ G GK +SS+D+ + R G G+ A Sbjct: 776 DDAEIEDEDVTAGNITQERYAEMSASENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAM 835 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K G +VA FPV +DQI+L + KG IRVPV I SR+ GV +F+T K+E Sbjct: 836 D--KAMRGGEIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEI 893 Query: 891 VVSVERIRESEIVDEAESTE 910 VVSV I + ++ ++ E Sbjct: 894 VVSVAYIADR-ADEDGDADE 912 >gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568] gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568] Length = 882 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 407/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LSEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ + Sbjct: 723 GINLGEGDSVISLIVPRGEGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847 Query: 906 AESTE 910 +S E Sbjct: 848 LDSLE 852 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 89/249 (35%), Gaps = 15/249 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L+ + R G + DE DL V+ FS+ G V Sbjct: 646 VFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + ++ A G IN+ + ++ T++G + Sbjct: 704 VRFPETQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGYGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++++ +R+ + + + +++ + I++ T G VR +S + Sbjct: 755 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVDTTDQIMMITDAGTLVRTRVSEV-S 813 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A+ + V+ + V D + A+ D + + Sbjct: 814 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGAEVAEEDAAPLDEGDDSEA 873 Query: 776 KNDSSVEGN 784 +D+ + Sbjct: 874 PDDAEEDNA 882 >gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] Length = 924 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 474/893 (53%), Positives = 630/893 (70%), Gaps = 8/893 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G K Y K AR Sbjct: 25 QVSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARA 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PSASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++D +A+I NPD+ + L++ + PDFPTG +ILGRTG + AY GRGS+VIR + +E Sbjct: 205 IIDATLALITNPDLTSEELIQYVPAPDFPTGGIILGRTGARKAYIEGRGSVVIRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNKA+++EKIAE VR+KRI I+ ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L +F+ FREEVV RRT + L Sbjct: 325 ATAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFLDFREEVVARRTAFEL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DE+V IR S +P AR +LM R W A+DI + I LIDD Sbjct: 385 RKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ DGT LSE Q RAILELRL RLT LG ++ +EL L I+E L+IL+SR R+ Sbjct: 445 THRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL VKD+ PRR+ I++ DMEDED I EDMVVTV+ GY+KR PL+ +R Sbjct: 505 MGIITDELQEVKDKFAVPRRSEIIDWSGDMEDEDLIESEDMVVTVTATGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ +++D VT+LF+ +THT +LFF++ G VYK K WRLP G A+GKA Sbjct: 565 AQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLPQGGRTAKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +INIL + QG + +MP DE W +L +VFAT G+VRRN LSDF + R+GKIAMK Sbjct: 625 IINILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTNVMRNGKIAMK 684 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C++++D++L T G+ +RF + +RVF GR+S GVRGI LA+G V+S Sbjct: 685 LPEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGIRLAEGRSVVS 744 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA++ H +A ++R Y+K RR + G ++++ ++ + + E+ +E++ E Sbjct: 745 MAVIRHFEASAEDRAAYLK----MRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAE 800 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT+S G GK +SS+D+ + R G+G+ A D K G LVA FPV DQI+L + Sbjct: 801 DLILTISNGGSGKLSSSHDYPVRGRGGQGVAAMD--KAMRGGPLVACFPVEIEDQIMLAT 858 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G IR P+ I SR+ GV +F TAK E VVSV I + DEAE E Sbjct: 859 STGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIA--DQGDEAEDAE 909 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 13/236 (5%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D V+ V+ G R + R G+ +GV + ++ + Sbjct: 698 SEDDDVMLVTDAGRAIRFRTTDVRV--FKGRDSTGVRGIRLAEGRSVVSMAVIRHFEASA 755 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 Y G + ++ T +E ++ + Sbjct: 756 EDRAAY-------LKMRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAEDLILTISN 808 Query: 654 HGNVRRNKLSDF-IQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G+ + + D+ ++ +A K +++ E+ I+L T GQ +R PI Sbjct: 809 GGSGKLSSSHDYPVRGRGGQGVAAMDKAMRGGPLVACFPVEIEDQIMLATSTGQSIRCPI 868 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 I F R++ GV+ AK + V+S+A++ + ++ + + + Sbjct: 869 KGI-SFRSRSAGGVKVFDTAKKETVVSVALIADQGDEAEDAEIISETGPEETTTSA 923 >gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] Length = 936 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 477/905 (52%), Positives = 637/905 (70%), Gaps = 21/905 (2%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 E I+ +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G Sbjct: 24 PPPIENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVP 83 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + Y K A+I G+VMG YHPHG+++IYDALAR+AQDW++R+ LI+GQGNFGS+D DPPA+ Sbjct: 84 GRPYRKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPAS 143 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K A LLDDL KDTV+F PNYDGS EP VL AR+PN+LVNG GGIAVGMA Sbjct: 144 MRYTEARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMA 203 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNLGEV+ C A +DNP I +D LM I+ GPDFPTGA+ILG++G + AY TGRGS Sbjct: 204 TNIPPHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALILGQSGARQAYHTGRGS 263 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R +E++ GDR IV+TEIPYQV K+ ++EKIAE ++KRI I+D+RDES+RQG Sbjct: 264 IIMRSRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQG 323 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V++LKR A+ DV+LNQL+R+T Q+ F NM+A+ G +PE L I+++FV FREE Sbjct: 324 VRIVMDLKRDATPDVVLNQLWRHTPAQTSFPANMLAIRGGRPETLNLRDIVESFVKFREE 383 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RR+K+ LNKAR+RAH+L+GL IAV NLDEVVRIIR S +P AR L+ R W +I Sbjct: 384 VITRRSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEI 443 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + I L++ TIG T LSEVQ RAIL+LRL RLT LGRD+I +EL L I E Sbjct: 444 ESYIKLVEAVD-TIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAEL 502 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L+IL +R RL ++ +E ++ E TPRRT I D++DED I REDMVVTV+H GY Sbjct: 503 LEILGNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTHGGY 562 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR PL +RAQRRGGKGRSG+ +DED VT+LF+ STHT VLFFS+ G VY++KVWRLP Sbjct: 563 IKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVWRLP 622 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G+PQARG+ +IN+L L GE+ITT++P PEDE SW+ L+VVFAT HGNVRRN + F Sbjct: 623 EGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFAN 682 Query: 668 INRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +GK AM+ D D ++ V T+++D+LL T+ G+ +RF + +R F R S GVR Sbjct: 683 VPTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVR 742 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+VIS++I+ DA DER Y++ + D+ + + Sbjct: 743 GILLKGDDEVISLSILKGFDASTDERDAYLRAAPWK----------------DNEADPTL 786 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S ER E + E+FILTV G+GKR+S+Y++R + R G+GI D + N G +VA F Sbjct: 787 SAERMAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERN--GPVVASF 844 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 P ++ +Q++LV+D+ LIR+ V + R+ R + GV +F+ + +E VV RI ES+ E Sbjct: 845 PAHNGEQLMLVTDQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESDDEAE 904 Query: 906 AESTE 910 A+ + Sbjct: 905 ADLGD 909 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 38/288 (13%) Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 E+ T+ + G V+R + + GK D + + +++ Sbjct: 650 PLPEDEESWSTLHVVFATAHGNVRRNSMDAFANVPTNGKFAMRFDEDATDRLIGVALLTE 709 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 VL + G + + + +L + +I+ + + + Sbjct: 710 QDDVLLATRGGKAIRFASTDVREFQSRTSTGVRGILLKGDDEVISLSILKGFDASTDERD 769 Query: 646 LYV---------------------------VFAT--KHGNVRRNKLSDFIQINRSGKIAM 676 Y+ T +G +R+ ++ + R G+ Sbjct: 770 AYLRAAPWKDNEADPTLSAERMAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIG 829 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +D+ + V ++L T + +R + RV GRNS GVR +++ + Sbjct: 830 NIDNLERNGPVVASFPAHNGEQLMLVTDQAKLIRLSVGDTRVI-GRNSAGVRLFNVSDNE 888 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 V+ A + +D + + + A + + Sbjct: 889 HVVGAARIEESDDEAEADLGDGTGEIAPADDAVVGEDLADGGEASGDE 936 >gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246] gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246] Length = 905 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 455/891 (51%), Positives = 633/891 (71%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ N + +++ Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] Length = 905 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 454/891 (50%), Positives = 633/891 (71%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE +R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 243 MRGRAEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S + A++ELM R W A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ N + +++ Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 130b] Length = 863 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 413/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K V S+ +V Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] Length = 905 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 456/891 (51%), Positives = 632/891 (70%), Gaps = 8/891 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L+EGQGNFGS+DGD AA R Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV FRE V+ Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVNFREVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ L Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ N + +++ Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNSEELGVSLTVPA 776 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937] gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937] Length = 877 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 408/903 (45%), Positives = 577/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 187 LSEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E+Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL++++++ + RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ + Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE+VV ++R+ E DE Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + A G IN+ ++ ++ T++G Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTQNGFG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + +++ + I++ T G VR +S + Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDSADQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ +QV+ + V D + I + + Sbjct: 813 SIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDELDSVVPVDGELPEEDIDEPENDDDT 872 Query: 775 LKNDS 779 +D Sbjct: 873 PADDE 877 >gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 887 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 417/905 (46%), Positives = 582/905 (64%), Gaps = 39/905 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIA+ V++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTLGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ W + D++ Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++NIL LN+ ERIT I+P E + +VV AT G V++ L++F Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMATAGGIVKKITLTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVR Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA + + E+++ + +++ NI Sbjct: 722 GIKLA-------------------------LTNDLNDDESAVEIEDVSDDNAEETLDLNI 756 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +NDQI+L+++ GTL+R V+E+ I R T+GV + T++ E VVS+ERI E + + Sbjct: 815 QVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874 Query: 906 AESTE 910 TE Sbjct: 875 ENPTE 879 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 100/252 (39%), Gaps = 25/252 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + VV + G VK++ L+ + R G + +RDED + + I ++ F Sbjct: 639 YEEDKFVVMATAGGIVKKITLTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635 SS G V + + + AL N L+ ++ + Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNI 756 Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690 NN ++ AT++G +R KL ++ +R+ K + + ++++ Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + + I+L T G VR +S + GRN+ GVR I ++ + V+S+ + D + E Sbjct: 817 EENDQIMLITNAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875 Query: 751 RICYMKHMSAQR 762 +++ Sbjct: 876 NPTESAVENSEE 887 >gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E] gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E] Length = 888 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 419/910 (46%), Positives = 585/910 (64%), Gaps = 40/910 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +NK Sbjct: 2 TELVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA R Sbjct: 62 SYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+Q+ LL DL K+TVDF PNYDG P VL + P++LVNG GIAVGMATN Sbjct: 122 YTEVRMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DGC+A +DN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + Sbjct: 182 IPPHNLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVY 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + +E REQI++TEIPYQVNKA ++EKI ELVR+K+I IA + D S+++G R Sbjct: 242 VRAKASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++AFV R EVV Sbjct: 302 LEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEAFVKHRREVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W+ ++ Sbjct: 362 TRRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAP 421 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + DG +LSE Q RAILELRL RLTGL + I E + + Sbjct: 422 MLEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEIL 481 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 ++I E + IL+S RL +I++EL VK + RRT I D+ ED I +ED+VVT Sbjct: 482 LQIGELIRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVVVT 541 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PL+ Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y Sbjct: 542 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLYWL 601 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP S ARG+ ++NIL L ERIT I+P + + +VV AT G V++ Sbjct: 602 KVYQLPEASRGARGRPIVNILPLEDNERITAILPVASYD---EDKFVVMATACGIVKKTA 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + Sbjct: 659 LTEFSRPRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAM-GRTA 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA + + EEI+ + ++ Sbjct: 718 TGVRGIKLA-------------------------LTNDISDDESAVEIEEISDDNAEDTL 752 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + NI + + E ILT ++ G+GKRT+ ++ +R+ KG+ + VS+ N G + Sbjct: 753 DLNIDKVVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERN--GKV 810 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE VVS+ER+ E E Sbjct: 811 VAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVAEPE 870 Query: 902 IVD-EAESTE 910 + +AES E Sbjct: 871 EDEFDAESPE 880 >gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396] gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396] Length = 879 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 407/915 (44%), Positives = 564/915 (61%), Gaps = 74/915 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH +L DL K+TVDF PNYDGS Q PVVL + PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+GC+A +DN DI +D LME I GPDFPT A+I GR GI AY TGRG I I Sbjct: 183 PPHNLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE +E IV+TEIPYQVNKA ++EKIAELV+EK++ I +LRDES ++G R Sbjct: 243 RARYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+RG +ADV++N L+ T L+++F +NMVAL +P+ L ++ FV R EVV Sbjct: 303 VVIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDCIECFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R H+L G A+A+AN+D V+ +I+ S A+ LM + W + Sbjct: 363 TRRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTG 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + + +G YLSEVQ ++IL+LRL +LTGL + I +E S+ Sbjct: 423 MLERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSII 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E L+IL + RL+ +I++EL +V++E R T I D+ D I EDMVVT Sbjct: 483 EQIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PL Y+AQ+RGGKG++ +RDEDFV L I ++H ++L F+S G +Y Sbjct: 543 LSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P S +RG+ ++NIL L + ERITT++P E + YV AT+ G V++ Sbjct: 603 KTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYT---ADHYVFMATRQGTVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + SG IA+ LD D ++ + D++L + G+ +RF +R GR + Sbjct: 660 LENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA+G V+S+ I Sbjct: 719 RGVRGIRLAQGQTVVSLII----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ +ILT S KG+GKRT+ +F + R G+G+ A S+ N G L Sbjct: 738 ------------PQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN--GDL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ V DQ++L+S++GTL+R +E+ I R T+GV + ++ E +V VERI E E Sbjct: 784 VSAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPE 843 Query: 902 IV------DEAESTE 910 +E E E Sbjct: 844 EDESDFQGEEGEGVE 858 Score = 74.1 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL + R G + + + D + I V+ F Sbjct: 640 YTADHYVFMATRQGTVKKTPLENFSRPRSSG--LIALALDEGDMLIGAAITDGKKDVMLF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G + + ARG I R+ + Y++ A+ Sbjct: 698 SSSGKAIRFNEDDVRPMGRTARGVRGI---------RLAQGQTVVSLIIPQEDAYILTAS 748 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRF 708 + G +R +S+F R G IA++ D + +V+ + + ++L + G VR Sbjct: 749 RKGYGKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISG-DQLMLISNQGTLVRT 807 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + GRN+ GVR I L++ + ++ + + + D + D Sbjct: 808 RSDEV-SIVGRNTQGVRLIRLSESEDLVGVERIAEPEEDESDFQGEEGEGVEAVDGDDLD 866 Query: 769 TEE 771 + + Sbjct: 867 SGD 869 >gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] Length = 893 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 383/905 (42%), Positives = 563/905 (62%), Gaps = 70/905 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 34 DQFAKETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 93 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD PAA R Sbjct: 94 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMR 153 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH +L DL K+TVDF PNYDG+ +EP++L + PN+L+NG GIAVGMATN Sbjct: 154 YTEIRMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATN 213 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV D C+A++ NP+I ++ L+E+I GPDFPT A+I G TG+K Y TGRG ++ Sbjct: 214 IPPHNLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIYGVTGVKEGYRTGRGRVI 273 Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R +H E R+ IV+ E+PYQVNKA +L +I ELVR+K+I I+DLRDESD+ G Sbjct: 274 MRARTHFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSG 333 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R +V+LN LY+ T +Q F +NMVAL +P L +L+AF+ R E Sbjct: 334 MRVVIELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRRE 393 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RR+ + L KAR+R HVL GLA+A++N+DEV+ +I+ + P A+ LM R W + + Sbjct: 394 VVTRRSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLV 453 Query: 428 KDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + ++ + +G +LS+ Q +AILELRL RLTGL +D I +E Sbjct: 454 EQMLARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEY 513 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I + LDIL+ R+ II +EL+++K + RR+ IV D+ ED I ED Sbjct: 514 RDVMERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSMEDLIASED 573 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GY+K PL YRAQ+RGG+G+ +D+DF+ +LFI +TH +L FSS G Sbjct: 574 VVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSRGR 633 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY KV+ +P G +RG+ ++N++ L GE+I ++P + +N YV AT G V Sbjct: 634 VYWIKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPIKTFD---DNRYVFMATSLGTV 690 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ LS+F + SG IA+ LD D ++ V ++D++L + G+ VRF + +R Sbjct: 691 KKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPM- 749 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG++L KG +VIS+ + Sbjct: 750 GRGARGVRGMTLGKGQKVISLLVAESE--------------------------------- 776 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 EQ +LT +E G+GKRT ++ R +G+ A ++ N Sbjct: 777 -------------------EQAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRN- 816 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V V ++D+I+L++ G LIR V E+R SRAT+GV++ + + E++ +ER+ Sbjct: 817 -GKVVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGEKLAGLERV 875 Query: 898 RESEI 902 E++ Sbjct: 876 VETDE 880 Score = 79.1 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + LG VK+ PLS + R G V + ++DF+ + + V+ FS G Sbjct: 680 YVFMATSLGTVKKTPLSEFSRPRASG--IIAVGLDEDDFLIGVALTEGKHDVMLFSDGGK 737 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + ARG + ++L +G+++ +++ + V+ AT++G Sbjct: 738 AVRFDENDVRPMGRGARG---VRGMTLGKGQKVISLL-----VAESEEQAVLTATENGYG 789 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R +S++ + R + + + +++ ++++I+L T G +R + +R Sbjct: 790 KRTPISEYTRHGRGSQGMIAIKTTQRNGKVVGARLVREDDEIMLITTGGVLIRTRVKEVR 849 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 + R + GV I+L +G+++ + V+ D Sbjct: 850 EMS-RATQGVILINLDEGEKLAGLERVVETDEAP 882 >gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999] Length = 885 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 407/909 (44%), Positives = 576/909 (63%), Gaps = 67/909 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Sbjct: 2 TDRAKEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TV+F PNYDG+ + P V+ R PN+LVNG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GCVA+I+NP ++ L+E I GPDFPT A+I GR GI+ AY TGRG I Sbjct: 182 IPPHNLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIY 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+V E+PYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R Sbjct: 242 LRARAEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR SA+V+LN LY T LQ++F +NMVAL+ +P+ F L L+ F+ R EVV Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KARDRAH+L GLAIA+AN+D V+ +I+ SP+P A+ +L + W D+ + Sbjct: 362 TRRTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAE 421 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D + DG YL+E Q +AIL+LRL +LTGL D I +E L Sbjct: 422 MLERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLL 481 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L IL S RL+ +I++EL +++DE RRT I D++ ED I RED+VVT Sbjct: 482 DVIAELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVVVT 541 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK LS Y AQ+RGGKG+S M+DEDF+ L + +TH +L FS+ G +Y Sbjct: 542 LSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYWL 601 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP+ S ARG+ ++NIL L +GERIT I+P E + YV AT +G V++ + Sbjct: 602 KVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFV---DGKYVFMATTNGTVKKTE 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ + + +G IA+ L+ +E++ V+ +++I+L + G+ VRF +R GR + Sbjct: 659 LTQYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPM-GRTA 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + +V+S+ + Sbjct: 718 TGVRGIRLEEDQKVVSLIV----------------------------------------- 736 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E +LT +E G+GKRT ++ +R+ KG+ + VS+ N G + Sbjct: 737 ------------PQGEGAVLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSERN--GLV 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V VN++D+I+L+SD+GTL+R E+ R T+GV + T ++E VV ++RI E E Sbjct: 783 VGAVQVNEDDEIMLISDQGTLVRTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVE 842 Query: 902 IVDEAESTE 910 + E Sbjct: 843 SSNIETDEE 851 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 101/255 (39%), Gaps = 15/255 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 V + G VK+ L+ Y R G + +E DL + ++ FS G Sbjct: 643 KYVFMATTNGTVKKTELTQYSRPRANGIIAVNLNDGNELIGVDL--TDGDSEIMLFSDAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A G + + L + +++ +++ V+ AT++G Sbjct: 701 KVVRFHEEQVRPMGRTATG---VRGIRLEEDQKVVSLI------VPQGEGAVLTATENGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R ++++ +R+ K + + + + ++++I+L + G VR + + Sbjct: 752 GKRTDIAEYPAKSRATKGVVSIKVSERNGLVVGAVQVNEDDEIMLISDQGTLVRTRATEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I + + V+ + + ++ E + A ++ D + Sbjct: 812 STV-GRNTQGVTLIRTGENENVVGLQRIDEVESSNIETDEEGNVIEADAVTVTTDIDSAQ 870 Query: 774 SLKNDSSVEGNISEE 788 L +D+ G+ E Sbjct: 871 PLASDNESTGSDDTE 885 >gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44] gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44] Length = 898 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 386/924 (41%), Positives = 560/924 (60%), Gaps = 69/924 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ ++ Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +G LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ R+ II +EL +VK E RR+ + D+ Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P E+ S + + Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+++ + VI+M + D + Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 Q +LT +E G+GKRT+ ++ R KG+ Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + + Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855 Query: 888 DERVVSVERIRESEIVDEA-ESTE 910 +++ ++RI E++ D A E E Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L+ + R+ G V + + D++ + V+ F Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648 S G + + ARG +N + + + + ++ D+ + N + V Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR ++ IR GR + GV I+L +G ++I + ++ DA+ + S Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDEGAKLIGLQRIVENDANDNAGEDGEADDSGSAGAE 889 Query: 766 SGDTEEITS 774 S Sbjct: 890 GAAESGDAS 898 >gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] Length = 863 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 412/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GL IA+AN+DE++ +I+ S P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K V S+ +V Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718] gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC 19718] Length = 848 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 385/905 (42%), Positives = 565/905 (62%), Gaps = 69/905 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C+ ++ +PD+D+ LM I PDFPT +I G +GIK+ Y TGRG ++ Sbjct: 182 IPPHNLGEVIDACLLLLRDPDVDIAELMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ G+R I++ E+PYQVNKA +L +I ELVR+KRI I+DLRDESD+ G Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T +Q F +NMVAL +P L +L F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDHFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A++ LM R+W +S ++ Sbjct: 362 VTRRTLFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVE 421 Query: 429 DLIDLIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++ + SD LS+ Q +AIL+LRL RLTGL ++ I +E Sbjct: 422 EMLLRAMIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYR 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I++ LDIL++ R+ II +EL ++K + PRR+ +V ++ ED I DM Sbjct: 482 EILDKIRDLLDILANPERITTIIVEELTAIKGQFGDPRRSEVVIDAQNLNTEDLITPADM 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K L YRAQ+RGG+G+ + R++DF+ +LFI +TH +L FSSLG V Sbjct: 542 VVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P GS +RG+ + N++ L Q E+I ++P + + YV +T G V+ Sbjct: 602 YWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFD---DTRYVFMSTAGGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F + +G IA+ LD D ++ V ++D++L + G+ +RF + +R G Sbjct: 659 KTPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRG+ L G QVIS+ + + + Sbjct: 718 RNARGVRGMKLGAGQQVISLLVADNENMA------------------------------- 746 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LT +E G+GKRT ++ NR +G+ A + + N Sbjct: 747 ---------------------VLTATENGYGKRTPITEYTRHNRGTQGMIAINTNVRN-- 783 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA V +D+I+L++ G +IR V+EIR RAT+GV + + E++ +ERI Sbjct: 784 GKVVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGEKLAGLERIV 843 Query: 899 ESEIV 903 E++ Sbjct: 844 ETDED 848 >gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] Length = 905 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 460/900 (51%), Positives = 634/900 (70%), Gaps = 15/900 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M Sbjct: 1 MTDN-------NSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+ Sbjct: 54 HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C +DN DI++ L+E+++GPDFPT +ILG GIK+A Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI IRG + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLR Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES++ G R+ IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ A Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE V+ RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P A++ELM R Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SW+A +I L+ L+DD + + +G +E Q +AILE+RL RLT + ++ + +L +L Sbjct: 414 SWDALNILPLVKLVDDKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI E L+IL SR RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVV Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KRVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K+++LP+ +PQ +G+ ++NIL L E IT IMP PE++ W+NL ++FAT GN+RR+ Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L DF +I +GKIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GVRG+ LA+ D VISM ++ A +ER Y+ +R I+ E N Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +++ E E+ E+FILTV+E GFGKR+S+Y +RI++RSG GI D++ ++ G Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDIN--DKTGL 825 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V PV +D+++L+++ G LIR + +RI R T GV +F E+VVS I ES Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885 >gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586] gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586] Length = 877 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 405/903 (44%), Positives = 574/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 187 LSEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKDILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL +++++ + RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ + Sbjct: 723 GINLQDDDRVVSLIVPRGDGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA++ERVV ++R+ E DE Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + A G IN+ ++ + ++ T++G Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGDGDILTVTQNGFG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + +++ + I++ T G VR +S + Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ ++V+ + V D + + I + + Sbjct: 813 SIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDSVVPVDGELPQEDIDEPESDDDA 872 Query: 775 LKNDS 779 +D Sbjct: 873 PADDE 877 >gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126] Length = 904 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 412/927 (44%), Positives = 574/927 (61%), Gaps = 87/927 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + K I V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Sbjct: 3 DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVDF PNYDG+ P VL + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++GCVA+I +P I +D LM I GPDFPT A+I GR GI++AY TGRG I + Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE S +E IVV EIPYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R+ Sbjct: 243 RAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR SA+V+LN LY T LQ++F +NMVAL+ +P+ F L L+ F+ R EVV Sbjct: 303 VIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P A++ L+ + W+ D+ + Sbjct: 363 RRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQM 422 Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D + DG YL+E Q +AIL+LRL +LTGL + I E L Sbjct: 423 LERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E L IL+S RL+ +I++EL V+DE RRT I D++ ED I +ED+VVT+ Sbjct: 483 IIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S GYVK L+ Y AQRRGG+G+S M+DEDF+ L + +TH +L FS+ G +Y K Sbjct: 543 SREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYWLK 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP S ARG+ ++NIL L + ERIT I+P E E +V+ AT +G V++ L Sbjct: 603 VYQLPFASRNARGRPIVNILPLEENERITAILPIKEFE---EGKFVLMATANGTVKKTDL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS----------- 711 S + + SG IA+ L+ DE++ V+ ++DI+L + G+ VRF Sbjct: 660 SLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKR 719 Query: 712 ---------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 A+R GR + GVRGI L G +V+S+ + Sbjct: 720 DPETGEELLALRPM-GRTATGVRGIRLQDGQKVVSLIV---------------------- 756 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 + ILT +E GFGKRT D+ +R Sbjct: 757 -------------------------------PKGDGPILTATENGFGKRTPLEDYPAKSR 785 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 + +G+ + VS+ N G +V V++ ++I+L+SD+GTL+R V E+ + R T+GV + Sbjct: 786 ATQGVVSIKVSERN--GKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVVGRNTQGVRL 843 Query: 883 FSTAKDERVVSVERIRESEIVDEAEST 909 T + E VV ++RI E E + E + Sbjct: 844 IRTVEGEHVVGLQRIEEVEELQEFDED 870 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 65/440 (14%), Positives = 140/440 (31%), Gaps = 38/440 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + ++ L + + + ++ +I+ E + ++I ID Sbjct: 474 LEEYKQLLEIIAELLHILNSPERLMEVIQE----ELEKVRDEFGDERRTEITAASHDIDI 529 Query: 437 SSYTIGSDGTMYLS-EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + LS E + GR ++ + E L + ++ Sbjct: 530 EDLIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKD--EDFIERLLVANTHD 587 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + L P +R G + E + + Sbjct: 588 HILCFSTRGRLYWLKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLM 647 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+ LS+Y R G + DE D+ ++ FS G V + Sbjct: 648 ATANGTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGVDI--THGDDDIMLFSDAGKVVRF 705 Query: 602 K--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVF 650 + G + + +L+L R T + + ++ Sbjct: 706 NEKLRDSETGEVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGPILT 765 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT++G +R L D+ +R+ + + + +++ + N+I+L + G VR Sbjct: 766 ATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVGAVQVDETNEIMLISDQGTLVR 825 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + + GRN+ GVR I +G+ V+ + + + + +S + Sbjct: 826 TRVGEV-SVVGRNTQGVRLIRTVEGEHVVGLQRIEEVEELQEFDEDGNLIISDDAPEQAE 884 Query: 768 DTEEITSLKNDSSVEGNISE 787 + + E Sbjct: 885 TAVQEQENTAEDGDGSTTEE 904 >gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] Length = 852 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 389/906 (42%), Positives = 559/906 (61%), Gaps = 69/906 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 NQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYD S +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV+ C+A++ N +I +D L+++I PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVEACLALLKNSNISIDELIDLIPAPDFPTAGIIYGVNGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E Q I++ E+PYQVNKA +L +I ELVR+K+I I+DLRDESD+ G Sbjct: 242 MRARTHFEDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T +Q F +NMVAL +P L IL AF+ R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQILDAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+ LM ++W++ ++ Sbjct: 362 VTRRTVFELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVE 421 Query: 429 DLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++ + + +G +LS+ Q +AILELRL RLTGL ++ I E Sbjct: 422 EMLTRAMADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYK 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I + LDIL++ R+ II +EL ++K + RR+ IV D+ ED I D+ Sbjct: 482 DVIEKIIDYLDILANPERITQIITEELDAIKLQFGDERRSEIVVDTQDLSMEDLITPADV 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K L YRAQ+RGG+G+ +++DF+ LFI +TH +L FSSLG V Sbjct: 542 VVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLGRV 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P G Q+RGK +IN + L +GE+I I+P + N +V AT G V+ Sbjct: 602 YWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFD---ENRFVFMATSFGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F + +G IA+ LD D ++ VE ++D++L + G+ +RF + +R G Sbjct: 659 KTPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPM-G 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ L G +VISM + + D Sbjct: 718 RTARGVRGMKLGPGHKVISMLVAENEDLA------------------------------- 746 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LT +E G+GKRT ++ NR +G+ A S N Sbjct: 747 ---------------------VLTATENGYGKRTPISEYTRHNRGTQGMIAIITSARN-- 783 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +V V +D+I+L++ G LIR VNE+R SRAT+GV + + E++ +ER+ Sbjct: 784 GKVVTAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVV 843 Query: 899 ESEIVD 904 ESE D Sbjct: 844 ESEDDD 849 Score = 85.2 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 98/216 (45%), Gaps = 14/216 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ PLS + R G + + + DF+ + + V+ FS G Sbjct: 647 FVFMATSFGTVKKTPLSEFSRPRNNG--IIAIGLDEGDFLIGVELTEGKHDVMLFSDNGK 704 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + ARG + + L G ++ +++ +L V+ AT++G Sbjct: 705 AMRFSENDVRPMGRTARG---VRGMKLGPGHKVISMLVAEN-----EDLAVLTATENGYG 756 Query: 658 RRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R +S++ + NR + + + ++++ + +++I+L T G +R ++ +R Sbjct: 757 KRTPISEYTRHNRGTQGMIAIITSARNGKVVTAKLVKPDDEIMLITSGGVLIRTRVNEVR 816 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + R + GV I+L G+++ + V+ ++ D + Sbjct: 817 EMS-RATQGVTLINLDAGEKLAGLERVVESEDDDGD 851 >gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D] gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D] Length = 889 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 383/910 (42%), Positives = 559/910 (61%), Gaps = 65/910 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421 Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L + QVI+M + A + Sbjct: 719 RPM-GRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSGAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852 Query: 894 VERIRESEIV 903 ++R+ ES+ Sbjct: 853 LQRVMESDAE 862 Score = 75.6 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----FPEDESSWNNLYV 648 S G + + QARG +N L + +++ ++ + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEENQQVIAMLVAPAETAGEGAQSGAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV IS+ +G+++ + V+ +DA+ + + A Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGADAVEGADAADAAPGAD 880 Query: 766 SGDTEEITS 774 + + + Sbjct: 881 AQSDDSSET 889 >gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b] gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b] Length = 879 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 408/905 (45%), Positives = 582/905 (64%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 LREVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAI++AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 367 IFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL +++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR++ GVR Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAM-GRSASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIKLAEGDKVVSLIVPREEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G +V Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D+DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 86/222 (38%), Gaps = 15/222 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L + R G + +R++D + + + + + FS+ G V + Sbjct: 650 TADGTVKKTALQEFSRPRSAG--IIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+++ +++ ++ T++G +R Sbjct: 708 EAAVRAMGRSA---SGVRGIKLAEGDKVVSLI------VPREEGAILTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVVGAVQVDDSDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 N+ GV I A+ + V+ + V + + Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGD 859 >gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4] gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4] Length = 879 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 413/905 (45%), Positives = 572/905 (63%), Gaps = 69/905 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+ID P + ++ LME I GPDFPT A++ GR GI++AY TGRG V+R Sbjct: 186 NLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 ATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ+ F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 VKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W +++ +++ Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + I +E L I Sbjct: 426 AGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL V + RRT + +D+ ED I ED+VVT+SHL Sbjct: 486 ALLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S QARG+ +IN+L L +GERIT I+P E + + YV+ AT HG V++ L + Sbjct: 606 LPLASRQARGRPIINLLPLAEGERITAILPVREYD---ADKYVIMATSHGTVKKTSLDQY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D+++ V+ +N+++L + G+ VRF +R GR + GVR Sbjct: 663 SRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVRGM-GRTATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L G V+S+ + Sbjct: 722 GIKLEDGQSVVSLIV--------------------------------------------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT ++ +R+ KG+ + VS+ N GA+V Sbjct: 737 --------PKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERN--GAVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +ND+I+L+SDKGTL+R P + + R T+GV I TA DE VV ++RI EI DE Sbjct: 787 QVLENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQRI--DEIQDE 844 Query: 906 AESTE 910 E E Sbjct: 845 QEFDE 849 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 95/253 (37%), Gaps = 15/253 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V+ + G VK+ L Y R G V ++D D + + I + V+ F Sbjct: 639 YDADKYVIMATSHGTVKKTSLDQYSRPRANG--IIAVNLKDGDQLIGVDITNGDNEVMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G V + ++ A G + + L G+ N+ ++ T Sbjct: 697 SNEGKVVRFSEDQVRGMGRTATG---VRGIKLEDGQ------SVVSLIVPKNDGAILTVT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +L ++ +R+ K + + + + + ++I+L + G VR P Sbjct: 748 ENGYGKRTELDEYPAKSRATKGVVSIKVSERNGAVVGAVQVLENDEIMLISDKGTLVRTP 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S + GRN+ GV I A + V+ + + + + ++ + Sbjct: 808 ASGVSTI-GRNTQGVTIIRTATDETVVGLQRIDEIQDEQEFDEEGNPIITDTVEEQQVEG 866 Query: 770 EEITSLKNDSSVE 782 E + + E Sbjct: 867 EAPEAEPDVEPNE 879 >gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175] gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175] Length = 916 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 410/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL+ + DE RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GERIT I+P E + Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++R GR + GVRGI L +G +V+S+ + A Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ILTV+E G+GKRT ++ +R+ K Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910 A DE+VV ++RI E DE E E Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 17/250 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I + ++ F Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696 Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641 S+ G V + KV G + + +LSL R T + Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698 + ++ T++G +R +LS++ +R G +++K+ R+ + ++++L Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + GRN+ GV I A ++V+ + + +D DE + Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875 Query: 759 SAQRRLISGD 768 +I G+ Sbjct: 876 PIVPVIIEGE 885 >gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] Length = 940 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 471/902 (52%), Positives = 641/902 (71%), Gaps = 9/902 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V++ +EM SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G +K Y K A Sbjct: 22 LMPVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI+G+VMGKYHPHG+AAIYDAL R+AQ +SLR+ LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 82 RINGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++A FLL+D+ +DTVDF+PNYD S EP VL A YPN+LVNG GIAVGMAT IPTHN Sbjct: 142 ARSASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNP 201 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D +A+IDNPDI LD LM +I GPDFPTG +ILGR+GI++A+ TG+GSI +R + Sbjct: 202 TEVIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRARTD 261 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G R+ IV++EIPYQVNKA + E++AELVR K+I I+D+RDESDR G RVVIELK Sbjct: 262 FEEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK 321 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ DV+LN L+R+T LQ + +NM+AL+G +P L +L F+ FRE+V++RR ++ Sbjct: 322 RDATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRRARF 381 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+ +AR LM+R W A+D+ L+ LID Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + T+ L+EVQ R ILELRL RLTGL RD I NE+ + I E L+I+ S Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + ++++EL ++ EL++PRR+ I + L D +DE I MVVT++ G++KR PL V Sbjct: 502 RRMEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDV 561 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG+GR+ MR +D VT F TH VLFFSS G Y++KVWRLP P A+G Sbjct: 562 FRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKG 621 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +AL+N+L + IT ++P P+DES W L++VFAT G +RRN+LSDF + SG IA Sbjct: 622 RALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIA 681 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGVRGISLAKGD 733 MKLD D ++ V TC + +DI+L ++LG+C+RF +RVFAGR S GVRG+ LA+GD Sbjct: 682 MKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGD 741 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT------SLKNDSSVEGNISE 787 +VIS++++ H +A +ER Y+++ SA+RR +G+ ++I + + +S Sbjct: 742 EVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSP 801 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ER L+ E+F+LTV+ GFGKR+S+YD+R+S R G+GI +++ N A+ A FPV Sbjct: 802 ERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGR-AVAATFPV 860 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D ++LV+D G LIRVP +++RI R+T GV +F KDE V SV + E+E VD+ Sbjct: 861 RPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDDNG 920 Query: 908 ST 909 Sbjct: 921 DD 922 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Query: 645 NLYVVFATKHGNVRRNKLSDF-IQINRSGKIA-MKL--DSRDEILSVETCTQENDILLTT 700 +++ T G +R+ D+ + IA + L + + + +D++L T Sbjct: 811 EEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRAVAATFPVRPGDDVMLVT 870 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G+ +R P +R GR+++GV + K + V S+ VL ++ D A Sbjct: 871 DAGRLIRVPADQVR-ITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDDNGDDADSVAPA 929 Query: 761 QRRLISGDTEE 771 D+++ Sbjct: 930 APDGQVTDSDD 940 >gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195] gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195] gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678] Length = 916 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 409/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL+ + +E RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELVQILEEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GERIT I+P E + Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++R GR + GVRGI L +G +V+S+ + A Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ILTV+E G+GKRT ++ +R+ K Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910 A DE+VV ++RI E DE E E Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872 Score = 62.1 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 17/249 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I + ++ F Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696 Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641 S+ G V + KV G + + +LSL R T + Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698 + ++ T++G +R +LS++ +R G +++K+ R+ + ++++L Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + GRN+ GV I A ++V+ + + +D DE + Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875 Query: 759 SAQRRLISG 767 +I G Sbjct: 876 PIVPVIIEG 884 >gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185] gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223] gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185] gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223] Length = 916 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 410/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL+ + DE RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GERIT I+P E + Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++R GR + GVRGI L +G +V+S+ + A Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ILTV+E G+GKRT ++ +R+ K Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910 A DE+VV ++RI E DE E E Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872 Score = 62.1 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 17/249 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I + ++ F Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696 Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641 S+ G V + KV G + + +LSL R T + Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698 + ++ T++G +R +LS++ +R G +++K+ R+ + ++++L Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + GRN+ GV I A ++V+ + + +D DE + Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875 Query: 759 SAQRRLISG 767 +I G Sbjct: 876 PIVPVIIEG 884 >gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 879 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 409/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTG+ + + +E +L EI Sbjct: 427 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 >gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T] gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T] Length = 883 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 387/904 (42%), Positives = 558/904 (61%), Gaps = 67/904 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + H LL D+ K+TVDF PNYDGS +EP+VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+VD C+ ++ PD D++AL++I++ PDFPT +I G G++ Y TGRG ++ Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E DR+ I+V E+PYQVNK + E++AELV EK+I I+++RDESD+ G Sbjct: 242 MRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN+L+++T LQ F +NMVAL KP L +L F+ R EV Sbjct: 302 RLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P A+RELM R W ++ ++ Sbjct: 362 VTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVE 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ SY LSE Q +AILELRL RLTGL +D I E + Sbjct: 422 EMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL+ R+ II +EL +++++ PRR+ +V ++ ED I EDMVV Sbjct: 482 MDVITDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIEDLITPEDMVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY KR PL+ YRAQRRGG+G+ M+DEDF+ LF+ +TH +VL FS+ G Y Sbjct: 542 TLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P G+ +RGK ++N+ L +GE+IT ++P E + +V AT G V++ Sbjct: 602 LKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFD---EEHFVFMATSEGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+ F ++G IA+ LD D ++ V + D++L + G+ VRF + +R GR+ Sbjct: 659 ALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPM-GRD 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG++L G VI+M + Sbjct: 718 ARGVRGMTLEDGQAVIAMLVAKD------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + Q +LT +E G+GKRT ++ R KG+ A S N G Sbjct: 741 ---------------ESQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V +D+++L+S G LIR V IR R+T+GV + + + + S+E++ ES Sbjct: 784 LVGAVLVEPSDEVMLISTGGVLIRTSVESIREMGRSTQGVTLINLDEGTFLASIEKVAES 843 Query: 901 EIVD 904 E + Sbjct: 844 ESDE 847 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 93/252 (36%), Gaps = 14/252 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E V + G VK+ L+ + R+ G + D + V+ F Sbjct: 640 FDEEHFVFMATSEGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAI--TDGQCDVMLF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + ++L G+ + ++ + + V+ AT Sbjct: 698 SDAGKAVRFAETDVRPMGRDARG---VRGMTLEDGQAVIAMLVAKD-----ESQSVLTAT 749 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R K + + + D + ++++L + G +R Sbjct: 750 ENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGRLVGAVLVEPSDEVMLISTGGVLIRTS 809 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +IR GR++ GV I+L +G + S+ V +++D R + + Sbjct: 810 VESIREM-GRSTQGVTLINLDEGTFLASIEKVAESESDESMRASGEGAEGGEAEGGAQAA 868 Query: 770 EEITSLKNDSSV 781 Sbjct: 869 PGEGEAPAADEE 880 >gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z] gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z] Length = 890 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 419/908 (46%), Positives = 578/908 (63%), Gaps = 39/908 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + IT VSI DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G NK Sbjct: 3 ELSQDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A IDN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I REQIVVTEIPYQVNKA ++EKI EL+REK+I I+ + D S+++G R+ Sbjct: 243 RAKAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRL 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I++KR A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV Sbjct: 303 EIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPKLFNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ +G YLSE Q RAILELRL RLTGL + I +E + + Sbjct: 423 LEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILV 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E L IL+S RL +I++EL VK + RRT I D+ ED I +ED+VVT+ Sbjct: 483 QIGEYLHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PL+ Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y K Sbjct: 543 SHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYWLK 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP S ARG+ ++NIL L + ERIT I+P + + +V+ AT G V++ L Sbjct: 603 VYQLPEASRGARGRPIVNILPLEENERITAILPVASYD---EDKFVLMATAGGIVKKTAL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++F + +G IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + Sbjct: 660 TEFSRPRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI LA + + EE++ + S++ Sbjct: 719 GVRGIKLA-------------------------LTNDLSDEESAVEIEEVSEDNSQESLD 753 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 NI + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +V Sbjct: 754 LNIDKVVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVV 811 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V + DQI+L++D GTL+R V E+ + R T+GV + TA+DE+VVS+ER+ E + Sbjct: 812 AATQVEEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSLERVAEPDD 871 Query: 903 VDEAESTE 910 + E E Sbjct: 872 EFDGEDVE 879 >gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602] gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602] Length = 883 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 410/903 (45%), Positives = 576/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKILGLKEILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ ++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLAS 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L ++I Sbjct: 427 AGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILS+ RL+ +I++EL +++D+ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ I Sbjct: 723 GIRLGEGDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV++ GFGKRT S ++ +R+ +G+ + VS+ N G ++ Sbjct: 738 --------PRGDGCILTVTQNGFGKRTESTEYPTKSRATQGVISIKVSERN--GPVIGAI 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V++ DQI++++D GTL+R V+E+ R T+GV + TA DE VV ++R+ E +E Sbjct: 788 QVDEADQIMMITDAGTLVRTRVSEVSTVGRNTQGVTLIRTADDENVVGLQRVAEPVEDEE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 15/249 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L+ + R G + DE DL V+ FS+ G V Sbjct: 646 VFMATASGTVKKTALTDFSRPRSAGIIAINLNEGDELIGVDL--TDGKDEVMLFSAAGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + + A G I R+ + ++ T++G + Sbjct: 704 VRFSEEAVRSMGRTATGVRGI---------RLGEGDSVVSLIIPRGDGCILTVTQNGFGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R + +++ +R+ + + + + + + + I++ T G VR +S + Sbjct: 755 RTESTEYPTKSRATQGVISIKVSERNGPVIGAIQVDEADQIMMITDAGTLVRTRVSEVST 814 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A + V+ + V D + + + + ++ S Sbjct: 815 V-GRNTQGVTLIRTADDENVVGLQRVAEPVEDEELDGVATEAGELEAAQAADLPDDAESE 873 Query: 776 KNDSSVEGN 784 + + + Sbjct: 874 DDQPADDEE 882 >gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 871 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 414/919 (45%), Positives = 573/919 (62%), Gaps = 68/919 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ I K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MSKGYIQIMVYLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV Sbjct: 61 SELSNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG Sbjct: 121 DGDAPAAMRYTEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Sbjct: 181 GIAVGMATNIPPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEG 240 Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TG+G +VIR + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ L Sbjct: 241 YRTGKGRVVIRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGL 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+QG RVVIELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ Sbjct: 301 RDESDKQGMRVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILE 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R EVV RRT + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ Sbjct: 361 YFIKHRREVVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLS 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471 + W +K +++ ++ + LSE Q +AILELRL RLT L +D Sbjct: 421 KIWQPGLVKAMLEKAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQD 480 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I NE L IKE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED Sbjct: 481 KIINEFEELLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIED 540 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVT+SH GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L Sbjct: 541 LITEEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLC 600 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G +Y K ++LP S +RG+ +INIL L +GE I ++P E + + YV A Sbjct: 601 FSNHGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMA 657 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 TK G V++ L+ F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S Sbjct: 658 TKKGTVKKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDES 717 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRGI + K V S+ +V Sbjct: 718 KVRPM-GRTARGVRGIRVEKDQAVKSLVVVDP---------------------------- 748 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ILT +E G+GKRT ++R+S R G+G+ + Sbjct: 749 ------------------------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQ 784 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 V++ N G +V V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E V Sbjct: 785 VTERN--GKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAV 842 Query: 892 VSVERIRE-SEIVDEAEST 909 V +++I + E ++EAE + Sbjct: 843 VGMQKIVDLGEELEEAEDS 861 >gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] Length = 891 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 386/921 (41%), Positives = 550/921 (59%), Gaps = 78/921 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP +D L+EII PDFPTG +I G +G++ Y TGRG ++ Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IV+ IPYQVNK + E+IAELV +K+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421 Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ D + + DG LS+ Q + IL +RL RLTGL +D I Sbjct: 422 DMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II EL ++K E RR+ I +++ Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L GE+IT ++P E + YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---EDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG+ L + VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMMLEETQTVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRT ++ R KG+ A Sbjct: 749 -----------------------AGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 + N G +V VN D+I+L++ G L+R V EIR RAT+GV + + Sbjct: 786 IQTTSRN--GKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGS 843 Query: 890 RVVSVERIRESEIVDEAESTE 910 + V R+ ES+ D+ E E Sbjct: 844 TLSGVRRVVESDADDDGELDE 864 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 136/408 (33%), Gaps = 27/408 (6%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + S+I+ +D +D + L Sbjct: 495 LLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITPTDMVVTL 554 Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 S + Q + + G ++ + I D L S + + Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNRGRVYWLK 614 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556 + V R IV + E + V + G VK+ PLS + Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+ G + D D++ + V+ FS G + + ARG Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGRNARG- 731 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + + L + + + ++ + V+ AT++G +R + ++ + R K + Sbjct: 732 --VRGMMLEETQTVIALLVAGD-----ETQTVLTATENGYGKRTPIGEYTRHGRGTKGMI 784 Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + +++ ++I+L T G VR ++ IR GR + GV I++ G Sbjct: 785 AIQTTSRNGKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLINVDDGS 843 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 + + V+ +DAD D + + DT + Sbjct: 844 TLSGVRRVVESDADDDGELDEDVQAEDGQAQGGDDTNGAADSTEPTEQ 891 >gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J] gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J] Length = 889 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 387/917 (42%), Positives = 566/917 (61%), Gaps = 66/917 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421 Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V AT Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L + QVI+M + Sbjct: 719 RPM-GRQARGVRGMNLEETQQVIAMLVAP------------------------------- 746 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +E + + +LT +E G+GKRT ++ R KG+ A S Sbjct: 747 ------------AETEGEGAQSVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852 Query: 894 VERIRESEIVDEAESTE 910 ++R+ ES+ + AES E Sbjct: 853 LQRVMESDA-EGAESIE 868 Score = 75.6 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---- 648 S G + + QARG +N L + +++ ++ P + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEETQQVIAMLVAPAETEGEGAQSVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV IS+ +G+++ + V+ +DA+ E I A Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGAESIEGADAADAAPDAD 880 Query: 766 SGDTEEITS 774 + + + Sbjct: 881 AQADDSSET 889 >gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] Length = 874 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 411/909 (45%), Positives = 577/909 (63%), Gaps = 68/909 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Sbjct: 9 EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RY Sbjct: 69 YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 128 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH +L DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 129 TEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 188 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I Sbjct: 189 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 248 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + +E RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R Sbjct: 249 RARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV Sbjct: 309 IVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ RSW + Sbjct: 369 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRSWALGTVAA 428 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D + +G +L+E Q +AIL+LRL +LTGL + + E L Sbjct: 429 MLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLL 488 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I+E L IL S RL+ +I++EL ++++ + RRT I E D+ ED I +ED+VVT Sbjct: 489 KQIEELLFILRSPDRLMEVIREELEAIRNVYNDARRTEITENTADINIEDLINQEDVVVT 548 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y Sbjct: 549 LSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWM 608 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP S ARG+ ++N+L L Q ERIT I+P E E YV AT G V++ Sbjct: 609 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMATASGTVKKTP 665 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L DF + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + Sbjct: 666 LQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTA 724 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L D+V+S+ I Sbjct: 725 TGVRGIKLMDDDKVVSLII----------------------------------------- 743 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G + Sbjct: 744 ------------PRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GHV 789 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V D DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E+E Sbjct: 790 VGAIQVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 849 Query: 902 IVDEAESTE 910 D + + Sbjct: 850 DDDNDSNDQ 858 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 67/420 (15%), Positives = 141/420 (33%), Gaps = 35/420 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + +L + + E + IR N ARR + + Sbjct: 476 EHEKLLEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYN--DARRTEITENTAD 533 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y LS+ + + + D I L + Sbjct: 534 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 593 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ Sbjct: 594 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 646 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ PL + R G + DE DL + V+ FS Sbjct: 647 EEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 704 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + + A G I ++ ++ +++ T+ Sbjct: 705 AQGKVVRFAEDAVRAMGRTATGVRGIKLMDDDK---------VVSLIIPRGEGHILTVTE 755 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + +++ +R+ + + + ++ + I++ T G VR + Sbjct: 756 NGYGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTLVRTRV 815 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ ++V+ + V + D ++ + + E Sbjct: 816 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETEDDDNDSNDQEDADDVNVDNETNNEE 874 >gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8] gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8] Length = 862 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 565/909 (62%), Gaps = 67/909 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ ++NK Sbjct: 2 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D C +++ NP+ ++ L+E++ PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVLDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +H E G R+ I++ E+PYQVNK ++EKIAELV EK+I I+DLRDESD+ G Sbjct: 242 MRGRTHFEDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG DV+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EV Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE++ II+ +P P A+++LM +SW + ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVE 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + + LS+VQ + IL++RL RLTGL +D I NE + Sbjct: 422 EMLKRAAMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL++ +R+ II EL ++ + RR+ IVE D+ ED I +D+VV Sbjct: 482 MDVIADLLDILATAARVTAIITDELTEIRRQFGDKRRSEIVENAQDLSLEDLIAPQDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+K PL YRAQ+RGG+G+ +++DF+ +F+ +TH +L FS+ G VY Sbjct: 542 TLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RGK ++N+ L + E+I I+ + N ++ AT G V++ Sbjct: 602 LKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSVKSFD---ENHFIFMATSLGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L++F RSG IA+ LD D ++ E ND++L + G+ V F +R GR Sbjct: 659 ALTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQM-GRA 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ LA+ QV+S+ I + Sbjct: 718 TRGVRGMKLAEDQQVLSLLIASN------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +Q ++ +E G+GKRT DFR S R +G++A VS+ N G Sbjct: 741 ---------------DQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERN--GL 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+D D+I+L++ G LIR V+EIR RAT+GV + + + E++ +E+I E+ Sbjct: 784 VVAAKLVSDEDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVET 843 Query: 901 EIVDEAEST 909 + ++ E+ Sbjct: 844 DDEEDGETE 852 Score = 68.3 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + LG VK+ L+ + RR G + + + D++ I + V+ Sbjct: 638 KSFDENHFIFMATSLGTVKKTALTEFANPRRSG--IIAINLDEGDYLIGAEITNGSNDVV 695 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + RG + + L + +++ +++ D+ + V+ Sbjct: 696 LVSNGGKAVWFDEDEVRQMGRATRG---VRGMKLAEDQQVLSLLIASNDQQT-----VMV 747 Query: 651 ATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVR 707 AT++G +R L+DF + G A+ + R+ ++ + + E++I+L T G +R Sbjct: 748 ATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIMLITTGGVLIR 807 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +S IR GR + GV I+L +G+++ + ++ D + D + + Sbjct: 808 TRVSEIREL-GRATQGVTLINLGEGEKLSGIEKIVETDDEEDGETEADNEVGGE 860 >gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591] gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591] Length = 877 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 407/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 187 LSEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L++ Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL+++++ + RRT I D+ ED I E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLISEENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ + Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GNVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DERVV ++R+ E DE Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + A G IN+ ++ ++ T++G Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTQNGFG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S + Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQVDSADQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ ++V+ + V D + I + + Sbjct: 813 SIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDELDSVVPVDGELPEEDIDEPESDDDT 872 Query: 775 LKNDS 779 ++D Sbjct: 873 PEDDE 877 >gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] Length = 898 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 388/924 (41%), Positives = 558/924 (60%), Gaps = 69/924 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NPD +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ ++ Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +G LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ R+ II +EL +VK E RR+ + D+ Sbjct: 482 IVAEYKDIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P E+ S + Y Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRSFPEDHY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+++ + VI+M + D + Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 Q +LT +E G+GKRT+ ++ R KG+ Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDA 855 Query: 888 DERVVSVERIRESEIVDEA-ESTE 910 +++ ++RI E++ D A E E Sbjct: 856 GAKLIGLQRIVENDANDGAGEDGE 879 Score = 77.9 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 13/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L+ + R+ G V + + D++ + V+ F Sbjct: 656 FPEDHYVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648 S G + + ARG +N + + + + ++ D+ + N + V Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR ++ IR GR + GV I+L G ++I + ++ DA+ S Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDAGAKLIGLQRIVENDANDGAGEDGEAEDSGGAAAE 889 Query: 766 SGDTEEITS 774 S Sbjct: 890 GPAESGDAS 898 >gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200] Length = 917 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 407/914 (44%), Positives = 567/914 (62%), Gaps = 87/914 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GERIT I+P E + Y++ AT +G V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSNGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++R GR + GVRGI L +G +V+S+ + Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + ILTV+E G+GKRT ++ +R+ K Sbjct: 757 ----------------------------PKGDGAILTVTENGYGKRTQLSEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V ND+I+L+SDKGTL+R P + I R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRE 899 A DE+VV ++RI E Sbjct: 847 ASDEKVVGLQRIDE 860 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 59/229 (25%) Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D++I+ +L A + + + + + + + N + Sbjct: 469 EHDKIIAEYEELLEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMS 528 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV------- 842 ++L +E ++T+S G+ K D++ R GKG AT V + + L+ Sbjct: 529 LEDLINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDT 588 Query: 843 -------------------------------------------AVFPVND---NDQIILV 856 A+ PV + + II+ Sbjct: 589 ILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMA 648 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + GT+ + + R G++ + ++++ V+ + DE Sbjct: 649 TSNGTVKKTALTAYS-NPR-ANGIIAVNLKDGDQLIGVDI---TNGDDE 692 >gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 879 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 409/903 (45%), Positives = 573/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 >gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 872 Score = 934 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 393/906 (43%), Positives = 550/906 (60%), Gaps = 68/906 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E K VS+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Sbjct: 2 EAFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + H LL D+ K+TVDF PNYDGS +EP+V+ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMARIGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D C+A+++N ++ +D L++++ GPDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLGEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +RG +H E + I++ E+PYQVNK +LEKI ELV EKRI I+DLRDESD+ G Sbjct: 242 MRGRTHFEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKRG A+V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R E Sbjct: 302 MRVVIELKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT + L KAR+RAH+ GLA+A+ N+DE++ +I+ SP P ARR LM R W + + Sbjct: 362 VLTRRTVFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTV 421 Query: 428 KDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 +++ + G LSE Q +AILELRL RLTGL RD I + Sbjct: 422 AEMLQRAALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGE 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I + +DIL+ R+ +I +EL +++ + RR+ IV D+ ED I DMV Sbjct: 482 LLARIADLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY+K PL+ YRAQRRGG+G+ M+ +DFV LF+ +TH +L F++ G VY Sbjct: 542 VTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P G+ +RGK ++N+ +GE+I+ I+P E ++ Y+ T G V++ Sbjct: 602 WLKVYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFT---DDRYIFMCTAQGTVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LSDF ++G IA+ LD D ++ E D++L + G+ V F +R GR Sbjct: 659 TPLSDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ LA QV+S+ + + Sbjct: 718 TARGVRGMRLADQQQVLSLLVADN------------------------------------ 741 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +Q +L +E GFGKRT DFR S R +G+ A S+ N G Sbjct: 742 ----------------DQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERN--G 783 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +VA V D D+I+L++ G LIR V EIR RAT+GV + + E++ +E+I E Sbjct: 784 RVVAARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGEKLAGLEKIVE 843 Query: 900 SEIVDE 905 +E E Sbjct: 844 TEDDAE 849 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 14/243 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PLS + R+ G V + DED + I + V+ Sbjct: 641 FTDDRYIFMCTAQGTVKKTPLSDFSNPRKAG--IIAVALDDEDVLIGAEITNGTQDVVLV 698 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + ARG + + L +++ +++ D+ + V+ AT Sbjct: 699 SDAGKAVWFDEEDVRPMGRTARG---VRGMRLADQQQVLSLLVADNDQQT-----VLVAT 750 Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R L+DF G IA+ +++ E++I+L T G +R Sbjct: 751 ENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGRVVAARLVRDEDEIMLITTGGVLIRTR 810 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + IR GR + GV I+L G+++ + ++ + D + + D Sbjct: 811 VREIREL-GRATQGVTLIALDAGEKLAGLEKIVETEDDAEIADLVEQPGEPAAGGQYADP 869 Query: 770 EEI 772 E Sbjct: 870 GEE 872 >gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] Length = 906 Score = 934 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 451/889 (50%), Positives = 628/889 (70%), Gaps = 8/889 (0%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Sbjct: 4 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA R Sbjct: 64 PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN Sbjct: 124 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+ Sbjct: 184 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE +R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R Sbjct: 244 MRGRAEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVR 303 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ Sbjct: 304 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 363 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM W A +I Sbjct: 364 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILP 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ L+DD + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+ Sbjct: 424 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLN 482 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL SR+RLL I+K EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+K Sbjct: 483 ILGSRTRLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 542 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RVPLS YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ Sbjct: 543 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 602 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +PQ +G+ ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L F ++ Sbjct: 603 NPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKKLQ 662 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIA++LD D+++ V+ C ++ ILL TK G+ +RF + ++RV R S GVRG+ L Sbjct: 663 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKL 722 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AK D VISM ++ + ++R Y+ QR I+ N + +++ Sbjct: 723 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 777 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV Sbjct: 778 ILEMAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 835 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +D+++L+++ G LIR + +RI R T GV++F E+VVSV I Sbjct: 836 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIA 884 >gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] Length = 861 Score = 934 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 391/902 (43%), Positives = 563/902 (62%), Gaps = 68/902 (7%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D+ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +W Sbjct: 2 TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR LI+GQGNFGSVDGD AA Sbjct: 62 NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ + AH LL D+ K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMA Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DGC+AV+ + DI +D L++II PDFPT +I G G+K Y TGRG Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241 Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +++R +H E GDR+ I+V E+PYQVNKA +LE+I ELVR+K+I I+DLRDESD+ Sbjct: 242 VIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKS 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L IL+ F+ R Sbjct: 302 GMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRR 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S P A+ LM+R W + Sbjct: 362 EVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPL 421 Query: 427 IKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++++ +D + LSEVQ +AILELRL RLTGL +D I E Sbjct: 422 VEEMLARVDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYR 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + I + +DIL+ R+ II EL ++K + RR+ I D+ ED I +DM Sbjct: 482 EIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLITPQDM 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+K P+ YR+QRRGG+G+ +D+DF+ LF+ +TH VL FSS G Sbjct: 542 VVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFGRC 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ LP G +RGK ++N+L L +GE+I ++P E ++ +V T +G V+ Sbjct: 602 YWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFR---DDQFVFMCTANGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L DF + +G IA+ LD D ++ V ++ ++L + G+ VRF + +R G Sbjct: 659 KTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAM-G 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRG+ L +G QVIS+ + Sbjct: 718 RNATGVRGMMLGEGQQVISLLVTCS----------------------------------- 742 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++Q +LT S+ G+GKRT + +FR ++R +G+ A D++ ++ Sbjct: 743 -----------------EDQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLT--DKT 783 Query: 839 G-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA V + D ++L++ G LIR V+E+R R+ +GV + + + E+++S+ ++ Sbjct: 784 GLKLVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKLISLVKV 843 Query: 898 RE 899 E Sbjct: 844 AE 845 >gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 879 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 410/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTG+ + + +E +L EI Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTSLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 >gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] Length = 898 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 456/899 (50%), Positives = 638/899 (70%), Gaps = 9/899 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYD+L RMAQ +SLRL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ I Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ R Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLLNKARD+AH+L+GL IAV+N+DE++RII+ + + A++ELM RSW A I L+ Sbjct: 366 TIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLVK 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+DD + + +E+Q +AILE+RL RLT + ++ + EL +L EI E ++IL Sbjct: 426 LVDDKAM-LNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILG 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVP Sbjct: 485 SRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQ 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I SG Sbjct: 605 GKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSSG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK Sbjct: 665 KIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKE 724 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM ++ ++ ++R Y A+R I+ E N + ++ + + Sbjct: 725 DSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEE-----FNLEELGVTLTADSILK 779 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+ Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKIDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910 ++L+++ G LIR + +RI R T GV++F E+VVSV I E SE +++E E Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETSESAEDSELEE 896 >gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] Length = 872 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 409/922 (44%), Positives = 567/922 (61%), Gaps = 76/922 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M WN+ Sbjct: 2 DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGS+DGD AA R Sbjct: 62 PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL K A +L D+ K+T+DF PNYDG +EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTECRLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ G + ++ +PD +D L++II PDFPTG +I G TG++ Y TGRG +V Sbjct: 182 IPPHNLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIYGVTGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ R+ I++ E+PYQVNK +LE+IAE VREK++ I+D+RDESD+ G Sbjct: 242 MRARTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A+V+LN L++ T LQ F +NMVAL +P+ L +L+ F+A R EV Sbjct: 302 RVVIELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P AR+ELM RSW++S ++ Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y I SDG LSE Q IL++RL RLTGL +D I Sbjct: 422 SMLERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I E LDIL+ R+L II EL +V E RR+ I D+E Sbjct: 482 LNEYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRSEIELNASDLET 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY+K PLS YRAQ+RGG+GR +++D+V LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS G +Y KVW +P GS +RGK ++N+ L E+IT I+P E+ + N Y+ Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENHYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ L+DF ++G IA+ LD D ++ +D++L + G+ VRF Sbjct: 662 FMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GV+G++L +VI++ + Sbjct: 722 DENDVRPM-GRTARGVKGMNLEDEQKVIALLVAGD------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + Q +LT +E GFGKRT ++ R KG+ Sbjct: 756 ---------------------------ENQSVLTATENGFGKRTPIAEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V++ND+I+L++ G LIR V+EIR RAT+GV + S + Sbjct: 789 AIQTSERN--GKVVAATLVSENDEIMLITTGGVLIRTRVSEIREMGRATQGVTLISIEEG 846 Query: 889 ERVVSVERIRESEIVDEAESTE 910 + ++RI ES+I D E +E Sbjct: 847 TTLSGLQRILESDIEDVPEGSE 868 >gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103] gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103] gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355] Length = 880 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 187 LREVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATASGTVKKTGLQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D+V+S+ + A Sbjct: 723 GIKLAQNDRVVSLIVPREEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D+DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 86/222 (38%), Gaps = 15/222 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L + R G + +RD+D + + + + + + FS+ G V + Sbjct: 650 TASGTVKKTGLQEFSRPRSAG--IIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L Q +R+ +++ ++ T++G +R Sbjct: 708 ESAVRAMGRTA---SGVRGIKLAQNDRVVSLI------VPREEGAILTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSEV-SIVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 N+ GV I A+ + V+ + V + + Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGD 859 >gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] Length = 893 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 401/916 (43%), Positives = 570/916 (62%), Gaps = 78/916 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A I N DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIA+LV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +R A A+V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GL++A+AN+DE++ +IR +P P A+ L+ R W+ + +++ Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL RLTGL I +E +L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + ILS+ RL+ +I++EL +D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK L+ Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714 + +G IA+ L D ++ VE E+DI+L +K G+ VRF +R Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVKGGVR 722 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRG+ L KGDQV+S+ + Sbjct: 723 PM-GRTASGVRGMKLVKGDQVVSLIV---------------------------------- 747 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + ILTV+E G+GKRT ++ +R+ +G+ + VS+ Sbjct: 748 -------------------PKTDGDILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSE 788 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +V ++ D+ +++++ TL+R V+E+ R T+GV + T++ E+VV + Sbjct: 789 RN--GKVVGAVQADEGDEFMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEGEKVVGL 846 Query: 895 ERIRESEIVDEAESTE 910 +RI E + D + + Sbjct: 847 QRIEELDEADLPQDDD 862 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 62/439 (14%), Positives = 151/439 (34%), Gaps = 38/439 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 ++ K LL++ + H+L + + E + N ARR + + + Sbjct: 469 EHGKILDEYKALLDEIAELIHILSNTERLMEVIREELE--MARDNFGDARRTEITAASHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y L++ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQVLTDYEAQRRGG------------KGKSATRMKDE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G V +RD+D + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFSNVRANG--LIAVNLRDDDSLIGVEITDGESD 692 Query: 589 VLFFSSLGFVYKEKVWRL--PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 ++ FS G V + + G+ + + + S +G ++ + Sbjct: 693 IMLFSKSGKVVRFNEKPIVDDEGNVKGGVRPMGRTASGVRGMKLVKGDQVVSLIVPKTDG 752 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703 ++ T++G +R +LS++ +R+ + + + +++ + ++ ++ T Sbjct: 753 DILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSERNGKVVGAVQADEGDEFMMITNAA 812 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VR +S + GRN+ GV I ++G++V+ + + D + + Sbjct: 813 TLVRTRVSEV-SQVGRNTQGVTLIRTSEGEKVVGLQRIEELDEADLPQDDDVSSEDQSSV 871 Query: 764 LISGDTEEITSLKNDSSVE 782 + + I + D + + Sbjct: 872 ESTSTSTVIDTDSTDVNTD 890 >gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] Length = 884 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 394/922 (42%), Positives = 568/922 (61%), Gaps = 76/922 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ Sbjct: 2 DQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGSVDGD AA R Sbjct: 62 PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL K A+ +L D+ KDTVDF PNYDG +EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG + V+ N D +D L+EII PDFPT +I G +G+++ Y TGRG IV Sbjct: 182 IPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGRIV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G Sbjct: 242 MRAKTHFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EV Sbjct: 302 RVVIELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L +AR+R HVL GLA+A+AN+D+ + II+ +P P A+ ELM R+W++S ++ Sbjct: 362 VTRRTIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + Y I DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLVRTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I + LDILS R+ II EL + K E RR+ I D+ Sbjct: 482 VNEYKEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRSYIEHNATDLGT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY+K P+S YR+Q+RGG+G+ + +D+D++ LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G +Y KVW +P GS +RGK ++N+ L GE++T I+P ++ S + Y+ Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDRYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +T G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI++ + + Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++Q +LT +E G+GKRT ++ R KG+ Sbjct: 756 ---------------------------EQQSVLTATENGYGKRTPITEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V +D+I+L++ G LIR V EIR RAT+GV + + Sbjct: 789 AIQTSERN--GRVVAATLVEPSDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846 Query: 889 ERVVSVERIRESEIVDEAESTE 910 ++ ++RI E ++ + ++ + Sbjct: 847 TKLSGLQRIVEPDVEEGDDAVD 868 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 14/239 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + LG VK+ PLS + R+ G + + DF+ + V+ F Sbjct: 655 FPEDRYIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG +N L +G+++ ++ V+ AT Sbjct: 713 SDSGKAVRFDENDVRPMGRTARGVRGMN---LEEGQQVIALLVAEN-----EQQSVLTAT 764 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ +++ ++I+L T G +R Sbjct: 765 ENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPSDEIMLITTGGVLIRTR 824 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ IR GR + GV I++ G ++ + ++ D + + A + D Sbjct: 825 VAEIREM-GRATQGVTLIAVEDGTKLSGLQRIVEPDVEEGDDAVDATDAPADDTPAADD 882 >gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] Length = 918 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 481/923 (52%), Positives = 631/923 (68%), Gaps = 19/923 (2%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + ++E T SV+I EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPETPENDDEIPATRPVYDGPSVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRI++ M + G+ K Y K A+ G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G Sbjct: 61 RRIIYSMYEKGITHEKAYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD AA RYTE RL K A F+ DL K+TVDF NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+ + L+E I GPDFPTG ++LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS+++R + +E+ DR IV+ EI YQVNK+ M+EKIAE VREK+I Sbjct: 241 RSGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F NM+ALNG +PE+ T Sbjct: 301 DGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DEVV IR S + A Sbjct: 361 LRKFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A I I LIDD ++T DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 REKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE L+IL SR R++GII EL VKD+ PRRT IV+ DM+DED I Sbjct: 481 TDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL +R+QRRGGKG SG+ ++ED VT LF+ +THT +LFF+ Sbjct: 541 AREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP G ++GKA++NIL + G I IMP DE W++L VVFAT Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRNKLSDF + R+GKIAMK + +++ + ++D++L T G+ +RFP Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPA 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R SVGVRGI L D+V+SM+I+ H DA +ER Y+K RR ++G + Sbjct: 721 TDVRVFNSRASVGVRGIKLNGDDEVVSMSIIRHFDASSEERTAYLK----MRRAMAGLAD 776 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + ++++ + N S+ER E+ E +LT++EKG GK +SS+D+ + R G G+ A Sbjct: 777 DAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAM 836 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K G +VA FPV +DQI+L + KG IRVPV I SR+ GV +F T + E Sbjct: 837 D--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEV 894 Query: 891 VVSVERIR---ESEIVDEAESTE 910 VVSV I + DE + E Sbjct: 895 VVSVAWIADQGDETGDDEIATPE 917 >gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] Length = 908 Score = 933 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 471/914 (51%), Positives = 630/914 (68%), Gaps = 15/914 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + +++ +T SV+I E++ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPETPENDDDLPVTRMAHAGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+GM + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYGMYEAGNTHDKSYRKSARSVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD AA RYTE R+ K A ++L D+ KDTVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDRAAAMRYTEVRMDKPAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D +A+IDNPD+ + ++E I PDFPTG +ILG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLILG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS+++R + +E+ DR IV+ EIPYQVNK+ M+++IAE R+KRI Sbjct: 241 RSGARKAYLEGRGSVIVRAKTVVEEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ T Sbjct: 301 EGIAHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L AFV FREEV+ RRT + L KAR+RAH+L GLA+AV N+DEVV IR S + A Sbjct: 361 LRAFLVAFVDFREEVIARRTAFELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LM R W A+ I + I LIDD ++T DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 RHTLMTRRWPAAAILEYIKLIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +I+E L+IL SR R+L II+ EL V+D+ PRRT+IV+ DM+DED I Sbjct: 481 TDELQELAGKIREYLEILGSRDRILQIIRDELTEVRDQFAVPRRTQIVDWSGDMDDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +EDMVVTV+ GY+KR L+ +RAQRRGGKG S + ++ED VT LF+ +THT +LFF+ Sbjct: 541 EQEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G YK K WRLP+GS A+GKA++NIL + QG + IMP E+ W++L +VFAT Sbjct: 601 TDGMAYKLKTWRLPLGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISA 712 G+VRRN LSDF + +GKIAMKL +++ C+ ++D++L T G+ +RFP + Sbjct: 661 AGDVRRNALSDFTNVKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTD 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +RVF GR+S GVRGI L D+V+SM+I+ H +A+ +ER Y+K A L + Sbjct: 721 VRVFKGRDSTGVRGIRLQGDDKVVSMSIIRHFEAEAEERAAYLKMRRAMAGLA-----DD 775 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++++ + G IS ER + E ILT+S KG GK +SS+D+ + R G G+ A D Sbjct: 776 AEVEDEEAAPGQISPERYAAMSAAENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMD- 834 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 K G LV FPV +DQI+LV+ G IRVPV I SR+ GV +F T K E VV Sbjct: 835 -KAMRGGPLVTSFPVEMSDQIMLVTSTGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVV 893 Query: 893 SVERIRESEIVDEA 906 SV I + ++ Sbjct: 894 SVAWIADQGDDEDD 907 >gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 900 Score = 933 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 398/921 (43%), Positives = 570/921 (61%), Gaps = 62/921 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLRKIAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ C+ V+ NP+ +D L+EII PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLDEVISACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E R+ I+V E+PYQVNK +LE+IAELV EK++ I+DLRDESD+ G Sbjct: 242 MRAKTHFEDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+DE + II+ + NP A++ELM ++W++S ++ Sbjct: 362 VTRRTIFELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVR 421 Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528 NE + EI + LD+L+ R+ +I+ EL V+ E DT RR+ I ++ Sbjct: 482 VNEYKEVMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELF 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +DMVVT+S+ GY+K PLS YRAQ+RGG+G+ ++ED++ LF+ +TH Sbjct: 542 TEDLITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDI 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L FS G +Y KVW +P GS +RGK ++N+ L +GE+IT I+P ++ YV Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGY---QDDHYV 658 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ +LSDF ++G IA+ L+ D ++ ++D++L + G+ VRF Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L G QVI+M + A+ E + +A Sbjct: 719 DENDVRPM-GRTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAAIPSS---- 773 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 +LT +E G+GKRT ++ R KG+ Sbjct: 774 -------------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMI 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ N G +VA V+ DQI+L++ G L+R V+EIR RAT+GV + + + Sbjct: 803 AIQTTERN--GKVVAAALVSPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEG 860 Query: 889 ERVVSVERIRESEIVDEAEST 909 R+ ++RI ES+ DE + Sbjct: 861 TRLSGLQRIAESDSDDETDEE 881 Score = 75.6 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ LS + R+ G V + + DF+ I V+ F Sbjct: 652 YQDDHYVFMATSLGTVKKTRLSDFSNPRKAG--IIAVDLNENDFLVGAAITDGQHDVMLF 709 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN---------ILSLNQGERITTIMPFPEDESSW 643 S G + + ARG +N +L + + Sbjct: 710 SDAGKAVRFDENDVRPMGRTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAA 769 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700 V+ AT++G +R ++++ + R G IA++ ++++ + E+ I+L T Sbjct: 770 IPSSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAAALVSPEDQIMLIT 829 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR +S IR GR + GV I++ +G ++ + + +D+D + Sbjct: 830 TGGILVRTRVSEIREM-GRATQGVTLINVDEGTRLSGLQRIAESDSDDETDEEGDASAEP 888 Query: 761 QRRLISGDTEEI 772 S + Sbjct: 889 ADDTNSDVAGDA 900 >gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 878 Score = 933 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + NE L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 64/432 (14%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR + + + N+ Sbjct: 470 EHEKLLNEYKELLEQIAELLHILGSADRLMEVIREEMELIRD----QFGDERRTEITANS 525 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +DI + + S L++ + + + D I L + Sbjct: 526 ADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 Query: 481 GIE---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 + + + G + ++++ R T I+ E + Sbjct: 586 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN 645 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 V + G VK+ L+ + R G + DE DL S V+ Sbjct: 646 -------VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVML 696 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G V + K + A G + + L +++ +++ ++ Sbjct: 697 FSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTV 747 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R ++ +R+ + + + ++ + I++ T G VR Sbjct: 748 TQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRT 807 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +S I GRN+ GV I A+ + V+ + V D + + Sbjct: 808 RVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEA 866 Query: 769 TEEITSLKNDSS 780 + + Sbjct: 867 ESDDDVADDADE 878 >gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] Length = 913 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 489/888 (55%), Positives = 648/888 (72%), Gaps = 5/888 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + + + Y KC Sbjct: 5 DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKC 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+G++HPHG+A++Y AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE + Sbjct: 65 ARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + AA LL D+ KDTVDF+PNYD EPVVL AR PN+LVNG GGIAVGMATNIP HN Sbjct: 125 MAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D VA++D+PD+ DAL++I+ GPDFPTG I+GRT +NA GRGS+++RG + Sbjct: 185 LREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGKA 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ DR+ I++TE+P+QVNK ++E+IAE+VREKR+ IAD+RDESDR G R+VIEL Sbjct: 245 SIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIEL 304 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR AS DVILNQLYRYT+LQS F VNM+ALN +PE+ L +L+ F+ FREEVVVRR K Sbjct: 305 KRDASGDVILNQLYRYTALQSSFGVNMLALNHGRPEQMGLRKLLELFLDFREEVVVRRVK 364 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDR HVLVGLA+AVAN+DEV+ IIR S +P AR L ++W D+ L++LI Sbjct: 365 FELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALVELI 424 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D + + L++ Q RAIL L L+RLTGLGRDDI E +L I+ L ILS R Sbjct: 425 ADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTILSDR 484 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L II+++LL VKD+ RRT I EG +MEDED I REDMVVTV+H GYVKRV L+ Sbjct: 485 KNVLAIIREDLLLVKDQFGVDRRTLIGEGDAEMEDEDLIPREDMVVTVTHSGYVKRVALN 544 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKGRSG+ M+DED VT +F STHT VLFF++ G YK K WRLP+G+PQ+R Sbjct: 545 AYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSR 604 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA +N+L + G+ I ++P PEDE++W + ++FAT+ G+VRRNKLSDF +NR+GKI Sbjct: 605 GKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATVNRAGKI 664 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL+ D ++ V CT E+D+LLTT LG+ +RF +RVF GR+S GVRGI L GD Sbjct: 665 AMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIRLQDGDT 724 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----SLKNDSSVEGNISEERC 790 VISMAI+ DA +ER Y+KH +A R+ ++G E ++ + + +S ER Sbjct: 725 VISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAALSVERI 784 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 EL EQFILTV+E GFGKR+S+Y++R + R G+G+ A + L A FPV ++ Sbjct: 785 AELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGT-RLAAAFPVEES 843 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D ++LV+D G +IR PV+++RI R+++GV IF T KDE+VVSVER+ Sbjct: 844 DDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTIFRTGKDEKVVSVERLA 891 >gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163] gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163] Length = 879 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 409/903 (45%), Positives = 572/903 (63%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ DI L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 LTEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 427 AGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847 Query: 906 AES 908 + Sbjct: 848 LDG 850 >gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 878 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + + Sbjct: 873 VDDADE 878 >gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 878 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193] gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193] Length = 915 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 471/915 (51%), Positives = 636/915 (69%), Gaps = 17/915 (1%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 MT+ + + +E +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MTDTPETPENADENFPQRATYDGPTVSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD AA RYTE R+ K A F+L+D+ K+TVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D +A+I++PD+ + L++ + GPDFPTGA++LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGAIMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + +E+ DR IVV E+PYQVNKAAM+EKIAE VREK+I Sbjct: 241 RSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ T Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DE+V IR S + A Sbjct: 361 LRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A I I LIDD ++T DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 REKLMTRRWPAQPILQYIALIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE L+ILSSR R++GII EL V+D+ PRRT IV+ DM+DED I Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMGIICDELREVRDQFAVPRRTEIVDWSGDMDDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL +RAQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF+ Sbjct: 541 EREDMVVTVTSGGYIKRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP S +GKA++NIL + G I IMP + W +L +VFAT Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRN+LSDF + +GKIAMK + ++++ C++++D++L T G+ +RFP Sbjct: 661 AGTVRRNRLSDFTNVKSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPT 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF RNSVGVRGI L++G +V+SM+++ H DA+ ER ++K ++ + + Sbjct: 721 TDVRVFNSRNSVGVRGIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSELGSDVSE-D 779 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + + EG +SEER QE+ ++T+++ G G TS++D+R+S R G+G+ A Sbjct: 780 DAVAEVAEEIEEGALSEERYQEMLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAM 839 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 G +VA FPV DQI+L + KG IRVPV+ I SR+ GV +F+T K E Sbjct: 840 K------GGEIVATFPVELGDQIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEE 893 Query: 891 VVSVERIRESEIVDE 905 VVSV I ES DE Sbjct: 894 VVSVAWIAESGEDDE 908 >gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3] gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3] Length = 897 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 407/925 (44%), Positives = 564/925 (60%), Gaps = 87/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+I++P + ++ LME I GPDFPT A++ GR GI +AY TGRG V+R Sbjct: 186 NLTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAIVNGRKGIIDAYKTGRGRAVMRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ + W +K +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + D +L+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEVIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L ILSS RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHL Sbjct: 486 ALLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L++GERIT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSEGERITAILPVREYA---DDKYIIMATSHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +DI+L + G+ VRF A Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARNAETGEVKIDPE 722 Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R GR + GVRGI L G V+S+ + Sbjct: 723 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ++ ILTV+E G+GKRT+ ++ +R K Sbjct: 757 ----------------------------PKEDGAILTVTENGYGKRTALSEYPAKSRGTK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V DND+I+L+SDKGTL+R P + R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 A+DE+VV ++RI E + + E Sbjct: 847 AEDEKVVGLQRIDEIQDEEVELDEE 871 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 92/248 (37%), Gaps = 17/248 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I + ++ F Sbjct: 639 YADDKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGNDDIMLF 696 Query: 593 SSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDES 641 S+ G V + G + + +++L R T + Sbjct: 697 SNEGKVVRFNEKARNAETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILL 698 + ++ T++G +R LS++ +R K + + + + ++I+L Sbjct: 757 PKEDGAILTVTENGYGKRTALSEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGDNDEIML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + + GRN+ GV I A+ ++V+ + + + E + Sbjct: 817 ISDKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQDEEVELDEEGNPI 875 Query: 759 SAQRRLIS 766 ++ Sbjct: 876 VSEETTEE 883 >gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] Length = 883 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 374/910 (41%), Positives = 556/910 (61%), Gaps = 65/910 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + I + LDIL+ R+ II EL +++ E RR++I +++ ED I Sbjct: 482 VQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KV+ +P GS +RG+ ++N+ L+ GE+I I+P + + ++ AT Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFD---AEHFIFMATA 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + + Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L + VI+M + A+ E Sbjct: 719 RPM-GRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V+ +D+I+L++ G LIR V EIR RAT+GV + + + ++ Sbjct: 795 ERN--GRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 852 Query: 894 VERIRESEIV 903 ++RI E++ Sbjct: 853 LQRIVETDAD 862 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 13/220 (5%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + + G VK+ L+ + R+ G + + D++ + V+ FS Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVVFA 651 G + + QARG +N L++ + + ++ E + + V+ A Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMN---LDESQTVIAMLVAPAETAEQTEAGSPGSVLTA 764 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R ++++ + R G IA++ +++ + +++I+L T G +R Sbjct: 765 TENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRT 824 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 ++ IR GR + GV I++ +G ++ + ++ DAD Sbjct: 825 RVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVETDADN 863 >gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 878 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAENDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472] gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472] Length = 866 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 391/920 (42%), Positives = 566/920 (61%), Gaps = 74/920 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+++ + + +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDNLFAKET------LPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WN+ Y K ARI G+V+GKYHPHG+ A+YD + R+AQD+SLR L++GQGNFGSV Sbjct: 55 HELSNDWNRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSV 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ + AH LL D+ K+TVDF PNYDGS EP++L A+ PN+LVNG Sbjct: 115 DGDNAAAMRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD C+A++ N D+ +D L++II PDFPT +I G G+K Sbjct: 175 GIAVGMATNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGTAGVKEG 234 Query: 241 YATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG +++R +H E GDRE I+V EIPYQVNKA +LE+I+ELVR+K+I I+DL Sbjct: 235 YRTGRGRVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDL 294 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIELKRG +V+LN L++ T LQ F +NMVAL +P L IL+ Sbjct: 295 RDESDKSGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQPRLLNLKQILE 354 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S P A+ LM Sbjct: 355 EFLRHRREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMA 414 Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471 R+W +S ++D++ ++ + +LS+ Q +AIL++RL RLTGL +D Sbjct: 415 RAWRSSLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQD 474 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + I + LDIL+ R+ II +EL +++ + PRR+ I D+ ED Sbjct: 475 KIVGEYREIMDVILDLLDILAKPERISQIIGEELTAIRAQFGDPRRSEIEPYGGDINIED 534 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GY+K P+ Y +QRRGG+G+ +D+DF+ LF+ +TH VL Sbjct: 535 LITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLC 594 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G Y KV+ LP G Q+RGK ++N+L L +GE+I ++P E ++ +V Sbjct: 595 FSSRGRCYWRKVYDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKEFR---DDQFVFMC 651 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T +G V++ L DF + +G IA+ LD D ++ V ++ I+L + G+ VRF + Sbjct: 652 TANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSET 711 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GVRG+ L QVIS+ + Sbjct: 712 DVRPM-GRNATGVRGMMLGDDHQVISLLV------------------------------- 739 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT S+ G+GKRT DFR ++R +G+ A D Sbjct: 740 ---------------------SNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIAMD 778 Query: 832 VSKINEIG-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 ++ ++ G LVA V + D I+L++ G LIR V E+R R+ +GV + + + E+ Sbjct: 779 LT--DKTGLKLVAASLVEETDDIMLITTGGVLIRTKVAEVRETGRSAQGVRLINLDEGEK 836 Query: 891 VVSVERIRESEIVDEAESTE 910 ++ +E + ESE TE Sbjct: 837 LIGLEIVAESEAECAEGETE 856 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 15/236 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL + R G + D L ++ F Sbjct: 642 FRDDQFVFMCTANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVAL--THGDDQIMLF 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + A G + + L ++ +++ S+ V+ A+ Sbjct: 700 SDAGKAVRFSETDVRPMGRNATG---VRGMMLGDDHQVISLL-----VSNSEQQMVLTAS 751 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLGQCVRF 708 G +R + DF + +R + + +D D+ ++ + +DI+L T G +R Sbjct: 752 DGGYGKRTCVGDFRRTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDIMLITTGGVLIRT 811 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 ++ +R GR++ GVR I+L +G+++I + IV ++A+ E Q Sbjct: 812 KVAEVRE-TGRSAQGVRLINLDEGEKLIGLEIVAESEAECAEGETEGGDAPEQGEA 866 >gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby] gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Corby] gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] Length = 863 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 409/894 (45%), Positives = 563/894 (62%), Gaps = 67/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRTSRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K V S+ +V Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIV 841 >gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] Length = 935 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 498/902 (55%), Positives = 660/902 (73%), Gaps = 8/902 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 +GI +SI E++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G +KKYVK Sbjct: 29 QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I G+VMG+YHPHG++AIYDAL RMAQ +S+ LLL++GQGNFGSVDGDPPAA RYTE Sbjct: 89 SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ KAA L+ D+ K T+DF NYDGS +EP VL +R PN+LVNG GGIAVGMATNIP H Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VD C+AV+D+P + ++ L+ I+ GPD+PTG ILGR+G + A TGRGS+V RG Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEILGRSGARLALMTGRGSVVTRGK 268 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE DRE IV+TEIPYQVNK++M+E IAELVR+KRI I+D+RDESDRQG RVV+E Sbjct: 269 ASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVVE 328 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR AS DVILNQLYR+TSLQ+ F VNM+AL+ +P++ L +L F+ FRE+VVVRR Sbjct: 329 LKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGRPQQMGLRRLLDIFLDFREDVVVRRI 388 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ LNKARDR HVLVG+ IAVAN+DEV+ IIR S +P AR L ++W + D+ LIDL Sbjct: 389 RFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLIDL 448 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 I D + + L++ Q RAIL L L+RLTGLGRD+I +E +L I L+ILSS Sbjct: 449 IADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEILSS 508 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ I+++EL+ VK + PRRT+I E D+EDED I REDMVVTV+H GYVKR PL Sbjct: 509 RERIMAIVREELVEVKAQFAVPRRTQIAESEGDIEDEDLIPREDMVVTVTHSGYVKRTPL 568 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S+YR Q RGGKGRSG+ M+DED + ++ STH +LFFSS G +K KVWRLP+G+PQ+ Sbjct: 569 SMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKVWRLPVGNPQS 628 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GKA +N+L + G+ I+ I+ PE+E+ W+ L ++FAT+ G++RRNKLSDF+ +NR+GK Sbjct: 629 KGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNVNRAGK 688 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKL+ D I+ V C+ + D+LL+T G+ +RF + +RVF GR+S GVRG+ L D Sbjct: 689 IAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVRLLGDD 748 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEE 788 +VISMAI+ +DA ER Y+K SA+R + G ++ + ++S +++E Sbjct: 749 KVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIAELTDE 808 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R ELK +E+FILT+S+ GFGKR+SS++FR + R G+GI A D+SK G L A FP+ Sbjct: 809 RYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKR--GGKLAACFPIE 866 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D I+LV+ G LIR V ++RIA R T+GV IF TA ERVVSVER+ +S DEA + Sbjct: 867 ATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRTAGGERVVSVERLPDS-GEDEAGT 925 Query: 909 TE 910 E Sbjct: 926 DE 927 >gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 905 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 454/896 (50%), Positives = 635/896 (70%), Gaps = 8/896 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEVMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ I Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ R Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLLNKARDRAH+L+GL IAV+N+DE++RII+ S + A++ELM R W A +I L+ Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVK 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+DD + + G +EVQ +AILE+RL RLT + ++ +L +L EI E L+IL Sbjct: 426 LVDDKAM-LNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILG 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+RLL I+K+EL+ VK+E TPR T I G D + ED I E+MVVTV+ GY+KRVP Sbjct: 485 SRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIKRVP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQ 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ ++NIL L + E IT IMP PE++ WNNL ++FAT GN+RR+ L DF +I +G Sbjct: 605 GKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQSNG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA++LD D+++ V+ C ++ ILL TK+G+ +RFP+ ++RV R S GVRG+ LA+ Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLARE 724 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM ++ + ++R Y+ +R I+ N + ++ + E Sbjct: 725 DSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGE-----AFNPEELGVALTADSILE 779 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILTV+E GFGK++S+Y +RI++R G GI D++ ++ G +V V PV +++ Sbjct: 780 MANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDNE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++L+++ G LIR + +RI R T GV++F + E+VVSV I ES +E + Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAESTEGEEDSA 893 >gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032] gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032] Length = 878 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 573/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ + A Sbjct: 723 GIRLGEGDSVVSLIVPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V+ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 71.0 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 139/430 (32%), Gaps = 35/430 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL + V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGVDL--TAGKDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I R+ ++ AT+ Sbjct: 699 AQGKVVRFKEDAVRPMGRTATGVRGI---------RLGEGDSVVSLIVPRGEGAILTATQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ K + + D + + I++ T G VR + Sbjct: 750 NGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAPETDV 868 Query: 771 EITSLKNDSS 780 + + + Sbjct: 869 DDDAADDADE 878 >gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894] gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894] Length = 878 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 407/905 (44%), Positives = 573/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ + A Sbjct: 723 GIRLGEGDSVVSLIVPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V+ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 140/430 (32%), Gaps = 35/430 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL + V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGVDL--TAGKDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I R+ ++ AT+ Sbjct: 699 AQGKVVRFKEDAVRPMGRTATGVRGI---------RLGEGDSVVSLIVPRGEGAILTATQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ K + + D + + I++ T G VR + Sbjct: 750 NGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDDIAPETDA 868 Query: 771 EITSLKNDSS 780 + ++ + Sbjct: 869 DDDAVDDADE 878 >gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC] gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601] gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC] gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601] Length = 896 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 388/924 (41%), Positives = 560/924 (60%), Gaps = 78/924 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 19 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 79 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL +R PN+LVNG GIAVGMATN Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVV 258 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G Sbjct: 259 MRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 318 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 319 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREV 378 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ ++ Sbjct: 379 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 438 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + + G LS+ Q + IL++RL RLTGL +D Sbjct: 439 EMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDK 498 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I+ LDIL+ +R+ II +EL +++ E RR+ I D+ Sbjct: 499 IVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLS 558 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 559 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 618 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P E S + Y Sbjct: 619 ILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRY 678 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F ++G IA+ LD D ++ E+D++L + G+ VR Sbjct: 679 VFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVR 738 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GV+G+ L G VI+M + Sbjct: 739 FDENDVRPM-GRNARGVKGMQLEDGQSVIAMLVAED------------------------ 773 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 774 ----------------------------ENQSVLTATENGYGKRTSITEYTRHGRGTKGM 805 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + Sbjct: 806 IAIQQSERN--GRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 863 Query: 888 DERVVSVERIRESE-IVDEAESTE 910 ++ ++RI E++ EA+ + Sbjct: 864 GAKLSGLQRIVENDANTAEADGAD 887 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+ G V + + D++ + V+ F Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDYLIGAALTDGEHDVMLF 730 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + + + + M ED N V+ AT Sbjct: 731 SDSGKAVRFDENDVRPMGRNARGVKGMQL----EDGQSVIAMLVAED----ENQSVLTAT 782 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ +++ +++I+L T G VR Sbjct: 783 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTR 842 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +S IR GR + GV ISL +G ++ + ++ DA+ E +A Sbjct: 843 VSEIREL-GRATQGVTLISLDEGAKLSGLQRIVENDANTAEADGADTAPAAD 893 >gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] Length = 904 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 407/905 (44%), Positives = 560/905 (61%), Gaps = 35/905 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + +G L+E+Q ILE+RL RLTGL +D + +E L Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL+SVK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P + + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYA---DGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V + DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A G +E Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGIEDENEDDSGVEEAA 757 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 N Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 758 ANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + +D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 903 VDEAE 907 DE E Sbjct: 876 EDEDE 880 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+R +S + R G+ D I + + +L T G+ Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKV 598 Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 P+ + AG N+ G I+ L G++V ++ V Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRD------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 QF+ ++ G K+T +F R Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 +G A ++ + ALV V + I+L + G +R +++R R GV Sbjct: 666 LARGKIAINLDEG---DALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722 Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910 E VVS+ + ES E E+ + Sbjct: 723 IKMPAGEEVVSL-IVAESAGGIEDENED 749 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 100/272 (36%), Gaps = 35/272 (12%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VK+ PL + + GK + + + D + + + +L F Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGLTDGQRDILLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM------------------ 634 +S G + ++ A G + + + GE + +++ Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATG---VRGIKMPAGEEVVSLIVAESAGGIEDENEDDSGV 753 Query: 635 --------PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDE 683 E + Y++ AT++G +R L D+ + R + + + + Sbjct: 754 EEAAANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGK 813 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ +++LL + G VR S I GRN+ GV I L+K +++ ++ + Sbjct: 814 LVAAVLMGSSDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDA 872 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSL 775 + + ++ + + + +E+ Sbjct: 873 SIDEDEDEVAAAAPATTDGAPAAASSEDAAQE 904 >gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424] gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus taiwanensis LMG 19424] Length = 892 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 379/922 (41%), Positives = 562/922 (60%), Gaps = 69/922 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF NYDGS +EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+A R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W+++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + EI + LDIL+ R+ II EL +++ E RR++I +++ ED I Sbjct: 482 VQEYRDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KV+ +P GS +RG+ ++N+ L++GE+I I+P + + ++ AT Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFD---AEHFIFMATA 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + + Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L +G VI+M + A+ Sbjct: 719 RPM-GRQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGVRGS---------------- 761 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 762 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 795 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + + ++ Sbjct: 796 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 853 Query: 894 VERIRESEIV-----DEAESTE 910 ++RI ES+ +E E + Sbjct: 854 LQRIVESDADNGGNGEEPEEAD 875 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 8/230 (3%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + + G VK+ L+ + R+ G + + D++ + V+ FS Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATK 653 G + + QARG +N+ + +E++ V+ AT+ Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGVRGSVLTATE 767 Query: 654 HGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++++ + R G IA++ +++ + E++I+L T G +R + Sbjct: 768 NGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRV 827 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 + IR GR + GV I++ +G ++ + ++ +DAD + Sbjct: 828 AEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADNGGNGEEPEEADG 876 >gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114] gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114] Length = 905 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 474/895 (52%), Positives = 621/895 (69%), Gaps = 8/895 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K Y K AR Sbjct: 12 SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 72 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I+ PD+ + L++ + GPDFPTG ++LGR G + AY GRGS++IR + +E Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRGGARKAYLEGRGSVIIRAKTRVE 251 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I+V EIPYQVNKA M+EKIAE VREK+I IA ++DESDR G RVVIELKR Sbjct: 252 EIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V++NQLYR+T LQ+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT YLL Sbjct: 312 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAYLL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV N+DEVV IR S + AR +LM R W A DI I LIDD Sbjct: 372 RKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALIDDP 431 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IKE L+IL SR R+ Sbjct: 432 THTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRDRI 491 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 492 MGIIADELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 551 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG SG ++++D VT LF+ +THT +LFF++ G YK K WRLP G+ ++GKA Sbjct: 552 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGARTSKGKA 611 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + QG I I+P DE W+ L +VFAT G VRRN LSDF + +GKIAMK Sbjct: 612 IVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 671 Query: 678 LDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + +++ + ++D++L T G+ +RFP +RVF R+SVGVRG+ L+ D+ Sbjct: 672 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGVKLSGHDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H DA DER Y+K +R ++ + TS ++++S IS +R E+ Sbjct: 732 VVSMSVIRHFDATADERAAYLK---MRRAMVGLTDDSETSDEDETSANATISPDRYAEMS 788 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ G GK +SS+D+ + R G G+ A D K + G +VA FPV +DQI+ Sbjct: 789 AAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWD--KRMQTGQIVASFPVEMDDQIM 846 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 L + KG IRVPV I SR+ GV +F+T K E VVSV I + D Sbjct: 847 LATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGEDDTDGED 901 >gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] Length = 879 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 564/910 (61%), Gaps = 68/910 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Sbjct: 2 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H +L+DL K+TVDF PNYDGS EP+V+ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMAKIGHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ GC+A+++NP + ++ L+ I PDFPT +I G TG++ Y TGRG ++ Sbjct: 182 IPPHNLNEVIAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVI 241 Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R +H E S R+ ++V EIPYQVNK +++EKIAELV EK+I I+D+RDESD+ G Sbjct: 242 MRARTHFEDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKRG +VILN LY+ T LQ F +NMVAL +P L +L+ F++ R E Sbjct: 302 MRIVIELKRGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W ++ + Sbjct: 362 VITRRTVYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVV 421 Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 ++++ + S LS+ Q +AILELRL RLTGL +D I E Sbjct: 422 EEMLVRAASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKD 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I + LDIL+ R+ II EL++++++ RR+ I+ ++ ED I +DMV Sbjct: 482 VMAKILDLLDILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY+K PL+ YRAQRRGG+G+ ++DEDFV LF+ +TH +L FS+ G Y Sbjct: 542 VTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ P GS +RGK ++N+ L +GERI ++P E ++ ++ AT+ G V++ Sbjct: 602 WLKVYEAPQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFA---DDKFIFMATRAGTVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LSDF ++G IA+ L D ++ VE T ++DI+L + G+ V F +R GR Sbjct: 659 TPLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ L G VIS+ + Sbjct: 718 GARGVRGMKLQAGQAVISLLVAES------------------------------------ 741 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +Q +L +E GFGKRT DFR S R +G++A S+ N G Sbjct: 742 ----------------DQQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERN--G 783 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ V+DND+++L++ G LIR V+EIR RAT+GV + S E++ +E++ E Sbjct: 784 VVIGAKLVDDNDEVMLITTGGVLIRTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAE 843 Query: 900 SEIVDEAEST 909 S E E Sbjct: 844 SVAEAEVEGE 853 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 16/250 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PLS + R+ G ++ D+D++ + + + + ++ Sbjct: 641 FADDKFIFMATRAGTVKKTPLSDFSNPRKAGIIAVDLL--DDDYLIGVELTTGQSDIVLV 698 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + ARG + + Q + + E + V+ AT Sbjct: 699 SNAGKAVWFDEEDVRPMGRGARGVRGMKL----QAGQAVISLLVAE----SDQQTVLVAT 750 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLGQCVRF 708 ++G +R L+DF + + G +K + E + + ++++L T G +R Sbjct: 751 ENGFGKRTVLADF-RHSGRGTQGVKAIADSERNGVVIGAKLVDDNDEVMLITTGGVLIRT 809 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +S IR GR + GV ISL G+++ + V + A+ + + Sbjct: 810 RVSEIRGM-GRATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVAPETGDAAPSE 868 Query: 769 TEEITSLKND 778 + ++ + Sbjct: 869 GDVASNEGGE 878 >gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2] gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2] Length = 879 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH L+ DL K+TVDF NYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ + Sbjct: 723 GIKLAEKDSVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 139/431 (32%), Gaps = 35/431 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR ARR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIR--EQFGDARRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI D Y L++ + + + D I L + Sbjct: 528 INIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAEKDSVVSLIVPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSAAEGDEDIAPEAES 868 Query: 771 EITSLKNDSSV 781 + + +D+ Sbjct: 869 DDDAAADDADE 879 >gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3] gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3] Length = 904 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 410/905 (45%), Positives = 558/905 (61%), Gaps = 35/905 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIIAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + +G L+E+Q ILE+RL RLTGL +D + E L Sbjct: 423 LGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL+SVK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P E + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V E DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A G +E Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGSEDENEDDNGVEETA 757 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 N Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 758 ANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 903 VDEAE 907 DE E Sbjct: 876 EDEDE 880 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+R +S + R G+ D I + + +L T G+ Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKV 598 Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 P+ + AG N+ G I+ L G++V ++ V Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRE------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 QF+ ++ G K+T +F R Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 +G A ++ + ALV V + I+L + G +R +++R R GV Sbjct: 666 LARGKIAINLDEG---DALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722 Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910 E VVS+ + ES E E+ + Sbjct: 723 IKMPAGEEVVSL-IVAESAGGSEDENED 749 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 29/269 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VK+ PL + + GK + + + D + + + +L F Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGLTDGERDILLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALI-----------------------NILSLNQGER 629 +S G + ++ A G I N E Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGSEDENEDDNGVEET 756 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILS 686 + + Y++ AT++G +R L D+ + R + + + ++++ Sbjct: 757 AANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVA 816 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 +++LL + G VR S I GRN+ GV I L+K +++ ++ + + Sbjct: 817 AVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSL 775 + ++ + + + +E+ Sbjct: 876 EDEDEVAVAAPAATDGAPAAASSEDAAQE 904 >gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] Length = 878 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I Sbjct: 723 GIKLAGEDKVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 141/411 (34%), Gaps = 35/411 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR ARR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDARRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G + + L +++ +++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATG---VRGIKLAGEDKVVSLI------IPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGE 859 >gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217] gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217] Length = 908 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 411/924 (44%), Positives = 570/924 (61%), Gaps = 87/924 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YDA+ R+AQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+ID P + ++ LME I GPDFPT A I GR GI +AY TGRG V+R Sbjct: 186 NLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRAVMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AILELRL RLTGL + I +E L I I Sbjct: 426 AGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIVIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL V ++ RRT I E +DM ED I ED+VVT+SH Sbjct: 486 GLLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVVTLSHT 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GERIT I+P E ++ +++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---DDKFIIMATAHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +DI+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 A+R GR + GVRGI L G +V+S+ + A Sbjct: 723 TGEEIIALRPM-GRTATGVRGIKLEDGQKVVSLIVPKGDGA------------------- 762 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ILTV+E G+GKRT ++ +R K Sbjct: 763 ----------------------------------ILTVTENGYGKRTELNEYPAKSRGTK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + V++ N GA+V V + D+I+L+SDKGTL+R P + I R T+GV I T Sbjct: 789 GVVSIKVTERN--GAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRESEIVDEAEST 909 A+DE+VV ++RI E + + ++ Sbjct: 847 AEDEKVVGLQRIEEIQTDEILDAD 870 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 102/273 (37%), Gaps = 17/273 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I ++ F Sbjct: 639 YADDKFIIMATAHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGSDDIMLF 696 Query: 593 SSLGFVYKEK-----------VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 S+ G V + G + + + +G ++ Sbjct: 697 SNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILL 698 + ++ T++G +R +L+++ G +++K+ R+ + E ++I+L Sbjct: 757 PKGDGAILTVTENGYGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGAVQVGEFDEIML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + GRN+ GV I A+ ++V+ + + D + Sbjct: 817 ISDKGTLVRTPAEGV-SIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTDEILDADGNVIV 875 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 A+ + + + ++ + + +E+ + Sbjct: 876 PAESVDGDELSTDTRATATEAPAQTDSAEDEQE 908 >gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] Length = 878 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH L+ DL K+TVDF NYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSWN ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ + Sbjct: 723 GIKLAESDSVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 68.3 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 15/227 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G I ++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATGVRGI---------KLAESDSVVSLIVPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GRN+ GV I A+ + V+ + V D + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSAAEGD 859 >gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11] gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11] Length = 913 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 484/919 (52%), Positives = 638/919 (69%), Gaps = 16/919 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + + +E +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MSDTPETPENMDENKPERPQYDGPTVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M ++G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A +L D+ KDTVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVVD +A+I++PD+ + L+E I GPDFPTG V+LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + +E+ DR IVV EIPYQVNKAAM+EKIAE VREKRI Sbjct: 241 RSGARKAYLEGRGSVIIRAKTKVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +A ++DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F NM+ALNG +PE+ T Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + A Sbjct: 361 LRRFLSSFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W ASDI I LIDD ++T+ DGT LSEVQ RAILELRL RLT +G ++ Sbjct: 421 RHKLMTRRWPASDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE L+ILSSR R+LGII EL V+D PRRT IV+ DMEDED I Sbjct: 481 TDELEELAGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVT++ GY+KR PL+ +RAQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF+ Sbjct: 541 EREDMVVTITSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP G ++GKA++NIL + G I IMP + W L V+FAT Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPIS 711 G+VRRN+LSDF + R+GKIAMKL ++++ C++++D++L T G+ +RF + Sbjct: 661 AGDVRRNRLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFRTT 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RVF R S GVRGI L D V+SM+++ H +A +ER Y+K A + Sbjct: 721 DVRVFNSRESTGVRGIRLNGDDHVVSMSVIRHFEASPEERAAYLKMRRAVAGIADDGES- 779 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++ V G IS++R E+ E ILT++ G GK +SS+D+ + R G G+ A D Sbjct: 780 ----DDEDVVAGAISQDRYAEMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMD 835 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 K GA+VA FPV +DQI+L + KG IRVP++ I SR+ GV +F+T K E V Sbjct: 836 --KAMRGGAIVASFPVEMDDQIMLATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEV 893 Query: 892 VSVERIRESEIVDEAESTE 910 VSV I E DEA+++E Sbjct: 894 VSVAWIAEQSDEDEADTSE 912 >gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 878 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 878 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 407/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 ITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH Sbjct: 487 ELLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ + Sbjct: 723 GIKLAGEDSVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 135/416 (32%), Gaps = 35/416 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + ++R RR + + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSAERLMEVIREELELVR--DQFGDERRTEITANSSD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDSVVSLIVPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R S++ +R + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAP 864 >gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] Length = 879 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 410/917 (44%), Positives = 577/917 (62%), Gaps = 81/917 (8%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LSEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFVCHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LAIA+AN+D V+ +IR + P A+ L+ + W ++ +++ Sbjct: 367 IFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLEQ 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL+ +I++ELL++K++ + RRT + E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLMEVIREELLAIKEQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S ++EDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKGKMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + L + AT G V++ KLS+F Sbjct: 607 LPEASRGARGRPIVNLLPLGQNERITAILPVREYE---DGLNIFMATASGIVKKTKLSEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712 + +G IA+ L+ DE++ V+ N+++L + G+ VRF + Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKG 723 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI L+ GD+V+S+ I Sbjct: 724 VRAM-GRTATGVRGIKLSAGDKVVSLII-------------------------------- 750 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 E ILTV+E G+GKRT+ ++ +R+ +G+ + V Sbjct: 751 ---------------------PRGEGEILTVTENGYGKRTAESEYPTKSRATQGVISIKV 789 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G ++ V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV Sbjct: 790 SERN--GNVIGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVV 847 Query: 893 SVERIRESEIVDEAEST 909 ++R+ E + +E +T Sbjct: 848 GLQRVAEPDDEEEDNNT 864 >gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654] gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654] Length = 917 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 489/908 (53%), Positives = 642/908 (70%), Gaps = 17/908 (1%) Query: 1 MTEHIISSDEE---EEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + T S++I EM+NSYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPEPPENGGELPPERPTYSGPSITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M ++G +K Y K +R + MG+YHPHG+AAIYDALARM QD+S+ L L++G Sbjct: 61 RRILYAMHEVGNTHDKPYRKSSRPVADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R++KAA LL+D+ KDTVDF+ NYDG +EP+VL AR+PN Sbjct: 121 QGNFGSMDGDKPAAFRYTEVRMEKAAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVVD +A+I++PDI + LMEII GPDFPTG VILG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIESPDISDERLMEIIPGPDFPTGGVILG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS+++R + +E+ DR IVV E+P+QVNKA M+EKIA+LVR+K++ Sbjct: 241 RSGARKAYLEGRGSVILRAKTRVEEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKL 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T LQ+ F NM+ALNG KPE+ T Sbjct: 301 EGIAAIQDESDRLGVRVVIELKRDATPEVVLNQLFRFTQLQTSFGCNMLALNGGKPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L+ F+ FREEVV RRT +LL KARDR+H+L GLA+AV+N+DEVV IR S + A Sbjct: 361 LRDFLRHFITFREEVVARRTAFLLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A DI D I L+DD ++T+ DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 REKLMTRRWPAEDIADYIRLVDDPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +I+E LDIL SR R++ II EL +VKDE PRR+ IVE DM+DED I Sbjct: 481 TDELQELAGKIREYLDILRSRDRIMAIISDELTAVKDEFAVPRRSEIVEWSGDMDDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVT++ G+ KR PL+ YR Q+RGGKG SG+ +DED +T LF+ +THT +LFF+ Sbjct: 541 EREDMVVTITQSGWAKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G YK K WRLP+G +RGKA++NIL + G I IMP DE+ W++L +VFAT Sbjct: 601 TDGMAYKLKTWRLPLGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 G+VRRN+LSDF + R+GKIAMK + DE ++ C + +D++L T G+ +RFP+ Sbjct: 661 KGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGRAIRFPV 720 Query: 711 SAIRVFAGRNSVGVRGIS-LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +RVF RNS GVRGI L K D+V+SM+++ H DA +ER Y+K RR ++G Sbjct: 721 PDVRVFNSRNSTGVRGIRLLGKDDEVVSMSVIRHFDATSEERTAYLK----MRRQMAGAD 776 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 E S D +VEG I++ER +E++ E+ ILT++EKG GK +SS+D+ + R G+G+ A Sbjct: 777 ETDDSDDEDEAVEGAITQERFEEMQAAEELILTITEKGLGKLSSSHDYPVRGRGGQGVTA 836 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 +K G LVA FPV DQ++L + KG IR PVN I SR GV +F+T K E Sbjct: 837 --FTKAMPGGDLVACFPVGMEDQVMLATSKGQSIRCPVNGISFRSRGAGGVKVFNTGKGE 894 Query: 890 RVVSVERI 897 VVSV I Sbjct: 895 SVVSVAWI 902 >gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] Length = 921 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 467/915 (51%), Positives = 629/915 (68%), Gaps = 18/915 (1%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + G +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G Sbjct: 14 MPPERPVYDG-PQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGN 72 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K AR G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD P Sbjct: 73 THDKAYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNP 132 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A ++L D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVG Sbjct: 133 AAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVG 192 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNLGE +D C+ +I+NPD+ + L+E I GPDFPTG ++LGR G + AY GR Sbjct: 193 MATNIPPHNLGEAIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRAGARKAYLEGR 252 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS++ R +H E+ DR I+++EIPYQVNK+ M+++IAE R+K+I I+ ++DESDR Sbjct: 253 GSVITRAKTHTEEIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDR 312 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE TL L +F+ FR Sbjct: 313 NGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFR 372 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV IR S + +AR LM R+W A Sbjct: 373 EDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAE 432 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +I I LIDD ++ DGT LSE+Q RAILELRL RLT +G ++ +EL L +IK Sbjct: 433 EILPFILLIDDPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIK 492 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+SR R++ II+ EL K PRRT+IV+ DMEDED I +DMVVTV+ Sbjct: 493 EYLAILASRERIMQIIRDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTET 552 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR L +RAQ+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WR Sbjct: 553 GYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWR 612 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP GS ++GKA++NIL + G I IMP DE W++L +VFAT G VRRN+LSDF Sbjct: 613 LPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDF 672 Query: 666 IQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+GKIAMK ++ ++++ C+ ++D++L T G+ +RF + +RVF R S+ Sbjct: 673 TNVMRNGKIAMKFEGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASL 732 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L D+++SM+++ H A+ DER Y+K A L + ++++ Sbjct: 733 GVRGIKLKGDDKIVSMSVIRHFKAEADERAAYLKMRRAMAGLA-----DDAEIEDEDVPA 787 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 GNI++ER E+ E ILT++ G GK +SS+D+ + R G G+ A D K G +V Sbjct: 788 GNITQERYAEMSAAENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIV 845 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A FPV +DQI+L + KG IRVPV I SR+ GV +F+T K+E VVSV I + Sbjct: 846 ASFPVERDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIADQAD 905 Query: 903 -------VDEAESTE 910 D E+TE Sbjct: 906 EGGDTGSDDVTETTE 920 >gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259] gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259] Length = 849 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 390/906 (43%), Positives = 567/906 (62%), Gaps = 68/906 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 EQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP+VL + PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMARIAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL ++ + A++D P D+++L+ I++ PDFPT +I G +G+++ Y TGRG +V Sbjct: 182 IPPHNLTDICNALFALLDAPATDIESLISIVQAPDFPTAGIIYGLSGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R H+E SG ++ I++ E+PYQVNKA +L +I ELVR+K+I IADLRDESD+ G Sbjct: 242 MRATCHVEDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV IELKRG +ADV+LN LY+ T +Q F +NMVAL +P L +L AF+ R E Sbjct: 302 MRVYIELKRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQPRLLNLKEMLDAFLRHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L KAR+R H+L GLA+A+AN+DE+V +I+ S P A+ L+ R+W ++ + Sbjct: 362 VVTRRTVFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMV 421 Query: 428 KDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 ++++ ID + G +LSE+Q + ILE++L RLT L D I E Sbjct: 422 EEMLARIDPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKE 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I + LDIL++ +R+ II++EL V+D+ RR+ IVE DM ED I E+MV Sbjct: 482 IMAKIADLLDILANPARITQIIREELTQVRDQFGDGRRSTIVENAQDMSMEDLIKPEEMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY+K PL YRAQ+RGG+G+ +DEDF+ +F+ +TH +L FS+ G +Y Sbjct: 542 VTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRLY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P G ARGK ++N+L L GE+I+ ++P + + YV AT +G V++ Sbjct: 602 WLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFD---DEHYVFMATANGIVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F + +G IA+ LD D + +D++L + G+ VRF + +R GR Sbjct: 659 TPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV G+ LAKG ++IS+ + Sbjct: 718 AARGVIGMKLAKGAKLISLLVAED------------------------------------ 741 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + F+LT +E G+GKRT ++ R+ +G+ A S+ N G Sbjct: 742 ----------------ENDFVLTATENGYGKRTPIAEYTRHARATQGMIAIQTSERN--G 783 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +VA V +D+I+L++ G LIR V EIR SRAT+GV + + K E+++S+E++ E Sbjct: 784 KVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDKGEKLISLEKVAE 843 Query: 900 SEIVDE 905 ++ +E Sbjct: 844 TDNEEE 849 >gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 915 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 409/949 (43%), Positives = 579/949 (61%), Gaps = 112/949 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+V+GC+A+I+N D+ +D LM I GPDFPTG +I GR+GI AY TGRGS+ +R + Sbjct: 187 LTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG S +++LN LY++T +Q+ F +NMVAL+ +P+ L IL AF+ R EVV RRT Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+D V+ +IR S P A+ L+ R W ++ +++ Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLEK 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G YL+E Q +AIL+LRL +LTGL + I E SL I Sbjct: 427 AGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+SH Sbjct: 487 ELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L++GERIT I+P E + + YV FAT +G V++ LSDF Sbjct: 607 LPEASRGARGRPIINLLPLDEGERITAILPVKEYD---ADKYVFFATANGTVKKTSLSDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + SG A+ L DE++ V+ N+I+L + G+ VRF + Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADATDEVDT 723 Query: 713 -------------------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 +R GR + GVRGI L GD+V+S+ + A Sbjct: 724 DDDAGNDDDGSDNGEGTESKGTFKGVRPM-GRTAAGVRGIKLGAGDKVVSLIVPRGDGA- 781 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 ILT +E G Sbjct: 782 ----------------------------------------------------ILTATENG 789 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKRT+ ++ +R +G+ + V + N G ++ V D DQI+L+++ GTL+R V Sbjct: 790 YGKRTALDEYPTKSRGTQGVISIKVDERN--GKVIDAIQVEDTDQIMLITNGGTLVRTRV 847 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD------EAESTE 910 +E+ + R T GV + T +DE VV ++R+ ES+ + E E +E Sbjct: 848 SEVSVIGRNTGGVRLIRTGEDETVVGLQRVAESDEDENEVLAVEGEVSE 896 Score = 68.7 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 4/147 (2%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQ 692 + ++ AT++G +R L ++ +R + + + + +++ Sbjct: 770 VVSLIVPRGDGAILTATENGYGKRTALDEYPTKSRGTQGVISIKVDERNGKVIDAIQVED 829 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 + I+L T G VR +S + GRN+ GVR I + + V+ + V +D D +E + Sbjct: 830 TDQIMLITNGGTLVRTRVSEV-SVIGRNTGGVRLIRTGEDETVVGLQRVAESDEDENEVL 888 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDS 779 +S + D Sbjct: 889 AVEGEVSEGTDTAADTGAVDAGEAGDE 915 >gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218] Length = 877 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 398/891 (44%), Positives = 564/891 (63%), Gaps = 67/891 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+D+++ +IR + P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L ERIT I+P E ++ ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTEFS---DDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ +++I+L +K G+ VRF +R GR + GVR Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L +GDQV+S+ + Sbjct: 722 GMKLMEGDQVVSLIV--------------------------------------------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 737 --------PKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ D+ +++++ GTL+R V E+ R T+GV + T++DE+VV ++R Sbjct: 787 QADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837 Score = 65.2 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 64/427 (14%), Positives = 149/427 (34%), Gaps = 29/427 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E ++ +R A Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S DL +LI + Y+ + Q + E + G +++E + + Sbjct: 524 SHDIDLEELIAREDVVVTLSHEGYV-KYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R IV L ++E + Sbjct: 583 ANTHDNILCFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKSG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A G + ++ +Q + ++ T++G Sbjct: 701 KVVRFNEDQVRAMGRTASGVRGMKLMEGDQ---------VVSLIVPKTDGDILTVTENGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+++ +R+ + + + ++ + ++ ++ T G VR ++ + Sbjct: 752 GKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I ++ +QV+ + + + M+ + E Sbjct: 812 -SQVGRNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDAVEAPAPEAP 870 Query: 774 SLKNDSS 780 + + + Sbjct: 871 TEGDSEA 877 >gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 878 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] Length = 864 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 396/909 (43%), Positives = 557/909 (61%), Gaps = 67/909 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 14 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 73 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 74 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 133 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATN Sbjct: 134 YTEIRMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ C+A++ NP+ +D L+EII PDFPT +I G G++ Y TGRG +V Sbjct: 194 IPPHNLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTVGVREGYRTGRGRVV 253 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +H+E + ++V E+PYQVNK +EKIAELV EK+I I+DLRDESD+ G Sbjct: 254 MRGRTHVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 313 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EV Sbjct: 314 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 373 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P A+RELM R+W + ++ Sbjct: 374 VTRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVE 433 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + + LS+VQ + IL++RL RLTGL +D I NE + Sbjct: 434 EMLKRAAMEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEI 493 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL+ R+ II +EL ++ ++ RR+ IV D+ ED I +D+VV Sbjct: 494 MDVIADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQDLSLEDLITPQDVVV 553 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY Sbjct: 554 TLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRVYW 613 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RGK ++N+ L GE+I I+P E + N +V AT G V++ Sbjct: 614 LKVYEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFD---ENHFVFMATAKGTVKKT 670 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L++F RSG IA+ LD D ++ E NDI+L + G+ V F +R GR Sbjct: 671 ALTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM-GRA 729 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L QVIS+ I + Sbjct: 730 ARGVRGMKLQGKQQVISLLIADNDK----------------------------------- 754 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +L +E G+GKRT DFR S R +G++A S+ N G Sbjct: 755 -----------------QTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSERN--GI 795 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V D+D+I+L++ G LIR V EIR RAT+GV + + + E++ +E++ E+ Sbjct: 796 VVGARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKVVET 855 Query: 901 EIVDEAEST 909 + +EA Sbjct: 856 DDDNEAVDE 864 >gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 878 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 878 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAENDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638] gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638] Length = 888 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 408/905 (45%), Positives = 572/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH L+ DL KDTVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 ITEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLINREDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L+ F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN---VFMATASGTVKKTALTGF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +D++L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ I Sbjct: 723 GIRLAGEDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 69/419 (16%), Positives = 135/419 (32%), Gaps = 35/419 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + ++R ARR + + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELVR--DQFGDARRTEITANTSD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTGFSRPRSAGIIAINLNEGDELIGVDL--TSGSDDVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I R+ ++ T+ Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------RLAGEDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAPETE 867 >gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 904 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 406/925 (43%), Positives = 566/925 (61%), Gaps = 88/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV GC+A+I+NPD+ ++ LME I GPDFPT A+I GR GI +AY TGRG V+R Sbjct: 186 NINEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRAVMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+V+E Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ W ++ +++ Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHL Sbjct: 486 ALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K L+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++NIL L++GERIT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ E++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 A+R GR + GVRGI L +V+S+ + Sbjct: 723 TGEEVLALRPM-GRTATGVRGIRLEDDQKVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + ILTV+E G+GKRT ++ +R+ K Sbjct: 757 ----------------------------PKDDGAILTVTENGYGKRTDLSEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + +S+ N GA+V V +ND+I+L+SDKGTL+R P + R T+GV I T Sbjct: 789 GVVSIKISERN--GAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 A++E+VV ++RI E + DE E E Sbjct: 847 AEEEKVVGLQRIDEIQ-DDEVELDE 870 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 67/434 (15%), Positives = 156/434 (35%), Gaps = 26/434 (5%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435 L + + ++ L + + + ++ +I +R+ ++ D+ ++ + Sbjct: 474 LKEYEELLEIIAALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLI 533 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + + + ++ Q + + G +++E + + D + S Sbjct: 534 NEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGY 547 + ++ + T R IV L E E + ++ + G Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAHGT 653 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK--VWR 605 VK+ L+ Y R G V ++D D + + I + ++ FS G V + V Sbjct: 654 VKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRD 711 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656 G + + +L+L R T + ++ ++ T++G Sbjct: 712 SETGQVKLDPETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGAILTVTENGY 771 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R LS++ +R+ K + + ++ + ++I+L + G VR P + + Sbjct: 772 GKRTDLSEYPAKSRATKGVVSIKISERNGAVVGAVQVGENDEIMLISDKGTLVRTPATGV 831 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ ++V+ + + D E + T E+ Sbjct: 832 SSI-GRNTQGVTIIRTAEEEKVVGLQRIDEIQDDEVELDEEGNPIVPATDEAVETTSEVD 890 Query: 774 SLKNDSSVEGNISE 787 + K D + E +E Sbjct: 891 TPKADDAPEAEPAE 904 >gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] Length = 878 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ I Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 68/430 (15%), Positives = 135/430 (31%), Gaps = 35/430 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--EQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEELDAIDGSAAEGDDEIAPETDS 868 Query: 771 EITSLKNDSS 780 + + Sbjct: 869 DDDVADDADE 878 >gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] Length = 856 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 401/895 (44%), Positives = 563/895 (62%), Gaps = 58/895 (6%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR Sbjct: 8 VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMY 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL D+ K+TV+ PNYD S +EP+VL A++PN+LVNG GIAVGMATNIP HNL Sbjct: 128 QLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLA 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG VAVI NP++ + L+ +I GPDFPT I GR GI +AY+TGRG I +R + + Sbjct: 188 EVIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAIV 247 Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++EKIAELVREK+I I+DLRDESDR+G RVV+ELK Sbjct: 248 ETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + ++LN LY+ T +QS F + M+A+ +P+ TL + F+ R E+V RRT + Sbjct: 308 KDENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ LD V+ +IR S NP A+ LM ++ + + L Sbjct: 368 DLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGLS- 426 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + LSE+Q +AILE+RL RLTG+ RD I +E + + I +IL+S + Sbjct: 427 LPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASET 486 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II ELL +K++ RRT I++ ++ ED IV EDMVVT+SH GY+KR +++ Sbjct: 487 EILKIIVGELLELKEKFGDKRRTEIIDQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTM 546 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKG++G+ ++EDFV LFI S+ ++FF+ G VY KV+ +P RG Sbjct: 547 YRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRG 606 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L+ E+IT I+P E + +++ AT+HG V++ L ++ G IA Sbjct: 607 KAIVNLLNLSANEKITAILPVKEFA---ADKFIMMATRHGVVKKTPLMEYSHPRLGGIIA 663 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D+++SV D+LL ++ G+ +RF S +R GR S GVRG++L D V Sbjct: 664 VNLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTV-GRVSRGVRGMTLEDDDVV 722 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M I+ + Sbjct: 723 IGMEIINE--------------------------------------------------EY 732 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + + TV+E GFGKRT ++R +R GKGI ++ N G +V + V D + ++L Sbjct: 733 TDSTLFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERN--GCVVDIKQVVDENDLML 790 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++D+G ++RVPV I R T+GV + T DERVV+V R+ E E D EST+ Sbjct: 791 ITDQGKILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTD 845 >gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 878 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345] gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345] Length = 903 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 410/925 (44%), Positives = 560/925 (60%), Gaps = 88/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R Sbjct: 186 NLNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ W +K +++ Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + D YL+E Q +AILELRL RLTGL D I E L I Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL V RRT I +DM ED I ED+VVT+SHL Sbjct: 485 ALLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L +GERIT I+P E + Y++ AT HG V++ L+ + Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYA---EDKYIIMATSHGTVKKTALTAY 661 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +DI+L + G+ VRF A Sbjct: 662 SNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721 Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R GR + GVRGI L G V+S+ + Sbjct: 722 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 755 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 E ILTV+E G+GKRT ++ +R K Sbjct: 756 ----------------------------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTK 787 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I T Sbjct: 788 GVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRT 845 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 A+DE+VV ++RI E ++ D E Sbjct: 846 AEDEKVVGLQRIDEIQVPDVELDEE 870 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 99/267 (37%), Gaps = 18/267 (6%) Query: 536 EDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 ED + + + G VK+ L+ Y R G V ++D D + + I + ++ FS+ Sbjct: 640 EDKYIIMATSHGTVKKTALTAYSNPRVNG--IIAVNLKDGDQLIGVDITDGNDDIMLFSN 697 Query: 595 LGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSW 643 G V + G + + +++L R T + Sbjct: 698 EGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPK 757 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700 ++ T++G +R L+++ +R K + + + + + ++I+L + Sbjct: 758 GEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLIS 817 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR P + + GRN+ GV I A+ ++V+ + + E + Sbjct: 818 NKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPDVELDEEGNPIIV 876 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISE 787 + + E + + + + I + Sbjct: 877 EGAAGTEVQAEAVNTEAEVTETPKIED 903 >gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105] gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105] Length = 870 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 398/917 (43%), Positives = 564/917 (61%), Gaps = 73/917 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DSFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+TVDF PNYDGS +EP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 +P HNL EVV C+ ID P+ +D L+E+I PDFPT +I G G++ Y TGRG +V Sbjct: 182 MPPHNLKEVVAACLYAIDAPECTVDDLIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E G R+ I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGI 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T LQ F +NMVAL +P L ++ F+ R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKNTQLQDTFGINMVALVDGQPRLLNLRDLIFYFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KARDR HVL GLA+A+AN+DE + II+ +P P A+ +L+ +SW++S ++ Sbjct: 362 ITRRTVFELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVR 421 Query: 429 DLIDLIDDSSY---------------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + DG LSEVQ + IL +RL RLTGL +D I Sbjct: 422 EMLSRTELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 NE + +I + LDILS R+ IIK EL S+ +E RR+ I ++ ED I Sbjct: 482 LNEYKEVIDQIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K PL+ YRAQ+RGG+G+ +++D++ LF+ +TH ++L+FS Sbjct: 542 TPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY KV+ +P GS +RG+ +IN+ L +GE+IT ++P E + YV AT Sbjct: 602 NAGRVYWLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFE--DEDKYVFMATS 659 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+++KLSDF + + G IA+ LD D ++ ND++L + G+ VRF + + Sbjct: 660 LGTVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDV 719 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GRN+ GVRG++L +G +VI+M + Sbjct: 720 RAM-GRNARGVRGMNLEEGQRVIAMLVAES------------------------------ 748 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++Q +LT +E GFGKRT ++ R KG+ A S Sbjct: 749 ----------------------EQQSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTS 786 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +V+ VN D+I+L++ G L+R V+EIR RAT+GV + S + + Sbjct: 787 ERN--GKVVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGTWLSG 844 Query: 894 VERIRESEIVDEAESTE 910 ++RI ES+ D E+ E Sbjct: 845 LQRIVESDAEDLGETDE 861 >gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] Length = 899 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 406/906 (44%), Positives = 574/906 (63%), Gaps = 48/906 (5%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 7 EILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL DL KDTVD+ NYDG+ + P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV+DGC+A+ID+ + +D LME I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 187 MVEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARH 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE R+ I+VTE+PYQVNKA ++EKIAELV++KRI IA+LRDESD++G RVVIE Sbjct: 247 TIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG S +V++N L+ T LQ++F +NMVAL+G +P + +L+AF+ R EVV RRT Sbjct: 307 VKRGESGEVVVNNLFAQTQLQNVFGINMVALDGGEPRTLNIKEVLEAFIRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+R H+L GL +A++N+DEV+ +I+ SP+ A+ +L++R+W + +++ Sbjct: 367 LFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLER 426 Query: 434 IDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +S LS Q +AILELRL RLTGL + + +E + + Sbjct: 427 AGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILEK 486 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+S RLL +I++EL +V+D+ RRT I LD+ ED I EDMVVTVS Sbjct: 487 IAELTAILASADRLLEVIREELTAVRDQFGETRRTEIQASHLDLSIEDLIAEEDMVVTVS 546 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY K PLS Y+AQRRGG+G+S M+DED + L + STH +VL FS+ G VY KV Sbjct: 547 RSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRGKVYWLKV 606 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RGK L+N+L L + E I I+P + + + Y+ FAT G V+R L+ Sbjct: 607 YEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYD---PDSYIFFATAKGTVKRTSLA 663 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + G IA+ L+ D ++ + + +L + G+ +RF S +R GR + G Sbjct: 664 QFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM-GRTARG 722 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L G +VIS+ I S D+ + Sbjct: 723 VRGMRLLDGAEVISLII-------------------------------PRSQLIDAEDQD 751 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + + + L + +ILT SE G+GKRT +F + R G+G+ A S+ N G+LVA Sbjct: 752 DAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERN--GSLVA 809 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V +D+++L++DKGTL+R V+E+ I+SR T+GV++ + E +V RI E E V Sbjct: 810 AMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESESLVKTVRIDEPEEV 869 Query: 904 DEAEST 909 D AE Sbjct: 870 DAAEVD 875 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 88/261 (33%), Gaps = 19/261 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VKR L+ + R G + + + D + I S + Sbjct: 642 YDPDSYIFFATAKGTVKRTSLAQFSRPRSVG--LIAIDLEEGDRLVGAAITSGSDHAMLL 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-------------SLNQGERITTIMPFPED 639 SS G + + ARG + +L L E + Sbjct: 700 SSNGKAIRFDESNVRAMGRTARGVRGMRLLDGAEVISLIIPRSQLIDAEDQDDAAADSAE 759 Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDI 696 +Y++ A+++G +R +L +F R G+ + + + + ++ +++ Sbjct: 760 PLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERNGSLVAAMQVYASDEM 819 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L T G VR + + + RN+ GV I L + + ++ + + + Sbjct: 820 MLITDKGTLVRTRVDEV-SISSRNTQGVMLIRLGESESLVKTVRIDEPEEVDAAEVDPED 878 Query: 757 HMSAQRRLISGDTEEITSLKN 777 + G+ + Sbjct: 879 AAVESGQSEEGEGDTTQPSDE 899 >gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum] Length = 878 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 410/903 (45%), Positives = 572/903 (63%), Gaps = 69/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL + K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRH-VSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I Sbjct: 722 GINLQGEDRVVSLII--------------------------------------------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 737 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E +E Sbjct: 787 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 846 Query: 906 AES 908 + Sbjct: 847 LDG 849 >gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] Length = 877 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 408/923 (44%), Positives = 567/923 (61%), Gaps = 77/923 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M WN+ Sbjct: 2 DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGS+DGD AA R Sbjct: 62 PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL + + +L D+ K+T+DF PNYDG +EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++G + ++ PD +D L++II PDFPTG +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ R+ I+V E+PYQVNK +LE+IAE VREK++ I+D+RDESD+ G Sbjct: 242 MRAKTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN L++ T LQ F +NMVAL +P+ L +L+ F+A R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+D+ + IIR +P P AR+ELM RSWN+S +K Sbjct: 362 VTRRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVK 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + I SDG LSE Q IL++RL RLTGL +D I Sbjct: 422 SMLERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I E LDIL+ R+L II EL V E RR+ I D+E Sbjct: 482 LNEYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRSEIELNASDLET 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY K PLS YRAQ+RGG+GR +++D+V LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS G +Y KVW +P GS +RGK ++N+ L E+IT I+P E+ + +N Y+ Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNHYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ L+DF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +VI+M + Sbjct: 722 DENDVRPM-GRTARGVRGMNLEDDQKVIAMLVAGD------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + Q +LT +E GFGKRT ++ R KG+ Sbjct: 756 ---------------------------ESQSVLTATENGFGKRTPIAEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA VN+ND+I+L++ G LIR V+E+R RAT+GV + + + Sbjct: 789 AIQTSERN--GKVVAATLVNENDEIMLITTGGVLIRTRVSEVREMGRATQGVTLIAVEEG 846 Query: 889 ERVVSVERIRESEIVDE-AESTE 910 + ++RI ES+I DE E++E Sbjct: 847 TTLSGLQRILESDIEDENPEASE 869 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 98/234 (41%), Gaps = 14/234 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + G VK+ L+ + R+ G V + + D++ + V+ F Sbjct: 655 FPDNHYIFMATSQGTVKKTSLTDFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 712 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG +N L +++ ++ + + V+ AT Sbjct: 713 SDAGKAVRFDENDVRPMGRTARGVRGMN---LEDDQKVIAMLVAGD-----ESQSVLTAT 764 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ + ++I+L T G +R Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVNENDEIMLITTGGVLIRTR 824 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +S +R GR + GV I++ +G + + +L +D + + + ++ Sbjct: 825 VSEVREM-GRATQGVTLIAVEEGTTLSGLQRILESDIEDENPEASEEGSEQEKE 877 >gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis] Length = 888 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 387/924 (41%), Positives = 558/924 (60%), Gaps = 78/924 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ P +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++ ++ Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDILS R+ II EL +K E RR+ + D+ Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P E S + Y Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GV+G++L +G VI+M + Sbjct: 722 FDENDVRPM-GRNARGVKGMTLEEGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846 Query: 888 DERVVSVERIRESEIVD-EAESTE 910 ++ ++RI E++ + E E+T+ Sbjct: 847 GAKLGGLQRIVENDANEVEGEATD 870 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 14/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+ G V + + DF+ + V+ F Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDFLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + + + + M ED + V+ AT Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVKGMTL----EEGQSVIAMLVAED----ESQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV ISL +G ++ + ++ DA+ E + + T Sbjct: 826 VSEIREL-GRATQGVTLISLDEGAKLGGLQRIVENDANEVEGEATDEEAPGGNEAAAEGT 884 Query: 770 EEIT 773 E Sbjct: 885 GEPA 888 >gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] Length = 871 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 395/925 (42%), Positives = 570/925 (61%), Gaps = 79/925 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ Sbjct: 2 DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD AA R Sbjct: 62 PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL K A LL DL K+TVDF PNYDG +EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG + V+ N + +D L+EII PDFPTG +I G +G+++ Y TGRG +V Sbjct: 182 IPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ +R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G Sbjct: 242 MRAKTHFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P A+ +LM R+W++S ++ Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y I DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I + LDIL+ R+ II EL K+E RR+ I D+ Sbjct: 482 VNEYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIELNATDLGT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY+K P++ YRAQ+RGG+G+ + +++D++ LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G +Y KVW +P GS +RGK ++N+ L GE+IT I+P E+ + + Y+ Sbjct: 602 LCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDRYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +T G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI++ + + Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++Q +LT +E GFGKRT ++ R KG+ Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + Sbjct: 789 AIQTSERN--GKVVAATLVDAADEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846 Query: 889 ERVVSVERIRESEIVDE---AESTE 910 ++ ++RI ES+I ++ AE E Sbjct: 847 TKLSGLQRILESDIEEDQSGAEEDE 871 >gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] Length = 908 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 465/914 (50%), Positives = 609/914 (66%), Gaps = 24/914 (2%) Query: 1 MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ E + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL Sbjct: 1 MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + + G K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF Sbjct: 61 WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS+D DPPA+ RYTE RL K A LL D+ KDTVDF+PNYDG+ EP VL AR+PN+LVN Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GGIAVGMATNIP HNLGEV+D C+A +DNP + +D L++II GPDFPT +ILG G Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGTAGA 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY GRGSI++R IE+ GDR IV+T IPYQV K+ ++EKIAE ++KRI I+ Sbjct: 241 RKAYHEGRGSIIMRARHQIEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D+RDES+R+G RVVI+LKR A+ +V+LNQL+R T QS F NM+A+ G +PE L I Sbjct: 301 DIRDESNREGVRVVIDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEVLNLKDI 360 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 +++FV FREEV+ RRTK+ LNKARDRAH+L+GL IAV NLDEVVRIIR SPNP AR L Sbjct: 361 IESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARETL 420 Query: 418 MQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + R W +I I L++ + T LSE+Q RAIL+LRL RLT LGRD+I +E Sbjct: 421 LAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDEIGDE 480 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L L I E L IL+ R +L G+++QELL V+ TPR++ I +EDED I RE Sbjct: 481 LEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIERE 540 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMVVT++ GY+KR PLS +RAQ RGGKGRSG+ +DED V +F+ STHT VLFFS+ G Sbjct: 541 DMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFSTAG 600 Query: 597 FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 VY+ KVWRLP G P RG+ ++N+L L++ E I T++P PEDE+ W L VVFAT G Sbjct: 601 KVYRLKVWRLPEGGPTTRGRPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATAKG 660 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 NVRRN + F I +GK AMK + D ++ V +D+LL T+ G+ +RF + Sbjct: 661 NVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGDEV 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R F R S GVRG++L D+VIS++I+ DER Y++ + Sbjct: 721 REFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKG----------- 769 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + E +S ER EL+ +EQFILTV G+GK +S+Y++R + R G+GI D Sbjct: 770 ----EKEGEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNI 825 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 N G +VA FP DQ++LV+D+ LIR+P++ +R+ R + GV +F+ + E VVS Sbjct: 826 GRN--GPVVASFPATQADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVS 883 Query: 894 VERIRESEIVDEAE 907 R+ E E + + Sbjct: 884 AVRLAEEEGAESDD 897 Score = 44.8 bits (104), Expect = 0.072, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 34/257 (13%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VV + G V+R + + GK D + + ++ VL + G Sbjct: 653 VVFATAKGNVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKA 712 Query: 599 YKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDESSW-------- 643 + + G K ++SL+ R+ T ED + Sbjct: 713 IRFAGDEVREFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKGEKE 772 Query: 644 ---------------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEIL 685 +++ +G + + ++ + R G+ +D+ ++ Sbjct: 773 GEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVV 832 Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 + TQ + ++L T + +R P+ ++RV GR S GVR +++ G+ V+S + + Sbjct: 833 ASFPATQADQLMLVTDQAKLIRLPLDSLRVI-GRGSAGVRLFNVSGGEHVVSAVRLAEEE 891 Query: 746 ADYDERICYMKHMSAQR 762 + + + Sbjct: 892 GAESDDVGAVPDEGTAE 908 >gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16] gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16] Length = 888 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 378/910 (41%), Positives = 557/910 (61%), Gaps = 65/910 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF NYDGS +EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+A R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W+++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVR 421 Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + +DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + I + LDIL+ R+ II EL +++ E RR++I +++ ED I Sbjct: 482 VQEYRDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KV+ +P GS +RG+ ++N+ L++GE+I I+P + + ++ AT Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFD---AEHFIFMATA 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + + Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L G VI+M + A+ E Sbjct: 719 RPM-GRQARGVRGMNLEDGQTVIAMLVAPAETAEEAEAGMRGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + + ++ Sbjct: 795 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 852 Query: 894 VERIRESEIV 903 ++RI ES+ Sbjct: 853 LQRIVESDAD 862 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 101/245 (41%), Gaps = 13/245 (5%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + + G VK+ L+ + R+ G + + D++ + V+ FS Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YVVFA 651 G + + QARG +N L G+ + ++ P + + V+ A Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMN---LEDGQTVIAMLVAPAETAEEAEAGMRGSVLTA 764 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R ++++ + R G IA++ +++ + E++I+L T G +R Sbjct: 765 TENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRT 824 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ IR GR + GV I++ +G ++ + ++ +DAD + D Sbjct: 825 RVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADNGAGGDEAEDADGAEGAAGAD 883 Query: 769 TEEIT 773 + Sbjct: 884 LDANP 888 >gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 878 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I Sbjct: 723 GIKLAGDDKVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341] gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341] Length = 880 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 400/905 (44%), Positives = 567/905 (62%), Gaps = 78/905 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714 + +G IA+ L D ++ VE E+DI+L +K G+ VRF +R Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTKGGVR 722 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRGI L +GDQV+S+ + Sbjct: 723 PM-GRTAAGVRGIKLVEGDQVVSLIV---------------------------------- 747 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ Sbjct: 748 -------------------PKNDGDILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSE 788 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G++V V + D+ +++++ GTL+R V E+ R T+GV + T++ E VV + Sbjct: 789 RN--GSVVGAVQVTEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGL 846 Query: 895 ERIRE 899 +RI E Sbjct: 847 QRIDE 851 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 145/429 (33%), Gaps = 38/429 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G V +RD+D + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDALIGVEITDGESD 692 Query: 589 VLFFSSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 ++ FS G V + G+ + + + + +G ++ N+ Sbjct: 693 IMLFSKSGKVVRFNEKPIEDEEGNTKGGVRPMGRTAAGVRGIKLVEGDQVVSLIVPKNDG 752 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703 ++ T++G +R L ++ +R+ + + + ++ T+ ++ ++ T G Sbjct: 753 DILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSERNGSVVGAVQVTEGDEFMMITNAG 812 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VR ++ + GRN+ GV I ++G+ V+ + + + + Sbjct: 813 TLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALIENDAPA 871 Query: 764 LISGDTEEI 772 + D EE Sbjct: 872 AQNDDGEEE 880 >gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72] gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72] Length = 877 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 396/913 (43%), Positives = 563/913 (61%), Gaps = 70/913 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + H LL D+ K+TVDF PNYDGS +EP++L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEVVD C+ ++++P+ DL+AL+EI++ PDFPT +I G G+ Y TGRG +V Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVV 241 Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R +HIE + DRE I+V E+PYQVNK +LE+IAELV EK++ I+++RDESD+ G Sbjct: 242 MRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKR +V+LN LY++T LQ F +NMVAL KP L +L F+ R E Sbjct: 302 MRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W + + Sbjct: 362 VVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLV 421 Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 ++++ SY S LS+ Q +AILELRL RLTGL +D I E Sbjct: 422 EEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + I + LDIL+ R+ II +EL +++++ PRR+ IV ++ ED I EDMV Sbjct: 482 VMDLITDLLDILARPERITAIIVEELTAIRNQFGDPRRSEIVLSTAEINIEDLITPEDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY KR PL+ YRAQRRGG+G+ M+DEDF+ LF+ +TH +VL FSS G Y Sbjct: 542 VTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P G+ +RGK ++N+ L +GE+IT ++P + +V AT G V++ Sbjct: 602 WLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFD---EEHFVFMATSEGTVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L+ F ++G IA+ LD D ++ V E D++L + G+ VRF S +R GR Sbjct: 659 TALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++L G +VI+M + Sbjct: 718 EARGVRGMTLEDGQRVIAMLV--------------------------------------- 738 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 K + Q +LT +E G+GKRT ++ R KG+ A S N G Sbjct: 739 -------------AKGETQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--G 783 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV V+ D+++L+S LIR V +IR RAT+GV + + + + +E++ E Sbjct: 784 KLVGAVLVDPTDEVMLISTGAVLIRTKVQDIRELGRATQGVTLINLDEGTYLAGIEKVAE 843 Query: 900 S--EIVDEAESTE 910 S E + E E Sbjct: 844 SGAEADELVEGGE 856 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 14/250 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E V + G VK+ L+ + R+ G + D + V+ Sbjct: 639 QTFDEEHFVFMATSEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAI--TDGECDVM 696 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G + + +ARG + ++L G+R+ ++ + V+ Sbjct: 697 LFSDAGKAVRFAESDVRPMGREARG---VRGMTLEDGQRVIAML-----VAKGETQSVLT 748 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707 AT++G +R ++++ + R K + + + D +++ ++++L + +R Sbjct: 749 ATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGAVLVDPTDEVMLISTGAVLIR 808 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + IR GR + GV I+L +G + + V + A+ DE + + +A Sbjct: 809 TKVQDIREL-GRATQGVTLINLDEGTYLAGIEKVAESGAEADELVEGGEEGAADGEDAGA 867 Query: 768 DTEEITSLKN 777 + Sbjct: 868 PGAAGEGEQE 877 >gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] Length = 898 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 418/909 (45%), Positives = 571/909 (62%), Gaps = 36/909 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK Sbjct: 3 ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G + Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422 Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D + DG YLSE Q RAILELRL RLTGL + I E L Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + S + + ++ SSV Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAESTE 910 DE ES + Sbjct: 877 -DDENESLD 884 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R +S++ +R+ K + + + ++++ + + I+L T G Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A+ +QV+S+ V + D +E + +++ Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETS 895 Query: 765 IS 766 Sbjct: 896 TE 897 >gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] Length = 889 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 468/889 (52%), Positives = 620/889 (69%), Gaps = 8/889 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G K Y K AR G+VMG+ Sbjct: 1 MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A FLL Sbjct: 61 YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVD++ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D +A Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I++PD+ + L++ + GPDFPTG ++LGR+G + AY GRGS+VIR + +E+ DR Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRW 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IV+ EIPYQVNKA+M+EKIAE VR+K+I I+ ++DESDR G RVV+ELKR A+A+V++ Sbjct: 241 AIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVVM 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT YLL KAR+R+ Sbjct: 301 NQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERS 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GLA+AV N+DEVV IR S + AR +LM R W A DI I LIDD ++T D Sbjct: 361 HILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRL RLT +G ++ +EL L +IKE L+IL SR R+LGII E Sbjct: 421 GTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L V++ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL +RAQRRGGK Sbjct: 481 LREVRELFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G+ A+GKA++NIL + Sbjct: 541 GVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILPI 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSR 681 G + IMP DE W++L VVFAT G VRRNKLSDF + +GKIAMK Sbjct: 601 PTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKIAMKFEGEHEG 660 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +++ + ++D++L T G+ +RFP + +R+F RNSVGVRGI L KGD ++SM+++ Sbjct: 661 TTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGKGDNLVSMSVI 720 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 H +A +ER+ Y+K R + ++ T + + G +S ER E+ E IL Sbjct: 721 RHFEATSEERVAYLKQR---RLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMSAAEDLIL 777 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 T++ KG GK +S++D+ + R G G+ A +K G +VA FPV +DQ++L + KG Sbjct: 778 TITAKGAGKVSSAHDYPVRGRGGMGVTAW--TKAMAHGPIVACFPVEMSDQVMLATSKGQ 835 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IRVPV I SR+ GV +FST K+E VVSV I + ++ + Sbjct: 836 SIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWIADQGNEEDDAVED 884 >gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] Length = 904 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 409/905 (45%), Positives = 560/905 (61%), Gaps = 35/905 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNPDID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + +G L+E+Q ILE+RL RLTGL +D + +E L Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL++VK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P E + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V E DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A G +E + Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGIEDENEDDNGVEEIA 757 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 N Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 758 ANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 903 VDEAE 907 DE E Sbjct: 876 EDEDE 880 Score = 88.3 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+R +S + R G+ D I + + +L T G+ Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKV 598 Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 P+ + AG N+ G I+ L G++V ++ V Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRE------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 QF+ ++ G K+T +F R Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 +G A ++ + ALV V + I+L + G +R +++R R GV Sbjct: 666 LARGKIAINLDEG---DALVGVGRTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722 Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910 E VVS+ + ES E E+ + Sbjct: 723 IKMPAGEEVVSL-IVAESAGGIEDENED 749 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 29/269 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VK+ PL + + GK + + + D + + +L F Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGRTDGERDILLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNN- 645 +S G + ++ A + A ++SL E I ED++ Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGIEDENEDDNGVEEI 756 Query: 646 ----------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILS 686 Y++ AT++G +R L D+ + R + + + ++++ Sbjct: 757 AANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVA 816 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 +++LL + G VR S I GRN+ GV I L+K +++ ++ + + Sbjct: 817 AVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSL 775 + ++ + + + +E+ Sbjct: 876 EDEDEVAAAAPAATDGIPAAASSEDAAQE 904 >gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] Length = 898 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 418/909 (45%), Positives = 571/909 (62%), Gaps = 36/909 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK Sbjct: 3 ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G + Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422 Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D + DG YLSE Q RAILELRL RLTGL + I E L Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + S + + ++ SSV Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAESTE 910 DE ES + Sbjct: 877 -DDENESLD 884 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R +S++ +R+ K + + + ++++ + + I+L T G Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A+ +QV+S+ V + D +E + +++ Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETS 895 Query: 765 IS 766 Sbjct: 896 TE 897 >gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1] gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans] gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1] Length = 888 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 389/926 (42%), Positives = 557/926 (60%), Gaps = 80/926 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K +H +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKISHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ P +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++ ++ Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDILS R+ II EL +K E RR+ + D+ Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P E S + Y Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GV+G++L +G VI+M + Sbjct: 722 FDENDVRPM-GRNARGVKGMNLEEGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846 Query: 888 DERVVSVERIRE---SEIVDEAESTE 910 ++ ++RI E SE+ DEA E Sbjct: 847 GAKLGGLQRIVENDASEVEDEATGEE 872 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 14/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+ G V + + DF+ + V+ F Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDFLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG +N+ + + M ED + V+ AT Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVKGMNL----EEGQSVIAMLVAED----ESQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV ISL +G ++ + ++ DA E + + + T Sbjct: 826 VSEIREL-GRATQGVTLISLDEGAKLGGLQRIVENDASEVEDEATGEEATGGDEAAAEGT 884 Query: 770 EEIT 773 E Sbjct: 885 GEPA 888 >gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2] gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2] Length = 871 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 391/916 (42%), Positives = 561/916 (61%), Gaps = 75/916 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + I +S+ DEMQ SYL+YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G WNK Sbjct: 3 DFAREILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TV+F PNYDGS EP VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMSKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E V C+A+IDNP++ + LME + GPDFPT +I G GI+ AY TGRG + + Sbjct: 183 PPHNLNETVSACIALIDNPELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E + I+V EIPYQVNKA ++E+IAELV+EK+I I+ LRDESD+ G R+ Sbjct: 243 RARTSVETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KRG +V++N LY+ T++Q++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 VIEVKRGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR++AH+L GLA+A+ N+DE++ +I+ SP+P A+ +++R W+ +++ L Sbjct: 363 RRTIYDLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQL 422 Query: 431 IDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ ++ G LS Q +AILE+RL RLTGL +D I E L Sbjct: 423 LEKVEMKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLV 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 ++I E L+IL + RL ++++EL V + RRT I D++ ED I E+ +VT Sbjct: 483 LKIAEFLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GY+K PLS Y+AQRRGG+G+S M+++D + + + STH +L FS+ G +Y + Sbjct: 543 LSRDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQ 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K W+LP+ S ++GK ++N+L L GE IT+I+P E YV ATK V+R Sbjct: 603 KTWQLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFS---EGYYVFMATKQSTVKRVA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF + +G IA+ L DE++ E DI+L + +G+ +RF + +RV GR + Sbjct: 660 LSDFSRPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVM-GRQA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L G +ISM + Sbjct: 719 RGVRGMKLKDGMSIISMQVAR--------------------------------------- 739 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 K+ ILT +E G+GK T D+ NR G+G+ + S N G + Sbjct: 740 --------------KDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRN--GNV 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---- 897 V V + +++L+++KGTL+R V+EI + R T+GV + + K E VV + + Sbjct: 784 VYSVAVTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQE 843 Query: 898 ---RESEIVDEAESTE 910 + +I D ES E Sbjct: 844 DELPDIDIEDMPESDE 859 Score = 79.1 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 15/236 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + VKRV LS + R G ++ D+D + I ++ FS++G Sbjct: 645 YVFMATKQSTVKRVALSDFSRPRANGIIAVDLL--DDDELVGTAITDGEQDIMLFSNIGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + QARG + ++ M + + + ++ AT+HG Sbjct: 703 AIRFDENDVRVMGRQARGVRGM---------KLKDGMSIISMQVARKDTLILTATEHGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAIR 714 + + D+ INR G+ + + + D +V T + +++L T G VR +S I Sbjct: 754 KCTPVDDYSTINRGGQGVISIKTSDRNGNVVYSVAVTPDQEVVLITNKGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 GRN+ GV+ I++ KG+ V+ +A+V + + + S + I + + Sbjct: 813 SVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDELPDIDIEDMPESDEAPEIVSEDD 868 >gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454] gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI 454] Length = 867 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 386/916 (42%), Positives = 565/916 (61%), Gaps = 74/916 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K H LL D+ K+TVDF PNYDGS +P VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLAKIGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++++P +D L+EI+ PDFPT ++ G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNHPQASIDELIEIVPAPDFPTAGIVYGVQGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQPKLLNLRELLECFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L +AR+R HVL GLA+A+AN+DE + II+ +P P A++ LM R+W+++ ++ Sbjct: 362 VTRRTLYELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVR 421 Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D++ + + SDG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 DMLSRAQGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II EL+++K E PRR++I ++ ED I Sbjct: 482 TAEYREVMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K PLS YRAQ+RGG+G+ +VM+D+D++ LFI +TH +L FS Sbjct: 542 TPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + +V AT Sbjct: 602 NRGRVYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFLATS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L F + R G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 LGTVKKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG+ L +G QVI++ + Sbjct: 719 RPM-GREARGVRGMQLEEGQQVIALLV--------------------------------- 744 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + Q +LT +E G+GKRT ++ R KG+ A S Sbjct: 745 -------------------AGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 785 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V + +I+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 ERN--GRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSG 843 Query: 894 VERIRESEIVDEAEST 909 +++I E++ +AES Sbjct: 844 LQQIAETDAEADAESD 859 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 14/232 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R KG V + D DF+ I V+ F Sbjct: 647 FSADKFVFLATSLGTVKKTPLEAF--SRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + L +G+++ ++ + + V+ AT Sbjct: 705 SDAGKAVRFDENDVRPMGREARG---VRGMQLEEGQQVIALL-----VAGGESQSVLTAT 756 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ +++ +++I+L T G +R Sbjct: 757 ENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPDSEIMLITTAGVLIRTR 816 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +S IR GR + GV ISL +G ++ + + DA+ D + + Sbjct: 817 VSEIREM-GRATQGVTLISLDEGTKLSGLQQIAETDAEADAESDADTGGADE 867 >gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] Length = 888 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 409/912 (44%), Positives = 561/912 (61%), Gaps = 68/912 (7%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + + K + V + DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G Sbjct: 27 LKTMSDFAKEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGN 86 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 WNKKYVK A I G+VMGKYHPHG++AIYD L RMAQ +SLR L++GQGNFGS+DGDPP Sbjct: 87 AWNKKYVKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPP 146 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K AH LL D+ K+TVDF PNYDGS QEP VL R PN+LVNG GIAVG Sbjct: 147 AAYRYTEARMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVG 206 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HNLGE +D C+ ++D+PD D ALM + GPDFPTGA+I G GI+ AY TGR Sbjct: 207 MATNVPPHNLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALINGAKGIREAYETGR 266 Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 G I IR +HIE S ++ IVV E+PYQVNKA +L KIAELV+EK+I I LRDESD Sbjct: 267 GRIYIRAKTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESD 326 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G R+VIEL+RG A+VILN L++ T LQ +F +NM+AL G +P +L L+ F+A Sbjct: 327 KDGIRMVIELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQPRLLSLKEALQVFIAH 386 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EVV RR+ Y L KAR+RAH+L GLAIA+AN+DE++ +IR S P A+ L+ R W Sbjct: 387 RREVVTRRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTP 446 Query: 425 SDIKDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + D++ + G +LS Q +AIL+LRL RLTGL +D I E Sbjct: 447 GQVVDMLARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQE 506 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 + EI+ L+IL RLL +IK+ELL +K++ + RRT+I++ L++ ED I E Sbjct: 507 FQEIIHEIEALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDLIAEE 566 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D V+T+SH GY+K PL+ Y AQRRGGKG+S ++DEDFV L + +TH ++L F++ G Sbjct: 567 DRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTNRG 626 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY KV+ LP A+GK ++N+L GER+ ++ + + Y++FATK G Sbjct: 627 KVYWLKVYELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYP---EDQYLIFATKSGT 683 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ LS++ + G IA+ L DE++ V DI+L + G+ VRF +++R Sbjct: 684 VKKTPLSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSM 743 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR+S GVRG++L G +VI++ +V Sbjct: 744 -GRDSTGVRGMNLDDGQRVIALCVVEEQGD------------------------------ 772 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ILT++E G+GKRT D+ R KG+ + S N Sbjct: 773 -----------------------ILTITENGYGKRTPVADYPQKGRGTKGVISIACSARN 809 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G V V +++ I+LV+D GTL+R V EI + R T+GV + T E++++V + Sbjct: 810 --GQAVCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAVAK 867 Query: 897 IRESEIVDEAES 908 I E + Sbjct: 868 IVAESEDSEGDE 879 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 15/232 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ PLS Y R G + +R++D + D+ ++ F Sbjct: 669 YPEDQYLIFATKSGTVKKTPLSEYSRPRSIG--IIAINLREDDELVDVARTDGSRDIMLF 726 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + + G +N L+ G+R+ + ++ T Sbjct: 727 SDAGKAVRFNENSVRSMGRDSTGVRGMN---LDDGQRVIALCVVE------EQGDILTIT 777 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++D+ Q R K + + + + ++ I+L T G VR Sbjct: 778 ENGYGKRTPVADYPQKGRGTKGVISIACSARNGQAVCAVQVLEDEHIMLVTDNGTLVRTR 837 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ I +GRN+ GVR I +++I++A ++ D + + + Sbjct: 838 VAEI-STSGRNTQGVRLIRTTDSEKLIAVAKIVAESEDSEGDEGMTEESGEE 888 >gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 878 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 ITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ I Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 68/430 (15%), Positives = 136/430 (31%), Gaps = 35/430 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSAERLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGKDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDDIAPEVDT 868 Query: 771 EITSLKNDSS 780 + + + Sbjct: 869 DDDAADDADE 878 >gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301] gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301] Length = 882 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 561/910 (61%), Gaps = 67/910 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Sbjct: 2 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+D C A++ +P++ ++ L+E++ PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNINEVLDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +H+E G R+ ++V E+PYQVNK +EKIAELV EK+I I+DLRDESD+ G Sbjct: 242 MRGRTHVEDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG A+V+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EV Sbjct: 302 RVVIELKRGEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR R H+L GLA+A+AN+DE++ II+ +P P A+ LM ++WN+ ++ Sbjct: 362 ITRRTVFELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVE 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + LS++Q + IL++RL RLTGL +D + +E + Sbjct: 422 EMLKRAAMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL++ +R+ II EL ++ + RR+ IV D+ ED I +D+VV Sbjct: 482 MDIIADLLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS RGK ++N+ L +GE+I I+ E + N ++ AT G V++ Sbjct: 602 LKVYEVPQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFD---ENHFIFMATSLGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LSDF +SG IA+ LD D ++ E ND++L + G+ V F +R GR Sbjct: 659 PLSDFANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSM-GRA 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ LA QV+S+ I + Sbjct: 718 TRGVRGMKLADNQQVLSLLIADN------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +Q +L +E G+GKRT DFR S R +G++A +S+ N G Sbjct: 741 ---------------DQQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERN--GL 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA VN++D+I+L++ G LIR V EIR RAT+GV + + + E++ +E+I ES Sbjct: 784 VVAAKLVNEDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVES 843 Query: 901 EIVDEAESTE 910 + + + Sbjct: 844 DDPESEVDAD 853 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 103/254 (40%), Gaps = 14/254 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + LG VK+ PLS + R+ G + + + DF+ I + V+ Sbjct: 640 FDENHFIFMATSLGTVKKTPLSDFANPRKSG--IIAINLDEGDFLIGAEITNGANDVILV 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + RG + + L +++ +++ D+ V+ AT Sbjct: 698 SNGGKAVWFTEDDVRSMGRATRG---VRGMKLADNQQVLSLLIADNDQ-----QSVLVAT 749 Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFP 709 ++G +R L+DF G A+ + R+ ++ + ++++I+L T G +R Sbjct: 750 ENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVLIRTR 809 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + IR GR + GV I+L +G+++ + ++ +D E + + Sbjct: 810 VKEIREL-GRATQGVTLINLGEGEKLSGLEKIVESDDPESEVDADATVELDASIDSNSEV 868 Query: 770 EEITSLKNDSSVEG 783 E T+ ++ Sbjct: 869 ESDTNDNAEADDNA 882 >gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae] Length = 881 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 411/909 (45%), Positives = 575/909 (63%), Gaps = 70/909 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + SD + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G +WNK Y K AR+ G+V+GKYHPHG++A+YDA+ R+AQ +S+R +L++GQGNFGSV Sbjct: 59 NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A ID+ +I ++ L+E I GPDFPT A+I GR GI +A Sbjct: 179 GIAVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAIINGRRGIIDA 238 Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG + IR ++IE RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ L Sbjct: 239 YRTGRGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISAL 298 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G R+VIE+KR A A+V+LN LY T LQ F +NMVAL +P L IL+ Sbjct: 299 RDESDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQPRLLNLKEILE 358 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFV R EVV RRT + L KAR+RAH+L LA+A+AN+D ++ +IR + P A+ L+ Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIA 418 Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471 R W ++ ++ D++ +G YL+E Q +AIL+LRL +LT L D Sbjct: 419 RPWQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHD 478 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I +E L +I L IL+S RL+ +I++EL +VK++ RRT I E D+ ED Sbjct: 479 KILDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRDVRRTEITENSADINIED 538 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +ED+VVT+SH GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L Sbjct: 539 LINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILC 598 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV++LP S ARG+ ++N+L L Q ERIT I+P E + + YV A Sbjct: 599 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREFD---DGHYVFMA 655 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L DF + +G IA+ L+ DE++ V+ +N+++L + G+ VRF + Sbjct: 656 TASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVVRFAEN 715 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 A+R GR + GVRGI L GD+V+S+ + Sbjct: 716 AVRPM-GRTATGVRGIKLHAGDKVVSLIV------------------------------- 743 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 E ILTV+E G+GKRT ++ +R+ +G+ + Sbjct: 744 ----------------------PRGEGDILTVTENGYGKRTEQSEYPTKSRATQGVISIK 781 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 VS+ N G +V V DQI++++D GTL+R V E+ I R T+GV + TA+DE+V Sbjct: 782 VSERN--GNVVGAIQVEKTDQIMMITDAGTLVRTRVAEVSIVGRNTQGVTLIRTAEDEKV 839 Query: 892 VSVERIRES 900 V ++R+ + Sbjct: 840 VGLQRVVDP 848 Score = 67.9 bits (164), Expect = 9e-09, Method: Composition-based stats. Identities = 60/402 (14%), Positives = 141/402 (35%), Gaps = 34/402 (8%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 ++ + + + E R +R + E + ++ N D+ + Y SD Sbjct: 504 LMEVIREELEAVKEQYRDVRRTEITENSADINIEDLINQEDVVVTLSHQGYVKYQPLSDY 563 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE-------IKECLDILSSRSRLL 498 E Q R AR+ + N+ + + Sbjct: 564 -----EAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 618 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G + ++++ R T I+ + V + G VK+ L + Sbjct: 619 GARGRPIVNLLPLEQNERITAILPVREFDDGH-------YVFMATASGTVKKTSLKDFSR 671 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 R G + DE DL + V+ FS+ G V + + A G Sbjct: 672 PRSAGIIAVNLNEGDELIGVDL--TAGKNEVMLFSAGGKVVRFAENAVRPMGRTATG--- 726 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + + L+ G+++ +++ ++ T++G +R + S++ +R+ + + + Sbjct: 727 VRGIKLHAGDKVVSLI------VPRGEGDILTVTENGYGKRTEQSEYPTKSRATQGVISI 780 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + + + + I++ T G VR ++ + GRN+ GV I A+ ++V Sbjct: 781 KVSERNGNVVGAIQVEKTDQIMMITDAGTLVRTRVAEV-SIVGRNTQGVTLIRTAEDEKV 839 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 + + V+ + + ++ ++ + ++ E +L Sbjct: 840 VGLQRVVDPEEEEEDNQTLIEDTIGVKAEPDINSVENLTLNE 881 >gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1] gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1] Length = 890 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 408/905 (45%), Positives = 580/905 (64%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A I++ +I ++ALME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 LREVINGCLAYIEDENISIEALMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 427 AGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIRLAEGDRVVSLIVPREEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------IMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 92/236 (38%), Gaps = 15/236 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LG VK+ L + R G V +RD+D + + + + + + FS+ G V + Sbjct: 650 TALGTVKKTALKEFSRPRSAG--IIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+R+ +++ ++ T++G +R Sbjct: 708 ESAVRAMGRTA---SGVRGIRLAEGDRVVSLI------VPREEGAIMTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 N+ GV I A+ + V+ + V + + + + + + Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGEDDIAPEAEIDDEEI 873 >gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 878 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4] gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688] gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4] gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688] Length = 848 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 392/905 (43%), Positives = 557/905 (61%), Gaps = 67/905 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D L++II PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTLGVKEGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +H+E + +++ E+PYQVNK ++EKIAELV +K+I I+DLRDESD+ G Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T LQ F +NMVAL +P L +L+AF+ R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P A++ LM R+W + ++ Sbjct: 362 ITRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVE 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + + LS+VQ + IL++RL RLTGL +D I NE + Sbjct: 422 EMLKRAAMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL+ R+ +I EL +++ + RR+ IV D+ ED I +D+VV Sbjct: 482 MDVIADLLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RGK ++N+ L GE+I I+P E + N ++ AT G V++ Sbjct: 602 LKVYEVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFD---ENHFIFMATAQGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F R+G IA+ LD D ++ E NDI+L + G+ V F +R GRN Sbjct: 659 ALVEFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRN 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +VIS+ I Sbjct: 718 TRGVRGMKLMAKQRVISLLIAEDDK----------------------------------- 742 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +L +E G+GKRT DFR S R +G++A S+ N G+ Sbjct: 743 -----------------QTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERN--GS 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+D D+I+L++ G LIR V EIR RAT+GV + + ++E++ +E++ E+ Sbjct: 784 VVAARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVET 843 Query: 901 EIVDE 905 + DE Sbjct: 844 DDADE 848 >gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB] gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB] Length = 890 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 407/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A I+N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 LREVINGCLAYIENEDISIEELMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILS RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + Sbjct: 723 GIRLAEGDRVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +E I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 738 --------PREEGAIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 92/236 (38%), Gaps = 15/236 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LG VK+ L + R G V +RD+D + + + + + + FS+ G V + Sbjct: 650 TALGTVKKTALKEFSRPRSAG--IIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+R+ +++ ++ T++G +R Sbjct: 708 ETAVRAMGRTA---SGVRGIRLAEGDRVVSLI------VPREEGAIMTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 N+ GV I A+ + V+ + V + + + + + + Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGEDDIAPEAEIDDEEI 873 >gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 878 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804] gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii] Length = 885 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 387/911 (42%), Positives = 550/911 (60%), Gaps = 78/911 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEVRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP+ +D L+E+I PDFPTG +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSVDELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +VILN LY+ T LQ F +N+VAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVILNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIHYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM R+W++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ D + + + DG LS+ Q + IL +RL RLTGL +D I Sbjct: 422 EMLSRADLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II +EL ++K E RR+ I +++ Sbjct: 482 VGEYKDVMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS G VY KVW +P G+ +RG+ ++N+ L GE+IT ++P E + YV Sbjct: 602 LCFSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFS---EDNYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG++L G VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMTLEDGQSVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 749 -----------------------AGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V V +D+I+L++ G L+R V+EIR RAT+GV + S Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843 Query: 890 RVVSVERIRES 900 + V R+ ES Sbjct: 844 SLSGVRRVVES 854 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 79/190 (41%), Gaps = 16/190 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D+++ MA + + + + + I + Sbjct: 468 MRLQRLTGLEQDKIVGEYKDVMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDT 527 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 S +E N +E ++L ++T+S G+ K ++R R G+G +AT + + + Sbjct: 528 RRSEIEFNATELDTEDLITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 I L F N ++ ++ SD+G + + V E+ +R ++G V +F A E++ Sbjct: 588 WIDQL---FIANTHNYLLCFSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITV 644 Query: 894 VERIRESEIV 903 V ++E Sbjct: 645 VLPVKEFSED 654 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 73/403 (18%), Positives = 143/403 (35%), Gaps = 31/403 (7%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + S+I+ +D +D + L Sbjct: 495 LLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDLITPTDMVVTL 554 Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 S I L+ R + + + L I ++ + LL + + Sbjct: 555 S--HAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLCFSDRGRVYW 612 Query: 509 KDELDT------PRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLS 554 + R IV + E ++ V + G VK+ PLS Sbjct: 613 LKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSRGTVKKTPLS 672 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R+ G V + + D++ + V+ FS G + + AR Sbjct: 673 DFSNPRKAG--IIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + ++L G+ + ++ + + V+ AT++G +R ++++ + R K Sbjct: 731 G---VRGMTLEDGQSVIALLVAGD-----ESQSVLTATENGYGKRTSIAEYTRHGRGTKG 782 Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 + + +++ ++I+L T G VR +S IR GR + GV IS+ Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLISVDD 841 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 G + + V+ +DAD D+ + S + E T Sbjct: 842 GSSLSGVRRVVESDADADDEDAEATDANDGESGASPEPTEPTE 884 >gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601] gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601] Length = 905 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 479/895 (53%), Positives = 627/895 (70%), Gaps = 7/895 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G +K Y KCA Sbjct: 14 ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATAV 73 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL++ Sbjct: 74 GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 133 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL+D+ KDTVDF PNY EPVVL ARYPNVLVNG GIAVGMAT IP HNLGEV Sbjct: 134 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 193 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I+NPD+ + L+E I PDFPTG VILGR+G + AY GRGS++IR + IE+ Sbjct: 194 IDATLALIENPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGRGSVIIRAKTRIEE 253 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNKA M+E+IAE VR+K+I IA ++DESDR G RVVIELKR A Sbjct: 254 IKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELKRDA 313 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQLYR+T +Q F NM+ALNG KPE+ TL L AF+ FRE+VV RRT YLL Sbjct: 314 TAEVVLNQLYRFTPMQVSFGCNMLALNGGKPEQLTLRTFLTAFLDFREDVVARRTAYLLR 373 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AVAN+DEVV IR S + AR +LM R W A +I I LIDD + Sbjct: 374 KARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLIDDPT 433 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L+IL SR R++ Sbjct: 434 HKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 493 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II E+ +V+D+ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL+ YR+ Sbjct: 494 EIISNEMTAVRDQFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTQSGYIKRTPLADYRS 553 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WRLP G ++GKA+ Sbjct: 554 QKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRLPQGGRTSKGKAI 613 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + QG + IMP E W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 614 VNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMKF 673 Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + DE +++ C++++D++L T G+ +RFP+ +RVF RNS GVRG+ LA GD+V Sbjct: 674 EGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNSTGVRGVKLANGDEV 733 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H +A+ DER Y+K A L + + + +S ER E+ Sbjct: 734 VSMSVIRHFEAESDERASYLKMRRAMAGLADDAEAASDDDE--GNADSLLSAERYAEMSA 791 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E +LT++ KG GK +SS+D+ I R G G+ A + S G +VA FPV DQI+L Sbjct: 792 AENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMR--GGEIVASFPVEMEDQIML 849 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + G IRVPV I SR+ GV +F+T + E VVSV I + DE E+ E Sbjct: 850 ATSTGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQGDEDEGEAGE 904 >gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 898 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 417/909 (45%), Positives = 569/909 (62%), Gaps = 36/909 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK Sbjct: 3 ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G + Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422 Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D + DG YLSE Q RAILELRL RLTGL + I E L Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+ +DF+ L + +T ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + S + + ++ SSV Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAESTE 910 DE ES + Sbjct: 877 -DDENESLD 884 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R +S++ +R+ K + + + ++++ + + I+L T G Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A+ +QV+S+ V + D +E + +++ Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETS 895 Query: 765 IS 766 Sbjct: 896 TE 897 >gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] Length = 855 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 385/908 (42%), Positives = 558/908 (61%), Gaps = 67/908 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +N+ Sbjct: 3 QFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K +H +L D+ K+TVDF PNYDGS EP+++ R PN+L+NG GIAVGMATN Sbjct: 123 TEIRMSKISHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNF 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G +A++ P+ +D LME I GPDFPT +I G +G+++ Y TGRG +V+ Sbjct: 183 PPHNLTEVINGLLALLQKPETSIDELMEFIPGPDFPTSGIIHGISGVRDGYRTGRGRVVM 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 RG +H+E E I+V E+PYQVNK +EKIAELV +K+I I+DLRDESD+ G R Sbjct: 243 RGKTHVESLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELK+G +VILN LY+ T LQ F +NMVAL +P L IL AF+ R EV+ Sbjct: 303 VVIELKKGEIPEVILNNLYKQTQLQDNFGMNMVALIDGQPRLLNLREILDAFLKHRREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R H+L GLA+A+AN+DE+++II+ +P P A++ELM+RSW + + Sbjct: 363 TRRTVYELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSS 422 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ + LS+ Q + IL+LRL RLTGL ++ I E +++ Sbjct: 423 MLKKSSQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIM 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 + I + LDIL+ R+ II +EL ++ + RR+ IV D+ ED I +DMVVT Sbjct: 483 VTIIDLLDILNKSERVTSIISEELTEIRSQYGDDRRSEIVTDAYDLSIEDLIAPQDMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ GY+K L YRAQ+RGG+G+ + +++DF+ +F+ ++H ++L FSS G VY Sbjct: 543 LSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P GS +RGK ++N+ L GE+I I+ + ++ Y+ AT G V++ Sbjct: 603 KVYEVPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFV---DDEYIFMATAKGTVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF +SG IA+KL + D ++ E DI+L + G+ V F +R GRN+ Sbjct: 660 LSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSM-GRNA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L +QV+S+ I + Sbjct: 719 AGVRGMKLPDTEQVLSLLIASSNE------------------------------------ 742 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + +L +E G+GKRT +FR S R +G++A VS N G + Sbjct: 743 ----------------ESVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRN--GIV 784 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V D+D+I+L++ G LIR V+EIR RAT+GV + + + E++ +E+I ES+ Sbjct: 785 VAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGIEKIVESD 844 Query: 902 IVDEAEST 909 +D+ + Sbjct: 845 HIDDGQDD 852 >gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1] gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] Length = 923 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + +E+ REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EV Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VV Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646 + + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662 Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 Y+ AT G V++ L F + SG IA+KL+ Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V+E+ ++ R T+GV + A DE +V +ER++E D+ + E Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 98/247 (39%), Gaps = 15/247 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + I V+ FSS G Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + I ARG + + L +G+++ +++ + ++ A++ G Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + + + ++ + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 +GRN+ GV I LA + ++ + V DE + + + + E + Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESESEPAA 916 Query: 775 LKNDSSV 781 + Sbjct: 917 EAEGNEE 923 >gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901] gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 812 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 393/892 (44%), Positives = 562/892 (63%), Gaps = 85/892 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V + +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ +K + K Sbjct: 6 KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I GEV+GK+HPHG+ A+YDA+ RMAQD+S R LI+G GNFGSVDGD AA RYTE R Sbjct: 66 AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +L D+ K+TVDF PNYD S +EPVVL +R PN+LVNG GIAVGMATNIP HN Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DG V +ID+P++++ LM+II+GPDFPTG I+GR GI+ AY TGRG+I +R V+ Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVT 245 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 EK SG + I+VTE+PYQVNKA ++EKIAELVR+K+I IADLRDESDR+G R+VIEL Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ V+LNQL+++T LQ F + M+AL +P L IL ++ +++VV RRT+ Sbjct: 306 KRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRTR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR LM R Sbjct: 366 YDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSR-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLT L R+ I E L +I+ IL+ Sbjct: 412 ------------FGLTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LLG+I+QELL +K++ RRT+I ++ED I EDMV+T++H GY+KR+P+ Sbjct: 460 RVLLGVIRQELLEIKEKYGDARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVD 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ QRRGG+G + + ++EDFV LF+ STH +LFF++ G VY+ KV +P QA+ Sbjct: 520 TYKNQRRGGRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAK 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L ++Q ERIT I+P E ++ Y+ TK+G V++ LS++ R G I Sbjct: 580 GTPIVNLLYVDQDERITAIIPVKEFT---DDHYLFMVTKNGIVKKTVLSEYDSSRRDGII 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L+ D+++ V+ T + ++++ TK G +RF + +R GR + GV+GI+L+ GD+ Sbjct: 637 ALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPM-GRTARGVKGITLSPGDE 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI + +V Sbjct: 696 VIGLEVVD---------------------------------------------------- 703 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++ +LTV+ KGFGK+T ++R+ R GKGI V++ N G +V + V D+++ Sbjct: 704 -EQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKN--GEVVGIVAVRPEDEVM 760 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +S +G +IRV EI RAT+GV + KD+++ +V +I E + Sbjct: 761 AISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDEEND 812 >gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2] gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1] gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] Length = 921 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + +E+ REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EV Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VV Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646 + + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662 Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 Y+ AT G V++ L F + SG IA+KL+ Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V+E+ ++ R T+GV + A DE +V +ER++E D+ + E Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 98/245 (40%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + I V+ FSS G Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + I ARG + + L +G+++ +++ + ++ A++ G Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + + + ++ + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 +GRN+ GV I LA + ++ + V DE + + + + + Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESEPAAEA 916 Query: 775 LKNDS 779 N+ Sbjct: 917 EGNEE 921 >gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] Length = 886 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 407/895 (45%), Positives = 570/895 (63%), Gaps = 68/895 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LAEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILPLKDILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +IR P P A+ L+ RSW + ++D Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLDR 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + L+ +I++EL+++K++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLESNERITAILPVREYE---EGRHVFMATASGTVKKTSLIEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+LA+GD+V+S+ + Sbjct: 723 GINLAEGDRVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 738 --------PRGEGPILTVTQHGYGKRTAQAEYPTKSRATQGVISIKVSERN--GEVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+D DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++ + E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVAEQ 842 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 15/253 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L + R G + DE DL V+ FS+ G V Sbjct: 646 VFMATASGTVKKTSLIEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAYGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + ++ A G IN+ ++ ++ T+HG + Sbjct: 704 VRFPENQVRSMGRTATGVRGINLAEGDR---------VVSLIVPRGEGPILTVTQHGYGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R +++ +R+ + + + E++ + I++ T G VR +S + Sbjct: 755 RTAQAEYPTKSRATQGVISIKVSERNGEVVGAVQVDDCDQIMMITDAGTLVRTRVSEV-S 813 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A+ + V+ + V D D A L+ D + Sbjct: 814 IVGRNTQGVTLIRTAQDEHVVGLQCVAEQVDDDDLDSVVSPDALADDSLVDADDADEADN 873 Query: 776 KNDSSVEGNISEE 788 + + + E Sbjct: 874 GVEGDDDVDGERE 886 >gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] Length = 848 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 384/904 (42%), Positives = 564/904 (62%), Gaps = 69/904 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+D C+ ++ +PDID+ LM I PDFPT +I G +GIK+ Y TGRG ++ Sbjct: 182 IPPHNISEVIDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ G+R I++ E+PYQVNKA +L +I ELVR+KRI I+DLRDESD+ G Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T +Q F +NMVAL +P L +L F+ R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM R+W +S ++ Sbjct: 362 ITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVE 421 Query: 429 DLIDLIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++ + + LS+ Q +AIL+LRL RLTGL ++ I +E Sbjct: 422 EMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYK 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I++ L++L++ R+ II +EL ++K + PRR+ +V D+ ED I DM Sbjct: 482 EILDKIRDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDM 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K L Y+AQ+RGG+G+ + R++DF+ +LFI +TH +L FSSLG V Sbjct: 542 VVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P GS +RG+ + N++ L Q E+I ++P + + YV AT G V+ Sbjct: 602 YWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFD---DTRYVFMATAGGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F + +G IA+ LD D ++ V ++D++L + G+ +RF + +R G Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRG+ L +VIS+ + Sbjct: 718 RNARGVRGMKLGAEQKVISLLVADS----------------------------------- 742 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + +LT +E G+GKRTS ++ NR +G+ A + +K N Sbjct: 743 -----------------ENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRN-- 783 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA V ND+I+L++ G +IR V+EIR RAT+GV++ + E++ +ERI Sbjct: 784 GKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIREMGRATQGVILINLDAGEKLAGLERIV 843 Query: 899 ESEI 902 E++ Sbjct: 844 ETDE 847 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 96/213 (45%), Gaps = 14/213 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ PLS + R G V + + D++ + + V+ FS G Sbjct: 647 YVFMATAGGTVKKTPLSEFSRPRTNG--IIAVALDEGDYLIGVALTEGKHDVMLFSDAGK 704 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + P R + + L +++ +++ + N+ V+ AT++G Sbjct: 705 AMR---FDENDVRPTGRNARGVRGMKLGAEQKVISLL-----VADSENMTVLTATENGYG 756 Query: 658 RRNKLSDFIQINR--SGKIAMK-LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ + NR G IA+ ++++ + ++I+L T G +R +S IR Sbjct: 757 KRTSITEYTRHNRGTQGMIAINTNKRNGKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIR 816 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 GR + GV I+L G+++ + ++ D + Sbjct: 817 EM-GRATQGVILINLDAGEKLAGLERIVETDEN 848 >gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044] gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] Length = 877 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ I Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSAAEGDDDIAPEADT 868 Query: 771 EITSLKNDS 779 + +++ Sbjct: 869 DDDIAEDEE 877 >gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 896 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 418/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E +SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+V L + R G + +R+ D + + I + ++ F Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635 S+ G V + + A G I + + + Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760 Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689 ++ T++G +R + ++ +R+ K + + + ++++ Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + + I+L T G VR ++ + GRN+ GVR I A + V+S+ V D + + Sbjct: 821 VEETDQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879 Query: 750 ERICYMKHMSAQRRLIS 766 S + + Sbjct: 880 NSEALDNVESTETSTEA 896 >gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] Length = 878 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 572/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 ITEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH Sbjct: 487 GLLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ + Sbjct: 723 GIKLAGEDAVVSLIV--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 68/430 (15%), Positives = 138/430 (32%), Gaps = 35/430 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + ++R RR + + + Sbjct: 470 EHEKLLDEYKELLEQIAGLLHILGSADRLMEVIREELELVR--DQFGDERRTEITANSSD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDAVVSLIVPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R S++ +R + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGTVAEGDDDIAPEAES 868 Query: 771 EITSLKNDSS 780 + ++ + Sbjct: 869 DDDAVDDADE 878 >gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] Length = 910 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 463/912 (50%), Positives = 637/912 (69%), Gaps = 5/912 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ + V+I EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 1 MTDTTDQTEGPSGQ--VPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR+ G+VMGKYHPHG+AAIYDA RMAQ +S+R+ LI+GQGNFGSV Sbjct: 59 QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL AA LL D+ KDTVDF+P YD S EP VL A +PN+LVNGG Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN E++D + +I P+ LD LM I+ GPDFPTG +ILGR+GI++A Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE+ DR I+V+E+PYQVNKA +LE+IAELVR K I IADLR Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P + L L Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+ +AR LM R Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ L++LIDD I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL + Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G I E L+I++SR R L +++ ELL+V+ + PR T I + + D +DE I MVV Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL +RAQ RGG+GR+ MR +D +T F TH VLFFS G ++ Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP +P A+G+A++NIL G+ +T ++P P+DES WN+L++VFAT GNVRRN Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +L+DF + +G IAMKLD D ++ V TC + +D+ L T+ +C+RF I+ +RVFAG Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+S GVRGI L GD+VIS++++ H +A DER Y+K+ +AQRR + E ++ Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ + ++ ER L+ E+ ILTV+ GFGK +S+Y++R++ R G+GI ++ N Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 A+ A FPV D I+LV+D+G LIR PV+++RI R GV + KDE+V SV + Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897 Query: 899 ESEIVDEAESTE 910 + + E + Sbjct: 898 DDSGDEAGEEQD 909 >gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624] Length = 890 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 395/918 (43%), Positives = 557/918 (60%), Gaps = 67/918 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E K +S+ +EM+ SYL YA++VI+GRA+PD RDG KPVHRR+LF M ++ +WN+ Sbjct: 2 TEFAKETLPISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGDP AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH L D+ K+TVDF PNYDGS +EP+VL R PN+LVNG GGIAVGMATN Sbjct: 122 YTEIRLAKIAHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ V+ NP +D LMEII PDFPT +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHVLKNPGASIDELMEIIPAPDFPTAGIIYGMQGVKDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK ++LE+IAELV EK+I I+ ++DESD+ G Sbjct: 242 MRARCHFEDIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL G +P+ L ++ F+ R EV Sbjct: 302 RVVIELKRGELPEVVLNNLYKQTQLQDTFGMNMVALVGGQPKLCNLKDLIVVFLDHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRSRADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + EI+ LDIL+ R+ I+ +EL +K E RR+ + D+ Sbjct: 482 IVAEYKDVMAEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVEHNAQDLA 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED VVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+IT ++P E S ++ Y Sbjct: 602 ILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSSFPSDHY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT+ G V++ L +F ++G IA+ LD+ D ++ +D++L + G+ VR Sbjct: 662 VFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+ L G VI+M + + Sbjct: 722 FDENDVRPM-GRNARGVRGMMLDDGQSVIAMLVAQDETQNDVNGEAARTS---------- 770 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 +LT +E G+GKRT ++ R KG+ Sbjct: 771 --------------------------------VLTATENGYGKRTPIAEYTRHGRGTKGM 798 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + Sbjct: 799 IAIQQSERN--GKVVAATLVHTDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIALDD 856 Query: 888 DERVVSVERIRESEIVDE 905 ++ ++RI E++ E Sbjct: 857 GTQLSGLQRIVENDANGE 874 >gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] Length = 877 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ I Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDDDIAPEADT 868 Query: 771 EITSLKNDS 779 + +++ Sbjct: 869 DDDIAEDEE 877 >gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] Length = 876 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 385/908 (42%), Positives = 565/908 (62%), Gaps = 67/908 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 K +S+ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Sbjct: 2 TPFAKETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + H LL D+ K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C+ +++NPD D++ L+ +++ PDFPT A+I G +G+ + Y TGRG +V Sbjct: 182 IPPHNLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAALIYGLSGVHDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + I+V E+PYQVNK +LE+IAELV EK+I I+++RDESD+ G Sbjct: 242 MRARTHFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN L++ T LQ F +NMVAL KP L +L F++ R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLDCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W+++ ++ Sbjct: 362 ITRRTVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVE 421 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ +SY S LS+ Q +AILELRL RLTGL +D I E + Sbjct: 422 EMLARALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL++ R+ II +EL +++ + D PRR+ IV ++ ED I EDMVV Sbjct: 482 MDVITDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIEDLIAPEDMVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY KR PL+ YRAQRRGG+G+ M+D+DF+ LF+ +TH +L FSS G VY Sbjct: 542 TLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P G+ +RG+ ++N+ L +GE+I ++P + ++ +V AT G V++ Sbjct: 602 LKVYEVPEGTRNSRGRPIVNLFPLMEGEKINAVLPVQAFD---DDHFVFMATAEGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+ F ++G IA LD D ++ V +D++L + G+ VRFP +R GR Sbjct: 659 ALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRPM-GRE 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG++L +G +VI+M + Sbjct: 718 ARGVRGMNLEEGQRVIAMLVAKD------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E +LT +E G+GKRT ++ R KG+ A S N G Sbjct: 741 ---------------EELSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GK 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V ++D+++L+S G LIR V +IR RAT+GV + + + + +E++ ES Sbjct: 784 LVGACLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEGTSLAGIEKVAES 843 Query: 901 EIVDEAES 908 E+ + A Sbjct: 844 EVDEPAAD 851 Score = 77.9 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 102/248 (41%), Gaps = 14/248 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + D D + + I ++ V+ F Sbjct: 640 FDDDHFVFMATAEGTVKKTALTAFSNPRKAG--IIAANLDDGDRLIGVAITDGNSDVMLF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG +N L +G+R+ ++ + L V+ AT Sbjct: 698 SDAGKAVRFPEGDVRPMGREARGVRGMN---LEEGQRVIAMLVAKD-----EELSVLTAT 749 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R K + + + D +++ + ++++L + G +R Sbjct: 750 ENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRTR 809 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + IR GR + GV I+L +G + + V ++ D ++ + D Sbjct: 810 VQDIREL-GRATQGVTLINLDEGTSLAGIEKVAESEVDEPAADVPDDGIAPADSEPAVDG 868 Query: 770 EEITSLKN 777 + L Sbjct: 869 MQTDDLPE 876 >gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] Length = 910 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 463/912 (50%), Positives = 637/912 (69%), Gaps = 5/912 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ + V+I EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 1 MTDTTDQTEGPSGQ--VPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR+ G+VMGKYHPHG+AAIYDA RMAQ +S+R+ LI+GQGNFGSV Sbjct: 59 QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL AA LL D+ KDTVDF+P YD S EP VL A +PN+LVNGG Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN E++D + +I P+ LD LM I+ GPDFPTG +ILGR+GI++A Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE+ DR I+V+E+PYQVNKA +LE+IAELVR K I IADLR Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P + L L Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+ +AR LM R Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ L++LIDD I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL + Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G I E L+I++SR R L +++ ELL+V+ + PR T I + + D +DE I MVV Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL +RAQ RGG+GR+ MR +D +T F TH VLFFS G ++ Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP +P A+G+A++NIL G+ +T ++P P+DES WN+L++VFAT GNVRRN Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +L+DF + +G IAMKLD D ++ V TC + +D+ L T+ +C+RF I+ +RVFAG Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+S GVRGI L GD+VIS++++ H +A DER Y+K+ +AQRR + E ++ Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ + ++ ER L+ E+ ILTV+ GFGK +S+Y++R++ R G+GI ++ N Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 A+ A FPV D I+LV+D+G LIR PV+++RI R GV + KDE+V SV + Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897 Query: 899 ESEIVDEAESTE 910 + + E + Sbjct: 898 DDGGDEAGEEQD 909 >gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20] gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 896 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 419/908 (46%), Positives = 572/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E ++SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 26/257 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+V L + R G + +R+ D + + I + ++ F Sbjct: 643 FSADKFIFMATASGVVKKVSLDAFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645 S+ G V + + A G I + + + E E+ + Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLD 760 Query: 646 -------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689 ++ T++G +R + ++ +R+ K + + + ++++ Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + + I+L T G VR ++ + GRN+ GVR I A + V+S+ V D + + Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879 Query: 750 ERICYMKHMSAQRRLIS 766 S + + Sbjct: 880 NSEALDNVESTETSTEA 896 >gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] Length = 889 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 471/885 (53%), Positives = 619/885 (69%), Gaps = 10/885 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SITDEM+NSYL YA++VI+ RAIPDLRDGLKPVHRRILF M ++G +K Y K AR Sbjct: 1 MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 61 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A ++L D+ KDTVDF+ NYDG +EP VL R+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+IDNPD+ ++ L++ + GPDFPTG V+LGR+G + AY GRGS +IR +H+E+ Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLLGRSGARKAYTEGRGSCIIRAKTHVEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNK+AM+EKIAE VREK+I I+ ++DESDR G RVV+ELKR A Sbjct: 241 LRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LNQL+R+T +Q+ F NM+ALNG +PE TL G L F++FREEVV RRT YLL Sbjct: 301 TPDVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLYGFLSNFISFREEVVARRTAYLLR 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM R W A +I I LIDD + Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDDPT 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L+IL SR R++ Sbjct: 421 HRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 480 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL VK+ PRRT IV+ DMEDED I R +MVVT++ GY+KR PL YRA Sbjct: 481 QIISDELREVKELFAVPRRTEIVDWSGDMEDEDLIERAEMVVTITQSGYIKRTPLEDYRA 540 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ +D+D VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA+ Sbjct: 541 QKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKAI 600 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP DE W +L +VFAT G VRRN LSDF + +GKIAMK Sbjct: 601 VNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNVKSNGKIAMKF 660 Query: 679 ---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + +++ C E+D++L T+ G+ +RF +RVF R+SVGVRG+ L + D+V Sbjct: 661 EGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEV 720 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 SM ++ A+ DER Y+K A E T+ + + + + + ++R E+ Sbjct: 721 ASMFVLPTFPAESDERASYLKMRRAM-----AGDVEQTTDEEEGNADMPLPQDRYAEMSA 775 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G G +SS+D+ + R G G+ A + K G ++A FPV +DQ++L Sbjct: 776 AETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE--KTMRTGEIIAAFPVEMDDQVML 833 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + KG IRVPV+ I SR+ GV +F+T K E VVSV RI E Sbjct: 834 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAEQ 878 >gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] Length = 873 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 399/924 (43%), Positives = 571/924 (61%), Gaps = 78/924 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ Sbjct: 2 DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD AA R Sbjct: 62 PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTECRL K A LL DL K+TVDF PNYDG +EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG + V+ N D +D L+EII PDFPTG +I G +G+++ Y TGRG +V Sbjct: 182 IPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ +R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G Sbjct: 242 MRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EV Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P A+ +LM R+W++S ++ Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y I +DG LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 NE + +I + LDIL+ R+ II EL K+E RR+ I D+ Sbjct: 482 VNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLGT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +DMVVT+SH GY+K P+S YRAQ+RGG+G+ + +D+D++ LFI +TH + Sbjct: 542 EDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G +Y KVW +P GS +RGK ++N+ L GE+IT I+P E+ + + Y+ Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDHYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI++ + + Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++Q +LT +E GFGKRT ++ R KG+ Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V+ +D+I+L++ G LIR V EIR RAT+GV + + Sbjct: 789 AIQTSERN--GKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846 Query: 889 ERVVSVERIRES--EIVDEAESTE 910 ++ ++RI ES E+ D+ TE Sbjct: 847 TKLSGLQRILESDVEVDDDQSGTE 870 >gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi] gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi] Length = 902 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 460/894 (51%), Positives = 636/894 (71%), Gaps = 5/894 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I++AF+ FR+EV++RR Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S+ + I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR QRRGGKG+ G +++ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+ P Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG+AL+NI L +GE IT IMP P + N +VF T +GN+RRN L+DF I +G Sbjct: 602 ARGRALVNIFPLAEGETITNIMPLPSEN--DENQNIVFTTAYGNIRRNSLADFHYIPSNG 659 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA+KLD D+++SV+ C + + + L+T+ G+ +RF +S +R F RNS GVRGI LAK Sbjct: 660 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM I+ + + Y+K A+R L + I S + + I E + Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L + E+FILT++E GFGKRTS+Y++RI+NR G GI + N G +VA FPV D Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D V + G R +S R R+ D V + + + + G Sbjct: 681 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 730 Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 KE ++P+ L + I + + N +++ T Sbjct: 731 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 790 Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++ NR G + +++ Q ++I+L T G+ +R Sbjct: 791 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 850 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ IR AGR++ GV ++V+S+A + D+ D +S+Q Sbjct: 851 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 901 >gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c] gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c] Length = 893 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 402/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A + E + +D Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 761 NTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAEST 909 I DE E Sbjct: 879 IPDETEDD 886 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ ++ + G R P+SA R R G ++ + D + + +V D Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + S + + ++ + Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G K+T +F R +G A ++ ++ AL+ V + ++L + G +R Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 N +R R GV + E VVS+ + VD E E Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750 >gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] Length = 923 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 463/906 (51%), Positives = 625/906 (68%), Gaps = 14/906 (1%) Query: 1 MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M++ + +++ +SITDEM+ SYL YA++VI+ RAIPDLRDGLKPVHRR Sbjct: 1 MSDTPDTPEDDNAPAPYVYDGPQISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 IL+ M + G +K Y K AR G+VMGKYHPHG+ AIYDAL RMAQD+S+ L L++GQG Sbjct: 61 ILYAMYETGNSHDKSYRKSARPVGDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS+DGD AA RYTE R+ K A F+L D+ KDTVDF+ NYDG +EP VL +R+PN+L Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNML 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235 VNG GGIAVGMATNIP HNLGEVVD +A+ID+PD+ + L+E + GPDFPTG ++LGR+ Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLSSEDLIEYVPGPDFPTGGIMLGRS 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 G + AY GRGS+++R + +E+ DR I++ EIPYQVNKA M+EKIAE VREK+I Sbjct: 241 GARKAYLEGRGSVIVRAKTRVEEIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+ ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL Sbjct: 301 ISHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLR 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 L +FV FREEVV RRT + L KAR+R+H+L GLA+AV N+DE+V IR S + AR Sbjct: 361 RFLTSFVDFREEVVARRTAFELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEARE 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM R W A I + I+LIDD ++T DGT LSE Q RAILELRL RLT +G ++ + Sbjct: 421 KLMTRRWPAESILEYIELIDDPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTD 480 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L +I++ L+IL SR R++ II+ EL V+D+ PRRT IV+ DM+DED I R Sbjct: 481 ELQELAGKIRDYLEILGSRERIMQIIRDELHEVRDQFAVPRRTAIVDWSGDMDDEDLIER 540 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 EDMVVTV+ GY+KR PL+ +RAQRRGGKG G+ ++ED VT LF+ +THT +LFF++ Sbjct: 541 EDMVVTVTSGGYIKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTD 600 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G YK K WRLP GS ++GKA++NIL + G + I+P DE W +L V FAT G Sbjct: 601 GMAYKLKTWRLPQGSRTSKGKAIVNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAG 660 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISA 712 VRRN LSDF + +GKIAMK + ++++V ++D++L T G+ +RF + Sbjct: 661 TVRRNALSDFTNVKSNGKIAMKFEGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRAND 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +RVF R S GVRGI L D V+SM+++ H +AD ER Y+K RR ++G ++ Sbjct: 721 VRVFNSRASTGVRGIKLNGDDTVVSMSVIRHFEADPAERAAYLK----MRRAMAGLADDA 776 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 +D+ G +S+ER E+ E ILT++ +G GK +SS+D+ + R G G+ A D Sbjct: 777 EVDDDDAVEAGQLSQERYAEMSAAENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMD- 835 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 K G +V FPV+ +DQI+LV+++G IRVPV I SR+ GV +F T K+E V+ Sbjct: 836 -KAMRGGEIVTSFPVDIHDQIMLVTNQGQSIRVPVEGISFRSRSAGGVKVFDTGKNEMVM 894 Query: 893 SVERIR 898 SV I Sbjct: 895 SVAWIA 900 >gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] Length = 878 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 ITEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------IMTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 93/241 (38%), Gaps = 15/241 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ + R G V +RD+D + + + + FS+ G V + Sbjct: 650 TASGTVKKTALTEFSRPRSAG--IIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+R+ +++ ++ ++ T++G +R Sbjct: 708 ESAVRAMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 AEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV I A+ + V+ + V A+ + + + + D Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSLAEGDEDIAPEVDAHDEAPEADD 877 Query: 780 S 780 Sbjct: 878 E 878 >gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895] gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895] Length = 878 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LKEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D V+S+ I Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT+ ++ +R +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 64/418 (15%), Positives = 131/418 (31%), Gaps = 39/418 (9%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR + + + N+ Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRD----QFGDERRTEITANS 525 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +DI + + S L++ + + + D I L + Sbjct: 526 ADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 Query: 481 GIE---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 + + + G + ++++ R T I+ E + Sbjct: 586 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN 645 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 V + G VK+ L+ + R G + DE DL S V+ Sbjct: 646 -------VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVML 696 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G V + K + A G I ++ ++ Sbjct: 697 FSAAGKVVRFKEDAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTV 747 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R ++ +R + + + ++ + I++ T G VR Sbjct: 748 TQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRT 807 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +S I GRN+ GV I A+ + V+ + V D + + Sbjct: 808 RVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDEDIAP 864 >gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 896 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 423/916 (46%), Positives = 576/916 (62%), Gaps = 43/916 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E ++SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEA-------ESTE 910 DE ESTE Sbjct: 876 DEDENGEALDNVESTE 891 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 26/257 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+V L + R G + +R+ D + + I + ++ F Sbjct: 643 FSADKFIFMATASGVVKKVSLDAFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645 S+ G V + + A G I + + + E E+ + Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLD 760 Query: 646 -------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689 ++ T++G +R + ++ +R+ K + + + ++++ Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + + I+L T G VR ++ + GRN+ GVR I A + V+S+ V D + + Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879 Query: 750 ERICYMKHMSAQRRLIS 766 S + + Sbjct: 880 NGEALDNVESTETSTEA 896 >gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] Length = 893 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 403/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL S LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A + E + +D Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 761 NTADSVHIGPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAEST 909 I DE E Sbjct: 879 IPDETEDD 886 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ ++ + G R P+SA R R G ++ + D + + +V D Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + S + + ++ + Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G K+T +F R +G A ++ ++ AL+ V + ++L + G +R Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 N +R R GV + E VVS+ + VD E E Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750 >gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22] gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22] Length = 877 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ I Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDDDIAPEADT 868 Query: 771 EITSLKNDS 779 + +++ Sbjct: 869 DDDIAEDEE 877 >gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] Length = 886 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 415/901 (46%), Positives = 557/901 (61%), Gaps = 68/901 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L+++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K +H +L DL K+TVDF NYDG+ + P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A++ +PD+ +D LME I GPDFPTGA+I GR GI AY TGRG I +R Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAIINGRAGIIQAYRTGRGRIYVRAR 245 Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I ++ I+V EIPYQ+NKA ++E+IAELV+EK+I I +LRDESD+ G RVVI Sbjct: 246 AEVIHDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG DV+LN LY T LQS+F +NMVAL +P+ L IL+AFV R EVV RR Sbjct: 306 ELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQPKILNLKEILEAFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R H+L GLAIA+AN+D V+ +I+ SP+ A+ +L+ RSW D+ +++ Sbjct: 366 TVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + DG YLS Q +AILELRL RLTGL + + NE EI Sbjct: 426 RAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLREI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L+ILS RL +I++EL + E RRT I D+ ED I ED VVT+SH Sbjct: 486 AEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEEDRVVTISH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL+ Y+AQRRGG G+S ++DEDFV L I STH ++L FS+LG VY KV+ Sbjct: 546 GGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ +RG+ +IN+L L +GER+T+I+P + Y+ AT G V++ L + Sbjct: 606 QIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYT---EGHYIFMATASGTVKKTALIN 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G A++L+ D ++ T + D++L + G+ VRF +R GR + GV Sbjct: 663 FARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L G ++IS+ I Sbjct: 722 RGIKLGDGHEMISLII-------------------------------------------- 737 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +LTVSE G+GKRT +F R KG+ A S+ N G LV Sbjct: 738 ---------PREGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERN--GTLVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D DQ++L+S++GTL+R +EI + R T+GV + T DE +VSVERI E E D Sbjct: 787 VQVFDGDQLMLISNQGTLVRTRADEISVLGRNTQGVRVIRTKTDESLVSVERIEEPEDDD 846 Query: 905 E 905 E Sbjct: 847 E 847 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 15/260 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + G VK+ L + QR G + + + D + + + V+ Sbjct: 638 EDYTEGHYIFMATASGTVKKTALINFARQRSVG--LRALELEEGDVLVGTAVTTGDCDVM 695 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 SS G + K + ARG + + L G + +++ V+ Sbjct: 696 LLSSEGKAVRFKEGDVRAMGRTARG---VRGIKLGDGHEMISLI------IPREGGRVLT 746 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 +++G +R ++S+F R K + + + + + + ++L + G VR Sbjct: 747 VSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERNGTLVGAVQVFDGDQLMLISNQGTLVR 806 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 I V GRN+ GVR I + ++S+ + + D + + + + Sbjct: 807 TRADEISVL-GRNTQGVRVIRTKTDESLVSVERIEEPEDDDELATEALSEGVDETAAPAA 865 Query: 768 DTEEITSLKNDSSVEGNISE 787 ++ + E + Sbjct: 866 TEDDQGEQASPQEPEEPEED 885 >gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12] gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12] Length = 893 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 402/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A + E + +D Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 761 NTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAEST 909 I DE E Sbjct: 879 IPDETEDD 886 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ ++ + G R P+SA R R G ++ + D + + +V D Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + S + + ++ + Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G K+T +F R +G A ++ ++ AL+ V + ++L + G +R Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 N +R R GV + E VVS+ + VD E E Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750 >gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] Length = 907 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 476/911 (52%), Positives = 630/911 (69%), Gaps = 14/911 (1%) Query: 1 MTEHIISSDE----EEEKGITS---VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + + ++ + VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MSDTPETPENMDETPPDRPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M + G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILYAMHETGNTHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A LL D+ K+TVDF+ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAASLLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEVVD +A+ID+PD+ + L+E + GPDFPTG V+LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTSEQLIEYVPGPDFPTGGVMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + E+ DR IVV EIPYQVNKA+M+EKIAE VREKRI Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRTEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +A ++DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F NM+ALNG +PE+ T Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + A Sbjct: 361 LRRFLTSFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W AS+I+ + LIDD + DGT L+EVQ RAIL+LRL RLT +G ++ Sbjct: 421 REKLMTRRWPASEIEGYLRLIDDPLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE LDILSSR R++ II EL SV+++ PRRT IV+ DMEDED I Sbjct: 481 TDELEELAAKIKEYLDILSSRERIMSIIGDELRSVREQFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF+ Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP S +GKA++NIL + G I IMP + W NL +VFAT Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G+VRRN+LSDF + R+GKIAMKL E+++ C+++ D++L T G+ +RF + + Sbjct: 661 AGDVRRNRLSDFTNVRRNGKIAMKLPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDV 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 RVF R S GVRGI L GD V+SM+++ H +AD DER Y+K A + + Sbjct: 721 RVFNSRESTGVRGIKLTNGDHVVSMSVIRHFEADPDERAAYLKMRRAVAGIA-----DDG 775 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 D + G+IS+ER ++ E ILT++ G GK +SS+D+ + R G G+ A D Sbjct: 776 ETDEDEATPGSISQERYAQMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMD-- 833 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LVA FPV+ +DQI+L + KG IRVPV+ I SR+ GV +F+T K E VVS Sbjct: 834 RAMRGGELVASFPVDLDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVS 893 Query: 894 VERIRESEIVD 904 V I + + Sbjct: 894 VAWIADQGEEE 904 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 17/255 (6%) Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R+ F R+ + D DE + +E+ ++ T G R P++ R Sbjct: 513 RSVREQFAVPRRTEIVDWSGDMEDE----DLIEREDMVVTVTSGGYIKRTPLADFRAQK- 567 Query: 719 RNSVGVRGISLAKGDQVISMAIVLH------ADADYDERICYMKHMSAQRRLISGDTEEI 772 R G+ G+ + D V ++ + D + R G Sbjct: 568 RGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKAIVN 627 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 I + + + I+ + G +R DF R+GK A + Sbjct: 628 ILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNVRRNGK--IAMKL 685 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERV 891 + LV ++++ ++LV++ G IR ++R+ SR + GV + V Sbjct: 686 PE---DVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIKLTNGDHV 742 Query: 892 VSVERIRESEIVDEA 906 VS+ IR E + Sbjct: 743 VSMSVIRHFEADPDE 757 Score = 46.3 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 E+++ ++ I+L T GQ +R P+ I F R++ GV+ + KG++V+S+A Sbjct: 838 GGELVASFPVDLDDQIMLATSKGQSIRVPVDGI-SFRSRSAGGVKVFNTGKGEEVVSVAW 896 Query: 741 VLHADADYDE 750 + + E Sbjct: 897 IADQGEEETE 906 >gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23] gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23] Length = 893 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 403/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL S LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A + E + +D Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 761 NTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAEST 909 I DE E Sbjct: 879 IPDETEDD 886 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ ++ + G R P+SA R R G ++ + D + + +V D Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + S + + ++ + Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G K+T +F R +G A ++ ++ AL+ V + ++L + G +R Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 N +R R GV + E VVS+ + VD E E Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750 >gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45] gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45] Length = 915 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 478/920 (51%), Positives = 632/920 (68%), Gaps = 16/920 (1%) Query: 1 MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 MT+ + ++E +SI DEM++SYL YA++VI+ RAIPDLRDGLKPV Sbjct: 1 MTDTPEPPENDDEMSGPERPRYSGPGISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRRIL+ + + G +K Y KCA G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+ Sbjct: 61 HRRILYTLWENGQTKSKSYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLID 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGS+DGDPPAA RYTE RL++ A LL+D+ KDTVDF PNY EPVVL ARYP Sbjct: 121 GQGNFGSMDGDPPAAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 NVLVNG GIAVGMAT IP HNLGEV+D +A+I+ PD+ + L+E I PDFPTG VIL Sbjct: 181 NVLVNGAEGIAVGMATRIPPHNLGEVIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR+G + AY GRGS++IR + IE+ DR IV+ EIPYQVNKA M+E+IAE VR+K+ Sbjct: 241 GRSGARKAYLEGRGSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 I IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q F NM+ALNG +PE+ Sbjct: 301 IEGIAHVQDESDRSGVRVVVELKRDATAEVVLNQLFRFTPMQVSFGCNMLALNGGRPEQL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL L AF+ FRE+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV IR S + Sbjct: 361 TLRAFLTAFLDFREDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASADAAE 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM R W A +I I LIDD ++ + DGT LSE Q RAILELRL RLT LG + Sbjct: 421 ARDKLMTRRWPAHEIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKE 480 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + +EL L +IKE L+IL SR R++ II E+++VK++ PRRT I + DM+DED Sbjct: 481 VTDELEELAKKIKEYLEILGSRERIMEIITNEMIAVKEQFAVPRRTEIADWAGDMDDEDL 540 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG ++++D VT LF+ +THT +LFF Sbjct: 541 IEREDMVVTVTAGGYIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFF 600 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G YK K WRLP G ++GKA++NIL + QG + IMP DE W++L +VFAT Sbjct: 601 TTEGMAYKLKCWRLPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFAT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 G+VRRN+LSDF + R+GKIAMK + DE ++ C++++DI+L T G+ +RFP Sbjct: 661 SKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICSEDDDIMLVTDSGRAIRFP 720 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +RVF RNS GVRG+ L GD+V+SM+++ H +A+ DER Y+K A L Sbjct: 721 VPDVRVFNSRNSTGVRGVRLLNGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLA---D 777 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + TS + + + + +S+ER E+ E ILT++ KG GK +SS+D+ I R G G+ A Sbjct: 778 DAETSDEEEGNADSRLSQERYAEMTAAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTA 837 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 + S G +VA FPV DQI+L + G IRVPV+ I SR GV +F+T E Sbjct: 838 WEKSMR--GGEIVASFPVEKGDQIMLATSTGQSIRVPVDGISFRSRGAGGVRVFNTRAGE 895 Query: 890 RVVSVERIRESEIVDEAEST 909 VVSV I + DE Sbjct: 896 TVVSVAWIADQGDEDEDAEA 915 >gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] Length = 871 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 411/906 (45%), Positives = 573/906 (63%), Gaps = 70/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ C+A++DNP++ LD +MEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAIINGRAGIIQGYRTGKGRVVIRAR 245 Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE +R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR ADVILN LY +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 EIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ ++W +K +++ Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ D LS Q +AILELRL RLT L +D I E L I I Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ ELL +K + RRT I D+ ED I E++VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y+AQRRGGKG+S ++DEDFV+ L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S +RG+ +INIL L +GE I ++P E YV AT++G V++ L+ Sbjct: 606 QLPLASRISRGRPIINILPLAEGEEINAMLPVREY---QEGFYVFMATRNGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ LD D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRP-TGRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + + VIS+ + Sbjct: 722 RGIRIEEDQAVISLIVAHPNGT-------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 744 ---------------ILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERN--GKVVRS 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VND+D+ +L++DKGTL+R V+E+ I R T+GV + + + E VV +++I ++ D Sbjct: 787 VQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKI--EDLGD 844 Query: 905 EAESTE 910 E++ + Sbjct: 845 ESDELD 850 Score = 74.4 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 15/236 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+VPL+ + R G + D D+ ++ F+ G Sbjct: 645 YVFMATRNGTVKKVPLNAFSRPRSNGIIAVDLDENDRLVGVDI--TDGTRDIMLFTDAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + ++ ARG I RI + N ++ AT+HG Sbjct: 703 VIRFDESKVRPTGRTARGVRGI---------RIEEDQAVISLIVAHPNGTILTATEHGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R + ++ R G+ + + +++ ++ +L T G VRF +S + Sbjct: 754 KRTDIDEYRVSGRGGQGVISIQVTERNGKVVRSVQVNDSDEAMLITDKGTLVRFRVSEL- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 GRN+ GVR I+++ G+ V+ M + + DE S D Sbjct: 813 SIIGRNTQGVRLINVSSGELVVGMQKIEDLGDESDELDVDTDEASDIGNSDEHDDN 868 >gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] Length = 923 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 504/914 (55%), Positives = 649/914 (71%), Gaps = 14/914 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + ++ V+I DEM+ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M Sbjct: 1 MDEDLPAAPSGPM-----VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K A + G+VMG+YHPHG++AIYDALARMAQ +S+ L L++GQGNFGS+ Sbjct: 56 HEGGYSKDKAYKKSANVVGDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSM 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ A LL D+ KDTV+FR NYDGS QEPVVL ARYPN+LVNG G Sbjct: 116 DGDPPAAMRYTEIRMDHPAEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAG 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD VA++D PDI L+E + PDFPTG I+GR+G + A Sbjct: 176 GIAVGMATNIPPHNLNEVVDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKA 235 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 GRGS+++R + IE RE I+V EIPYQVNKA M+EKIAELVR+KRI I+DLR Sbjct: 236 LLEGRGSVILRAKTSIEDIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIELK+ A+A+VILNQLYR++ LQ+ F VNM+AL G +P++ L L+ Sbjct: 296 DESDRSGVRVVIELKKDANAEVILNQLYRWSPLQTSFGVNMLALIGGRPQQAGLRVFLET 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+EVVVRRTK+ L KARDRAHVL+GLA+AVAN+DE++ +IR +P+P+TAR++L + Sbjct: 356 FIHHRKEVVVRRTKFDLRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W A D+ L++L+ D I DG + L+E Q +AIL+LRL RLT LGRD+I +E N L Sbjct: 416 AWPAKDVAPLVELVADPRSQI-RDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKL 474 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL S +R+ II+ ELL K RR+ I+EG L +EDED I REDMVV Sbjct: 475 AETIADLLDILRSPTRIRDIIRNELLDSKASFGVERRSAIIEGDLGIEDEDLIPREDMVV 534 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GYVKR LS YRAQ RGGKGR+G+ M+DEDFV LF+ STH +LFFSS G VYK Sbjct: 535 TLTHGGYVKRTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYK 594 Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K WRLP+G+P +GK L N+L LN G IT++M PEDE SW+ V+FAT G VRR Sbjct: 595 TKTWRLPLGAPNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRR 654 Query: 660 NKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 NKLSDF+Q+NR+GKIAMKLD +IL V C ++ D+LL + G+ +RFP+ +RVFA Sbjct: 655 NKLSDFVQVNRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFAS 714 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSL 775 RNS GVRGI L + D++ISMAI+ H D DE YM+H +A RR + ++ Sbjct: 715 RNSTGVRGIRLKENDRLISMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPE 774 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ + +S ER EL E+F+LTV++ G GKR+S+YD+R+ R +G+ A D+SK+ Sbjct: 775 DGEAGADVALSPERIAELGAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKV 834 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 L A FPV D D ++ V+D G LIR PV+ +RIA+RATKGV + A+ E+VVSV Sbjct: 835 K---ELAACFPVIDGDTVMAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVV 891 Query: 896 RIRESEIVDEAEST 909 RI ESE AE Sbjct: 892 RIAESEDDASAEED 905 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 5/239 (2%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + V+ VS G R P+ R + +GV L ++ + + Sbjct: 688 EDQDVLLVSAGGRAIRFPVGDVRV--FASRNSTGVRGIRLKENDRLISMAILNHIDVTTD 745 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 Y + + A+++ + + P E +V+ + Sbjct: 746 EARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPERIAELGAAEEFVLTVAQD 805 Query: 655 GNVRRNKLSDFIQI-NRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G +R+ D+ + + +A + E+ + + ++ T GQ +RFP+ Sbjct: 806 GLGKRSSAYDYRVMGRGNQGVAAHDMSKVKELAACFPVIDGDTVMAVTDGGQLIRFPVDT 865 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R A R + GVR I LA+G++V+S+ + ++ D + A + + E Sbjct: 866 VR-IAARATKGVRLIRLAEGEKVVSVVRIAESEDDASAEEDGGEAGDAPNTPDAPEDEN 923 >gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] Length = 908 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 480/914 (52%), Positives = 639/914 (69%), Gaps = 19/914 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+ + + +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M Sbjct: 1 MDENKPERPKYDGP---TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+ Sbjct: 58 HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K A +L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG G Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D +A+I++PD+ + L++ + GPDFPTG V+LGR+G + A Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS+VIR + +E+ DR IVV EIPYQVNKAAM+EKIAE VREK+I ++ ++ Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L + Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI I LIDD ++T+ DGT LSEVQ RAILELRL RLT +G ++ +EL L Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE L+ILSSR R+LGII EL V+D PRRT IV+ DMEDED I REDMVV Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ GY+KR PL +RAQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K WRLP G ++GKA++NIL + G I IMP + W NL VVFAT G+VRRN Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +LSDF + R+GKIAMKL ++++ C++++D++L T G+ +RF + +RVF Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717 Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R S GVRGI L ++GD+V+SM+++ H A+ ER ++K ++ E+ +N Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGG------EVAEDEN 771 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 EG++SEER QE+ ++T++ G G TS++D+R+S R G+G+ A Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMK------ 825 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GA+VA FPV DQI+L + KG IR PVN I SR+ GV +F+TAK E VVSV I Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885 Query: 898 RESEIVD-EAESTE 910 E + D E ++E Sbjct: 886 AERDDEDAEVPTSE 899 >gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 900 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTV+FRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ ++NP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKR A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S+ + I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR QRRGGKG+ G +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+ P Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG+AL+NI L+ GE IT IMP P + N +VFAT +GN+RRN L+DF I +G Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPSEN--DENQNIVFATAYGNIRRNSLADFHYIPSNG 659 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI L K Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM I+ + + Y+K A+R L + I S + + I E + Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L + E+FILT++E GFGKRTS+Y++R++NR G GI + N G +VA FPV D Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VNEIRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 >gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] Length = 908 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 480/914 (52%), Positives = 639/914 (69%), Gaps = 19/914 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+ + + +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M Sbjct: 1 MDENKPERPKYDGP---TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+ Sbjct: 58 HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K A +L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG G Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D +A+I++PD+ + L++ + GPDFPTG V+LGR+G + A Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS+VIR + +E+ DR IVV EIPYQVNKAAM+EKIAE VREK+I ++ ++ Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L + Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A DI I LIDD ++T+ DGT LSEVQ RAILELRL RLT +G ++ +EL L Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE L+ILSSR R+LGII EL V+D PRRT IV+ DMEDED I REDMVV Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ GY+KR PL +RAQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K WRLP G ++GKA++NIL + G I IMP + W NL VVFAT G+VRRN Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +LSDF + R+GKIAMKL ++++ C++++D++L T G+ +RF + +RVF Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717 Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R S GVRGI L ++GD+V+SM+++ H A+ ER ++K ++ E+ +N Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGG------EVAEDEN 771 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 EG++SEER QE+ ++T++ G G TS++D+R+S R G+G+ A Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMK------ 825 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GA+VA FPV DQI+L + KG IR PVN I SR+ GV +F+TAK E VVSV I Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885 Query: 898 RESEIVD-EAESTE 910 E + D E ++E Sbjct: 886 AERDDEDAEVPTSE 899 >gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1] gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1] Length = 919 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 477/920 (51%), Positives = 621/920 (67%), Gaps = 17/920 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 MT+ + E+ S+ I+ EM+ S+L YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MTDTPEPPENGEDTLPERPEYSGPSIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRILF M + G K Y K AR G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILFAMHETGNTHEKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ A +LL+D+ KDTVDF+ NYDG QEP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D C A+I+ PD+ + L+E + PDFPTG +ILG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIILG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R+G + AY GRGS++IR + E+ DR IV+ EIPYQVNKA+M+E+IAELVR+K+I Sbjct: 241 RSGAQKAYIEGRGSVIIRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 I+ + DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F NM+ALNG KPE+ T Sbjct: 301 DGISGVADESDRIGVRVVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALNGGKPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L G L +F+ FREEVV RRT + L KARDRAHVL GLA+AV+N+DEVV IR S + A Sbjct: 361 LRGFLTSFLDFREEVVARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LM R+W A +I I LIDD ++ DGT LSE Q RAILELRL RLT LG ++ Sbjct: 421 RAALMTRAWPAEEILPFIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IK+ L IL+SR R+L II EL V+ + RRT IVE DM+DED I Sbjct: 481 TDELEELAGKIKDYLAILASRERILEIISNELAEVRAKFAVDRRTEIVEWSGDMDDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 R DMVVT++ GY+KR PL+ +RAQ+RGGKG +G M+D+D VT +F+ +THT +LFF+ Sbjct: 541 ERSDMVVTITQGGYIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP GS +RGKA++NIL + G I IMP DE W+ L VVF T Sbjct: 601 TGGMVYKLKTWRLPSGSRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTD 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRN LSDF + R+GKIAMK + E +++ + ++D++L TK G+ +RFP Sbjct: 661 RGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPA 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R S GVRGI L K D+V+SM+I+ H DA+ ER Y+K R + Sbjct: 721 TDVRVFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASERAAYLKQ-----RRLMAGVT 775 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 E D EG++S ER E+ E ILT++ G GK +SS+D+ + R G+G+ A Sbjct: 776 EEAETDEDDVPEGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAI 835 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K G L+A FPV +DQI+L + G IRVP++ I SR+ GV +F+TAK E Sbjct: 836 D--KAMRGGTLIASFPVEMDDQIMLATSTGQSIRVPIDGISFRSRSAGGVKVFNTAKGED 893 Query: 891 VVSVERIRESEIVDEAESTE 910 +VSV I + D E Sbjct: 894 IVSVAYIADQGDEDADVIDE 913 Score = 51.3 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 49/279 (17%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTH 586 + ++ E VV + G V+R LS + R GK E + + + I S Sbjct: 644 DRDEEHWDELQVVFCTDRGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASND 703 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE------ 640 V+ + G + + +R + + L + + + ++ + Sbjct: 704 DDVMLVTKQGRAIRFPATDVR--VFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASER 761 Query: 641 ------------------------------------SSWNNLYVVFATKHGNVRRNKLSD 664 S ++ T G + + D Sbjct: 762 AAYLKQRRLMAGVTEEAETDEDDVPEGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHD 821 Query: 665 F--IQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + G A+ K +++ ++ I+L T GQ +R PI I F R++ Sbjct: 822 YPVRGRGGQGVSAIDKAMRGGTLIASFPVEMDDQIMLATSTGQSIRVPIDGI-SFRSRSA 880 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 GV+ + AKG+ ++S+A + + + I A Sbjct: 881 GGVKVFNTAKGEDIVSVAYIADQGDEDADVIDEDPAPDA 919 >gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont] Length = 876 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 404/904 (44%), Positives = 578/904 (63%), Gaps = 68/904 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EIAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K + LL DL K+TVDF PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP HN Sbjct: 127 MAKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A I++ +I ++ LME I GPDFPT A I GR GI+ AY TGRG I IR Sbjct: 187 LTEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ TL I++AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL++++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR++ GVR Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRSASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIRLAEGDKVVSLIVPREEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G +V Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGTV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D+DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ + +E Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAKPVEEEE 847 Query: 906 AEST 909 + + Sbjct: 848 LDGS 851 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 15/239 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L + R G + +R++D + + + + + + FS+ G V + Sbjct: 650 TADGTVKKTALQEFSRPRSAG--IIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+++ +++ ++ T++G +R Sbjct: 708 ESAVRAMGRSA---SGVRGIRLAEGDKVVSLI------VPREEGAILTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + V + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVVGTVQVVDSDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 N+ GV I A+ + V+ + V + + + + + D + + + Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAKPVEEEELDGSVAEGENDIAPEVDSDDDAPETDDEE 876 >gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 896 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 418/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E +SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+V L + R G + +R+ D + + I + ++ F Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635 S+ G V + + A G I + + + Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760 Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689 ++ T++G +R + ++ +R+ K + + + ++++ Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + + I+L T G VR ++ + GRN+ GVR I A + V+S+ V D + + Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879 Query: 750 ERICYMKHMSAQRRLIS 766 S + + Sbjct: 880 NSEALDNVESTETSTEA 896 >gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6] gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6] Length = 885 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 383/916 (41%), Positives = 551/916 (60%), Gaps = 76/916 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L DL K+TVDF PNYDGS +EP+VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ ++ LMEII PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGIIYGINGVREGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQPKLCNLKQLLEIFLEHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+DE + I+ SP P A+ LM +SW++S ++ Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSVVR 421 Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + +DG LS+ Q IL++RL RLTGL +D I Sbjct: 422 EMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED 529 E + +I + LDIL+ +R+ II EL +V+ E RR+ + + ++ Sbjct: 482 VGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQELGT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PL+ YRAQ+RGG+G+ +D+D+V +LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWM 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648 L FS+ G VY KVW +P G +RGK ++N+ L E+I ++P + S + Y+ Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADHYI 661 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 T G V++ L DF ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 662 FMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GVRG++L +G VI+M + Sbjct: 722 DEEDVRPL-GRQARGVRGMALDEGQSVIAMLVAED------------------------- 755 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 756 ---------------------------ETQSVLTATENGYGKRTSILEYTRHGRGTKGMI 788 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ N G +VA V ND+I+L++D+G L+R V EIR RAT+GV + + + Sbjct: 789 AIQQTERN--GKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDEG 846 Query: 889 ERVVSVERIRESEIVD 904 ++ ++RI E++ + Sbjct: 847 AKLSGLQRIVENDANE 862 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 14/241 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ L + R+ G + + DF+ + V+ F Sbjct: 655 FPADHYIFMCTARGTVKKTALDDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + QARG + ++L++G+ + ++ + V+ AT Sbjct: 713 SDGGKAVRFDEEDVRPLGRQARG---VRGMALDEGQSVIAMLVAED-----ETQSVLTAT 764 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ ++I+L T G VR Sbjct: 765 ENGYGKRTSILEYTRHGRGTKGMIAIQQTERNGKVVAATLVRPNDEIMLITDRGVLVRTR 824 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ IR GR + GV I+L +G ++ + ++ DA+ + + G+ Sbjct: 825 VAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANESIADPGVDANPEADAGVPGEE 883 Query: 770 E 770 Sbjct: 884 S 884 >gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163] gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617] Length = 878 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 ITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V + ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ + R G V +RD+D + + + S + FS+ G V + Sbjct: 650 TASGTVKKTALTDFSRPRSAG--IIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+R+ +++ ++ ++ T++G +R Sbjct: 708 ESAVRTMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 VEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV I A+ + V+ + V A+ + + + + + D Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSAAEGDDEIAPEVDTDDQAPEADD 877 Query: 780 S 780 Sbjct: 878 E 878 >gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] Length = 867 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 392/919 (42%), Positives = 562/919 (61%), Gaps = 77/919 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NPD +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLSNPDATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + +Y + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL +VK E RR+RI ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLVAGSEE-------------------------- 751 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 Q +LT +E GFGKRT ++ R KG+ A Sbjct: 752 --------------------------QSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERIRESEIVDEAESTE 910 +++I E+E D E+ E Sbjct: 844 SGLQQIAEAEEGD-GEADE 861 >gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] Length = 923 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + +E+ REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EV Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VV Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646 + + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662 Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 Y+ AT G V++ L F + SG IA+KL+ Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V+E+ ++ R T+GV + A DE +V +ER++E D+ + E Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 98/247 (39%), Gaps = 15/247 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + I V+ FSS G Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + I ARG + + L +G+++ +++ + ++ A++ G Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + + + ++ + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 +GRN+ GV I LA + ++ + V DE + + + + E + Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESESEPAA 916 Query: 775 LKNDSSV 781 + Sbjct: 917 EAEGNEE 923 >gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110] gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110] Length = 881 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 387/916 (42%), Positives = 557/916 (60%), Gaps = 77/916 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP +D LMEI+ PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVRDGYRTGRGKVVMRAK 245 Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIEVFLQHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425 Query: 433 LIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + +GSDG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RSRADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532 + EI + LDIL+ R+ II +EL ++K E RR+ + D+ ED Sbjct: 486 YKEVMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVEHSAYDLSTEDL 545 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PL+ YRAQ+RGG+G+ V +++D++ LFI +TH +L F Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILCF 605 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+I + E + + YV A Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMA 665 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 666 TSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDEE 725 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GVRG+SL G VI+M + Sbjct: 726 DVRPL-GRNARGVRGMSLDPGQGVIAMLVAED---------------------------- 756 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 ------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ +D+I+L++DKG L+R V EIR RAT+GV + + ++ Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850 Query: 892 VSVERIRESEIVDEAE 907 ++RI E++ E+E Sbjct: 851 SGLQRIVENDANGESE 866 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 14/236 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+GG + + D++ + V+ F Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKGGIIAVNLD--EGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + +SL+ G+ + ++ + V+ AT Sbjct: 714 SDGGKAVRFDEEDVRPLGRNARG---VRGMSLDPGQGVIAMLVAED-----EQQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++ IR GR + GV I L +G ++ + ++ DA+ + S+ Sbjct: 826 VAEIREL-GRATQGVTLIGLDEGAKLSGLQRIVENDANGESEPGADDTSSSSTENP 880 >gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 402/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL S V+ FS+ G Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ +R+ + + + ++ + I++ T G VR +S I Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V D + + + Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 896 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 419/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E +SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R + ++ +R+ K + + + ++++ + + I+L T G Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A + V+S+ V D + + S + Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVESTETST 894 Query: 765 IS 766 + Sbjct: 895 EA 896 >gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7] gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7] Length = 921 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 409/950 (43%), Positives = 571/950 (60%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + +E+ REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EV Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VV Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646 + + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662 Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 Y+ AT G V++ L F + SG IA+KL+ Sbjct: 663 GEVVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V+E+ ++SR T+GV + A DE +V +ER++E D+ E E Sbjct: 847 TLVRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPE 896 Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 97/245 (39%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + I V+ FSS G Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + I ARG + + L +G+++ +++ + ++ A++ G Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + + + ++ + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + V DE + + + + + Sbjct: 857 SLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPEGEEGAEALGESAESEPAAEA 916 Query: 775 LKNDS 779 N+ Sbjct: 917 EGNEE 921 >gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430] gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430] gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158] Length = 878 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 ITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ +G YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + A Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ + R G V +RD+D + + + + + FS+ G V + Sbjct: 650 TASGTVKKTALTDFSRPRSAG--IIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L +G+R+ +++ ++ ++ T++G +R Sbjct: 708 ESAVRTMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 VEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV I A+ + V+ + V A+ + + + S + D Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSAAEGDDDIAPEVDTDDESPEADD 877 Query: 780 S 780 Sbjct: 878 E 878 >gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CMR15] Length = 885 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 381/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V Sbjct: 182 IPPHNLREVVDGCLHLLHNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + + I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM R+W++ ++ Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + + +V +T Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMSTS 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + + Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRG++L +G QVI+M + A E+ Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LT +E G+GKRT ++ R KG+ A S Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ Sbjct: 795 ERN--GKVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852 Query: 894 VERIRESEIVDEAEST 909 ++R+ ES+ E + Sbjct: 853 LQRVVESDAEGEDAAD 868 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 647 FDEQHFVFMSTSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAAEDEIMLITTGGVL 821 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGAESDGEAPNA 880 Query: 766 SGDT 769 Sbjct: 881 DTAE 884 >gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3] gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3] Length = 871 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 391/919 (42%), Positives = 563/919 (61%), Gaps = 76/919 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP++L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPQASIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + ++V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRATTHFEEIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLECFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+D+ + +I+ +P P AR+ELM RSW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLARAEAENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR+RI ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMG 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V +I+L++ G LIR V+EIR RAT+GV + S + R+ Sbjct: 786 TSERN--GKVVAATLVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTRL 843 Query: 892 VSVERIRESEIVDEAESTE 910 +++I E++ E ++ + Sbjct: 844 SGLQQIAEADADSEIDADD 862 >gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS] gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS] Length = 881 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 387/918 (42%), Positives = 554/918 (60%), Gaps = 77/918 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP +D LMEI+ PDFPT +I G G+K+ Y TGRG +V+R Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAK 245 Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLQHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425 Query: 433 LIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + +GSDG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RSRADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532 + EI + LDIL+ R+ II EL ++K E RR+ + D+ ED Sbjct: 486 YKDVMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVEHSAFDLSTEDL 545 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PL YRAQ+RGG+G+ +++D++ LFI +TH +L F Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+I + E + + YV + Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMS 665 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 666 TSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFAED 725 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GVRG+SL G VI+M + Sbjct: 726 DVRPL-GRNARGVRGMSLDPGQGVIAMLVAED---------------------------- 756 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 ------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ +D+I+L++DKG L+R V EIR RAT+GV + + ++ Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850 Query: 892 VSVERIRESEIVDEAEST 909 ++RI E++ E+E Sbjct: 851 SGLQRIVENDANGESEPD 868 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 99/236 (41%), Gaps = 14/236 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+GG + D D++ + V+ F Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFNNPRKGGIIAVNLD--DGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + +SL+ G+ + ++ + V+ AT Sbjct: 714 SDGGKAVRFAEDDVRPLGRNARG---VRGMSLDPGQGVIAMLVAED-----EQQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 ++ IR GR + GV I L +G ++ + ++ DA+ + S+ Sbjct: 826 VAEIREL-GRATQGVTLIGLDEGAKLSGLQRIVENDANGESEPDADDTSSSSTENP 880 >gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] Length = 866 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 407/903 (45%), Positives = 567/903 (62%), Gaps = 69/903 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D+P+I LD +M+II GPDFPT A+I GR GI Y TG+G +IR Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAIINGRAGIIQGYRTGKGRAIIRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TE+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADVILN LY T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A++ L+ + W +K +++ Sbjct: 366 TLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + LSE Q +AILELRL RLT L +D I +E L I Sbjct: 426 RAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E L+IL+S RL+ +I+ E + +K + RRT I+E D+ ED I E++VVT+SH Sbjct: 486 RELLEILASPERLMQVIRDEFVEIKTQFGDERRTEIIESQEDLTIEDLITEENVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P+S Y+AQRRGGKG+S ++DEDFV+ L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+ S +RG+ +INIL L +GE I ++P E + YV ATK G V++ L+ Sbjct: 606 ELPLASRISRGRPIINILPLAEGEEINAMLPVREYL---DGYYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ LD D ++ V+ DI+L T G+ VRF + +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + + VIS+ + Sbjct: 722 RGIRIEEEQAVISLVVAHP----------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ILT +E G+GKRTS ++R+S R G+G+ + V++ N G +V Sbjct: 741 ------------DGTILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNERN--GKVVRS 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D+ +L++DKGTL+R VNE+ + R T+GV + + + E+VV +++I E D Sbjct: 787 VQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGMQKI-EDLGED 845 Query: 905 EAE 907 + Sbjct: 846 SND 848 >gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4] gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4] Length = 908 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 409/925 (44%), Positives = 560/925 (60%), Gaps = 88/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R Sbjct: 186 NINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ W +K +++ Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + D YL+E Q +AILELRL RLTGL D I E L I Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL V RRT I +DM ED I ED+VVT+SHL Sbjct: 485 ALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L +GERIT I+P E + Y++ AT HG V++ L+ + Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYA---EDKYIIMATSHGTVKKTALTAY 661 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ NDI+L + G+ VRF A Sbjct: 662 SNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721 Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R GR + GVRGI L G V+S+ + Sbjct: 722 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 755 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 E ILTV+E G+GKRT ++ +R K Sbjct: 756 ----------------------------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTK 787 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I T Sbjct: 788 GVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRT 845 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 A+DE+VV ++RI E ++ + E Sbjct: 846 AEDEKVVGLQRIDEIQVPEVELDEE 870 Score = 62.9 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 100/272 (36%), Gaps = 18/272 (6%) Query: 536 EDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 ED + + + G VK+ L+ Y R G V ++D D + + I + ++ FS+ Sbjct: 640 EDKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGNNDIMLFSN 697 Query: 595 LGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSW 643 G V + G + + +++L R T + Sbjct: 698 EGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPK 757 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700 ++ T++G +R L+++ +R K + + + + + ++I+L + Sbjct: 758 GEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLIS 817 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR P + + GRN+ GV I A+ ++V+ + + E + Sbjct: 818 NKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIV 876 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + + E + ++ + + ++ Sbjct: 877 EGAAETEGQTEAANTDASNTEGESTETPKTED 908 >gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 896 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 417/908 (45%), Positives = 569/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M++ DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +S++ + E +SSV Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R + ++ +R+ K + + + ++++ + + I+L T G Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A + V+S+ V D + + + + Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVENTETST 894 Query: 765 IS 766 + Sbjct: 895 EA 896 >gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661] gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661] Length = 887 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 574/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 187 LTEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E Sbjct: 247 EVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+ANLD ++ +IR + NP A+ L+ R W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATACGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D+V+S+ + A Sbjct: 723 GIKLAENDRVVSLIVPQEEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 744 --------------IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D+DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847 Query: 906 AESTE 910 + + Sbjct: 848 LDGID 852 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 94/250 (37%), Gaps = 15/250 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ + R G V +RDED + + + + + FS+ G V + Sbjct: 650 TACGTVKKTALTEFSRPRSAG--IIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFA 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A + + + L + +R+ +++ ++ T++G +R Sbjct: 708 ETAVRAMGRTA---SGVRGIKLAENDRVVSLI------VPQEEGAIMTVTQNGYGKRTNT 758 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ + + + + + + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSEV-SVVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV I A+ + V+ + V A+ + + + + ++ Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDGIDGTVAEGDEDIAPEVEVDDAADVDNE 877 Query: 780 SVEGNISEER 789 E+ Sbjct: 878 DEAPEGDEDE 887 >gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ] gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ] Length = 848 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 400/904 (44%), Positives = 567/904 (62%), Gaps = 62/904 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E+ +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Sbjct: 2 QEQVTQKVAVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD PAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+++ H LL DL K+TV F PNYD S EP VL A++PN+LVNG GIAVGMATN Sbjct: 122 YTEIRMKQLTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D +A+I NP + + L+E++ GPDFPTG I GR GI + YATGRG I Sbjct: 182 IPPHNLGEIIDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQ 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR +H+E DRE IVVTEIPYQVNKA ++ IAELV+EK+I I+DLRDESDR G Sbjct: 242 IRAKAHVENSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+LK+ +A+V+LNQLY++T +Q+ F +NM+A+ +P+ +L ++ F+ R E+ Sbjct: 302 RIVIDLKKDENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREM 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V +RT + L KA RAH+L GL IA+ LD V+ +IR S P A+ LM+ + D Sbjct: 362 VTKRTLFELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYL 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 ++L + Y LSE+Q +AILE+RL RLTGL RD I E + I Sbjct: 422 QRLNLPRPAGYEKAVQ----LSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLK 477 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL S + ++ II EL +K+ RRT IV D+ ED I +MVVTVSH GY+ Sbjct: 478 EILGSDAEIMKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYI 537 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + +YRAQRRGGKG++G+ R+EDFV LFI ST +LFFS +G VY+ KV+ +P Sbjct: 538 KRSAVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPE 597 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS +GKA++N++++ +GE+IT I+P + +LY++ AT++G V++ L +++ I Sbjct: 598 GSRTTKGKAVVNLVNVQEGEKITAILPVKDLN--REDLYLLMATRNGVVKKTPLVEYLNI 655 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ LD D+++SV + D+ L ++ G+ +RFP S R GR + GVRG++ Sbjct: 656 RTTGINAVNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPM-GRVTRGVRGMN 714 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+VI M +V Sbjct: 715 LEARDEVIGMEVVDPT-------------------------------------------- 730 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 I T++E GFGKRT ++R +R GKG+ + N G +V V VN Sbjct: 731 ------ATGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN--GLVVGVMQVN 782 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906 D +Q+++++D+G ++RVPV + R T+GV + T + E++V+V ++ E + D E Sbjct: 783 DENQLMVITDQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAERDDEDGIEP 842 Query: 907 ESTE 910 E E Sbjct: 843 EGEE 846 >gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington] gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington] Length = 905 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 453/899 (50%), Positives = 636/899 (70%), Gaps = 9/899 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y Sbjct: 6 SSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYD+L RM QD+SLRL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH L++D+ K TV F NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP Sbjct: 126 SRMSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG Sbjct: 186 HNLGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ I Sbjct: 246 KAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ R Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLLNKARDRAH+L+GLAIA++N+DE++ II+ S + A++ELM R W DI LI Sbjct: 366 TIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLIK 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+DD + G + +EVQ +AILE++L RLT + ++ + +L L EI E L+IL Sbjct: 426 LVDD-KVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILD 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+RLL I+K+EL+ VK+E PR T I G D + ED I RE+MVVTV+ GY+KRVP Sbjct: 485 SRTRLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR+Q+RGGKGRSG+ MRDED +F+ STHT +LFFS++G VY K+++LP+ +PQ Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ ++NIL L + E IT IMP PE++ W++L ++FAT GN+RR+ L DF +I +G Sbjct: 605 GKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQLNG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++R+ R S GVRG+ LAK Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKE 724 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM ++ ++ ++R Y+ +R I+ E N ++ +++ + E Sbjct: 725 DSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEE-----FNLEALGVHLNADSILE 779 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+ Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910 ++L+++ G LIR + +RI R T GV++F DE+VVSV I E SE +++E E Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSESGEDSELVE 896 >gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 884 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 392/927 (42%), Positives = 556/927 (59%), Gaps = 82/927 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ V+ +PD +D +MEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ Y +G DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDILS R+ II EL ++K E RRT + D+ Sbjct: 482 IVAEYKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D ++ + + Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG+ L G VI+M + Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ D+I+L++DKG L+R V EIR RAT+GV + + + Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846 Query: 888 DERVVSVERIRESE-----IVDEAEST 909 ++ ++RI E++ D+A S+ Sbjct: 847 GAKLSGLQRIVENDANPPAADDDAPSS 873 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 14/241 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + V + +G VK+ L + R+GG + D D++ + V+ Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 712 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS G + + ARG + + + + M ED V+ A Sbjct: 713 FSDGGKAVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTA 764 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R + ++ + R G IA++ ++++ E++I+L T G VR Sbjct: 765 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRT 824 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ IR GR + GV I+L +G ++ + ++ DA+ + S Sbjct: 825 RVAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANPPAADDDAPSSTTPDADGSAT 883 Query: 769 T 769 Sbjct: 884 E 884 >gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 877 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 402/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ I Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E +E Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +IR RR + + Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y L++ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ E + Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L+ + R G + DE DL S V+ FS Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + K + A G I ++ ++ T+ Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ + V+ + V D + + Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSAAEGDDDIAPEADT 868 Query: 771 EITSLKNDS 779 + +++ Sbjct: 869 DDDIAEDEE 877 >gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666] gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666] Length = 880 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 397/923 (43%), Positives = 565/923 (61%), Gaps = 77/923 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+ R PN+LVNG GGIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LMEI+ PDFPTG +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHMLKNPEASIDELMEIVPAPDFPTGGIIYGINGVKDGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F++ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIQVFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R W++S ++ Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ ++ +GSDG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + EI + LDIL+ R+ II +EL ++K E RR++I D+ Sbjct: 482 IVAEYKEVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQTKLGARRSQIEHSSFDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+IT ++P E S + Y Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPADQY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG++L G VI+M + Sbjct: 722 FDENDVRPM-GRNARGVRGMTLEDGQGVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 ++Q +LT ++ G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------EQQSVLTATQNGYGKRTSITEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + Sbjct: 789 IAIQQSERN--GKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIGLDE 846 Query: 888 DERVVSVERIRESEIVDEAESTE 910 ++ ++RI E++ + E Sbjct: 847 GSQLSGLQRIVENDATLDDNDVE 869 >gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1] gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae] gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1] Length = 869 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 391/906 (43%), Positives = 559/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 >gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 896 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 417/908 (45%), Positives = 569/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M++ DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +S++ + E +SSV Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R + ++ +R+ K + + + ++++ + + I+L T G Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I A + V+S+ V D + + + + Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVENTETST 894 Query: 765 IS 766 + Sbjct: 895 EA 896 >gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] Length = 853 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 372/894 (41%), Positives = 529/894 (59%), Gaps = 62/894 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I +EM++SY+ Y+++VI+GRA+PD+RDGLKPVHRR+L+GM ++G+ + Sbjct: 2 EAEKPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASA 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD+++R L++GQGNFGS+DGD PAA R Sbjct: 62 PYKKSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ KDTVDF+ N+DGS +EPVVL A PN++VNG GIAVGMAT Sbjct: 122 YTEARLTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATK 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE VD VA+IDNPDI LD L++ + PDFPTG +I G +G+K AYATGRG I+ Sbjct: 182 IPPHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRIL 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR H E+ R +V+TEIPYQVNK++++EKIA LVRE+RI I D+RDESDR+G R Sbjct: 242 IRARIHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+EL++ A VI NQLY+YT Q F VNMVAL +P TL +++ ++ R EVV Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA +RAH+L GL IA+ +LD V+ IIR+S +P+ AR+ LM+ + Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + + L+E Q AIL LRL+RLTGL R + E +L EI+ Sbjct: 422 QRERLGLP---VEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRS 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S II++ELL +K + RRT I G D ED I E +VVT+SH G + Sbjct: 479 ILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLI 538 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P+ +YR Q RGG G MR++D++ LF H +LFF+ G Y +V+ +P Sbjct: 539 KRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPE 598 Query: 609 GSPQARGKALINILSLNQGERITTIMPF----PEDESSWNNLYVVFATKHGNVRRNKLSD 664 GS + G+++ N++ + +R+ ++ E+ YV+ AT+ G V++ +L Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G IA+ DE++ +LL + G+ VRF S +R GRN+ GV Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPM-GRNTRGV 717 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L G+QV+ M V Sbjct: 718 RGIALETGEQVVGMVAVSP----------------------------------------- 736 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 IL++S G+GKRT ++ + R GKG+ ++ G L+A+ Sbjct: 737 ----------EASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR--TGRLIAI 784 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V D D +++++ G +IR+ V +I R T+GV + + + V R+ Sbjct: 785 KAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVTRLV 838 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 A++ + R + ++ + + ++L EQ Sbjct: 468 ALLQEIERLRSILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQ 527 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++T+S +G KRT + +R R G G++A+ + + + I L A ++D ++ +D Sbjct: 528 VVVTLSHQGLIKRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACK---NHDYLLFFTD 584 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903 G + V +I SR + G I + A D+RV +V IR+ + Sbjct: 585 HGRCYWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFE 632 >gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] Length = 889 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 388/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 24 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA R Sbjct: 84 AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 143 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATN Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 203 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 204 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 383 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S ++ Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 443 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 444 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 503 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 504 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 563 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 623 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + +V A Sbjct: 624 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 680 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 681 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 740 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L +G QVI++ + Sbjct: 741 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 768 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E GFGKRT ++ R KG+ A Sbjct: 769 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 807 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 808 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865 Query: 892 VSVERIRESEIVDEAESTE 910 +++I E+E D E+ E Sbjct: 866 SGLQQIAEAEDGD-GEADE 883 >gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 900 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTV+FRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S+ + I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR QRRGGKG+ G +++ED +T+LF+ +THTS+LFFS++G VY+ KV++LP+ P Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG+AL+NI L+ E IT IMP P + N +VFAT +GN+RRN L+DF I +G Sbjct: 602 ARGRALVNIFPLSDSETITNIMPLPSEN--DENQNIVFATAYGNIRRNSLADFHYIPSNG 659 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI L K Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM I+ + + Y+K A+R L + I S + + I E + Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L + E+FILT++E GFGKRTS+Y++R++NR G GI + N G +VA FPV D Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VNEIRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 >gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] Length = 912 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 471/919 (51%), Positives = 620/919 (67%), Gaps = 18/919 (1%) Query: 1 MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ D ++E SVSI EM+ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MSDTPQPPDSDDEMRPERPVYDGPSVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRILF M + G +K Y K AR G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRILFAMHETGNTHDKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD PAA RYTE R+ K A +LL D+ KDTV+++ NYDG +EP VL AR+PN Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D +A+I+ PD+ + L++ + GPDFPTG ++LG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 RTG + AY GRGS++IR + +E+ DR IVV EIPYQVNKA M+EKIAE VREK+I Sbjct: 241 RTGARKAYLEGRGSVIIRAKTRVEEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 I+ ++DESDR G RVV+ELKR A+A+V++NQLYR+T LQ+ F NM+ALNG +PE+ T Sbjct: 301 EGISHVQDESDRNGVRVVVELKRDATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L F+ FREEVV RRT YLL KAR+R+HVL GLA+AV N+DEVV IR S + A Sbjct: 361 LRKFLTYFIDFREEVVARRTAYLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A DI I LIDD ++T DGT LSE Q RAIL+LRL RLT +G ++ Sbjct: 421 RSKLMTRRWPAQDILPYIALIDDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +IKE LDIL SR R++ II EL V++ PRRT IV+ DMEDED I Sbjct: 481 TDELEELAGKIKEYLDILGSRDRIMSIISDELREVRELFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 REDMVVTV+ GY+KR PL+ +R+QRRGGKG SG ++++D VT LF+ +THT +LFF+ Sbjct: 541 AREDMVVTVTQGGYIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G YK K WRLP G ++GKA+INIL + QG I I+P DE W+ L +VFAT Sbjct: 601 TDGMAYKLKTWRLPQGGRTSKGKAIINILPIPQGVSIAAILPIDRDEKDWSELQIVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRN LSDF + +GKIAMK + +++ + ++D++L T G+ +RFP Sbjct: 661 AGTVRRNALSDFTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPS 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R+SVGVRG+ L D+V+SM+++ H +A DER+ Y+K A L Sbjct: 721 TDVRVFNSRSSVGVRGVRLTGDDKVVSMSVIRHFNATSDERVAYLKMRRAMAGLA----- 775 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + G E ++ E ILT++ +G GK +SS+D+ + R G G++A Sbjct: 776 -DDAEIEEEETTGESVEIDYAKMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAM 834 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K G +VA FPV +DQI+L + KG IRVPV I SR+ GV +F+T K E Sbjct: 835 D--KAMRGGPIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEE 892 Query: 891 VVSVERIRESEIVDEAEST 909 VVSV I + + + Sbjct: 893 VVSVAWIADQGEEETGDDE 911 >gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15] Length = 873 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 567/910 (62%), Gaps = 71/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRIYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G R Sbjct: 243 RARHEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+RG + DV++N L+ T L+++F +NMV L +P+ L +L AFV R EVV Sbjct: 303 VVIELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGEPKTLNLKQLLDAFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+ A+ +L+ + W+ D+ Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 423 MLERAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL RLL +I++EL ++ E RRT I D+ D I ED+VVT Sbjct: 483 DKIADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P S +RG+ ++NIL L++GERITT +P + + +V+ AT G V++ Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + SG IA+ LD D ++ + +++L + G+ VRF A+R + R + Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMS-RTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI + +G V+S+ I Sbjct: 719 RGVRGIKMPQGHHVVSLIIPQDGGV----------------------------------- 743 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ILT SE G+GKRT+ +F +R +G+ A S+ N G L Sbjct: 744 ------------------ILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERN--GNL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900 V + D D+++L+SDKGTL+R +E+ + SR T+GV + + +DER+V VERI E+ Sbjct: 784 VTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843 Query: 901 EIVDEAESTE 910 + DE +E Sbjct: 844 D--DEELDSE 851 >gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 934 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 402/949 (42%), Positives = 574/949 (60%), Gaps = 116/949 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+V+GC+A+I+N ++ +D LM I GPDFPTGA+I GR GI AY TGRGS+ +R + Sbjct: 187 LTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V E+PYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG S +++LN LY++T LQ+ F +NMVAL+ +P+ L IL AF+ R EVV RRT Sbjct: 307 IKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ +L+ R W ++ +++ Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLEK 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G +L+E Q +AIL+LRL +LTGL I E SL I Sbjct: 427 AGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+SH Sbjct: 487 ELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV++ Sbjct: 547 GYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L +GERIT I+P E ++ YV FAT G V++ LS F Sbjct: 607 LPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLSAF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + SG A+ L DE++ V+ N+I+L + G+ VRF + Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVSDD 723 Query: 713 -----------------------------------IRVFAGRNSVGVRGISLAKGDQVIS 737 +R GR + GVRGI L GD+V+S Sbjct: 724 VDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPM-GRTAGGVRGIRLLNGDKVVS 782 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 + + A Sbjct: 783 LIVPRGEGA--------------------------------------------------- 791 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT +E G+GKRT+ ++ +R +G+R+ V + N G ++ V+D DQI+L++ Sbjct: 792 --ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERN--GKVIDAIQVDDTDQIMLIT 847 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + GTL+R V+E+ I R T GV + T +DE VV ++RI ES+ + Sbjct: 848 NGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEEND 896 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 4/144 (2%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704 ++ AT++G +R L+++ +R G ++K+D +++ + I+L T G Sbjct: 792 ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGT 851 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR +S + GRN+ GVR I + + V+ + + +D + ++ + +S Sbjct: 852 LVRTRVSEV-SIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEENDVMAIDGEVSEGTDT 910 Query: 765 ISGDTEEITSLKNDSSVEGNISEE 788 S+ EG S+E Sbjct: 911 APDAGSAAAGSFEGSTEEGAASDE 934 >gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755] gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755] Length = 888 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 415/902 (46%), Positives = 570/902 (63%), Gaps = 35/902 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +K Sbjct: 3 ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++GC+A I+N I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + + Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E TS REQIVVTE+PYQVNK ++EKIAELVR+KRI I+ + D SD++G + Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+K A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R W+ ++ + Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E L + Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLV 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L IL+S RL+ +I++EL +K E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF +A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + + +T E + SSV Sbjct: 722 TGVRGIKL-----------------------ATTEISVDDAEEVDIETVENEEAEEASSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G + Sbjct: 759 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA+DE VVS+ERI E E Sbjct: 817 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876 Query: 902 IV 903 Sbjct: 877 DD 878 Score = 83.7 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 19/236 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + S D L + QE+ ++ + G P+S R G + + D + Sbjct: 520 ITAASGDINLE-DLIAQEDVVVTLSHAGYVKYQPLSDYEA-QRRGGKGKSATKMKEDDFI 577 Query: 736 ISMAIVLHADA-------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + + D ++ + A R I L + Sbjct: 578 EKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILP 637 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++FI + G K+ S F SN G+ A + + L+ V N Sbjct: 638 VPNGEFSADKFIFMATASGTVKKVSLDAF--SNVRSSGLIALKLREG---DELIGVDITN 692 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +I+L S +G ++R +R R GV A E +SV ++E VD Sbjct: 693 GESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTE--ISV---DDAEEVD 743 Score = 61.0 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R L ++ +R+ K + + + ++++ + + I+L T G Sbjct: 777 ILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGT 836 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 VR ++ + GRN+ GVR I A+ + V+S+ + + D E + + Sbjct: 837 LVRTRVNEV-SLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA 888 Score = 39.8 bits (91), Expect = 2.2, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740 D+++S+ + +IL T+ G R + R + GV I + + +V++ Sbjct: 763 DKVVSLVIPHTQGEILTVTQNGYGKRTALGEY-PVKSRATKGVVSIKVNERNGKVVAAVQ 821 Query: 741 VLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 V D + + G + + + E +S ER E++ Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881 Query: 800 ILTVSE 805 L+V E Sbjct: 882 NLSVEE 887 >gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50] gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822] Length = 893 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 389/911 (42%), Positives = 549/911 (60%), Gaps = 78/911 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG ++ Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421 Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ +D Y + DG LSE Q + IL +RL RLTGL +D I Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II +EL ++K E RR I +++ Sbjct: 482 IGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH + Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L GE++T ++P E + YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG+ L +G VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMMLEEGQTVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRT ++ R KG+ A Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V V +D+I+L++ G L+R V EIR RAT+GV + S Sbjct: 786 IQTSSRN--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGS 843 Query: 890 RVVSVERIRES 900 + V R+ ES Sbjct: 844 SLSGVRRVVES 854 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D++I MA + +S + + I + Sbjct: 468 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDT 527 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +E N +E ++L ++T+S G+ K ++R R G+G +AT + + + Sbjct: 528 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893 + L F N +D ++ S++G + + V E+ +R ++G I + A E+V Sbjct: 588 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 644 Query: 894 VERIRESEIV 903 V ++E Sbjct: 645 VLPVKEFSED 654 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 135/410 (32%), Gaps = 27/410 (6%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + ++I+ +D D + L Sbjct: 495 LLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 554 Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 S + Q + + G ++ + I D L S + + Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 614 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556 + V R IV + E + V + G VK+ PLS + Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+ G + D D++ + V+ FS G + + ARG Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 731 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + + L +G+ + ++ + V+ AT++G +R ++++ + R K + Sbjct: 732 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 784 Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + ++ ++I+L T G VR ++ IR GR + GV IS+ G Sbjct: 785 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 843 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + + V+ +DAD D+ DT + Sbjct: 844 SLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSEPTEPTE 893 >gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42] gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42] Length = 888 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 383/914 (41%), Positives = 551/914 (60%), Gaps = 77/914 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 13 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 72 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 73 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 132 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATN Sbjct: 133 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 192 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ PD +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 193 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 252 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G Sbjct: 253 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 313 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIEVFLQHRREV 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ ++ Sbjct: 373 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 432 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + G LS+ Q + IL++RL RLTGL +D Sbjct: 433 EMLTRTRADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDK 492 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ +R+ II +EL +++ E RR+ I D+ Sbjct: 493 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 552 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 553 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 612 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P + + Y Sbjct: 613 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 672 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 673 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 732 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG+ L G VI+M + Sbjct: 733 FDENDVRPL-GRQARGVRGMMLEDGQSVIAMLVAED------------------------ 767 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 768 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 799 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + Sbjct: 800 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 857 Query: 888 DERVVSVERIRESE 901 ++ ++RI E++ Sbjct: 858 GAKLSGLQRIVEND 871 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + V + +G VK+ L + R+GG + D D++ + V+ Sbjct: 666 TFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 723 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS G + + QARG + + + + M ED N V+ A Sbjct: 724 FSDGGKAVRFDENDVRPLGRQARGVRGM----MLEDGQSVIAMLVAED----ENQSVLTA 775 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R + ++ + R G IA++ ++++ +++I+L T G VR Sbjct: 776 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRT 835 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 +S IR GR + GV ISL +G ++ + ++ DA+ + Sbjct: 836 RVSEIREL-GRATQGVTLISLDEGAKLSGLQRIVENDANATD 876 >gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 896 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 419/908 (46%), Positives = 569/908 (62%), Gaps = 36/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + D YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M++ DF+ L I +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA D +S++ + E +SSV Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875 Query: 902 IVDEAEST 909 DE Sbjct: 876 DEDENSEA 883 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+V L + R G + +R+ D + + I + ++ F Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635 S+ G V + + A G I + + + Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760 Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689 ++ T++G +R + ++ +R+ K + + + ++++ Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + + I+L T G VR ++ + GRN+ GVR I A + V+S+ V D + + Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879 Query: 750 ERICYMKHMSAQRRLIS 766 S + + Sbjct: 880 NSEALDNVESTETSTEA 896 >gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 902 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 62/910 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLRKIAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV C+ V+ NP+ +D L+EII PDFPT +I G ++ Y TGRG +V Sbjct: 182 IPPHNLDEVVTACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQRVREGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E R+ I+V E+PYQVNK +LE+IAELV EK++ I+DLRDESD+ G Sbjct: 242 MRAKTHFEDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR H L GLA+A+AN+DE + II+ + NP A++ELM ++W++S ++ Sbjct: 362 VTRRTIFELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVR 421 Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + Y + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528 NE + EI + LD+L+ R+ +I+ EL V+ E DT RR+ I ++ Sbjct: 482 VNEYKEVMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELF 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +D+VVT+S+ GY+K PLS YRAQ+RGG+G+ ++ED++ LF+ +TH + Sbjct: 542 TEDLITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDT 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L FS G +Y KVW +P GS +RGK ++N+ L +GE+IT I+P +N YV Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGY---QDNQYV 658 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ +LSDF ++G IA+ L+ D ++ ++D++L + G+ VRF Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI+M + A+ E + A Sbjct: 719 DENDVRPM-GRTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIAIPSS---- 773 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 +LT +E G+GKRT ++ R KG+ Sbjct: 774 -------------------------------VLTATENGYGKRTPITEYTRHGRGTKGMI 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V+ DQI+L++ G L+R V+EIR RAT+GV + + + Sbjct: 803 AIQTSERN--GKVVAAALVSPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860 Query: 889 ERVVSVERIR 898 R+ ++RI Sbjct: 861 TRLSGLQRIA 870 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 15/254 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + LG VK+ LS + R+ G V + + DF+ I V+ F Sbjct: 652 YQDNQYVFMATSLGTVKKTRLSDFSNPRKAG--IIAVDLNENDFLVGAAITDGQHDVMLF 709 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN---------ILSLNQGERITTIMPFPEDESSW 643 S G + + ARG +N +L + Sbjct: 710 SDAGKAVRFDENDVRPMGRTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIA 769 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700 V+ AT++G +R ++++ + R G IA++ ++++ + E+ I+L T Sbjct: 770 IPSSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAALVSPEDQIMLIT 829 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR +S IR GR + GV I++ +G ++ + + +D+D D +SA Sbjct: 830 TGGVLVRTRVSEIREM-GRATQGVTLINVDEGTRLSGLQRIAESDSDEDTDDAEGGDISA 888 Query: 761 QRRLISGDTEEITS 774 S D + Sbjct: 889 DPATDSNDDTAGDA 902 >gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] Length = 903 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 479/895 (53%), Positives = 631/895 (70%), Gaps = 8/895 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S+SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G NK Y KC Sbjct: 12 SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG+YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL+K Sbjct: 72 VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +A LL D+ KDTVDF PNY EP VL ARYPN+LVNG GIAVGMAT IP HNLGE Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+IDNPD+ + L++ I PDFPTG +ILGR+G + AY GRGS+VIR + E Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLILGRSGARKAYTEGRGSVVIRCKTRTE 251 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNKA M+E+IAE REKRI IA ++DESDR G RVVIELKR Sbjct: 252 EIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQL+R+T +Q F+ NM+ALNG KPE TL G L AF+ FRE+VV +RT + L Sbjct: 312 ATPEVVLNQLFRFTPMQVSFACNMLALNGGKPETLTLRGFLTAFLDFREDVVAKRTAFEL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NKAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM+R W A +I I LIDD Sbjct: 372 NKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLIDDP 431 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ + DGT LS+ Q RAIL+LRL RLT LG ++ +EL +L +I+E LDIL SR R+ Sbjct: 432 THKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRERI 491 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L I+ EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR L+ +R Sbjct: 492 LSIVSDELREVRERHAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTQGGYIKRTALADFR 551 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +Q+RGGKG SG +++ED VT LF+ +THT +LFF++ G VYK K WRLP+G +RGKA Sbjct: 552 SQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSRGKA 611 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 612 IVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTNVMRNGKIAMK 671 Query: 678 LDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L +++ C++++D++L T G+ +RFP++ +RVF+GR+S GVRGI L GD+V Sbjct: 672 LPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVRGIRLQNGDKV 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SMA++ H +A +ER+ Y+K RR G T+E S D G + +R E+ Sbjct: 732 VSMAVIRHFEASPEERVAYLK----MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSA 787 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E +LT++ KG GK +SS+ + + R G+G+ A K G +V+VFPV +DQI+L Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSA--TDKAMRGGPIVSVFPVELDDQIML 845 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 V+++G IRVPV+ I SR+ GV +F+TAK E VVSV I E DE + Sbjct: 846 VTNQGQSIRVPVDGISFRSRSAGGVRVFNTAKGEEVVSVAWIAEQADEDEPGEGD 900 >gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] Length = 893 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 389/911 (42%), Positives = 549/911 (60%), Gaps = 78/911 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG ++ Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421 Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ +D Y + DG LSE Q + IL +RL RLTGL +D I Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II +EL ++K E RR I +++ Sbjct: 482 IGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH + Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L GE++T ++P E + YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG+ L +G VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMMLEEGQTVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRT ++ R KG+ A Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V V +D+I+L++ G L+R V EIR RAT+GV + S Sbjct: 786 IQTSSRN--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGS 843 Query: 890 RVVSVERIRES 900 + V R+ ES Sbjct: 844 SLSGVRRVVES 854 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D++I MA + +S + + I + Sbjct: 468 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDT 527 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +E N +E ++L ++T+S G+ K ++R R G+G +AT + + + Sbjct: 528 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893 + L F N +D ++ S++G + + V E+ +R ++G I + A E+V Sbjct: 588 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 644 Query: 894 VERIRESEIV 903 V ++E Sbjct: 645 VLPVKEFSED 654 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 27/410 (6%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A D + II A + ++I+ +D D + L Sbjct: 495 LLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 554 Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 S + Q + + G ++ + I D L S + + Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 614 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556 + V R IV + E + V + G VK+ PLS + Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+ G + D D++ + V+ FS G + + ARG Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 731 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + + L +G+ + ++ + V+ AT++G +R ++++ + R K + Sbjct: 732 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 784 Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + ++ ++I+L T G VR ++ IR GR + GV IS+ G Sbjct: 785 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 843 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + + V+ +DAD D+ + DT + Sbjct: 844 SLSGVRRVVESDADADDEDGGEEGGEEGGDQGGDDTGAQGKDSEPTEPTE 893 >gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. B100] gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris] Length = 899 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 397/908 (43%), Positives = 566/908 (62%), Gaps = 32/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR L+++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + +G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI LAKG++V+S+ + S + + + E+ ++ + + + Sbjct: 719 GVRGIRLAKGEEVVSLIV------------------SERAGGVEDEVEDESAEEVVETTD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE 878 Query: 903 VDEAESTE 910 E E Sbjct: 879 EPEDVVDE 886 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 + + + Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + ++ Sbjct: 825 STDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDV 883 Query: 752 ICYMKHMSAQRRLISG 767 + +++ G Sbjct: 884 VDEAVAITSDAPPAEG 899 >gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] Length = 908 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 457/896 (51%), Positives = 634/896 (70%), Gaps = 7/896 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 10 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 70 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 190 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W ++DI+++I+L Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 429 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + D S + G L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS+ Sbjct: 430 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S L+ I+KQ LL K +L TPR T I + + +++ E I +E+MVVTV+ G+VKRV L Sbjct: 489 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 548 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P + Sbjct: 549 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 608 Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG++L+NI L+ GE IT++MP +DE NL VVFAT GN+RRN LSDF + S Sbjct: 609 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 668 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 669 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 728 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 729 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 787 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ + N G +VA FPV+ D Sbjct: 788 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 845 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 Q++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + + ++ E Sbjct: 846 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901 >gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] Length = 884 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 410/911 (45%), Positives = 564/911 (61%), Gaps = 70/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG +LS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG+ L+N+L L+ E ITT++P E ++ AT G V++ Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYT---EGHFIFMATAKGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + G IA++LD D ++S E +++L + G+ RF S +R GR Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G ++ISM I Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT SE+G+GKRT+ +F R G+G+ A + N G Sbjct: 739 -------------PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899 LV V D ++I+L+SD+GTL+R V E+ R T+GV + AKDE++V +ER++E Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEP 843 Query: 900 SEIVDEAESTE 910 SE+ EA E Sbjct: 844 SEVEGEALEGE 854 Score = 71.0 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 139/426 (32%), Gaps = 30/426 (7%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + A L + + +R + + + L +D Sbjct: 470 LEHEKLLAEYQEILNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDL 529 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + ++ LA R ++ + L + +S + Sbjct: 530 TLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHT 589 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 LL + + + P +R G + E + + Sbjct: 590 TLLLFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFM 649 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+ PL + QR G + + + D + I V+ FS G V + Sbjct: 650 ATAKGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVMLFSDGGKVTRF 707 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + ARG + + L +G+++ +++ ++ A++ G +R Sbjct: 708 KESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGYGKRTA 758 Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +S+F + R G+ + + S D + +I+L + G VR ++ + G Sbjct: 759 ISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSL-G 817 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GV I LAK ++++ + V E + + + +E T Sbjct: 818 RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEALEGEEFEGEVIAAGDDNVDEPTLDAAA 877 Query: 779 SSVEGN 784 E Sbjct: 878 DEEEPQ 883 >gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069] gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069] Length = 879 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 403/896 (44%), Positives = 556/896 (62%), Gaps = 68/896 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G ++NK Sbjct: 3 ELAKEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVDF NYDGS EP VL R PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A+IDNPDI + LME I+GPDFPT A+I GR GI +AY TGRG I + Sbjct: 183 PPHNLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAIINGRAGIIDAYHTGRGKIYL 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R SH+E ++ IVVTE+PYQVNKA ++EKIAELV++K+I I LRDESD+ G R Sbjct: 243 RSRSHVETDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL++G +V+LN LY + +Q++F +NMVAL+ +P F L + AFV R EVV Sbjct: 303 MVIELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQPRLFNLKDAIDAFVTHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR++AHVL GLAIA+AN+D ++ +I+ SP P+ A+ LM R W + Sbjct: 363 TRRTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVST 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ + DG LS+ Q +AIL+LRL +LTGL D I E L Sbjct: 423 MLARAGTEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I+E L IL S RLL +I++EL V++ RR+ I++ LD+ D I ED+VVT Sbjct: 483 GLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK LS Y+AQRRGG+G+S M+DEDF+ L + STH ++L FSS G VY Sbjct: 543 LSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP +RGK ++N+L L GERI I+P E + +V AT +G V++ Sbjct: 603 KVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFS---EDKFVFMATANGTVKKTS 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + +G IA+ + DE++ V N I++ + G+ +RF + +R GR + Sbjct: 660 LEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L +G +VI M + Sbjct: 719 RGVRGMKLPEGAKVIQMIV----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ +LT +E G+GKRT+ D + R G+G+ + +S+ N GA+ Sbjct: 738 ------------AEEDGSVLTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN--GAV 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ PV D D+++L+S GTLIR V++IRI R T+GV + E +V ++RI Sbjct: 784 VSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGETLVGLQRI 839 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 98/252 (38%), Gaps = 15/252 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L + R G + D+D + + ++ F Sbjct: 640 FSEDKFVFMATANGTVKKTSLEQFSRPRSNGIIALTIA--DDDELIGVVETDGSNHIMMF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + + ARG + + L +G ++ ++ + + V+ AT Sbjct: 698 SDAGKVIRFDEANVRGMGRTARG---VRGMKLPEGAKVIQMI------VAEEDGSVLTAT 748 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + D R G+ + + ++S ++++L +K G +R Sbjct: 749 ENGYGKRTAMEDHPLRGRGGQGVISIQMSERNGAVVSAVPVIDGDEVMLISKGGTLIRTG 808 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + IR+ GRN+ GVR I L G+ ++ + ++ + D D+ + + Sbjct: 809 VDDIRIM-GRNTQGVRLIKLDDGETLVGLQRIVEIEDDEDDEDELEESEVVETSNNEESL 867 Query: 770 EEITSLKNDSSV 781 +E S + Sbjct: 868 DETDSQEAGDDE 879 >gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia] Length = 902 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 457/896 (51%), Positives = 634/896 (70%), Gaps = 7/896 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W ++DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + D S + G L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS+ Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S L+ I+KQ LL K +L TPR T I + + +++ E I +E+MVVTV+ G+VKRV L Sbjct: 483 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P + Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602 Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG++L+NI L+ GE IT++MP +DE NL VVFAT GN+RRN LSDF + S Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ + N G +VA FPV+ D Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 Q++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + + ++ E Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895 >gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616] gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] Length = 867 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 388/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L +G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E GFGKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERIRESEIVDEAESTE 910 +++I E+E D E+ E Sbjct: 844 SGLQQIAEAEDGD-GEADE 861 >gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253] Length = 878 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469] gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia fergusonii ATCC 35469] Length = 878 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I ++ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As] Length = 868 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 378/908 (41%), Positives = 548/908 (60%), Gaps = 70/908 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN+ Y K Sbjct: 6 KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+ ++ NP ++ LME + PDFPT +I G +G+++AY TGRG +V+R Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245 Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E + + I+V E+PYQVNK +LE+IAELV+EK+I I+ ++DESD+ G RVVI Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F VNMVAL +P L ++ AF++ R E++ RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P A+ L+ ++W + + ++ Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425 Query: 433 LIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D YLSE Q + IL++RL RLTGL +D I E + Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVME 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDIL+ R+ II E+ +++ E RR+ I D++ ED I +D+VVT+ Sbjct: 486 QIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTI 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PL+ YRAQRRGG+G+ +++D+V LF+ +TH +L FS+ G VY K Sbjct: 546 SHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ P+G +RGK L+N+ L GE+ITT++P + YV AT G V++ L Sbjct: 606 VYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFD---EQHYVFMATARGTVKKTPL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + F+ +G IA+ LD D ++ ++D++L + G+ VRF + +R GR + Sbjct: 663 TAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GREAR 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L VI++ + Sbjct: 722 GVRGMQLEADQSVIALLVAED--------------------------------------- 742 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + Q +LT +E G+GKRTS ++ R KG+ A S+ N G +V Sbjct: 743 -------------ETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERN--GKVV 787 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V +D+I+L++D G L+R V EIR RAT+GV + + ++ V+ + E++ Sbjct: 788 AACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEAD- 846 Query: 903 VDEAESTE 910 DE TE Sbjct: 847 DDELPPTE 854 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 14/237 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + +R G V + ++D++ I V+ F Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFVNRRTAG--IIAVALDEDDYLIGAAITDGQHDVMLF 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + + ++ + ED V+ AT Sbjct: 700 SDAGKAVRFDEADVRPMGREARGVRGMQL----EADQSVIALLVAED----ETQSVLTAT 751 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ ++I+L T G VR Sbjct: 752 ENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTR 811 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + IR GR + GV I+L +I + V+ AD D + Sbjct: 812 VEEIREM-GRATQGVTLIALDAKAHLIQVQPVVEADDDELPPTELPPAEDGGADTAA 867 >gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] Length = 892 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 415/899 (46%), Positives = 571/899 (63%), Gaps = 74/899 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+V+E Sbjct: 246 ASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +VILN LY T LQ+ F +NMVAL+ +P+ F+L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFSLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAIA+ N+DE++ +I+ +P P+ AR EL+ R W D+ +++ Sbjct: 366 IYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + G +L+E Q +AILELRL RLTGL + I E L I+ Sbjct: 426 AGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I+ EL +VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+ M+DEDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E E + YV AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEEDERITAILPVREYE---ADKYVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFAG 718 + +G IA+ L D ++ V+ +DI+L +K G+ VRF SA +R G Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM-G 721 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ LA+GD+V+S+ + Sbjct: 722 RTAAGVRGMKLAEGDKVVSLIV-------------------------------------- 743 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +LTV+E G+GKRT+ ++ +R+ +G+ + VS N Sbjct: 744 ---------------PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN-- 786 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G++V D D+ +++++ GTL+R V E+ R T+GV + TA++E VV ++RI Sbjct: 787 GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELVVGLQRI 845 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R +E + + + + + ++L +E ++T+S +G+ K D+ R Sbjct: 502 RDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHEGYVKYQILSDYEAQRR 561 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG--- 879 GKG AT + + I L N +D I+ S +G + + V ++ +ASR +G Sbjct: 562 GGKGKIATRMKDEDFIERL---LVANTHDTILCFSSRGRMYWLKVYQLPLASRTARGKPI 618 Query: 880 VVIFSTAKDERVVSVERIRESEIV 903 V I +DER+ ++ +RE E Sbjct: 619 VNILPLEEDERITAILPVREYEAD 642 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 74/435 (17%), Positives = 157/435 (36%), Gaps = 39/435 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP--ETARRELMQRSWNASDIKDLIDLI 434 L + + V+ L + + + + ++ +IR E E AS DL DLI Sbjct: 474 LEEYKGLLDVIEELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLI 533 Query: 435 DDSSYTIGSDGTMY-----LSEVQTRA-----ILELRLARLTGLGRDDIRNELNSLGIE- 483 + Y LS+ + + + R+ + R + N +++ Sbjct: 534 TQEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFS 593 Query: 484 ---IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 L + + ++++ + R T I+ + V Sbjct: 594 SRGRMYWLKVYQLPLASRTARGKPIVNILPLEEDERITAILPVRE-------YEADKYVF 646 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VK+ PL+ + R G V +R+ D + + I ++ ++ FS G V + Sbjct: 647 MATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVR 704 Query: 601 EKVWRLPIGSPQARGK----ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 G RG A + + L +G+++ +++ N V+ T++G Sbjct: 705 FYESADENGKGGVRGMGRTAAGVRGMKLAEGDKVVSLI------VPHNEGDVLTVTENGY 758 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+++ +R+ + + + D + ++ ++ T G VR ++ + Sbjct: 759 GKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITNGGTLVRTRVAEV 818 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + E + A DT+ Sbjct: 819 -SRVGRNTQGVTLIRTAEEELVVGLQRIDELEVVELEEDAIVDGEIAVDGEQVVDTDAAQ 877 Query: 774 SLKNDSSVEGNISEE 788 + DS + EE Sbjct: 878 QPEADSEQDEATDEE 892 >gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] Length = 896 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 457/912 (50%), Positives = 619/912 (67%), Gaps = 25/912 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +D I+ +SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETVLADP---SDISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +N+ Y K AR+ GEVMGKYHPHG+++IYDALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 QESGFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K A LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A IDNP I D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R +E+ GDR IV+T IPYQV K+ ++EKIAE ++KR+ I+D+R Sbjct: 238 YNTGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE L I++A Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEILGLRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEV+ RRTKY LNKARDRAH+L+GL +AV NLDEVV+IIR S +P AR L+ + Sbjct: 358 FIKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAK 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W +I + L++ I D + LS++Q RAIL+LRL RLT LGRD+I EL L Sbjct: 418 EWPIGEIAPYLRLVEAIENDIDGD-SYRLSDIQVRAILDLRLHRLTALGRDEIGKELAEL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L IL+ R +L ++++EL +++ E TPR + I +EDED I REDMVV Sbjct: 477 AEAITEYLAILADRVKLYAVMREELEAIEREFATPRLSEITAAADGIEDEDLIEREDMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L GE I+T++P PEDE W L+V+FAT G+VRRN Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAMGSVRRN 656 Query: 661 KLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + F + +GKIAMK D D ++ V + +D+LL T+ G+ +RF +R F Sbjct: 657 SMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREFQ 716 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 RNS GVRG+ LA GD VIS++++ + AD ++R Y++ + + Sbjct: 717 SRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKPEKDGEMQD------- 769 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + ++ EQFILTV G+GK +S+Y++R + R G+GI D N Sbjct: 770 ---------QAMFARMQENEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRN- 819 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA FP DQ++LV+D+ LIR+ ++ +R+ R + GV +F+ A +E VVS +I Sbjct: 820 -GPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAKI 878 Query: 898 RESEIVDEAEST 909 ESE + + Sbjct: 879 EESEAEADLDGE 890 >gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] Length = 908 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 452/895 (50%), Positives = 624/895 (69%), Gaps = 5/895 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 10 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 70 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 190 LGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S + + Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIEL 429 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S + G L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS+ Sbjct: 430 VSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILSTD 489 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV LS Sbjct: 490 SLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKLS 549 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P +R Sbjct: 550 NYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSSR 609 Query: 615 GKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G++L+NI L+ GE IT++MP +DE NL VVFAT GN+RRN LSDF + SG Sbjct: 610 GRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQYVPSSG 669 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ G Sbjct: 670 KIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSAG 729 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ E Sbjct: 730 DQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFLE 788 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + EQFILTV+E GFGKRTS+Y++RI++R G G+ + N G +VA FPV+ DQ Sbjct: 789 MACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTDQ 846 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + + ++ E Sbjct: 847 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901 >gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] Length = 886 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 388/914 (42%), Positives = 551/914 (60%), Gaps = 77/914 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ V+ +PD +D +MEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ Y +G DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ R+ II EL ++K E RRT + D+ Sbjct: 482 IVAEYKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D ++ + + Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKGVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG+ L G VI+M + Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ D+I+L++DKG L+R V EIR RAT+GV + + + Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846 Query: 888 DERVVSVERIRESE 901 ++ ++RI E++ Sbjct: 847 GAKLSGLQRIVEND 860 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 14/243 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + V + +G VK+ L + R+GG + D D++ + V+ Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 712 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS G + + ARG + + + + M ED V+ A Sbjct: 713 FSDGGKGVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTA 764 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 T++G +R + ++ + R G IA++ ++++ E++I+L T G VR Sbjct: 765 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRT 824 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ IR GR + GV I+L +G ++ + ++ DA+ + + G Sbjct: 825 RVAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANPPAADTTDDAPPSDAQDADGP 883 Query: 769 TEE 771 + E Sbjct: 884 STE 886 >gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627] gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627] Length = 875 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S ++DEDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+ E VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDAID 852 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R + ++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVEEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+G+ V+ + V D D + + Sbjct: 813 SIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDEDLDAIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E] gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii] gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii] gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22] gi|1093608|prf||2104274A DNA gyrase Length = 905 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 451/885 (50%), Positives = 632/885 (71%), Gaps = 8/885 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH L++D+ K TV F NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP Sbjct: 126 SRMAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG Sbjct: 186 HNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ I Sbjct: 246 KAEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ R Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLLNKARDRAH+L+GL IA++N+DE++ II+ S + A++ELM R W DI LI Sbjct: 366 TIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIK 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+DD + GT+ +EVQ +AILE++L RLT + ++ + +L L +I E L+IL+ Sbjct: 426 LVDD-KVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILA 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+RLL I+K+EL+ VK+E +PR T I G D + ED I RE+MVVTV+ GY+KRVP Sbjct: 485 SRTRLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ ++NILSL + E IT IMP PE++ W++L ++FAT GN+RR+ L DF +I +G Sbjct: 605 GKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQSNG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++R+ R S GVRG+ LAK Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKE 724 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM ++ ++ ++R Y+ +R I+ E N + N++ + E Sbjct: 725 DSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEELGVNLNADSILE 779 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+ Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++L+++ G LIR + +RI R T GV++F DE+VVSV I Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882 >gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 930 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 462/905 (51%), Positives = 624/905 (68%), Gaps = 12/905 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEIPDPPEPPAPSDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGAS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN E++D +A+I NPD+ LD L+ I+ GPDFPTG +ILG GI++A Sbjct: 181 GIAVGMATNIPTHNPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIILGHAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGSI+IR + IE+ DR IV+TEIPYQVNKA + E+IAELVR K+I I+D+R Sbjct: 241 FETGRGSILIRARAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+ +P L +L+A Sbjct: 301 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FITFREDVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMAT 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W+A+D++ L+ LI D + DG +YL+E Q R ILELRL RLTGL R+ I+ EL+ + Sbjct: 421 AWDAADVEPLLALIQDEGNVVT-DGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L I++SR R + ++ +EL +++ EL TPR T I + D DE I MVV Sbjct: 480 AARINELLTIIASRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+ R +D V F TH VLFFSS G Y+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP SP A+G+AL+N+L G+ IT ++P P+DE+ W NL++VFAT GNVRRN Sbjct: 600 EKVWRLPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---------DT 769 R+S GVRGI LA+GD+V S+ ++ H +A +ER +++ +A+RR + + Sbjct: 720 RDSSGVRGIRLAEGDEVNSLCVLNHVEATVEERASFLRMANARRRAENAALQAGEEAEEV 779 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 S + I ER E++ E+ +LTVS GFG+R+S+YD+R+S R G+GI Sbjct: 780 AAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIAN 839 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 + +VA PV + ++LV+D G LIRVPV++IR+ SR GV +F E Sbjct: 840 MTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLDTTE 899 Query: 890 RVVSV 894 RV SV Sbjct: 900 RVTSV 904 Score = 47.1 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 648 VVFATKHGNVRRNKLSDF-IQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKL 702 ++ + G RR+ D+ + IA E+++ D++L T Sbjct: 810 LLTVSNAGFGRRSSAYDYRVSGRGGQGIANMTFNGGKRGSEVVATLPVINGTDVMLVTDA 869 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G+ +R P+ IRV + R + GV L ++V S+ V+ D E + Sbjct: 870 GRLIRVPVDQIRVMS-RQASGVTLFRLDTTERVTSVFPVMDDGDDDAEDGGPDAPAAEDE 928 Query: 763 RL 764 Sbjct: 929 NA 930 >gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 899 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 395/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE +VVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + + + + + E + + Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEADDVDDVVETTD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + +ILT +E GFGKRT ++ R +G+ ++ N G LV Sbjct: 761 GAEAAVIEVADDGNVAYILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 903 VDEAESTE 910 E E Sbjct: 879 EVEDVVDE 886 >gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073] gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88] gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a] gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972] gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA] gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101] gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206] gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073] gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli S88] gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli ED1a] gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82] gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA] gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972] gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034] gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101] gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972] gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146] gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C] gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3] gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1] gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3] gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327] gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1] gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252] gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263] gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2] gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I ++ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N] gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N] Length = 883 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 386/908 (42%), Positives = 547/908 (60%), Gaps = 78/908 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEVV+GC+ + NP+ +D L+EII PDFPTG +I G G++ Y TGRG ++ Sbjct: 182 IPPHNLGEVVEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIYGMVGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV EK+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLISYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM R+W++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVR 421 Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ D + + DG LSE Q + IL +RL RLTGL +D I Sbjct: 422 EMLARADGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II +EL ++K E RR+ I +++ Sbjct: 482 IGEYKDVMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH + Sbjct: 542 EDLITPMDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L GE+IT ++P E ++ YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---DDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GR + GVRG+ L VI++ + Sbjct: 719 ENDVRPM-GRAARGVRGMMLEDSQSVIALLVAGD-------------------------- 751 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 752 --------------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V VN +D+I+L++ G L+R V+EIR RAT+GV + S Sbjct: 786 IQTSSRN--GRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843 Query: 890 RVVSVERI 897 + V R+ Sbjct: 844 SLSGVRRV 851 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 14/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ LS + R+ G + + D++ + V+ F Sbjct: 651 FSDDHYVFMATSRGTVKKTALSDFSNPRKAGIIAVDLD--EGDYLIGADLTDGKHDVMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + + + + + D + V+ AT Sbjct: 709 SDSGKAVRFDENDVRPMGRAARGVRGM----MLEDSQSVIALLVAGD----ESQSVLTAT 760 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R K + + ++ ++I+L T G VR Sbjct: 761 ENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVNPSDEIMLITTGGVLVRTR 820 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV IS+ G + + V +DAD DE + Sbjct: 821 VSEIREM-GRATQGVTLISVDDGSSLSGVRRVAESDADDDEAADAADGSDGADGVAESTE 879 Query: 770 EEIT 773 E Sbjct: 880 EPTE 883 >gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ +FV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIASFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 >gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS] gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] Length = 889 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 403/923 (43%), Positives = 565/923 (61%), Gaps = 78/923 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+ R PN+LVNG GGIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LMEII PDFPTG +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMEIIPAPDFPTGGIIYGINGVKDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+LKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F++ R EV Sbjct: 302 RLVIDLKRGEVPEVVLNNLYKQTQLQDTFGINMVALINGQPKLCNLKDLIQVFISHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P A+ ELM R+W++S ++ Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ S+ +GSDG LSE QT+ IL++RL RLTGL +D Sbjct: 422 EMLTRAHADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + EI + LDIL+ R+ II QEL ++K E RR+ I D+ Sbjct: 482 IVAEYKEVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQTKLGARRSHIEHSSFDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS G +Y KVW +P GS +RG+ ++N+ L +GE+IT ++ E S + Y Sbjct: 602 ILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRSFPADQY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L DF + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG++L +G VI+M + + Sbjct: 722 FDENDVRPM-GRNARGVRGMNLEEGQGVIAMLVAEDGE---------------------- 758 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 Q +LT ++ GFGKRTS ++ R KG+ Sbjct: 759 ------------------------------QSVLTATQMGFGKRTSISEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D+G L+R V+EIR RAT+GV + + Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGRATQGVTLIGLDE 846 Query: 888 DERVVSVERIRESEIV-DEAEST 909 ++ ++RI E++ D+ E T Sbjct: 847 GSQLSGLQRIVENDATLDDTEKT 869 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 14/245 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ PL + R+GG V + + D++ + V+ F Sbjct: 656 FPADQYVFMATSMGTVKKTPLDDFNNPRKGG--IIAVALDEGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG +N+ + + M ED V+ AT Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMNL----EEGQGVIAMLVAED----GEQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R +S++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 QMGFGKRTSISEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDRGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV I L +G Q+ + ++ DA D+ + + Sbjct: 826 VSEIREM-GRATQGVTLIGLDEGSQLSGLQRIVENDATLDDTEKTVDTDTGNDAGNDAAN 884 Query: 770 EEITS 774 E S Sbjct: 885 PETNS 889 >gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024] gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026] gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359] gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK2000] gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK966] gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354] gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185] gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299] gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli] gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli] gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli] gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli] gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli] gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli UMN026] gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. TW14359] gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042] gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185] gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354] gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212] gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101] gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89] gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687] gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905] gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G] gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125] gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044] gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905] gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82] gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli BL21(DE3)] gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)] gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489] gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007] Length = 875 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGEGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 898 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 396/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE I+VTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYV---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + A +E E + + Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGADEE------------------IEADDVDDVVETTD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 903 VDEAESTE 910 E + E Sbjct: 879 EVEDVAGE 886 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + ++ Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883 Query: 752 ICYMKHMSAQRRLIS 766 S + Sbjct: 884 AGEAAVASDTPPADA 898 >gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 391/906 (43%), Positives = 558/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFL---ADKYVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 >gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi] Length = 902 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 456/896 (50%), Positives = 633/896 (70%), Gaps = 7/896 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W ++DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + D S + G L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS+ Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV L Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P + Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602 Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG++L+NI L+ GE IT++MP +DE NL VVFAT GN+RRN LSDF + S Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ + N G +VA FPV+ D Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 Q++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + + ++ E Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895 >gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] Length = 894 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 459/911 (50%), Positives = 622/911 (68%), Gaps = 24/911 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +D I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETALADP---SDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NK Y K ARI G+V+GKYHPHG++AIYDALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A I+NP I +D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ GDR+ IV+T IPYQV K ++EKIAE ++KRI I+D+R Sbjct: 238 YHTGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE + I++A Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P AR L+ R Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W ++I + L++ D T LS+ Q RAIL+LRL RLT LGRD+I +EL L Sbjct: 418 DWPVAEIAPYLKLVEAIETEASGD-TYRLSDTQVRAILDLRLHRLTALGRDEIGSELAEL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L IL R +L ++++E +++ + TPR + I +EDED I RE+MVV Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIEDEDLIEREEMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L GE I T++P PEDE SW +L+V+FAT +G VRRN Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + F + +GKIAM+ D D ++ V T+E+D+LL T+ G+ +RF + +R F Sbjct: 657 SMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVRG++L D+VIS++I+ + AD D+R Y++ + + Sbjct: 717 RTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWKPEKEGEMQD-------- 768 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ +K +EQFILTV G+GK +S+Y++R + R G+GI D N Sbjct: 769 --------QDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRN-- 818 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA FP DQ++LV+D+ LIR+ ++ +R+ R++ GV +F+ + DE VVS +I Sbjct: 819 GPVVASFPATQADQLMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 878 Query: 899 ESEIVDEAEST 909 ES+ ++ T Sbjct: 879 ESDEAEDTAET 889 >gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739] gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739] Length = 875 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+ ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605] gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15] gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605] Length = 875 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 68.3 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I ++ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 899 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 395/908 (43%), Positives = 565/908 (62%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + + + + + E + + Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEGDEVDDVVEATD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G+ S +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GSESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S + Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 902 IVDEAEST 909 VDE Sbjct: 879 DVDEGVDE 886 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + D DE Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDDVDEG 883 Query: 752 ICYMKHMSAQRRLISG 767 + ++ Sbjct: 884 VDEASASVSETPPTDA 899 >gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301] gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T] gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227] gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. W3110] gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536] gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A] gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94] gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11] gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22] gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1] gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989] gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9] gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088] gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736] gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W] gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli] gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli] gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K12 substr. W3110] gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 301] gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 2457T] gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227] gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536] gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A] gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94] gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11] gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22] gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli 55989] gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI1] gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088] gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W] gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T] gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W] gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431] gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112] gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B] gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14] gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68] gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180] gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357] gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11] gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520] gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482] gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120] gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863] gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1] gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167] gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v] gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74] gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9] Length = 875 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] Length = 885 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 391/926 (42%), Positives = 556/926 (60%), Gaps = 80/926 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHMLRNPETSIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLIVVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P A+ ELM RSW++ ++ Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + +G DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ R+ II +EL S+K E RR+ I D+ Sbjct: 482 IVAEYKEVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRSIIEYSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P D S+ + + Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRF 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG+ L G VI+M + Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + + Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDE 846 Query: 888 DERVVSVERIRESE---IVDEAESTE 910 ++ ++RI E++ EA S E Sbjct: 847 GSKLSGLQRIVENDAHVGDVEAGSDE 872 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 14/240 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+GG + D D++ + V+ F Sbjct: 656 FPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGKHDVMLF 713 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + ARG + + + + M ED V+ AT Sbjct: 714 SDGGKAVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTAT 765 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ +++I+L T G VR Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV I+L +G ++ + ++ DA + + Sbjct: 826 VSEIREL-GRATQGVTLIALDEGSKLSGLQRIVENDAHVGDVEAGSDESAPDNAQPDAPE 884 >gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] Length = 899 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 396/908 (43%), Positives = 564/908 (62%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL++V++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + + + + + E + + Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEGDEVDDVVEATD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G S +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S + Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 902 IVDEAEST 909 VDE Sbjct: 879 EVDEGVDE 886 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + DE Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEG 883 Query: 752 ICYMKHMSAQRRLISG 767 + ++ Sbjct: 884 VDEASASVSETPPTDA 899 >gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] Length = 875 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTE---CEEGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 17/252 (6%) Query: 531 DCIVREDMVVTV--SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 E+ V + G VK+ L+ + R GK +V DE DL S Sbjct: 636 PVTECEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDE 693 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 V+ FS+ G V + K + + + L +G+++ +++ + + Sbjct: 694 VMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAI 744 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705 + AT++G +R ++++ +R+ K + + + + + I++ T G Sbjct: 745 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR +S I GRN+ GV I A+ + V+ + V + D + Sbjct: 805 VRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863 Query: 766 SGDTEEITSLKN 777 + + Sbjct: 864 PEVDVDDEPEEE 875 >gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] Length = 910 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 464/910 (50%), Positives = 622/910 (68%), Gaps = 23/910 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +D I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETALADP---SDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NK Y K ARI G+V+GKYHPHG++AIY ALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K + LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A IDN I +D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ GDR IV+T IPYQV K ++EKIAE ++KRI I+D+R Sbjct: 238 YHTGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE + I++A Sbjct: 298 DESSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P AR L+ R Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W ++I + L++ +G D + LS+ Q RAIL+LRL RLT LGRD+I NEL L Sbjct: 418 DWPVAEIAPYLKLVEAIETEVGGD-SYRLSDTQVRAILDLRLHRLTALGRDEIGNELAEL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L IL R +L ++++E +++ + TPR + I ++DED I RE+MVV Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIDDEDLIEREEMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L+ GE I T++P PEDE SW +L+V+FAT +G VRRN Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + F I +GKIAM+ D D ++ V T+E+D+LL T+ G+ +RF + +R F Sbjct: 657 SMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVRG++L K D+VIS++I+ + A+ +ER Y++ + + Sbjct: 717 RTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLRFAPWK---------------AE 761 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +S ER EL KEQFILTV G+GK +S+YD+R + R G+GI D N Sbjct: 762 KEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRN-- 819 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA FP D ++LV+D+ LIR+ + +R+ R++ GV +F+ + DE VVS +I Sbjct: 820 GPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 879 Query: 899 ESEIVDEAES 908 ES+ E + Sbjct: 880 ESDEETEVST 889 Score = 58.3 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 93/281 (33%), Gaps = 39/281 (13%) Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 ED + + G V+R + + GK +D + + +++ Sbjct: 631 PLPEDEDSWKDLHVMFATANGTVRRNSMDAFANIPSNGKIAMRFDDESDDRLIGVALLTE 690 Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPE 638 VL + G + + + G K ++SL+ R + Sbjct: 691 EDDVLLATRQGKAIRFQATDVREFQSRTSTGVRGMTLKKDDEVISLSILHRSGANQEERD 750 Query: 639 DESSW-----------------------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 D + +++ +G + + D+ + R G+ Sbjct: 751 DYLRFAPWKAEKEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGI 810 Query: 676 MKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 +D+ +++ + ++L T + +R + ++RV GR+S GVR +++ Sbjct: 811 TNIDNIGRNGPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVI-GRSSAGVRLFNVSDD 869 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + V+S A + +D + + +S + + Sbjct: 870 EHVVSAAKIEESDEETEVSTPAGLEVSPEASPEADPDLTEE 910 >gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8] gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8] Length = 889 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 546/911 (59%), Gaps = 78/911 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP +D LME+I PDFPTG +I G +G++ Y TGRG ++ Sbjct: 182 IPPHNLQEVVDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421 Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ D + + DG LS+ Q + IL +RL RLTGL +D I Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II EL ++K E RR+ I +++ Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L +GE+IT ++P E + YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFS---EDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG+ L VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMMLEDTQTVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRT ++ R KG+ A Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V V +D+I+L++ G L+R V+EIR RAT+GV + + Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDGS 843 Query: 890 RVVSVERIRES 900 + V R+ ES Sbjct: 844 SLSGVRRVVES 854 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 70/408 (17%), Positives = 139/408 (34%), Gaps = 31/408 (7%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + SDI+ +D +D + L Sbjct: 495 LLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITPTDMVVTL 554 Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 S I L+ R + + + L I ++ LL + + Sbjct: 555 S--HGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRVYW 612 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLS 554 + P+ TR G + E + V + + G VK+ PLS Sbjct: 613 LKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 672 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R+ G + D D++ + V+ FS G + + AR Sbjct: 673 DFSNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + + L + + ++ + V+ AT++G +R ++++ + R K Sbjct: 731 G---VRGMMLEDTQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKG 782 Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 + + +++ ++I+L T G VR +S IR GR + GV I++ Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLINVDD 841 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G + + V+ +DAD D + + ++ + Sbjct: 842 GSSLSGVRRVVESDADDDGDLGEDGQEADGGDDNGAADSTDSTEPTEQ 889 >gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39] gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI39] Length = 875 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPGATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 111/323 (34%), Gaps = 29/323 (8%) Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ + + L + ++ +L + + P TR G + Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPGATRGARGRPIVNLLP 624 Query: 532 CIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 E + + + G VK+ L+ + R GK +V DE Sbjct: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIG 684 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 DL S V+ FS+ G V + K + + + L +G+++ +++ Sbjct: 685 VDL--TSGEDEVMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI--- 736 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 + ++ AT++G +R ++++ +R+ K + + + + + Sbjct: 737 ---VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 I++ T G VR +S I GRN+ GV I A+ + V+ + V + D Sbjct: 794 QIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 852 Query: 755 MKHMSAQRRLISGDTEEITSLKN 777 + + + Sbjct: 853 GSAAEGDDEIAPEVDVDDEPEEE 875 >gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010] Length = 875 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 390/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ YL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 >gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 898 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 397/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYV---DNRYVFFATRNGTVKKTSL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + A +E E + + Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGADEE------------------IEADDVDDVVETTD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 903 VDEAESTE 910 E + E Sbjct: 879 EVEDVAGE 886 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + ++ Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883 Query: 752 ICYMKHMSAQRRLIS 766 S + Sbjct: 884 AGEAAVASDTPPADA 898 >gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21] gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21] Length = 836 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 404/895 (45%), Positives = 559/895 (62%), Gaps = 83/895 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R++ Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLT 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG VAVIDNP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R I Sbjct: 188 EVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247 Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G R+VIELK Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + ++LN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL RLTGL RD I EL + I +IL+S + Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++ Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARG Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L E+ITTI+P E ++ +++ AT++G V++ + ++ G IA Sbjct: 582 KAIVNLLNLAANEKITTILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D++++V + D+LL + G+ +RF +R GR S GVRG++L D V Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTV-GRVSRGVRGMTLEDEDVV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M I+ D Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++D+G ++RVPV I R T+GV + ++ERVV+V R+ E E DE E E Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGE 820 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 100/239 (41%), Gaps = 12/239 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G VK+ + Y R GG + + D + + + VL S+ Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLITVALTDGKQDVLLASA 664 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + K + +RG + ++L + + + E+ + + + T++ Sbjct: 665 NGKAIRFKEEDVRTVGRVSRG---VRGMTLEDEDVVIGMEILNENFT---DSTIFTVTEN 718 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 G +R ++S++ +R GK + + + + + ++ +ND++L T G+ +R P++ Sbjct: 719 GYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVA 778 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 GRN+ GVR + + ++V+++A + + + + + E Sbjct: 779 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGELDEIVELESGEEQGEE 836 >gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] Length = 875 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T +DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I + + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] Length = 867 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 387/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 +P HNL EVVD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 VPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L +G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E GFGKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERIRESEIVDEAESTE 910 +++I E+E D E+ E Sbjct: 844 SGLQQIAEAEDGD-GEADE 861 >gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407] Length = 875 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQ+NKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] Length = 875 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12] gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12] Length = 868 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 375/902 (41%), Positives = 545/902 (60%), Gaps = 69/902 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN+ Y K Sbjct: 6 KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+ ++ NP ++ LME + PDFPT +I G +G+++AY TGRG +V+R Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245 Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E + + I+V E+PYQVNK +LE+IAELV+EK+I I+ ++DESD+ G RVVI Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F VNMVAL +P L ++ AF++ R E++ RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P A+ L+ ++W + + ++ Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425 Query: 433 LIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D YLSE Q + IL++RL RLTGL +D I +E + Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVME 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDIL+ R+ II E+ +++ E RR+ I D++ ED I +D+VVT+ Sbjct: 486 QIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTI 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PL+ YRAQRRGG+G+ +++D+V LF+ +TH +L FS+ G VY K Sbjct: 546 SHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ P+G +RGK L+N+ L GE+ITT++P + YV AT G V++ L Sbjct: 606 VYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFD---EQHYVFMATARGTVKKTPL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + F +G IA+ LD D ++ ++D++L + G+ VRF + +R GR + Sbjct: 663 TAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GREAR 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L VI++ + Sbjct: 722 GVRGMQLEADQSVIALLVAED--------------------------------------- 742 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + Q +LT +E GFGKRTS ++ R KG+ A S+ N G +V Sbjct: 743 -------------ETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERN--GKVV 787 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V +D+I+L++D G L+R V EIR RAT+GV + + ++ V+ + E++ Sbjct: 788 AACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEADD 847 Query: 903 VD 904 + Sbjct: 848 DE 849 Score = 68.3 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 14/237 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + +R G V + D+D++ I V+ F Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFANRRTAG--IIAVGLDDDDYLIGAAITDGQHDVMLF 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + + ++ + ED V+ AT Sbjct: 700 SDAGKAVRFDEADVRPMGREARGVRGMQL----EADQSVIALLVAED----ETQSVLTAT 751 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ ++I+L T G VR Sbjct: 752 ENGFGKRTSITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTR 811 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + IR GR + GV I+L +I + V+ AD D Sbjct: 812 VEEIREM-GRATQGVTLIALDAKAHLIQVQPVVEADDDELPPAELPPAEDGGADTAE 867 >gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY] gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY] Length = 877 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 549/912 (60%), Gaps = 77/912 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ PD +D LMEII PDFPT +I G G+K Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G Sbjct: 242 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L ++K F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIKVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ ++ Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + + G LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + I++ LDIL+ +R+ II +EL +++ E RR+ I D+ Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P + + Y Sbjct: 602 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG+ L G VI+M + Sbjct: 722 FDENDVRPL-GRQARGVRGMMLEDGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT +E G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846 Query: 888 DERVVSVERIRE 899 ++ ++RI E Sbjct: 847 GAKLSGLQRIVE 858 >gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227] Length = 878 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 406/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 +S + Sbjct: 848 LDSID 852 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 15/246 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDSIDGSAAEGDDEIAPEVESDDDV 872 Query: 775 LKNDSS 780 + Sbjct: 873 ADDADE 878 >gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54] Length = 889 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 383/909 (42%), Positives = 544/909 (59%), Gaps = 78/909 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVDGC+ + NP +D LMEII PDFPTG VI G +G++ Y TGRG ++ Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIYGMSGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S ++ Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421 Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ D + + DG LS+ Q + IL +RL RLTGL +D I Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529 E + I + LDIL+ R+ II +EL ++K E RR+ I +++ Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDT 541 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I DMVVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH + Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L FS+ G VY KVW +P G+ +RGK ++N+ L +GE+IT ++P E + YV Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFS---EDHYVF 658 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 AT G V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R GRN+ GVRG+ L VI++ + Sbjct: 719 ENDVRPM-GRNARGVRGMMLEDTQNVIALLV----------------------------- 748 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + Q +LT +E G+GKRT ++ R KG+ A Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S N G +V V +D+I+L++ G L+R V EIR RAT+GV + + Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGS 843 Query: 890 RVVSVERIR 898 + V R+ Sbjct: 844 SLSGVRRVV 852 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 78/190 (41%), Gaps = 16/190 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D+++ M+ + + + + I + Sbjct: 468 MRLQRLTGLEQDKIVGEYKDIMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDT 527 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 S +E N +E ++L ++T+S G+ K ++R R G+G +AT + + + Sbjct: 528 RRSEIELNATELDTEDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893 I L F N +D ++ S++G + + V E+ +R ++G I + A+ E++ Sbjct: 588 WIDQL---FIANTHDFLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITV 644 Query: 894 VERIRESEIV 903 V ++E Sbjct: 645 VLPVKEFSED 654 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 138/408 (33%), Gaps = 31/408 (7%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + S+I+ +D +D + L Sbjct: 495 LLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITPTDMVVTL 554 Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 S I L+ R + + + L I ++ LL + + Sbjct: 555 S--HGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRVYW 612 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLS 554 + P+ TR G + E + V + + G VK+ PLS Sbjct: 613 LKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 672 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R+ G + D D++ + V+ FS G + + AR Sbjct: 673 DFSNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + + L + + ++ + V+ AT++G +R ++++ + R K Sbjct: 731 G---VRGMMLEDTQNVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKG 782 Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 + + +++ ++I+L T G VR ++ IR GR + GV I++ Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLINVDD 841 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G + + V+ +DAD D Q ++ + Sbjct: 842 GSSLSGVRRVVESDADDDSEDLDDGQEEGQEEGNGDAGATDSTEPTEQ 889 >gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] Length = 900 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 393/908 (43%), Positives = 562/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +++ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + A +E + + + + Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVA-- 776 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 777 ----------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S + Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 902 IVDEAEST 909 VDE Sbjct: 879 EVDEVVDE 886 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + DE Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEV 883 Query: 752 ICYMKHMSAQRRLISG 767 + ++ + Sbjct: 884 VDEAGASVSEAPPTTD 899 >gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202] gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202] Length = 885 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 413/896 (46%), Positives = 571/896 (63%), Gaps = 36/896 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I++ I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ + D SD++G + Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A A+V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG +LSE Q RAILELRL RLTGL + I +E +L + Sbjct: 423 LEAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF + +R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +S + + +T E + SSV Sbjct: 722 TGVRGIKLA------------------------TTEISDEVEDVEIETVENEDAEETSSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G + Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA DE VVS+ERI Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871 >gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] Length = 899 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 409/936 (43%), Positives = 573/936 (61%), Gaps = 98/936 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A+I NP++ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R Sbjct: 186 NLTEVVNGCLALIQNPELTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VI Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RR Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L R W ++K ++D Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLD 425 Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + DG Y+SE Q +AIL+LRL +LTGL + I E SL Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLEL 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL++ RL+ +I+ EL+ +K++ RRT I D+ ED I E++VVT+S Sbjct: 486 IAELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEENVVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK L+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV Sbjct: 546 HEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK ++N+L L ERIT I+P + E ++ Y+ AT G V++ L+ Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVRDYE---DDKYIFMATAFGTVKKTPLT 662 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA----------- 712 + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF + Sbjct: 663 AYSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNP 722 Query: 713 --------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 +R GR + GVRGI + +V+S+ + Sbjct: 723 VLDEEGKPEIRFKGVRPM-GRTATGVRGIKMPDDQRVVSLIV------------------ 763 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 + ILTV+E G+GKRT D+ Sbjct: 764 -----------------------------------PKNDGAILTVTENGYGKRTQLEDYP 788 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T+ Sbjct: 789 SKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQ 846 Query: 879 GVVIFSTAKDERVVSVERIRESEIVD----EAESTE 910 GV++ T +E+VV ++RI E E+ + + E E Sbjct: 847 GVILIRTIDEEQVVGLQRIEEIEVTESDLVDIEDVE 882 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PL+ Y QR G + D D+ ++ F Sbjct: 641 YEDDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDI--TDGSNEIMLF 698 Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636 + G V + K G P+ R K + + +G ++ Sbjct: 699 TDAGKVVRFKEAEETAVVDENGNPVLDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRV 758 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693 N+ ++ T++G +R +L D+ +R+ + + + + + Sbjct: 759 VSLIVPKNDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDN 818 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++I++ + G VR ++ + GRN+ GV I +QV+ + + + + + Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLVD 877 Query: 754 YMKHMSAQRRLISGDTEEITSL 775 + + + S Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899 >gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451] gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451] Length = 893 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 52/442 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEE 771 + EE Sbjct: 872 PEGEEALVENDAPVAQDDGEEE 893 >gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223] gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223] Length = 894 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 900 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 394/908 (43%), Positives = 562/908 (61%), Gaps = 33/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + A +E + + + + Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVA-- 776 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 777 ----------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S + Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 902 IVDEAEST 909 VDE Sbjct: 879 EVDEVVDE 886 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E N Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + DE Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEV 883 Query: 752 ICYMKHMSAQRRLISG 767 + ++ + Sbjct: 884 VDEAGASVSEAPPTTD 899 >gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] Length = 884 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 404/900 (44%), Positives = 557/900 (61%), Gaps = 69/900 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG+ L+N+L L+ E ITT++P E ++ AT G V++ Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYT---EGHFIFMATAKGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + G IA++LD D ++S E +++L + G+ RF S +R GR Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G ++ISM I Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT SE+G+GKRT+ +F R G+G+ A + N G Sbjct: 739 -------------PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V D ++I+L+SD+GTL+R V E+ R T+GV + AKDE++V +ER++E Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEP 843 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 139/426 (32%), Gaps = 30/426 (7%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + A L + + +R + + + L +D Sbjct: 470 LEHEKLLAEYQEILNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDL 529 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + ++ LA R ++ + L + +S + Sbjct: 530 TLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHT 589 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 LL + + + P +R G + E + + Sbjct: 590 TLLLFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFM 649 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+ PL + QR G + + + D + I V+ FS G V + Sbjct: 650 ATAKGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVMLFSDGGKVTRF 707 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + ARG + + L +G+++ +++ ++ A++ G +R Sbjct: 708 KESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGYGKRTA 758 Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +S+F + R G+ + + S D + +I+L + G VR ++ + G Sbjct: 759 ISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSL-G 817 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GV I LAK ++++ + V E + + + +E T Sbjct: 818 RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEELEGEEFDGEVVAAGDDNVDEPTLDAAA 877 Query: 779 SSVEGN 784 E Sbjct: 878 DEEEPQ 883 >gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] Length = 880 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 394/922 (42%), Positives = 556/922 (60%), Gaps = 77/922 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 TQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TVDF PNYDGS +EP+VL R PN+LVNG GGIAVGMATN Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLRNPEASIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + Q I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRAKVHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L ++K F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPKLCNLKDLIKVFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P A+ ELM + W++ ++ Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKLVR 421 Query: 429 DLIDLIDDSS----------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ Y +GSDG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + EI++ LDIL+ R+ II +EL ++K E RR+ + D+ Sbjct: 482 IVAEYKEVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++ E S + Y Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+ L G VI+M + Sbjct: 722 FDENDVRPM-GRNARGVRGMMLEDGQGVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + Q +LT + G+GKRTS ++ R KG+ Sbjct: 757 ----------------------------ELQSVLTATVNGYGKRTSITEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + Sbjct: 789 IAITQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIGLDE 846 Query: 888 DERVVSVERIRESEIVDEAEST 909 ++ ++RI E++ A+ T Sbjct: 847 GSKLSGLQRIVENDANPVADET 868 >gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586] gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586] Length = 894 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/919 (43%), Positives = 560/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ VE E+DI+L +K G+ VRF S Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G V +RD+D + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDALIGVEITDGESD 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] Length = 905 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 468/906 (51%), Positives = 646/906 (71%), Gaps = 8/906 (0%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S E +E I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G Sbjct: 1 MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +NK+Y K AR+ G+V+GKYHPHG A+YD+L RMAQD+SLRL L++GQGNFGS+DGD Sbjct: 61 HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG QEP VL A +PN+LVNG GGIAVG Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EVVD C A IDN DI + LME+++GPDFPTG I+G GIK+AY TGR Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I++RG + IE S I++TEIP+ VNKA+++EKIAELV +K+I I+ +RDES++ Sbjct: 241 GKIIVRGKTDIESDSLKH-AIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+ P+ TL I+ AF FR Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+ LM R WN S Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D+ DL+ L+DD + DG +L+E QT++ILELRL RLT R + +ELN+L EIK Sbjct: 420 DVYDLVKLVDD-RAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L+IL SR +LL +K EL +K++ T R T I + + ED I E++VVTV+ Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPLS YRAQ+RGGKGR G +++ED +T LFI +THTS+LFFS++G VY KV++ Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+ Y++FATKHGN+RRN LSD Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +GKIA++LD D ++SV++C + N +LL T+ G+ +RFP+ +RVF R S GV Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I LA D VISM I+ + + R Y+ R LI+ + + N + N Sbjct: 719 KAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIA---KNKSLQPNIDLSKYN 775 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++E+ + E+FILTVSE G+GK +S+Y++R++ R GKGI +VS + G +V+V Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSP--KTGKVVSV 833 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++++L++ G LIR +N +RI R+T GV++F T+KDE+VVS++ I++++ D Sbjct: 834 LSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893 Query: 905 EAESTE 910 + E Sbjct: 894 DCSDDE 899 >gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem] gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem] Length = 836 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 403/895 (45%), Positives = 560/895 (62%), Gaps = 83/895 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R++ Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL D+ K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL Sbjct: 128 QLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG VA+IDNP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R I Sbjct: 188 EVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247 Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G RVVIELK Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + +ILN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 308 KDENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL RLTGL R+ I EL + I +IL+S + Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLEREKIMEELREILKYIARLKEILASEA 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++ Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARG Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L E+ITTI+P E ++ +++ AT++G V++ + ++ G IA Sbjct: 582 KAIVNLLNLAANEKITTILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D++++V + D+LL + G+ +RF +R GR S GVRG++L D V Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTV-GRVSRGVRGMTLEGEDVV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M I+ D Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++D+G ++RVPV I R T+GV + ++ERVV+V R+ E E DE+E E Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGE 820 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 100/239 (41%), Gaps = 12/239 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G VK+ + Y R GG + + D + + + VL S+ Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLITVALTDGKQDVLLASA 664 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + K + +RG + ++L + + + E+ + + + T++ Sbjct: 665 NGKAIRFKEEDVRTVGRVSRG---VRGMTLEGEDVVIGMEILNENFT---DSTIFTVTEN 718 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 G +R ++S++ +R GK + + + + + ++ +ND++L T G+ +R P++ Sbjct: 719 GYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVA 778 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 GRN+ GVR + + ++V+++A + + + + M E Sbjct: 779 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGELDEMVELESGEEQGEE 836 >gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305] gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305] Length = 885 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 413/896 (46%), Positives = 571/896 (63%), Gaps = 36/896 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I++ I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ + D SD++G + Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A A+V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG +LSE Q RAILELRL RLTGL + I +E +L + Sbjct: 423 LEAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF + +R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +S + + +T E + SSV Sbjct: 722 TGVRGIKLA------------------------TTEISDEVEDVEIETVENEDTEETSSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G + Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA DE VVS+ERI Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871 >gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197] gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197] gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] Length = 875 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+ ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75] gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75] Length = 875 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I ++ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] Length = 894 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046] gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046] Length = 875 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c] gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c] Length = 897 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 407/926 (43%), Positives = 571/926 (61%), Gaps = 95/926 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+H + I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDH--------AQEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV Sbjct: 53 NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K +H LL DL K+TVDF PNYDG+ P VL + PN+L+NG Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + IE+ +E IVV EIPYQVNKA ++EKIAELV+EK+I I+ LR Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+V+E+KR S +V+LN LY T +Q++F +NMVAL+ +P+ F L+ IL+A Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLEILQA 352 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P A+ L + Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412 Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472 W D+ D+++ + + DG YL+E Q +AIL+LRL +LTGL + Sbjct: 413 GWALGDVSDMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L I E L IL S RL+ +I++EL ++DE RRT I D++ ED Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I RE++VVT+S GYVK L+ Y +QRRGGKG+S M++EDF+ L + +TH +L F Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G +Y KV++LP+ S ARG+ ++NIL L ERIT I+P E E YV+ AT Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFE---EGKYVLMAT 649 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711 +G V++ L + + +G IA+ L+ DE++ V+ +DI+L + G+ VRF Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709 Query: 712 -------------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 A+R GR + GVRGI L G +V+S+ + Sbjct: 710 RDSETGAVKIDPETGEEILALRPM-GRTATGVRGIRLQDGQKVVSLIV------------ 756 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 + ILT +E GFGKRT Sbjct: 757 -----------------------------------------PQGDGAILTATENGFGKRT 775 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 D+ +R+ +G+ + VS+ N G +V VND+D+I+L+SD+GTL+R V E+ Sbjct: 776 PVEDYPAKSRATQGVVSIKVSERN--GKVVGAVQVNDSDEIMLISDQGTLVRTRVGEVST 833 Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898 R T+GV + T +DE VV ++RI Sbjct: 834 VGRNTQGVRLIRTGEDEHVVGLQRID 859 Score = 78.7 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A+ + + + R + + + + + ++L +E+ + Sbjct: 480 LLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVV 539 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S +G+ K D+ R GKG AT + + + I L N +D I+ S +G Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKL---LVANTHDHILCFSTRG 596 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 L + V ++ +ASR +G V I +ER+ ++ I+E E Sbjct: 597 RLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEE 641 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 68/436 (15%), Positives = 140/436 (32%), Gaps = 27/436 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL+ + H+L + + E + IR E RR + + + Sbjct: 469 EHEKILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDE--RRTEITAASHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DI+DLI+ + Y + + R + + + + L + Sbjct: 527 IDIEDLIEREEVVVTLSREGYVKY--QKLNDYESQRRGGKGKSATKMKEEDFIEKLLVAN 584 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDM 538 + S L +K L + R E + + Sbjct: 585 THDHILCFSTRGRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEEGKY 644 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G VK+ L Y R G + DE D+ + ++ FS G V Sbjct: 645 VLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDI--TDGSSDIMLFSDAGKV 702 Query: 599 YKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLY 647 + G+ + + IL+L R T + + Sbjct: 703 VRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQDGQKVVSLIVPQGDGA 762 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704 ++ AT++G +R + D+ +R+ + + + +++ ++I+L + G Sbjct: 763 ILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVGAVQVNDSDEIMLISDQGT 822 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR + + GRN+ GVR I + + V+ + + + +E + Sbjct: 823 LVRTRVGEVSTV-GRNTQGVRLIRTGEDEHVVGLQRIDEVEELEEELEALAEGDETVEAA 881 Query: 765 ISGDTEEITSLKNDSS 780 S + Sbjct: 882 ASDVDNTTDEDPQNEE 897 >gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 391/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIPMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 >gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 900 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 460/894 (51%), Positives = 631/894 (70%), Gaps = 5/894 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I VSI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+ AIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ IDNP++ LD L+E++ GPDFPTG +ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K R++AH+ +GL IAV ++ EV++IIR + +P A REL+ + W S + I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEINTII 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + DG L+E+QT+AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L+ IK L +K+ PR+T I E D+E ED I +EDMVVTV+ GY+KRV Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR Q RGGKG+ G +++ED +T LF+ +THTS+LFFS+ G VY+ KV++LP+ P Sbjct: 542 LSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLAEPT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG+AL+NI L+ GE IT IMP P + N +VF T HGN+RRN L+DF I +G Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPSEN--DENQNIVFVTAHGNIRRNSLADFHYIPSNG 659 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA+KLD D ++SV+ C++ + +LL+T LG+ +RF +S +R F RNS GVRGI LAK Sbjct: 660 KIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM I+ + + Y+K A+R L + I S + + I + + Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNFIDSKLEKTLNDLGIDNKLFLK 778 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L + E+FILT++E GFGKRTS+Y++R++NR G GI + N G +VA FPV D Sbjct: 779 LAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRN--GNVVASFPVEQGDN 836 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 4/164 (2%) Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KE ++P+ L + I + + N +++ T++G +R Sbjct: 738 KELYLKVPLAKRLGTAINNFIDSKLEKTLNDLGIDNKLFLKLAMNEEFILTITENGFGKR 797 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVF 716 ++ NR G + + D +V Q ++I+L T G+ +R ++ IR Sbjct: 798 TSAYEYRVTNRGGVGITNILTTDRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIR-I 856 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 AGR++ GV ++V+S+A + D+ D +S+ Sbjct: 857 AGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEIDNSVSS 900 >gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297] gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297] Length = 881 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 408/909 (44%), Positives = 560/909 (61%), Gaps = 68/909 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Sbjct: 3 EIAKEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH LL DL K+TVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG +A+I+NPD+D+D LME I GPDFPTGA I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYINGRKGIVEAYRTGRGRIYM 242 Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + + RE I+V EIPYQVNKA ++EKIAELV+EK+I I++LRDESD++G R Sbjct: 243 RAKADVVVDEKTGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+LKRG S DV+LN LY T L+++F +N VAL +P+ L +L+AF+ R EVV Sbjct: 303 IAIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQPKVLNLKEMLEAFIRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR R H+L GLA+A+AN+DE++ +IR S A+ ++ RSW D+ Sbjct: 363 TRRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D YLS Q + IL++RL +LTGL D + E + Sbjct: 423 MLERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQII 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E L IL+S RL+ +I++EL+ VKDE R+T I+ LD+ ED I EDMVVT Sbjct: 483 DDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEIMTSRLDLSMEDLITEEDMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PL+ Y AQ+RGGKGRS ++D+DF+ L + S+H ++L FS+ G VY Sbjct: 543 ISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P S ARG+ ++N+L L ER+T I+P + + ++ AT G V++ Sbjct: 603 RVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFD---PDYFIFMATASGTVKKTS 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+ LD D ++ V E +++L + G+ VRF +R GR + Sbjct: 660 LDAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGISL G VIS+ + Sbjct: 719 RGVRGISLEDGQSVISLIV----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +E F+LT SE+G+GKRT +F R KG+ A + N G L Sbjct: 738 ------------PQEEGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRN--GKL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + D+++L+SD+GTL+R V+EI R T+GV + A DE++VS+ERI E E Sbjct: 784 VGAKQVFNGDEVMLISDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSIERIEEPE 843 Query: 902 IVDEAESTE 910 V E E Sbjct: 844 DVVEPLEGE 852 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 68/432 (15%), Positives = 144/432 (33%), Gaps = 36/432 (8%) Query: 376 LLNKARDRAH--VLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ---RSWNASDIKD 429 L K H ++ + ++ E +RI+ E R ELM+ +A + Sbjct: 462 RLQKLTGLEHDKLIGEYKQIIDDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEI 521 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECL 488 + +D S + ++ M ++ + L R R+ + E L Sbjct: 522 MTSRLDLSMEDLITEEDMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHL 581 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------ 542 + SS +L + + P+ +R G + E + + Sbjct: 582 LVASSHDTILCFSTFGKVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFD 641 Query: 543 --------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + G VK+ L + R G + + + D + + V+ S Sbjct: 642 PDYFIFMATASGTVKKTSLDAFSRPRSSG--LIALSLDEGDHLVGVACTDGEREVMLLSD 699 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G V + K + ARG + +SL G+ +V+ A++ Sbjct: 700 AGKVVRFKEEHVRPMGRTARG---VRGISLEDGQ------SVISLIVPQEEGFVLTASER 750 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R +++F R K + + S D +++ + ++++L + G VR + Sbjct: 751 GYGKRTVMTEFPTKGRGTKGVIAMVSNDRNGKLVGAKQVFNGDEVMLISDQGTLVRTRVD 810 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 I GRN+ GV+ I +A ++++S+ + + + Sbjct: 811 EISSL-GRNTQGVKLIRVADDEKLVSIERIEEPEDVVEPLEGEASESDGDAPQDDVIDTS 869 Query: 772 ITSLKNDSSVEG 783 + S + Sbjct: 870 ADTSDTQSDADD 881 >gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83] Length = 875 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+S Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSLQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587] gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587] Length = 894 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893] gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893] Length = 859 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 568/910 (62%), Gaps = 70/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH LL DL K+TVDF NYDG+ Q P VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+V+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G R Sbjct: 243 RARHEIEHDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+RG + DV++N L+ +T LQ++F +NMVAL +P+ L +L AFV R EVV Sbjct: 303 VVIELRRGENPDVVINNLFAHTQLQTVFGINMVALINGEPKILNLKEMLDAFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP A+ +LM + W D+ Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + + +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 423 MLERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDIL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + L+IL RL+ +I++EL +V E R T I D+ D I ED+VVT Sbjct: 483 EKIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY Sbjct: 543 ISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P S +RG+ ++NIL L +GERITT +P + + YV+ AT G V++ Sbjct: 603 RVFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYP---EDQYVLMATSAGVVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + +G IA+ LD D ++ + +++L + G+ VRF A+R + R + Sbjct: 660 LPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS-RTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI + +G V+S+ I Sbjct: 719 RGVRGIRMPEGHHVVSLII----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ +LT SE G+GKRT+ +F +R +G+ A S+ N G L Sbjct: 738 ------------PQEDAVLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN--GNL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900 V + + D+++L+SDKGTL+R +E+ + SR T+GV + + +DER+V VERI E+ Sbjct: 784 VTALQLFEGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843 Query: 901 EIVDEAESTE 910 + +E + E Sbjct: 844 DA-EEVDGEE 852 >gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] Length = 867 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 390/923 (42%), Positives = 560/923 (60%), Gaps = 80/923 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNNPGATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ LM+RSW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLARAETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL SVK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLVAGSEE-------------------------- 751 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 Q +LT +E G+GKRT ++ R KG+ A Sbjct: 752 --------------------------QTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI----RESEIVDEAESTE 910 +++I VDEA E Sbjct: 844 SGLQQIAEAEEGEGEVDEASDGE 866 >gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I ++ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171] gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ +A+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1] gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 816 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 378/898 (42%), Positives = 555/898 (61%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ E + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDEEEE 814 >gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145] gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145] Length = 879 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 402/892 (45%), Positives = 575/892 (64%), Gaps = 63/892 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++ ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K Sbjct: 7 EVSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 ++K AH LL DL K+TVDF NYDG+ + P VL + PN++VNG GIAVGMATNIP HN Sbjct: 127 MEKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++G +A+IDNP+I ++ LME I GPDFPT A I GR+GI AY TGRG I +R + Sbjct: 187 LTEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIHLRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 ++RG +V+LN LY T +Q +F +NMVAL+ +P+ F L +L AFV R EVV RR+ Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRREVVTRRS 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAI++AN+DEV+ +IR SP P A++ L+ R W ++ +++ Sbjct: 367 VYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLES 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG+ YL+E Q +AIL+LRL +LTGL + I +E L +I+ Sbjct: 427 AGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQIE 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL+ ++D R+T I D+ ED I ED+VVT+SH Sbjct: 487 ELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLINEEDVVVTLSHE 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG++ M+D+DFV L++ +TH ++L FS+ G +Y KV++ Sbjct: 547 GYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRIYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S +RGK ++N+L L ERIT I+P + + +V+ ATKHG V++ L ++ Sbjct: 607 LPLASRASRGKPIVNLLPLESDERITAILPTRDYP---EDKFVIMATKHGTVKKTPLPEY 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G IA+ L+ DE++ V+ E +I+L + G+ VRF +R GR + GVR Sbjct: 664 SRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +G +V+S+ + + Sbjct: 723 GIRLEEGQKVVSLIVPGTYED--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++ ILTV+E GFGKRT ++ +R+ KG+ + VS+ N GA+V Sbjct: 744 ---------EQQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERN--GAVVGAM 792 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D ++I+L+S+KGTL+R VNE+ + R T+GV + T DE+VV ++RI Sbjct: 793 EVVDGNEIMLISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844 Score = 83.3 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 70/426 (16%), Positives = 150/426 (35%), Gaps = 30/426 (7%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + IR N AR+ + + + Sbjct: 470 EHEKILDEYKGLLKQIEELLHILRSTERLMEVIREELVEIR--DNFGDARKTEITAAAHD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++DLI+ D Y L+E + + A D + + Sbjct: 528 ISMEDLINEEDVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + + ++++ R T I+ Sbjct: 588 DTILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLESDERITAILPTRD-------Y 640 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + V+ + G VK+ PL Y R GG + DE D+ ++ FS Sbjct: 641 PEDKFVIMATKHGTVKKTPLPEYSRPRNGGIIALNLNEGDELIGVDI--TDGEQEIMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G V + + ++ A G + + L +G+++ +++ P ++ T+ Sbjct: 699 DGGKVVRFREDQVRSMGRTATG---VRGIRLEEGQKVVSLI-VPGTYEDEQQAAILTVTE 754 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + ++ +R+ K + + + + N+I+L + G VR + Sbjct: 755 NGFGKRTLVEEYPTKSRATKGVVSIKVSERNGAVVGAMEVVDGNEIMLISNKGTLVRTRV 814 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + + GRN+ GVR I +QV+ + + D D E + +S + Sbjct: 815 NEV-SMVGRNTQGVRLIRTGDDEQVVGLQRIDEVDEDELEDVVVEGEVSEATSEQQPSDK 873 Query: 771 EITSLK 776 + + Sbjct: 874 SEANDE 879 >gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong] gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong] Length = 905 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 469/906 (51%), Positives = 650/906 (71%), Gaps = 8/906 (0%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S E +E I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G Sbjct: 1 MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +NK+Y K AR+ G+V+GKYHPHG A+YD+L RMAQD+SLRL L++GQGNFGS+DGD Sbjct: 61 HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG QEP VL A +PN+LVNG GGIAVG Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EVVD C A IDN +I + LME+++GPDFPTG I+G GIK+AY TGR Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I++RG + IE S I++TEIP+ VNKA+++EKIAELV +KRI I+ +RDES++ Sbjct: 241 GKIIVRGKTDIESDSLKH-AIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+ P+ TL I+ AF FR Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+ LM R WN S Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D+ DL+ L+DD + DG +L+E QT++ILELRL RLT R + +ELN+L EIK Sbjct: 420 DVYDLVKLVDD-RAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L+IL SR +LL +K EL +K++ T R T I + + ED I E++VVTV+ Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPLS YRAQ+RGGKGR G +++ED +T LFI +THTS+LFFS++G VY KV++ Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+ Y++FATKHGN+RRN LSD Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +GKIA++LD D ++SV++C +EN +LL T+ G+ +RFP+ +RVF R S GV Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I LA D VISM I+ + + R Y+ + R LI+ + S+ + N Sbjct: 719 KAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSID---LSKYN 775 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++E+ + E+FILTVSE G+GK +S+Y++R++ R GKG+ +VS ++ G +V+V Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVS--SKTGKVVSV 833 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 P +++++L++ G LIR +N +RI R+T GV++F T+KDE+VVS++ I++++ D Sbjct: 834 LPACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893 Query: 905 EAESTE 910 + E Sbjct: 894 DCSDDE 899 >gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933] gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli O157:H7 str. EDL933] Length = 875 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ ME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE +V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5] gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5] Length = 889 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 405/903 (44%), Positives = 563/903 (62%), Gaps = 69/903 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGREGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQ++F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVM 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG +LS Q +AILELRL RLTGL + + E + Sbjct: 423 TMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG+ L+N+L L++GE ITT++P E Y+ AT +G V++ Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDEGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + G IA++LD D ++S E +++L + G+ RF S +R GR Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ LA+G ++ISM I Sbjct: 719 ARGVRGMRLAEGQKLISMLI---------------------------------------- 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT SE+GFGKRT+ +F R G+G+ A ++ N G Sbjct: 739 -------------PEEGSQILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V D ++I+L+SD+GTL+R V+E+ R T+GV + A DE +V +ER++E Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEP 843 Query: 901 EIV 903 + Sbjct: 844 SEI 846 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 15/260 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + G VK+ PL + QR G + + + D + I V+ Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + K + ARG + + L +G+++ +++ ++ Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLAEGQKLISML------IPEEGSQILT 747 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 A++ G +R + +F + R G+ + + S + + +I+L + G VR Sbjct: 748 ASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVR 807 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + + GRN+ GV I LA + ++ + V E + + ++ Sbjct: 808 TRVDEVSSL-GRNTQGVTLIKLASDETLVGLERVQEPSEIEGEEFEGEEGAEFEGAVLDA 866 Query: 768 DTEEITSLKNDSSVEGNISE 787 + + + + E Sbjct: 867 VADTDEAAEGQQADAAGEEE 886 >gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] Length = 888 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 24 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 84 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 680 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 741 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 768 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 769 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 807 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 808 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865 Query: 892 VSVERI 897 +++I Sbjct: 866 SGLQQI 871 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 492 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 551 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 552 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 611 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 612 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 668 Query: 898 RE 899 +E Sbjct: 669 KE 670 >gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] Length = 888 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 415/902 (46%), Positives = 570/902 (63%), Gaps = 35/902 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +K Sbjct: 3 ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 YVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++GC+A I+N I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + + Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E TS REQIVVTE+PYQVNK ++EKIAELVR+KRI I+ + D SD++G + Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+K A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R W+ ++ + Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSEVQ RAILELRL RLTGL + I +E L + Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLV 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L IL+S RL+ +I++EL +K E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF +A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L + + +T E + SSV Sbjct: 722 TGVRGIKL-----------------------ATTEISVDDAEEVDIETVENEEAEEASSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G + Sbjct: 759 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA+DE VVS+ERI E E Sbjct: 817 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876 Query: 902 IV 903 Sbjct: 877 DD 878 Score = 84.1 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 19/236 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + S D L + QE+ ++ + G P+S R G + + D + Sbjct: 520 ITAASGDINLE-DLIAQEDVVVTLSHAGYVKYQPLSDYEA-QRRGGKGKSATKMKEDDFI 577 Query: 736 ISMAIVLHADA-------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + + D ++ + A R I L + Sbjct: 578 EKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILP 637 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++FI + G K+ S F SN G+ A + + L+ V N Sbjct: 638 VPNGEFSADKFIFMATASGTVKKVSLDAF--SNVRSSGLIALKLREG---DELIGVDITN 692 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +I+L S +G ++R +R R GV A E +SV ++E VD Sbjct: 693 GESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTE--ISV---DDAEEVD 743 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ T++G +R L ++ +R+ K + + + ++++ + + I+L T G Sbjct: 777 ILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGT 836 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 VR ++ + GRN+ GVR I A+ + V+S+ + + D E + + Sbjct: 837 LVRTRVNEV-SLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA 888 Score = 39.8 bits (91), Expect = 2.2, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740 D+++S+ + +IL T+ G R + R + GV I + + +V++ Sbjct: 763 DKVVSLVIPHTQGEILTVTQNGYGKRTALGEY-PVKSRATKGVVSIKVNERNGKVVAAVQ 821 Query: 741 VLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 V D + + G + + + E +S ER E++ Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881 Query: 800 ILTVSE 805 L+V E Sbjct: 882 NLSVEE 887 >gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] Length = 901 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 403/923 (43%), Positives = 570/923 (61%), Gaps = 92/923 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+ P++ ++ LME I GPDFPT A+I G+ GI+ AY TGRG ++R Sbjct: 186 NLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKAIMRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +QS F +NMVAL +P+ F L +L+AF+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L LA+A+AN+D ++ +I+ S +P A+ L+ + W +K +++ Sbjct: 366 VYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +++E Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + ++ RRT I +D+ ED I ED+VVT+SHL Sbjct: 486 GLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S QARG+ ++N+L L +GERIT I+P E E Y++ AT HG V++ L+++ Sbjct: 606 LPLASRQARGRPIVNLLPLQEGERITAILPVREYE---EGKYILMATSHGTVKKTALTEY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D+++ V+ ++I+L + G+ VRF Sbjct: 663 SRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRGI+L +G +V+S+ + Sbjct: 723 DEEGKPQINFKGVRPM-GRGATGVRGIALEEGQRVVSLIV-------------------- 761 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + ILTV+ GFGKRT ++ Sbjct: 762 ---------------------------------PKDDSAILTVTANGFGKRTELAEYPAK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 +R+ KG+ + V++ N G +V V +ND+I+L+SDKGTL+R P + I R T+GV Sbjct: 789 SRATKGVVSIKVTERN--GPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRESEIV 903 I TA DE VV ++RI E + Sbjct: 847 TIIRTADDETVVGLQRIDEIQDD 869 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 33/223 (14%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 +E+ ++ + LG P++ + R G + D V + + D Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQA-QRRGGKGKAATKVKDEDFVEKLLVANTHDTIL 590 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 D Y + I+ + ++IL + Sbjct: 591 CFSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATS 650 Query: 806 KGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 G K+T+ ++ SN GI A ++ L+ V + + +I+L SD G ++ Sbjct: 651 HGTVKKTALTEYSRPRSN----GIIAVNLKDG---DQLIGVDITDGSSEIMLFSDAGKVV 703 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 R + E V V+ + +E Sbjct: 704 RF--------------------KEGEEVAVVDENGNPVLDEEG 726 Score = 62.9 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 69/455 (15%), Positives = 147/455 (32%), Gaps = 62/455 (13%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII-------RFSPNPETARREL 417 E +++ + LL H+L + + E + +I R + +A Sbjct: 469 EHEKILQEYEELLEIIAGLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDIS 528 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 ++ N D+ + + + Y L++ Q + + Sbjct: 529 LEDLINEEDVVVTLSHLGYAKYQP-------LTDYQAQRRGG------------KGKAAT 569 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + E L + ++ +L L P +R G + E Sbjct: 570 KVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGER 629 Query: 538 MVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583 + + + G VK+ L+ Y R G V ++D D + + I Sbjct: 630 ITAILPVREYEEGKYILMATSHGTVKKTALTEYSRPRSNG--IIAVNLKDGDQLIGVDIT 687 Query: 584 STHTSVLFFSSLGFVYKEKVWRL-----PIGSP--QARGKALINILSLNQGER------- 629 + ++ FS G V + K G+P GK IN + R Sbjct: 688 DGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRG 747 Query: 630 --ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI--- 684 + ++ ++ T +G +R +L+++ +R+ K + + + Sbjct: 748 IALEEGQRVVSLIVPKDDSAILTVTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPV 807 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + + ++I+L + G VR P + GRN+ GV I A + V+ + + Sbjct: 808 VGAVQVGENDEIMLISDKGTLVRTPAIGV-SIIGRNTQGVTIIRTADDETVVGLQRIDEI 866 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 D E + + + DT+ +++ Sbjct: 867 QDDGSEYLEEGVEGAEGDIIAEADTQPTDDANDEA 901 >gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] Length = 903 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 390/908 (42%), Positives = 562/908 (61%), Gaps = 32/908 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE I+VTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G L+EVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLISPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L KG++V+S+ + A + + ++ + +D++ Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAAGVESDVEEESVEDVVETTDVADAAVIEVAENDDTA-- 776 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 777 ----------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 903 VDEAESTE 910 E + Sbjct: 879 EVEDVVDD 886 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 4/139 (2%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691 E + + Y++ AT++G +R L+++ + R + + + +++ Sbjct: 765 AVIEVAENDDTAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++LL + G VR S I GRN+ GV I L+KG+++ ++ + + + ++ Sbjct: 825 GTDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883 Query: 752 ICYMKHMSAQRRLISGDTE 770 + A TE Sbjct: 884 VDDAAVAPAPSTSELPPTE 902 >gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383] gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383] Length = 867 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A+ ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL SVK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + ++ A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147] Length = 866 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 557/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L +G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E GFGKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 RE Sbjct: 647 RE 648 >gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1] gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1] gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] Length = 888 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 24 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 84 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 680 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 741 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 768 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 769 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 807 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 808 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865 Query: 892 VSVERI 897 +++I Sbjct: 866 SGLQQI 871 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 492 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 551 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 552 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 611 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 612 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 668 Query: 898 RE 899 RE Sbjct: 669 RE 670 >gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315] gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315] Length = 867 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 556/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR+RI ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + ++ A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSR 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH] Length = 866 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12] Length = 875 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I PDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] Length = 894 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 559/919 (60%), Gaps = 92/919 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ L Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + E +LTV+E G+GKRTS ++ Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846 Query: 881 VIFSTAKDERVVSVERIRE 899 + T++ E VV ++RI E Sbjct: 847 TLIRTSEGESVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8] gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8] Length = 856 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 396/898 (44%), Positives = 559/898 (62%), Gaps = 69/898 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH LL DL K+TVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE RE I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G R Sbjct: 243 RARHEIEQDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+RG + DVI+N L+ T L+++F +NMVAL +P+ L +L AFV R EVV Sbjct: 303 VVIELRRGENPDVIINNLFAQTQLETVFGINMVALINGEPKTLNLKEMLDAFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+ A+ +LM + W D+ Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + + +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 423 MLERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL RL+ +I+ EL + + RRT I D+ D I ED+VVT Sbjct: 483 EKIADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K + Y+AQRRGG+G++ M+DEDF+ L + ++H ++L FS+ G VY Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P GS +RG+ ++NIL L++GERITT +P + + +V+ AT G V++ Sbjct: 603 RVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + SG IA+ LD D ++ +++L + G+ VRF +R + R + Sbjct: 660 LPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS-RTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI + +G V+S+ I Sbjct: 719 RGVRGIKMPEGHHVVSLII----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + ILT SE G+GKRT+ +F +R +G+ A S+ N G L Sbjct: 738 ------------PQEGGVILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN--GNL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIR 898 V + D DQ++L+SDKGTL+R +E+ + SR T+GV + A +DER+V VERI Sbjct: 784 VTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIRLAQEDERLVGVERIA 841 >gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336] gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336] Length = 881 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 416/913 (45%), Positives = 579/913 (63%), Gaps = 47/913 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +T VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDFTP--------NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 52 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q +NK YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV Sbjct: 53 DQSSNTYNKAYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TVDF PNYDG P VL + P +LVNG Sbjct: 113 DGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSS 172 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A +DN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 173 GIAVGMATNIPPHNLNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALINGRKGIEEA 232 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + IE RE IVVTEIPYQVNKA ++EKIAELVREK+I I+++R Sbjct: 233 YKTGRGKIYVRAKAEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVR 292 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G RV +E+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++A Sbjct: 293 DVSNKEGNRVEVEVKRDAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKLLNLKQIIEA 352 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EV+ RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ + Sbjct: 353 FVRHRREVITRRTVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQ 412 Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472 +W ++ ++ S + DG YLS+ Q RAIL+LRL RLTGL + Sbjct: 413 AWELGNVATMLSATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEK 472 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I E + IEI + L IL+S RL ++ +EL VK+E RRT I D+ ED Sbjct: 473 IVTEYQEILIEIGKLLHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDL 532 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I +ED++VT+SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L F Sbjct: 533 ITQEDVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCF 592 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G +Y KV++LP + ARG+ ++NIL L + ERIT I+P E + ++V AT Sbjct: 593 SSRGRLYWLKVYQLPQANRGARGRPIVNILPLQENERITAILPVAAYE---EDKFIVMAT 649 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 650 AGGLVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENA 709 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA + + E+I Sbjct: 710 VRAM-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDI 743 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++ N+ + + + ILT ++ G+GKRT+ ++ +R+ KG+ + V Sbjct: 744 SDEDTKEPLDLNVDKVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKV 803 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S N G +VA V +NDQI+L++D GTL+R V+EI I R T+GV + TA+ E+VV Sbjct: 804 SDRN--GKVVAATQVEENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVV 861 Query: 893 SVERIRESEIVDE 905 S+ER+ +++ +E Sbjct: 862 SLERVCDTDEDEE 874 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED + + + G VK++ L+ + R G + +RDED + + I ++ FS Sbjct: 640 EEDKFIVMATAGGLVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGTNEIMLFS 697 Query: 594 SLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------- 635 S G V + + + + AL N +S ++ + Sbjct: 698 SQGRVVRFEENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDEDTKEPLDLNVD 757 Query: 636 -FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCT 691 N+ ++ AT++G +R LS++ +R+ K + + D ++++ Sbjct: 758 KVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRNGKVVAATQVE 817 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + + I+L T G VR +S I GRN+ GVR I A+ +QV+S+ V D D + Sbjct: 818 ENDQIMLITDAGTLVRTRVSEI-SIVGRNTQGVRLIRTAETEQVVSLERVCDTDEDEEN 875 >gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] Length = 894 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 413/899 (45%), Positives = 567/899 (63%), Gaps = 74/899 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ PVV+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE RE I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+V+E Sbjct: 246 ANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +VILN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +I+ +P P+ AR L+ W D+ +++ Sbjct: 366 IFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + G +L+E Q +AILELRL RLTGL + I E L I+ Sbjct: 426 GGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I+ EL +VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+ M+DEDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+P E E + YV AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVREYE---ADKYVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFAG 718 + +G IA+ L D ++ V+ +DI+L +K G+ VRF SA +R G Sbjct: 663 SRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM-G 721 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ LA GD+V+S+ + Sbjct: 722 RTAAGVRGMKLAAGDKVVSLIV-------------------------------------- 743 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +LTV+E G+GKRT+ ++ +R+ +G+ + VS N Sbjct: 744 ---------------PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN-- 786 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G++V D D+ +++++ GTL+R V E+ R T+GV + TA E VV ++RI Sbjct: 787 GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELVVGLQRI 845 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 100/264 (37%), Gaps = 16/264 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + R G V +RD D + + I ++ ++ F Sbjct: 639 YEADKYVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDGDSLIGVDITNSTDDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGK----ALINILSLNQGERITTIMPFPEDESSWNNLYV 648 S G V + G RG A + + L G+++ +++ N V Sbjct: 697 SKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAAGDKVVSLI------VPHNEGDV 750 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705 + T++G +R L+++ +R+ + + + D + ++ ++ T G Sbjct: 751 LTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITNGGTL 810 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR ++ + GRN+ GV I A + V+ + + + E + Sbjct: 811 VRTRVAEV-SRVGRNTQGVTLIRTADKELVVGLQRIDELEVVELEEDAIVDGDVEVAVDG 869 Query: 766 SGDTEEITSLKNDSSVEGNISEER 789 + + + ++ E S + Sbjct: 870 EQVVDTDAAQQPEADSEQGESTDE 893 >gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264] Length = 866 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243] gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b] gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668] gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a] gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98] gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14] gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9] gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210] gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894] gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177] gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112] gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215] gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243] gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b] gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668] gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a] gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] Length = 866 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17] gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17] Length = 916 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 465/907 (51%), Positives = 625/907 (68%), Gaps = 23/907 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + ++ I+++SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MADETTLAEP---SDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G K Y K ARI G+VMGKYHPHG++AIYDALARMAQDWS+R+ LI+GQGNFGS+ Sbjct: 58 AESGFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K A+ LLDDL KDTVDF+PNYDGS +EP VL A+YPN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVV+ C+A ++N I ++ L EI+ PDFPTGA+ILGR+G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALILGRSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ GDR IV+TEIPYQ K A++EKIAE +EKRI I+D+R Sbjct: 238 YQTGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+VI+LKR A+ +V+LNQL+R+T Q+ F NM+A+ G +PE L I++A Sbjct: 298 DESNREGVRIVIDLKRDATPEVVLNQLWRHTPAQTSFPANMLAIRGGRPELLNLRDIIQA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FRE+V+ RR+K+ L KAR+RAH+L+GL IAV NLDEVVRIIR S +P AR L+ R Sbjct: 358 FVQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W ++I I L++ G T LSE Q RAIL+LRL RLT LGRD+I +EL L Sbjct: 418 EWPIAEIAPYIRLVEAVESE-GFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+IL++R +L +++ EL++++D+ TPRR+ I ++DED I REDMVV Sbjct: 477 ADSITELLEILANRVKLYEVMRGELVAIRDQFATPRRSEIAAAADGIDDEDLIEREDMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED VT+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSNHGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L GE I+T++P PEDE+ W L+V+FAT G VRRN Sbjct: 597 YKVWRLPEGGPATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAKGAVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + F + +GKIAM+ D D ++ V E+D+LL T+ G+ +RF +R F Sbjct: 657 SMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQS 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVRGI+L D+VIS++++ +ER Y++ + + Sbjct: 717 RTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPWKG---------------E 761 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +S ER +EL+ EQFILTV G+GK +S+Y++R + R G+GI D N Sbjct: 762 KEGEPELSVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARN-- 819 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA FP + Q++LV+D+ LIR+ + +R+ R + G+ +F+ A E VVS RI Sbjct: 820 GDVVASFPASKGHQLMLVTDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIE 879 Query: 899 ESEIVDE 905 E+E E Sbjct: 880 ETEEDAE 886 Score = 50.2 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 34/274 (12%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G V+R + + GK ED + + ++ VL + G Sbjct: 644 VMFATAKGAVRRNSMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRA 703 Query: 599 YKEKVWRLPI-----------------------------GSPQARGKALINILSLNQGER 629 + + G+ Q +A + + Sbjct: 704 IRFAADDVREFQSRTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPWKGEKE 763 Query: 630 ITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV- 687 + E +++ +G + + ++ + R G+ +D+ V Sbjct: 764 GEPELSVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGDVV 823 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 ++ + ++L T + +R ++++RV GR S G+R ++A G+ V+S A + + Sbjct: 824 ASFPASKGHQLMLVTDQAKLIRMSLASLRVI-GRGSAGLRLFNVAPGEHVVSAARIEETE 882 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 D + + A ++ Sbjct: 883 EDAEMNLADGTAEIAPEPDAEVGENLAAGPEDGE 916 >gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344] gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229] gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247] gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344] gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229] gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247] gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] Length = 866 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 RE Sbjct: 647 RE 648 >gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91] Length = 866 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 384/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ] gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ] Length = 910 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 405/951 (42%), Positives = 563/951 (59%), Gaps = 107/951 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A+ID+P++ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + IE R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQPRLLNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVE 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG YLS Q +AIL+LRL RLTGL + + E + Sbjct: 423 AMVERAGADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S RLL +I++EL +K E RRT IV +D+ D I E+ VV Sbjct: 483 LGQIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG++ ++DED+V L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646 K + +P S +RG+ L+N+L L++GE IT ++ + N Sbjct: 603 LKTYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALLE 662 Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 Y+ AT G V++ L F + ++G IA+ L Sbjct: 663 GEVVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLVE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ T +++L + G+ +RF +R GRN+ GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTM-GRNARGVRGMKLGKGQRLISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+G+GKRT F R G+G+ A ++ N GAL+ V + ++I+L+SD+G Sbjct: 789 LTASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIGAVQVREGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910 TL+R V+E+ R T+GV++ A+DE +V +ER++E S+ DE E Sbjct: 847 TLVRTRVDEVSSLGRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDE 897 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 15/234 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+VPL + R+ G + + + D + V+ FS G Sbjct: 689 YIFMATAFGTVKKVPLVQFSRPRKAG--LIALDLVEGDTLIAAATTDGAKEVMLFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+R+ +++ + ++ A++ G Sbjct: 747 VIRFAERVVRTMGRNARG---VRGMKLGKGQRLISML------IPESGAQILTASERGYG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + + + + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIGAVQVREGEEIMLISDQGTLVRTRVDEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 GRN+ GV I LA+ + ++ + V + DE + A D Sbjct: 858 SL-GRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDEETTPAGVAEGGED 910 >gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] Length = 867 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL SVK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + ++ A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12] gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12] Length = 905 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 403/925 (43%), Positives = 563/925 (60%), Gaps = 88/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P V+ R P +L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R Sbjct: 186 NMTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + ++ RE+I+V EIPYQVNKA ++EKIAELV++K+I I LRDESD+ G R+VIE Sbjct: 246 AEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +++ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMIECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL++ Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDIIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RLL +IK+EL + + RRT I +DM ED I ED+VVT+SHL Sbjct: 486 ALLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG+S ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S QARG+ ++N+L L++GE IT I+P E ++ Y++ AT HG V++ L + Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVREYA---DDKYIIMATSHGTVKKTALKAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L DE++ V+ +NDI+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRDSETGLVKLDPE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 A+R GR + GVRGI L G +V+S+ + Sbjct: 723 TNEELVALRPM-GRTATGVRGIRLEDGQKVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + ILTV+E G+GKRTS ++ +R+ K Sbjct: 757 ----------------------------PKENGAILTVTENGYGKRTSLEEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V +ND+I+L+SD+GTL+R P + R T+GV I Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRI 846 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 + E+VV ++RI E DE E E Sbjct: 847 VEGEKVVGLQRIDEI-HEDEVELDE 870 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 60/435 (13%), Positives = 144/435 (33%), Gaps = 26/435 (5%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435 L + + ++ L + + + ++ +I+ N +R+ ++ D+ ++ + Sbjct: 474 LAEYEELIDIIAALLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLI 533 Query: 436 DSSYTIGSDGTMYLSEVQ--TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + + + + ++ Q T + R + + + + L + + S Sbjct: 534 NEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFS 593 Query: 494 RSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L +K L + R E + + + ++ + G Sbjct: 594 DFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVREYADDKYIIMATSHGT 653 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE--KVWR 605 VK+ L Y R G V ++D D + + I ++ FS G V + V Sbjct: 654 VKKTALKAYSNPRANG--IIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRD 711 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656 G + + +++L R T + N ++ T++G Sbjct: 712 SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQKVVSLIVPKENGAILTVTENGY 771 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L ++ +R+ K + + + + + ++I+L + G VR P + + Sbjct: 772 GKRTSLEEYPAKSRATKGVVSIKVSERNGAVVGAVQVGENDEIMLISDRGTLVRTPATGV 831 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I + +G++V+ + + D E + + Sbjct: 832 STI-GRNTQGVTIIRIVEGEKVVGLQRIDEIHEDEVELDEEGNPIILEGDDAETGQVIEG 890 Query: 774 SLKNDSSVEGNISEE 788 E Sbjct: 891 EEPKGDDEPEAEPAE 905 >gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 897 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 405/926 (43%), Positives = 572/926 (61%), Gaps = 95/926 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+H + I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDH--------AQEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV Sbjct: 53 NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K +H LL DL K+TVDF PNYDG+ P VL + PN+L+NG Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + IE+ +E I+V EIPYQVNKA ++EKIAELV+EK+I I+ LR Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+V+E+KR S +V+LN LY T +Q++F +NMVAL+ +P+ F L+ ILKA Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLDILKA 352 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P A+ L + Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412 Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472 W D+ ++++ + + DG YL+E Q +AIL+LRL +LTGL + Sbjct: 413 GWQLGDVSEMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L I E L IL S RL+ +I++EL ++DE RRT I D++ ED Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I RE++VVT+S GYVK L+ Y +QRRGGKG+S M++EDF+ L + +TH +L F Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G +Y KV++LP+ S ARG+ ++NIL L + ERIT I+P E E YV+ AT Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFE---EGKYVLMAT 649 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711 +G V++ L + + +G IA+ L+ DE++ V+ +DI+L + G+ VRF Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709 Query: 712 -------------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 A+R GR + GVRGI L +G +V+S+ + Sbjct: 710 RDSETGAVKIDPETGEEILALRPM-GRTATGVRGIRLQEGQRVVSLIV------------ 756 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 + ILT +E GFGKRT Sbjct: 757 -----------------------------------------PQGDGAILTATENGFGKRT 775 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 D+ +R+ +G+ + VS+ N G +V VN++D+I+L+SD+GTL+R V E+ Sbjct: 776 PVEDYPAKSRATQGVVSIKVSERN--GKVVGAVQVNESDEIMLISDQGTLVRTRVGEVST 833 Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898 R T+GV + T DE VV ++RI Sbjct: 834 VGRNTQGVRLIRTGADEHVVGLQRID 859 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A+ + + + R + + + + + ++L +E+ + Sbjct: 480 LLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVV 539 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S +G+ K D+ R GKG AT + + + I L N +D I+ S +G Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKL---LVANTHDHILCFSTRG 596 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 L + V ++ +ASR +G V I ++ER+ ++ I+E E Sbjct: 597 RLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEE 641 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 67/436 (15%), Positives = 139/436 (31%), Gaps = 27/436 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL+ + H+L + + E + IR E RR + + + Sbjct: 469 EHEKILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDE--RRTEITAASHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DI+DLI+ + Y + + R + + + + L + Sbjct: 527 IDIEDLIEREEVVVTLSREGYVKY--QKLNDYESQRRGGKGKSATKMKEEDFIEKLLVAN 584 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDM 538 + S L +K L + R E + + Sbjct: 585 THDHILCFSTRGRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEEGKY 644 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G VK+ L Y R G + DE D+ + ++ FS G V Sbjct: 645 VLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDI--TDGSSDIMLFSDAGKV 702 Query: 599 YKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLY 647 + G+ + + IL+L R T + + Sbjct: 703 VRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQEGQRVVSLIVPQGDGA 762 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704 ++ AT++G +R + D+ +R+ + + + +++ + ++I+L + G Sbjct: 763 ILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVGAVQVNESDEIMLISDQGT 822 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR + + GRN+ GVR I + V+ + + + +E Sbjct: 823 LVRTRVGEVSTV-GRNTQGVRLIRTGADEHVVGLQRIDEVEELEEELEALSADDETIEAA 881 Query: 765 ISGDTEEITSLKNDSS 780 + + Sbjct: 882 ATDVENTTDEDPQNEE 897 >gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 887 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 402/900 (44%), Positives = 557/900 (61%), Gaps = 69/900 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG+ L+N+L L+ GE ITT++P E Y+ AT +G V++ Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + G IA++LD D ++S E +++L + G+ RF S +R GR Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G ++ISM I Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT S +G+GKRT+ +F R G+G+ A + N G Sbjct: 739 -------------PEEGSQILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V D ++I+L+SD+GTL+R V E+ R T+GV + A DE +V +ER++E Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLASDETLVGLERVQEP 843 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 102/261 (39%), Gaps = 15/261 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + G VK+ PL + QR G + + + D + I V+ Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + K + ARG + + L +G+++ +++ ++ Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILT 747 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 A+ G +R +S+F + R G+ + + S D + +I+L + G VR Sbjct: 748 ASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVR 807 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GRN+ GV I LA + ++ + V E + + ++ + L + Sbjct: 808 TRVAEVSSL-GRNTQGVTLIKLASDETLVGLERVQEPSEVEGEELEGEEGVAFEGTLGAD 866 Query: 768 DTEEITSLKNDSSVEGNISEE 788 + D++ + ++ Sbjct: 867 VDDVTGDQPLDAAADEEEPQD 887 >gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] Length = 902 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 455/896 (50%), Positives = 633/896 (70%), Gaps = 7/896 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W ++DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + D S + G L+ Q +AILE+RL RLTGL ++ + EL S+ I E ILS+ Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILST 482 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV L Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P + Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602 Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG++L+NI L+ GE IT++MP +DE NL VVFAT GN+RRN LSDF + S Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHAIEREQFL 781 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ + N G +VA FPV+ D Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 Q++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + + ++ E Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895 >gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10] gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10] Length = 946 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 514/903 (56%), Positives = 660/903 (73%), Gaps = 7/903 (0%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 ++ GI +++I DEM++SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M Sbjct: 19 ADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTMH 78 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G K Y KCA G+VMG+YHPHG+ A+YD+L R+AQDWS+R+ LI+GQGNFGSVD Sbjct: 79 ENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSVD 138 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GDPPAA RYTE R+QK A LL D+ KDTV+F NY QEPVVL ARYPN+LVNG GG Sbjct: 139 GDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAGG 198 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATN+P HNLGEV+DG +A+++NP + L++ I GPDFPTG +ILGRTG +NA Sbjct: 199 IAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLILGRTGARNAV 258 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRGSIV+R + IE+ DR I+V EIPYQVNKA+M+EKIA+LVR+K+I IADLRD Sbjct: 259 LTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADLRD 318 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G RVVIELKR A+ADVILNQL+R++ +Q+ F NM++L G +P+ + ILK F Sbjct: 319 ESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLVGGRPQLLGALDILKEF 378 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FREEVV RR K+ LNKARDRAHV++GLA+AVAN+DEV+ +IR +PNP TAR +LM R Sbjct: 379 LRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLMARD 438 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ L++L+ D + D T+ L+E Q RAILELRL RLTGLGR+++ NE +L Sbjct: 439 WPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAKTLA 498 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LD+L SR R+L II+ EL V++ TPRR+ V+ LD EDED I R++MVVT Sbjct: 499 DQIADLLDLLRSRQRVLDIIRDELTEVRENYATPRRSEFVDAELDFEDEDLIPRDEMVVT 558 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 V+H GY KR LS YRAQRRGGKGRSG+ +DEDF+ LF+ STH +LFFS+ G VYK Sbjct: 559 VTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLLFFSNRGMVYKT 618 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K WRLP+G+P RGKALIN+L L QGE IT+IM PEDES+W ++ V+FAT G VRRNK Sbjct: 619 KTWRLPLGAPNTRGKALINLLPLEQGETITSIMALPEDESTWADMNVMFATNKGTVRRNK 678 Query: 662 LSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LSDF+Q+NR+GKIAMKL + D+I++V CT+++D+ LTT G+ +RFP + +RVFAGRN Sbjct: 679 LSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRN 738 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSLKN 777 SVGVRGI LA+GD++ISMAI+ H D E YMKH +A RR + D E T Sbjct: 739 SVGVRGIRLAEGDELISMAILHHIDVTSPEARAYMKHATAMRRALGDDEEIETVNTDGDE 798 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D E +S ER EL E+F+LTV+ G GKR+S+YDFR+ R G+ ATD+ Sbjct: 799 DGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIK---R 855 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L A FPV D DQI+ V+D G LIR PV+ +RIASR+++GV + + E VV+V RI Sbjct: 856 DIPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRI 915 Query: 898 RES 900 +++ Sbjct: 916 QDA 918 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 5/240 (2%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +D V +H G R P + R G+ GV +L ++ + S Sbjct: 710 EQDDVFLTTHKGRAIRFPATDVRV--FAGRNSVGVRGIRLAEGDELISMAILHHIDVTSP 767 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 Y + + +N G+ + E +++ Sbjct: 768 EARAYMKHATAMRRALGDDEEIETVNTDGDEDGDDEAALSTERLAELGAAEEFLLTVASD 827 Query: 655 GNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISA 712 G +R+ DF + + +A RD LS ++ + I+ T GQ +RFP+ Sbjct: 828 GMGKRSSAYDFRVMGRGNNGVAATDIKRDIPLSASFPVEDADQIMAVTDGGQLIRFPVDT 887 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R A R+S GVR I L +G+ V+++ + A + DE A +GD+ Sbjct: 888 VR-IASRSSRGVRLIRLNEGENVVAVVRIQDAGDEGDEDGDGETVTDAGPAPEAGDSPSE 946 >gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] Length = 875 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] Length = 879 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 394/901 (43%), Positives = 558/901 (61%), Gaps = 70/901 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYDGS EP+V AR+PN+LVNG GIAVGMATN Sbjct: 122 YTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+D C+A++ NP++D++ L+E + PDFPT I G G+K Y TGRG ++ Sbjct: 182 IPPHNMTEVIDACLALLKNPEMDIEELIEYVPAPDFPTAGFIYGLAGVKEGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E R+ I++ E+PYQVNKA +L KI E+VREKR+ I+++RDESD+ G Sbjct: 242 MRARCHFEDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R VIELKRG +ADV+LN+LY+ T +Q F +NMVA+ +P L ++ AF+ R EV Sbjct: 302 RAVIELKRGENADVLLNKLYKDTQMQDSFGINMVAIVDGQPRLLNLKQVMDAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P A+RELM +SW + ++ Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVE 421 Query: 429 DLIDLIDDSSYT-----------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 D++ + D+S + +LS+ Q +AILELRL RLTG+ +D I E Sbjct: 422 DMLSRVSDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEY 481 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I + LDIL+ R+ II EL++VK + RR+ IV DM ED I ED Sbjct: 482 REVMDKIADLLDILAKPERVTAIIGDELVAVKTQFGDKRRSEIVTHTHDMSMEDLIPPED 541 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GY+K + Y+AQ+RGG+GR +D+DF+ +LF+ +TH +L FS+ G Sbjct: 542 VVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKGR 601 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY KV+ +P GS ARGK ++N+L L +GE+I I+P E + YV FAT +G V Sbjct: 602 VYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFA---EDKYVFFATANGTV 658 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L+DF + + G IA+ LD D ++ V +D++L + G+ VRF + +R Sbjct: 659 KKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRE-T 717 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR S GVRG+ L + QVISM + + Sbjct: 718 GRASRGVRGMKLHENQQVISMLVAEN---------------------------------- 743 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++Q +LT +E G+GKRT ++ R +G+ A S+ N Sbjct: 744 ------------------EQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSERN- 784 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA VN D+I+++ G LIR V EIR R T+GV + + K ER+ + RI Sbjct: 785 -GKVVAATLVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKGERLAGLSRI 843 Query: 898 R 898 Sbjct: 844 A 844 Score = 84.5 bits (207), Expect = 9e-14, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 110/248 (44%), Gaps = 14/248 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R +G + + ++D++ + I H V+ F Sbjct: 643 FAEDKYVFFATANGTVKKTTLTDF--SRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + + +RG + + L++ +++ +++ V+ AT Sbjct: 701 SNSGKAVRFDEADVRETGRASRG---VRGMKLHENQQVISMLVAEN-----EQQSVLTAT 752 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ E++I++ G +R Sbjct: 753 ENGYGKRTPVGEYTRHGRGTQGMIAIQTSERNGKVVAATLVNPEDEIMMIGTNGVLIRTR 812 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + IR GR + GV ++L KG+++ ++ + +D + E + + +I G Sbjct: 813 VREIREM-GRTTQGVTLMNLEKGERLAGLSRIAESDEEELEELDSGSGIEDSGNVIDGQE 871 Query: 770 EEITSLKN 777 E+ + ++ Sbjct: 872 EQESGTED 879 >gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] Length = 823 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 376/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L] gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus E33L] Length = 823 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 376/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1] gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1] Length = 823 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 377/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99] gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99] Length = 907 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 400/925 (43%), Positives = 561/925 (60%), Gaps = 88/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P V+ R P +L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI AY TGRG ++R Sbjct: 186 NITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRAIMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + ++ RE+I+V E+PYQVNKA ++EKIAELV++K+I I LRDESD+ G R+VIE Sbjct: 246 ADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LAIA+AN+D ++ +I+ S P A+ +L+ + W +K +++ Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + D YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEIIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RLL +IK+EL + + RRT I +DM ED I ED+VVT+SHL Sbjct: 486 ALLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PL+ Y+AQRRGGKG+ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S QARG+ ++N+L L++GE IT I+P + ++ YV+ AT HG V++ L + Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVRDYA---DDKYVIMATSHGTVKKTALKAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ ++DI+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 A+R GR + GVRGI L G +V+S+ + Sbjct: 723 TNEELVALRPM-GRTATGVRGIRLEDGQKVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + ILT++E G+GKRT+ ++ +R+ K Sbjct: 757 ----------------------------PKADGAILTITENGYGKRTALDEYPAKSRATK 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N GA+V V +ND+I+L+SD+GTL+R P + R T+GV I T Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRT 846 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 A+ E+VV ++RI E DE E E Sbjct: 847 AEGEKVVGLQRIDEI-HEDEVELDE 870 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 57/459 (12%), Positives = 147/459 (32%), Gaps = 28/459 (6%) Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 + + + + + +L + + ++ L + + + ++ +I Sbjct: 444 DDRYYLTEQQAQAILDLRLHKLTGLEH--EKILAEYEELIEIIAALLYILHSPERLLEVI 501 Query: 405 RFSPNPETARRELMQRSWNASDIKDL-IDLIDDSSYTIGSDGTMYLSEVQ--TRAILELR 461 + N +R+ ++ D+ ++ + + + + + ++ Q T + R Sbjct: 502 KEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQPLTDYQAQRR 561 Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR---- 517 + + + + L + + S L +K L + R Sbjct: 562 GGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQLPLASRQARGRPIVNL 621 Query: 518 --TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 E + + + V+ + G VK+ L Y R G V ++D D Sbjct: 622 LPLSEGEHITAILPVRDYADDKYVIMATSHGTVKKTALKAYSNPRANG--IIAVNLKDGD 679 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYK-----------EKVWRLPIGSPQARGKALINILSL 624 + + I + ++ FS G V + + + + Sbjct: 680 QLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAETNEELVALRPMGRTATG 739 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 +G R+ + ++ T++G +R L ++ +R+ K + + + Sbjct: 740 VRGIRLEDGQKVVSLIVPKADGAILTITENGYGKRTALDEYPAKSRATKGVVSIKVSERN 799 Query: 685 ---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 + + ++I+L + G VR P + + GRN+ GV I A+G++V+ + + Sbjct: 800 GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTI-GRNTQGVTIIRTAEGEKVVGLQRI 858 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 D E + + + Sbjct: 859 DEIHEDEVELDEEGNPIIQEGDNVEAGQVAEGEEPKGDD 897 >gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] Length = 866 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + ++ + DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 DMLMRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + YV Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 RE Sbjct: 647 RE 648 >gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03] gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07] gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22] gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26] gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32] gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12] Length = 921 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 466/905 (51%), Positives = 630/905 (69%), Gaps = 12/905 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE E + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++K Y K AR GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN EV+D +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 +ATGRG+++IR + IE+ DR+ I+VTEIPYQVNKA + E+IA+LVR K+I IAD+R Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP L +L+A Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 WNA+D++ L+ LI D + DG + L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 421 QWNAADVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+I+ S R + +++ EL + E+ TPR T I + D +DE I MVV Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+G R +D V F TH V+FFSS G VY+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KVWRLP P A+G+AL+N+L + IT ++P P+DE W L++VFAT GNVRRN Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE------- 771 R S GVRGI LA+GD+VIS+A++ H +A +ER Y++ +A+RR + Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDADTV 779 Query: 772 --ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + + S+ + +S ER +L+ E+ +L VS+ GFG+R+S+YD+R+S R G+GI Sbjct: 780 QVDSDEEEGSNTDALLSPERFAQLEEAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITN 839 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 S + A PV + ++LV+D G LIRVPV+++R+ +R GV +F DE Sbjct: 840 MTFSANKRGKEVAATLPVLEGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDE 899 Query: 890 RVVSV 894 RV SV Sbjct: 900 RVTSV 904 >gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] Length = 899 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 413/935 (44%), Positives = 575/935 (61%), Gaps = 98/935 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 GILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +H LL DL K+TVDF PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A+I NP++ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R + Sbjct: 187 LTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 247 EIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR SP P A+ L RSW ++K ++D Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDK 426 Query: 434 IDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + DG ++SE Q +AIL+LRL +LTGL + I E SL I Sbjct: 427 AGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL++ RL+ +I+ EL+ +K + RRT I D+ ED I E++VVT+SH Sbjct: 487 AELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L ERIT I+P E + Y+ AT G V++ L+ Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYA---EDKYIFMATAFGTVKKTPLTA 663 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------ 712 + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF + Sbjct: 664 YSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNPV 723 Query: 713 -------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 +R GR + GVRGI + +G +V+S+ + Sbjct: 724 LDEEGNPEIRFKGVRPM-GRTATGVRGIKMPEGQRVVSLIV------------------- 763 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 + ILTV+E G+GKRT D+ Sbjct: 764 ----------------------------------PKTDGAILTVTENGYGKRTLLEDYPA 789 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T+G Sbjct: 790 KSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQG 847 Query: 880 VVIFSTAKDERVVSVERIRESEIVD----EAESTE 910 V++ T +E+VV ++RI E E+ + + E E Sbjct: 848 VILIRTIDEEQVVGLQRIEEIEVTESDLIDIEDVE 882 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 93/262 (35%), Gaps = 22/262 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PL+ Y QR G V + + D + + + ++ F Sbjct: 641 YAEDKYIFMATAFGTVKKTPLTAYSRQRASG--IIAVNLNEGDSLIGVDVTDGSNEIMLF 698 Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636 + G V + K G+P+ R K + + +G ++ Sbjct: 699 TDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRV 758 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693 + ++ T++G +R L D+ +R+ + + + + + Sbjct: 759 VSLIVPKTDGAILTVTENGYGKRTLLEDYPAKSRATQGVVSIKVSERNGAVVGAVQVDDN 818 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++I++ + G VR ++ + GRN+ GV I +QV+ + + + + I Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLID 877 Query: 754 YMKHMSAQRRLISGDTEEITSL 775 + + + S Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899 >gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] Length = 887 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 405/900 (45%), Positives = 560/900 (62%), Gaps = 69/900 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W ++ + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG +LS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG+ L+N+L L+ GE ITT++P E Y+ AT +G V++ Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + G IA++LD D ++S E +++L + G+ RF S +R GR Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G ++ISM I Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT SE+G+GKRT+ +F R G+G+ A ++ N G Sbjct: 739 -------------PEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERN--GR 783 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V D ++I+L+SD+GTL+R V+E+ R T+GV + AKDE +V +ER++E Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEP 843 Score = 67.5 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 103/261 (39%), Gaps = 15/261 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + G VK+ PL + QR G + + + D + I V+ Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + K + ARG + + L +G+++ +++ ++ Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILT 747 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 A++ G +R +++F + R G+ + + S + + +I+L + G VR Sbjct: 748 ASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVR 807 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + + GRN+ GV I LAK + ++ + V E + + + + +I Sbjct: 808 TRVDEVSSL-GRNTQGVTLIKLAKDETLVGLERVQEPSEVEGEELEGEEGVELEDGVIGA 866 Query: 768 DTEEITSLKNDSSVEGNISEE 788 + ++ + + S++ Sbjct: 867 EPDDAVDNLQADAADEEESQD 887 >gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5] gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5] gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1] gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3] Length = 875 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] Length = 900 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 419/907 (46%), Positives = 582/907 (64%), Gaps = 33/907 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +NK Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N + ++ LM I GPDFPTGA+I GR GI++AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +EKT +REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R+W+ ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + +G +LSE Q RAILELRL RLTGL + I +E L Sbjct: 423 LEAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 V++LP S ARG ++NIL L + ERIT I+P P+ E S + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFST-DKFIFMATASGIVKKV 661 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F I SG I +KL DE++ V+ ++I+L + G+ VRF A+R GR Sbjct: 662 CLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSM-GRT 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRGI LA D + + + E + + + Sbjct: 721 ATGVRGIKLATSDILAD-------------------DIEDTEIVEIEQEETEDNTAVNLN 761 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +S + ILTV+E G+GKRT ++ I +R+ KG+ + V++ N G Sbjct: 762 IDRVVSLVIPRADIATSGDILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERN--GK 819 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V++ DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E Sbjct: 820 VVAAVQVDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSLERLCEP 879 Query: 901 EIVDEAE 907 E + E Sbjct: 880 EEDESNE 886 >gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1] Length = 846 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 384/905 (42%), Positives = 542/905 (59%), Gaps = 69/905 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+A++ NP+ +D L+EII PDFPT +I G G+K AY TGRG +V Sbjct: 182 IPPHNLNEVVDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTMGVKEAYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +H+E + +++ E+PYQVNK +++EKIAELV EK+I I+DLRDESD+ G Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T LQ F +NMVAL +P L +L+AF R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFFGHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KA R HVL GLA+A+AN+DE++ +I+ +P P A++ LM R+W + ++ Sbjct: 362 ITRRTVFELGKAE-RGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVE 420 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + + LS+VQ + IL++RL RLTGL +D I NE + Sbjct: 421 EMLKRAAMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL+ R+ +I EL +++ + R+ IV D+ ED I +D+VV Sbjct: 481 MDVIADLLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY Sbjct: 541 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + + A +A L +G +P E + N ++ AT G V++ Sbjct: 601 LKYTKCRKAAASA-VQAYRQPLPAGRGREDQCHLPVKEFD---ENHFIFMATAQGTVKKT 656 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F R+G IA+ LD D ++ E NDI+L + G+ V F +R GRN Sbjct: 657 ALVEFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRN 715 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +VIS+ I Sbjct: 716 TRGVRGMKLMPKQRVISLLIAEDDK----------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +L +E G+GKRT DFR S R +G++A S N G+ Sbjct: 741 -----------------QTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRN--GS 781 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V VND D+I+L++ G LIR V EIR RAT+GV + + ++E++ +E++ E+ Sbjct: 782 VVGARLVNDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVET 841 Query: 901 EIVDE 905 + DE Sbjct: 842 DDADE 846 >gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] Length = 824 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 378/896 (42%), Positives = 553/896 (61%), Gaps = 86/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 1 MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD Sbjct: 61 TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGR Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GSI++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR Sbjct: 241 GSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ + Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q +AIL++RL RLTGL R+ I E L I Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544 E IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS Sbjct: 575 EIPEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGVSKRTPLSS 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I+L DQV+ M IV Sbjct: 691 KAITLGDEDQVVGMEIVEEDVN-------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 713 ---------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + +D+ V +V + ++ Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 811 >gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] Length = 924 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 370/921 (40%), Positives = 552/921 (59%), Gaps = 28/921 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V EIR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSVERIRESEIVDEAEST 909 E +VS+ER+ E + E Sbjct: 885 ETLVSLERVAEEAEDENPEVE 905 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 110/277 (39%), Gaps = 40/277 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D + S ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDHLVGAAQTSGSDDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E++ ++L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G+ +R + IR GR + GVR I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGKLIRTKVEEIRE-TGRAAAGVRLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +S+ V D + + + A+ + + E Sbjct: 888 VSLERVAEEAEDENPEVENPEGNEAENAVSDTEGGEA 924 >gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 900 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 461/893 (51%), Positives = 630/893 (70%), Gaps = 5/893 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGSVDGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQ +HFLL+D+ ++TVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP Sbjct: 122 ARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D CV IDN ++ LD L++++ GPDFPTG ILGR+GI++A+ATGRGSIVI+G Sbjct: 182 HNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+E++I I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L++ A+AD ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K R++AH+ +GL IAV ++DEV++I+R + +PE A ++L+ + W S + I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTII 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + DG L+E+QT+AIL+++L RLTGL RD + ELNS+ +KE + L Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFLG 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L+ IK L V++ PR+T I E D+E ED I +EDMVVTV+ GY+KRV Sbjct: 482 SEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YR QRRGGKG+ G +++ED +T LF+ +THTS+LFFS++G VY+ KV++LP+ P Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG+AL+NI L GE IT IMP P + N +VFAT HGN+RRN L+DF I +G Sbjct: 602 ARGRALVNIFPLADGETITNIMPLPSESDESQN--IVFATAHGNIRRNSLADFHYIPSNG 659 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI LAK Sbjct: 660 KIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAKN 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM I+ + + Y+K A+R L + I S + I + + Sbjct: 720 DSVISMTILNGIGVTTETKELYLKVPLAKR-LETAVNNSIDSKLEKVLNDLGIDNKLFLK 778 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L E+FILT++E GFGKRTS+Y++R++NR G GI + N G +VA FPV +D Sbjct: 779 LAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRN--GNVVASFPVEQDDN 836 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I+L++DKG LIR+ VN IRIA R+T+GV +F T E+VVS +I + +E Sbjct: 837 IMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEE 889 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 4/164 (2%) Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KE ++P+ L + I + + N +++ T++G +R Sbjct: 738 KELYLKVPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFLKLAANEEFILTITENGFGKR 797 Query: 660 NKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 ++ NR G + + +++ Q+++I+L T G+ +R ++ IR Sbjct: 798 TSAYEYRVTNRGGIGITNILTTNRNGNVVASFPVEQDDNIMLITDKGKLIRISVNGIR-I 856 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 AGR++ GV ++V+S A + + + S+ Sbjct: 857 AGRSTQGVTLFKTESREKVVSAAKIEDPGSTEENMPEIGDSASS 900 >gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] Length = 866 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 401/908 (44%), Positives = 557/908 (61%), Gaps = 70/908 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF NYDG+ + P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+N D+ +D LME I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGIINGRAGILQAYRTGRGRIYVRAK 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H+E+ + +++TEIPYQ+NKA ++EKIAELV++K+I I +LRDESD+ G R+VI Sbjct: 246 HHVEEDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG DV++N L+ T ++S+F +NMVAL +P+ L L+ F+ R EVV RR Sbjct: 306 ELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQPKILDLKTALECFIRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R H+L GLA+A+AN+D V+ +I+ SP P A+ L+ +W D+ +++ Sbjct: 366 TVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQMLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + +G LS Q +AILELRL RLTGL + + E L I Sbjct: 426 RAGEDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLERI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL ++ +E RRT I D+ D I EDMVVT+SH Sbjct: 486 AELLKILGSHERLMEVIREELEAILEEYGDERRTEITASRKDLTVADLITEEDMVVTISH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL+ Y++QRRGGKG+S ++DEDF+ L I +TH ++L F+ G VY +V+ Sbjct: 546 GGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLRVF 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P+ S ARG+ ++NIL L++GERI+TI+P E + ++ AT G V++ L++ Sbjct: 606 EIPVASRTARGRPIVNILPLDEGERISTILPVGGYE---EDKFIFMATASGTVKKTALTN 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA+ L D ++ E+D++L T G+ +RF +R GR + GV Sbjct: 663 FSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ + G +VIS+ I Sbjct: 722 RGVKMDDGVKVISLIIPQEGGK-------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT SE G+GK+T+ DF + R G+G+ A S N G+L Sbjct: 744 ---------------ILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRN--GSLAGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D ++L+SD+GTL+R +EI R T+GV + A DER+VSV RI E E + Sbjct: 787 VQVFDGDDVMLISDQGTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPEEDE 846 Query: 905 --EAESTE 910 + E +E Sbjct: 847 LLQGEESE 854 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 15/239 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ L+ + R G ++ D + + V+ Sbjct: 640 YEEDKFIFMATASGTVKKTALTNFSRPRASGLIALDLLDDDHLIGAAI--TNGEDDVMLM 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 +S G + + + ARG + ++ + ++ A+ Sbjct: 698 TSAGKSMRFREEDVRPMGRTARGVRGV---------KMDDGVKVISLIIPQEGGKILTAS 748 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G ++ + DF R G+ + D +D++L + G VR Sbjct: 749 ENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRNGSLAGAVQVFDGDDVMLISDQGTLVRTG 808 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 I GRN+ GV I +A ++++S+A + + D + + + + + Sbjct: 809 GDEISEL-GRNTQGVTLIRVADDERLVSVARIEEPEEDELLQGEESEQQGEAQAEPAEE 866 >gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1] Length = 919 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDEADDTVLE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGSQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V E+ SR T+GV + A DE +V +ERI+E + E E Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+RI +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + D + + + + Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEAAGAEEA 916 Query: 775 LKN 777 + Sbjct: 917 PQE 919 >gi|118578454|ref|YP_899704.1| DNA gyrase, A subunit [Pelobacter propionicus DSM 2379] gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379] Length = 843 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 386/898 (42%), Positives = 564/898 (62%), Gaps = 61/898 (6%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M M +WNK Y K Sbjct: 6 QNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL++ +H LL DL K+TV PNY+ EP VL +++PN+L+NG GIAVGMATNIP H Sbjct: 126 RLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DG +AVI+NPD+ + L+ +I GPDFPTGA I GR GI++AY TGRG I IR Sbjct: 186 NLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIYGRQGIRDAYTTGRGIIQIRAK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE +R+ I+VTE+PYQVNKA ++EKIAELV+EK+I IA++RDESDR+G R+V+ Sbjct: 246 AHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIVV 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR + +V+LN LY+ T +Q+ F + ++A+ +P +L ++ F+ R EVV RR Sbjct: 306 EVKRDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNRPRILSLREMIDCFIEHRAEVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA RAH+L GL IA+ LD V+ +IR S P A++ LM+ ++ ++ ++ Sbjct: 366 TNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLARLE 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L +G D ++LSE+Q +AILE+RL RLTGL RD I +E + I +IL+ Sbjct: 426 L----PRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILA 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S + II EL ++D+ RR+ I + D+ ED I+ E+MVVT+SH GY+KR Sbjct: 482 SDREIFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSA 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + +YR+QRRGGKG++G+ R+EDFV LFI ST +L F+ G +Y KV+ +P G+ Sbjct: 542 VDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRT 601 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +GKA++N++++ E+ITTI+P E ++ AT++G V++ L ++ + G Sbjct: 602 TKGKAVVNLVNVGMEEKITTILPVKEFSEH---TFLFMATRNGVVKKTPLIEYSNVRSGG 658 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD D+++ V D+ L ++ G+ +RF +R GR + GVRG++L + Sbjct: 659 IIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSM-GRVTRGVRGMNLNED 717 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VI M IV + Sbjct: 718 DHVIGMEIVHNDVV---------------------------------------------- 731 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 I TV E G+GKRT ++R +R GKGI + N G++V V V++++ Sbjct: 732 ----GSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN--GSVVNVMQVSNDND 785 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++D G ++RVPV+ + R T+GV + +T + E+VV+V R+ E E DE E TE Sbjct: 786 LMVITDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVARLAEKEEDDENEGTE 843 >gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803] gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803] Length = 823 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 554/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VKD + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKDRFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] Length = 899 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 405/923 (43%), Positives = 565/923 (61%), Gaps = 93/923 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 2 TDRANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + +H LL DL K+TVD+ NYDG+ + P VL + PN+LVNG GIAVGMATN Sbjct: 122 YTEIRMARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A+I+NPDI +D L++ I GPDFPT A+I G+ GI+ AY TGRG + Sbjct: 182 IPPHNLNEVINGCLALINNPDITIDELIDYIPGPDFPTAAIISGKKGIEQAYKTGRGKVY 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + +E +E I+V E+PYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R Sbjct: 242 IRAKAEVETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+KRG +V+LN LY TS+Q++F +NMVAL+ +P+ L +L AFV R EVV Sbjct: 302 IVVEIKRGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQPKLLNLKEMLHAFVVHRREVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L+ R W+ ++ Sbjct: 362 TRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQS 421 Query: 430 LIDLIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + + DG +LS Q +AILELRL RLTGL + I E L Sbjct: 422 MLERTGESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQEL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L ILSS RLL +I+ EL K++ RRT I D+ ED I ED+VV Sbjct: 482 LDLIAELLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y Sbjct: 542 TLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP+ S ARGK +IN+L L ERIT I+P E E N Y+ AT G V++ Sbjct: 602 LKVYQLPLASRAARGKPIINLLPLEANERITAILPVREYE---ENKYIFMATAFGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------- 712 L+ + + SG IA+ L+ D ++ V+ N+I+L + G+ VRF S Sbjct: 659 PLTAYSRQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDEN 718 Query: 713 -----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 +R GR + GVRGI + +G +V+S+ + Sbjct: 719 GNLVLDENGQPEIKFKGVRPM-GRTATGVRGIKMGEGQRVVSLIV--------------- 762 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 + ILTV+E G+GKRT+ Sbjct: 763 --------------------------------------PKNDGSILTVTENGYGKRTNLE 784 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 D+ +R+ +G+ + VS+ N G +V V +ND+I+L+S++GTL+R V E+ R Sbjct: 785 DYPSKSRATQGVVSIKVSERN--GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGR 842 Query: 876 ATKGVVIFSTAKDERVVSVERIR 898 T+GV++ T +E VV ++RI Sbjct: 843 NTQGVILIRTIDEELVVGLQRID 865 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 22/263 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + G VK+ PL+ Y QR G + D D+ ++ F Sbjct: 640 YEENKYIFMATAFGTVKKTPLTAYSRQRSSGIIAVNLNEGDSLIGVDI--TDGTNEIMLF 697 Query: 593 SSLGFVYKEKVWRLPI-------------GSPQARGK---ALINILSLNQGERITTIMPF 636 S G V + K G P+ + K + + +G ++ Sbjct: 698 SDAGKVVRFKESEESEVLDENGNLVLDENGQPEIKFKGVRPMGRTATGVRGIKMGEGQRV 757 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQE 693 N+ ++ T++G +R L D+ +R+ + + + +++ + Sbjct: 758 VSLIVPKNDGSILTVTENGYGKRTNLEDYPSKSRATQGVVSIKVSERNGKVVGAVQVLEN 817 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++I+L + G VR + + GRN+ GV I + V+ + + + Sbjct: 818 DEIMLISNRGTLVRTRVQEVSTV-GRNTQGVILIRTIDEELVVGLQRIDEIEEAEYFEEV 876 Query: 754 YMKHMSAQRRLISGDTEEITSLK 776 + EI + + Sbjct: 877 VATSDDTPASETPDNEAEIPTAE 899 >gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] Length = 941 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 460/916 (50%), Positives = 640/916 (69%), Gaps = 12/916 (1%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 S +G +++ +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G Sbjct: 13 TGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMQENG 72 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 +K Y K AR+ G+VMGKYHPHG++AIYDA+ RMAQ +SLR+ LI+GQGNFGS+DGDP Sbjct: 73 FTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSMDGDP 132 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 PAA RYTE RL K+A LL+ + +DTVDF PNYD S QEP VL A +PN+LVNG GIAV Sbjct: 133 PAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGANGIAV 192 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIPTHN GEV+D +A+I P+ L+ LM+I+ GPDFPTGA+ILGR GI++A+ TG Sbjct: 193 GMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALILGRAGIRSAFETG 252 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RGSIV+R + IE+ G R I ++EIPYQVNKAA++E+IAELVR K+I I+DLRDESD Sbjct: 253 RGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDLRDESD 312 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+VIELK+ A+ +V+LN LYRYT+LQ+ F+VN +AL+ +P++ L L+AF+ F Sbjct: 313 RSGLRIVIELKKDATPEVVLNHLYRYTNLQTSFAVNFLALHQGRPQQMGLRQALQAFIDF 372 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 REEV++RR+++ L KARDR H+LVGLAIAVAN+DEV+R+IR SP+ TAR LM R W Sbjct: 373 REEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALMARDWPV 432 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +D+ L+ L+DDS + ++ T+ L+E Q R ILELRL RLTGL RD I EL+ + I Sbjct: 433 ADVGPLLALVDDSGNIVTNE-TVKLTEAQARGILELRLQRLTGLERDKINAELDEVAARI 491 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E L+IL+S R + ++ EL +V+ ++ +PR + IV+GL D +DE + MVVT++ Sbjct: 492 RELLEILASHPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMVVTLTR 551 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVKR PL +RAQ RGG+GRS MR +D V F TH VLFF+S G ++EKVW Sbjct: 552 DGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAFREKVW 611 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP P ARG++L +L L + E +T ++P P+DE W+NL++VFAT GNVRRN+LSD Sbjct: 612 KLPEAGPTARGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRRNRLSD 671 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSV 722 F + SG IAMKLD D ++ V TC + ++++L T+ G+ +RF + +RVFAGR+S Sbjct: 672 FKNVRASGLIAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFAGRDST 731 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTEEITS 774 GVRGI LA GDQVI+++++ H +A +ER Y+K + +RR + Sbjct: 732 GVRGIKLATGDQVIALSVLRHVEASVEERAAYLKQAAQKRRNGEEAAEAAAEAEASLAEE 791 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + VE +S ER EL+ +E+ +LTV++ GFGKR+S+Y++R++ R G+GI +S Sbjct: 792 NAEAAEVEIALSAERFAELEEQEEILLTVTDGGFGKRSSAYEYRVTGRGGQGITNITLSS 851 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++VA FPV D ++LV+D G LIR+P +++R+ R GV++ + E+V S Sbjct: 852 RTGR-SVVATFPVRMGDDVMLVTDNGRLIRLPADQVRVTGRQAMGVMMLRLNEAEKVTSC 910 Query: 895 ERIRESEIVDEAESTE 910 + E + ++ S E Sbjct: 911 FTVVEQQGGEDGISEE 926 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 5/122 (4%) Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVR 707 T G +R+ ++ R G+ + + +++ +D++L T G+ +R Sbjct: 821 TDGGFGKRSSAYEYRVTGRGGQGITNITLSSRTGRSVVATFPVRMGDDVMLVTDNGRLIR 880 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 P +RV GR ++GV + L + ++V S V+ D Sbjct: 881 LPADQVRV-TGRQAMGVMMLRLNEAEKVTSCFTVVEQQGGEDGISEEGAADGQPDLEPGA 939 Query: 768 DT 769 D Sbjct: 940 DG 941 >gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] Length = 934 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 463/919 (50%), Positives = 630/919 (68%), Gaps = 14/919 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE ++ + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEI---PEQTPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 58 RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL +AA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG Sbjct: 118 DGDSPAAMRYTEARLARAASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGAS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN GE++D +A+I+ PD+ LD +++ + GPDFPTG ILGR GI++A Sbjct: 178 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDILQYVPGPDFPTGGTILGRAGIRSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS++IR + +E DR+ I+VTEIPYQVNKA + E+IAELVR K++ I+D+R Sbjct: 238 FETGRGSVIIRARAEVEDIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P L +L+A Sbjct: 298 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLQA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEV++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ TAR LM+R Sbjct: 358 FIRFREEVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMER 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W+A DI L+ LI D + +L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 418 AWDAGDIAPLLALIHDEGNVVVDQRV-HLTEAQARGILELRLQRLTGLERDKIQQELSEV 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+I++SR R + +++ EL +V+ E+ TPR T I + D DE I MVV Sbjct: 477 ATRINELLEIIASRPRRMEVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+ R +D + F TH VLFFSS G Y+ Sbjct: 537 TITRDGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP SP A+G+AL+N+L + IT ++P P+DE W NL++VFAT GNVRRN Sbjct: 597 EKVWRLPEASPTAKGRALVNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 657 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--------DTE 770 R S GVRGI LA+GD+V S+ ++ H DA +ER Y++ +A+RR + T Sbjct: 717 RGSSGVRGIRLAEGDEVNSLCVLNHVDATVEERSAYLRIANARRRAENAAQNGEDTDTTP 776 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I S +++ + + ER E++ E+ +L VS GFG+R+S+YD+R+S R G GI Sbjct: 777 DIASDDEETATDLALPPERVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRGGLGINNM 836 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 A+VA PV ++LV+D G LIR+PV++IRI SR GV +F E Sbjct: 837 SFPTARRGNAVVATLPVLAGTDVMLVTDAGRLIRLPVDQIRIMSRQASGVTLFRLNDTEE 896 Query: 891 VVSVERIRESEIVDEAEST 909 V SV + + DE ++T Sbjct: 897 VTSVFPVMDDGEDDETDAT 915 Score = 47.5 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 648 VVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKL 702 ++ + G RR+ D+ R + + +++ D++L T Sbjct: 806 LLIVSNAGFGRRSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVLAGTDVMLVTDA 865 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G+ +R P+ IR+ + R + GV L ++V S+ V+ D + + Sbjct: 866 GRLIRLPVDQIRIMS-RQASGVTLFRLNDTEEVTSVFPVMDDGEDDETDATGTDENATGE 924 Query: 763 RLISGDTEEI 772 + D + Sbjct: 925 TGAATDGHDD 934 >gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] Length = 895 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 417/909 (45%), Positives = 575/909 (63%), Gaps = 36/909 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ Sbjct: 3 ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNI Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A I+N +I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + + Sbjct: 183 PPHNLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G + Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ + Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + DG YLSE Q RAILELRL RLTGL + I +E +L Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLT 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+ Sbjct: 483 EIGELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK PLS Y AQRRGGKG+S M+++DF+ L +V+TH ++L FSS G +Y+ K Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLYQLK 602 Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 V++LP S ARG ++NIL L + T + + + ++ AT G V++ Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +S++ + E ++SSV Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEDAEIVEIENEEADESSV 757 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G + Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E + Sbjct: 816 VAAVQVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEHD 875 Query: 902 IVDEAESTE 910 + +E+ + Sbjct: 876 EDENSEALD 884 >gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] Length = 824 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 378/897 (42%), Positives = 554/897 (61%), Gaps = 86/897 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 1 MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD Sbjct: 61 TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGR Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GSI++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR Sbjct: 241 GSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ + Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q +AIL++RL RLTGL R+ I E L I Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544 E IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS Sbjct: 575 EIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSS 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I+L + DQV+ M IV Sbjct: 691 KAITLGEEDQVVGMEIVEEDVN-------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 713 ---------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 812 >gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans] Length = 935 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 401/950 (42%), Positives = 564/950 (59%), Gaps = 79/950 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + H L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP ID+D LME I GPDFPT ++ G GI Y TGRG + + Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG +ADV+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQLLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G L+EVQ ILE+RL RLTGL ++ + E L Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I++EL+S+++E RRT I D++ D I ED+VVT+ Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP P ARG+ +IN + L QGER+ ++P E + YV FAT+ G V++ L Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710 S+F + GK+A+ LD D ++ V E D+LL G+ VRF Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAV 719 Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740 R GR+S GVRGI LAK + V+S+ + Sbjct: 720 DEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 A+ ++ A+ + ++ + +I Sbjct: 780 AEPAEGQDEDADDADLAQEAEADAQTRTADD------------------------ADAYI 815 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT +E G+GKRT ++ R +G+ S+ N G LV ++ D+++L+SD G Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R +EI R T+GV + +K E++ +VER+ S + +E S E Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923 >gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1] gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1] Length = 919 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEADDTVLE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGSQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V E+ SR T+GV + A DE +V +ERI+E + E E Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+RI +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + D + + + + Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEAAGAEEA 916 Query: 775 LKN 777 + Sbjct: 917 PQE 919 >gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 823 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4] gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4] Length = 907 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 401/916 (43%), Positives = 559/916 (61%), Gaps = 92/916 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R + Sbjct: 187 LVEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRTI 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 367 FELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLERA 426 Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + DG YL+E Q +AILELRL RLTGL + I +E +L EI E Sbjct: 427 GTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH G Sbjct: 487 LMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIAREDVVVTLSHEG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV++L Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARGK ++NIL L GERIT I+P E ++ AT G V++ L+ F Sbjct: 607 PHATRTARGKPIVNILPLEDGERITAILPVDEFS---PEKFIFMATGDGTVKKTPLNQFA 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------------- 712 + +G IA+ L D ++ V+ +++I+L +K G+ VRF + Sbjct: 664 NVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLD 723 Query: 713 -----------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRG+ L Sbjct: 724 ENGQPEIKFKGVRPM-GRTASGVRGMKL-------------------------------- 750 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + + E ILTV++ G+GKRT ++ Sbjct: 751 ---------------------AENDQVVSLIVPSNEGDILTVTQNGYGKRTELSEYPTKG 789 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R +G+ + VS+ N G +V V + D++++++D GTL+R V+E+ R T+GV Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVT 847 Query: 882 IFSTAKDERVVSVERI 897 + TA+DE VV ++RI Sbjct: 848 LIRTAEDESVVGLQRI 863 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 74/447 (16%), Positives = 157/447 (35%), Gaps = 36/447 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R E A Sbjct: 469 EHEKILDEYKTLLEEIAELMHILASTERLMEVIREELETVRDVYG-----DERRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L + E D E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEDGERITAILPVDEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKAG 700 Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640 V + K G P+ + K + S +G ++ Sbjct: 701 KVVRFKEAEEIPVLDEQGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697 N ++ T++G +R +LS++ R + + + + + + ++++ Sbjct: 761 VPSNEGDILTVTQNGYGKRTELSEYPTKGRGTQGVVSIKVSERNGPVVGAVQVEEGDEMM 820 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 + T G VR +S + GRN+ GV I A+ + V+ + + + + + + Sbjct: 821 MITDAGTLVRTRVSEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVEEVEEVELPEGEE 879 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784 A G E+ ++ + + Sbjct: 880 AEATEANAEGQAPEVPTVDDAAEGSEE 906 >gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187] gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1] gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187] gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus Q1] gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 823 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 554/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V ++ I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1] gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1] Length = 921 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 408/953 (42%), Positives = 561/953 (58%), Gaps = 109/953 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEEADDTVLE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGSQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910 TL+R V E+ SR T+GV + A DE +V +ERI E E+ D E+ E Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDDVVEADE 899 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+RI +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + D + + + + Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDDVVEADEEGVEAEAPDNEEAAGAE 916 Query: 775 LKNDS 779 Sbjct: 917 EAPQE 921 >gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W] gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W] Length = 823 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] Length = 823 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 552/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580] gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580] gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] Length = 822 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 386/904 (42%), Positives = 558/904 (61%), Gaps = 88/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV NPDI L LMEII GPDFPT +ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS + I++TEIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ V+ Sbjct: 303 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL +A+ +LDEV+ +IR S E A+ L+++ Sbjct: 363 RRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL VK+ + RRT IV +EDED I RE++VVT++H GY+ Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDLITRENIVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + + Y+ F TKHG +R LS F I Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVGEFD---DESYLFFTTKHGISKRTPLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V I++ TK G +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALSLRDEDELIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQM-GRTAAGVKGIN 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +L V+EKG+GK T + ++R+ +R GKG++ +++ N G+LV V Sbjct: 708 --------DSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENN--GSLVTVKATT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906 + +++++ G +IR+ + +I R T+GV + + E V +V + + E D E Sbjct: 758 GEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEENDSEEQ 817 Query: 907 ESTE 910 E+ E Sbjct: 818 EADE 821 >gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 390/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+R GLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + ++++ + +DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL +VK E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFS---ADKYVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 >gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] Length = 916 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 460/918 (50%), Positives = 613/918 (66%), Gaps = 25/918 (2%) Query: 1 MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ I E + I DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL Sbjct: 1 MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + + G K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF Sbjct: 61 WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS+D DPPA+ RYTE RL K A LL D+ KDTVDF+PNYDG+ QEP VL AR+PN+LVN Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GGIAVGMATNIP HNLGEV+DGC+A +DNP I+L+ L+ II GPDFPT +ILG G Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLILGTAGA 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 + AY GRGSI++R +E+ + IV+T IPYQV K+ ++EKIAE ++KRI Sbjct: 241 RKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+D+RDES+R+G RVVI+LKR A+ DV+LNQL+R T QS F NM+A+ G +PE L Sbjct: 301 ISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAIRGGRPELLGLK 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I+++FV FREEV+ RRTK+ L KARDRAH+L+GL IAV NLDEVV+IIR S NP AR Sbjct: 361 DIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARE 420 Query: 416 ELMQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 L+ R W +I I L++ + T LSE+Q RAIL+LRL RLT LGRD+I Sbjct: 421 RLLAREWPIGEIAPYIRLVEAIEDDALTGTETYRLSEIQVRAILDLRLHRLTALGRDEIG 480 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 EL L I E L IL+ R +L G++++EL++VK TPR + I ++DED I Sbjct: 481 EELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDLIE 540 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 R+DMVVT++ GY+KR PLS +RAQ RGGKGRSG+ +DED + +F+ STHT VLFFS+ Sbjct: 541 RDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFFST 600 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATK 653 G VY++KVWRLP G RG+ ++N+L L+QGE I ++ PEDE+ W L+V+FAT Sbjct: 601 AGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPIS 711 GNVRRN + F I +GK AMK + DE ++ V ++ +D+LL ++ G+ +RFP Sbjct: 661 KGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPAD 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R F R S GVRG++L GD+VIS++I+ E + Sbjct: 721 DVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEER--------------DEYLR 766 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 K + E I+ ER EL KEQF+LTV G+GK +S+Y++R + R G+GI D Sbjct: 767 YAPWKAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNID 826 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N G +VA FP DQ++LV+D+ LIR+P++ +R+ R + GV +F+ A +E+V Sbjct: 827 NIERN--GLVVASFPAARADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVADNEQV 884 Query: 892 VSVERIRESEIVDEAEST 909 VS R+ E+E D+A Sbjct: 885 VSAVRLAETEGDDDAGEE 902 Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 16/254 (6%) Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + S A DE + +++ ++ T G R P+S R R G Sbjct: 518 YATPRLSEITAPADGIDDE----DLIERDDMVVTITLDGYIKRTPLSTFRA-QNRGGKGR 572 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G++ D + +M + + RL G + + Sbjct: 573 SGMATKDEDAIATMFVASTHTPVLFFSTAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLD 632 Query: 785 ISEERCQELKLKEQF-------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 E L L E ++ + KG +R + F +GK A + +E Sbjct: 633 QGETIAAVLALPEDEAEWGKLHVMFATAKGNVRRNAMDAFANIPSNGK--FAMKFEEGDE 690 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896 L+ V +++ D ++L S +G IR P +++R SR + GV + + V+S+ Sbjct: 691 -DHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTGVRGMALKDGDEVISLSI 749 Query: 897 IRESEIVDEAESTE 910 + + D+ E E Sbjct: 750 LHRVGVRDQEERDE 763 Score = 51.7 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 91/262 (34%), Gaps = 35/262 (13%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ + G V+R + + GK DED + + ++S VL S G Sbjct: 655 VMFATAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKA 714 Query: 599 YKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDES---------- 641 + + G K ++SL+ R+ DE Sbjct: 715 IRFPADDVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRYAPWKAEK 774 Query: 642 --------------SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 S +V+ +G + + ++ + R G+ + +D+ + V Sbjct: 775 DGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNIERNGLV 834 Query: 688 ETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + ++L T + +R P+ ++RV GR S GVR ++A +QV+S + Sbjct: 835 VASFPAARADQLMLVTDQAKLIRLPLDSLRVI-GRGSAGVRLFNVADNEQVVSAVRLAET 893 Query: 745 DADYDERICYMKHMSAQRRLIS 766 + D D +A + Sbjct: 894 EGDDDAGEELTDSAAAPEGDGT 915 >gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73] gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans] Length = 935 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 401/950 (42%), Positives = 564/950 (59%), Gaps = 79/950 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + H L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP ID+D LME I GPDFPT ++ G GI Y TGRG + + Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG +ADV+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + G L+EVQ ILE+RL RLTGL ++ + E L Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I++EL+S+++E RRT I D++ D I ED+VVT+ Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP P ARG+ +IN + L QGER+ ++P E + YV FAT+ G V++ L Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710 S+F + GK+A+ LD D ++ V E D+LL G+ VRF Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAV 719 Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740 R GR+S GVRGI LAK + V+S+ + Sbjct: 720 DEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 A+ ++ A+ + ++ + +I Sbjct: 780 AEPAEGQDEDADDADLAQEAEADAQTRTADD------------------------ADAYI 815 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT +E G+GKRT ++ R +G+ S+ N G LV ++ D+++L+SD G Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R +EI R T+GV + +K E++ +VER+ S + +E S E Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923 >gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264] gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264] gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] Length = 823 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 378/894 (42%), Positives = 552/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGVSKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + +D+ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 810 >gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] Length = 921 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 371/922 (40%), Positives = 553/922 (59%), Gaps = 28/922 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSVERIRESEIVDEAESTE 910 E++VS+ER+ E A E Sbjct: 885 EQLVSLERVAEEPEDASASGEE 906 >gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] Length = 902 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 396/909 (43%), Positives = 566/909 (62%), Gaps = 34/909 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + +G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + KG++V+S+ + A I +++E + + + + Sbjct: 719 GVRGIRMPKGEEVVSLIVSDPAG------------------GIEIESDEDAADEVVDTTD 760 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 761 GADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--S 900 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878 Query: 901 EIVDEAEST 909 E+ D E Sbjct: 879 EVDDVMEEA 887 Score = 86.8 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +++ + G K+T +F R +G A ++ ++ ALV V + + ++ Sbjct: 640 ADNRYVFFATRNGTVKKTPLSEFAF--RLARGKIAINL---DDGDALVGVALTDGDRDVL 694 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 L + G +R + +R R GV K E VVS+ + + E ES E Sbjct: 695 LFASNGKTVRFGESTVRSMGRTATGVRGIRMPKGEEVVSL-IVSDPAGGIEIESDE 749 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 95/267 (35%), Gaps = 32/267 (11%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VK+ PLS + + GK + + D D + + + VL F Sbjct: 639 YADNRYVFFATRNGTVKKTPLSEFAFRLARGKI--AINLDDGDALVGVALTDGDRDVLLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINI-----------------LSLNQGERITTIM- 634 +S G + + A G I + + + E + Sbjct: 697 ASNGKTVRFGESTVRSMGRTATGVRGIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVV 756 Query: 635 --------PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDE 683 + N Y++ AT++G +R L+++ + R + + + + Sbjct: 757 DTTDGADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGK 816 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++ +++LL + G VR S I GRN+ GV I L+KG+++ ++ + Sbjct: 817 LVRAVLLGATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDA 875 Query: 744 ADADYDERICYMKHMSAQRRLISGDTE 770 + + D+ + + E Sbjct: 876 SLDEVDDVMEEASVSAESMAPPPVTEE 902 >gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107] gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107] Length = 883 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 412/899 (45%), Positives = 564/899 (62%), Gaps = 68/899 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH L+ DL K+TVDF PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVV GC+A++DNPDI +D LME I GPDFPTGA+I GR GI AY TGRG +V+R Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAIINGRAGIVEAYRTGRGRVVMRAK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE RE I+VTEIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G R+VI Sbjct: 246 AEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+K+ S DV+LN L+ T LQ+ F VNMVAL+ +P+ L +L+AF+ R EVV RR Sbjct: 306 EVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQPKLLNLKDMLEAFIRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P A+ L R W A + ++ Sbjct: 366 TVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D++ DG YLS Q +AIL+LRL RLTG+ D + E + EI Sbjct: 426 RAGDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L+IL + RL+ +I+ EL V + RRT I+ LD+ ED I ED VVT+SH Sbjct: 486 AEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDLIAVEDRVVTISH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL+ Y+AQRRGG G+S ++DEDFV L I STH ++L F+S+G VY KV+ Sbjct: 546 GGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKVYSLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P Q+RG+ ++N+L L +GERIT+I+P + N+ ++ AT+ G V++ L++ Sbjct: 606 MIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYD---NDHFIFMATRKGTVKKTVLTE 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +GK A++LD D ++ D++L + G+ RF S +R GR+S GV Sbjct: 663 FQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAM-GRSSRGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI +A+G ++ M I Sbjct: 722 RGIRIAEGQFIVGMVI-------------------------------------------- 737 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L +LTVSE G+GKRT +F R +G+ + N G LV Sbjct: 738 ---------PLAGGQVLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRN--GELVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D ++I+L+SD+GT++R V+E+ + SR T+GV + ER+ +ERI ES Sbjct: 787 VQVFDGEEIMLISDQGTMVRTRVDEVSLLSRNTQGVRLIKLKDGERMQGIERIEESADE 845 Score = 68.7 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 15/258 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + G VK+ L+ +++ R GK + D T + + V+ Sbjct: 638 KSYDNDHFIFMATRKGTVKKTVLTEFQSLRANGKRAIELDEGDTLVGTAV--TNGACDVI 695 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FSS G + + ++ +RG I RI V+ Sbjct: 696 LFSSSGKAARFRESQVRAMGRSSRGVRGI---------RIAEGQFIVGMVIPLAGGQVLT 746 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707 +++G +R + +F R + + + + D E++ +I+L + G VR Sbjct: 747 VSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNGELVGAVQVFDGEEIMLISDQGTMVR 806 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + + + + RN+ GVR I L G+++ + + + + +R Sbjct: 807 TRVDEVSLLS-RNTQGVRLIKLKDGERMQGIERIEESADENAKRELANAEEGDVEISDES 865 Query: 768 DTEEITSLKNDSSVEGNI 785 D + + ++ + Sbjct: 866 DIDLDAQADSQNNETADD 883 >gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] Length = 867 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL SVK E RR++I ++ ED Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + ++ A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI+M + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 +++I Sbjct: 844 SGLQQI 849 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames] gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987] gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne] gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bacillus anthracis str. A2012] gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066] gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055] gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America USA6153] gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum] gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94] gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI] gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames] gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987] gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne] gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI] Length = 823 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 823 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811 >gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] Length = 875 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E ++ Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 Query: 906 AESTE 910 ++ + Sbjct: 848 LDTID 852 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ K + + + + + I++ T G VR +S I Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+ + V + D + + Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 Query: 775 LKN 777 + Sbjct: 873 EEE 875 >gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001] gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001] Length = 920 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 466/904 (51%), Positives = 631/904 (69%), Gaps = 11/904 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE E + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++K Y K AR GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN EV+D +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 +ATGRG+++IR + IE+ DR+ I+VTEIPYQVNKA + E+IA+LVR K+I IAD+R Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP L +L+A Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W+A++++ L+ LI D + DG + L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 421 QWDAAEVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+I+ S R + +++ EL + E+ TPR T I + D +DE I MVV Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+G R +D V F TH V+FFSS G VY+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KVWRLP P A+G+AL+N+L + IT ++P P+DE W L++VFAT GNVRRN Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTE 770 R S GVRGI LA+GD+VIS+A++ H +A +ER Y++ +A+RR D Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAV 779 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + S + S + +S ER ++L++ E+ +L VS+ GFG+R+S+YD+R+S R G+GI Sbjct: 780 QPDSDEEGSDTDALLSPERFEQLEVAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNM 839 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S + A PV ++LV+D G LIRVPV+++R+ +R GV +F DER Sbjct: 840 TFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDER 899 Query: 891 VVSV 894 V SV Sbjct: 900 VTSV 903 >gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B] gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] Length = 823 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440] gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440] Length = 923 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 405/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGSQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V E+ SR T+GV + A DE +V +ERI+E + E E Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 15/247 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+RI +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + D + + + + EE Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIETDEEGVEAVAPDNENEEAAG 916 Query: 775 LKNDSSV 781 Sbjct: 917 ADEAPQE 923 >gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu] Length = 851 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 386/904 (42%), Positives = 557/904 (61%), Gaps = 77/904 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F+A R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLAHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDILS R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHSG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M + Sbjct: 717 MQLEDGQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+E D Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEDGD-G 841 Query: 907 ESTE 910 E+ E Sbjct: 842 EADE 845 >gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] Length = 867 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 ++++ Sbjct: 844 SGLQQV 849 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6] gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6] Length = 867 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 383/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 ++++ Sbjct: 844 SGLQQV 849 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] Length = 871 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 404/910 (44%), Positives = 562/910 (61%), Gaps = 70/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL KDTVD+ NYDG+ Q PVVL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMSKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+ C+A+I++ DI +D LM + GPDFPTGA+I GR GI AY TGRG I + Sbjct: 183 PPHNLREVVNACLALINDSDITIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242 Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + I R+ I++ EIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G R Sbjct: 243 RAKAEVITDEKTGRDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL++G DV+LN LY TSLQ++F +NMVAL +P L IL+AF+ R EVV Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT YLL KAR+R HVL GLAIA+AN+D V+ +++ SP+P AR L+ +SW ++ Sbjct: 363 TRRTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTS 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + DG LS Q +AIL+LRL RLTGL + + E Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IEI + +DIL RLL +I++EL + E RRT I + D+ ED I ED VVT Sbjct: 483 IEIADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PL+ Y+ QRRGG G++ + ++DEDFV L I +TH ++L FS+ G VY Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWI 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+++P+ +RG+ ++N+L L++GER+T+I+P E ++ ++ AT +G V++ Sbjct: 603 KVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEE---HTDDRFIFMATANGYVKKTD 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ F +G A+ L D ++ D++L + G+ RF SA+R GR S Sbjct: 660 LASF-APRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPM-GRAS 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI+LA+G ++IS+ + Sbjct: 718 RGVRGINLAEGHRMISLLV----------------------------------------- 736 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +LTVSE G+GKRT+ DF R GKG+ A S+ N G L Sbjct: 737 ------------PDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN--GRL 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V D+++L+S++GTL+R +++ R T+GV I T + E +V ERI ESE Sbjct: 783 VGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRAERIVESE 842 Query: 902 IV-DEAESTE 910 + E+TE Sbjct: 843 ASLESPEATE 852 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 64/447 (14%), Positives = 149/447 (33%), Gaps = 28/447 (6%) Query: 341 MVALNGYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399 L+ + + R + + LL + +D+ + L + + + Sbjct: 440 FYGLHDGEYRLSPTQAQAILDLRLHRLTGLEH--EKLLKEYQDKLIEIADLMDILQDPER 497 Query: 400 VVRIIRFSP---NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456 ++ +IR E + + D+ + + S G ++ Sbjct: 498 LLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSHGGYAKTQPLAEY 557 Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516 ++ R + + L I + S + IK + V R Sbjct: 558 QVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWIKVYQIPVAGRASRGR 617 Query: 517 ------RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570 + E + + + + + + GYVK+ L+ + + G + Sbjct: 618 PMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYVKKTDLASFAPRSAGLRAIVLG- 676 Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630 D+D + I V+ FSS G + + +RG + ++L +G R+ Sbjct: 677 --DDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMGRASRG---VRGINLAEGHRM 731 Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSV 687 +++ V+ +++G +R + DF R GK + + S ++ Sbjct: 732 ISLL------VPDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRNGRLVGA 785 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++++L + G VR + GRN+ GVR I +G+ ++ ++ ++A Sbjct: 786 LQVFSGDELMLISNQGTLVRTQCDQVSQL-GRNTQGVRIIRTKEGETLVRAERIVESEAS 844 Query: 748 YDERICYMKHMSAQRRLISGDTEEITS 774 + + + +G+ E Sbjct: 845 LESPEATEGSAATEGTEGAGNIEGGEG 871 >gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160] gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160] Length = 860 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 384/903 (42%), Positives = 555/903 (61%), Gaps = 76/903 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + +I+ +P P A++ELM R+W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E E Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEN 842 Query: 907 EST 909 +S Sbjct: 843 DSD 845 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 14/238 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R KG V + + D++ I V+ F Sbjct: 633 FSADKFVFMATALGTVKKTPLEAF--SRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLF 690 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + L G+ + ++ + V+ AT Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ E I+L T G +R Sbjct: 743 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTR 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S IR GR + GV ISL +G ++ + V A+ + + Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEGESENDSDGSAEGDNGGESGGA 859 >gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 920 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 368/920 (40%), Positives = 552/920 (60%), Gaps = 28/920 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSVERIRESEIVDEAES 908 E +VS+ER+ + + E Sbjct: 885 ETLVSLERVAKEPEDESNED 904 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 106/273 (38%), Gaps = 40/273 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ S ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTSGSDDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E++ ++L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GVR I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +S+ V D + + S D Sbjct: 888 VSLERVAKEPEDESNEDLQDTGTEVGQEIPSDD 920 >gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] Length = 822 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] Length = 823 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] Length = 823 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas] gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas] Length = 898 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 439/900 (48%), Positives = 635/900 (70%), Gaps = 5/900 (0%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Sbjct: 2 SDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RY Sbjct: 62 YKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL KAAHFLL+D+ +DTVDFRPNYD + EPVVL A +PN+LVNG GG+AVGM+TNI Sbjct: 122 TEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P+HNLGEV+D C+A IDNP+I D L+ I+RGPDFPTG ILG GI++A+ TG+G+I+I Sbjct: 182 PSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIII 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +G +H+E ++ I++ EIPYQVNKA ++E+I EL++EK+I I DLRDES++ G RV Sbjct: 242 QGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IELK+ S VILNQ+ T L++ FS+N + L+ KP+ +L I+ FV +R+EV+ Sbjct: 302 AIELKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKD 429 RRT++ L K R+RAH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + +++ Sbjct: 362 RRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVRE 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +I+L+ DS I D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ + Sbjct: 422 MIELVADSKS-IVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE 480 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L ++ LL +IK +K +L PRRT I + + ED I +EDMVVTV+ GY+K Sbjct: 481 LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIK 540 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R LS YRAQ+RGGKGR G +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G Sbjct: 541 RAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLG 600 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 P +RG++L+NI L++ E IT++MP P++ L +VFAT GN+RRN LSDF + Sbjct: 601 EPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVP 660 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIAM LD+ D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L Sbjct: 661 SNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL 720 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D VISM+++L D D +++ Y+K + +R+ + + + + ++ Sbjct: 721 SSDDNVISMSVLLAMDIDSEKKDLYLK-VPLDKRMCVKEEGVVNGGIAKILCDLGLEQDI 779 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + EQFILTV+E GFGKRTS+Y++R + R G G+ + N G +VA FPV Sbjct: 780 FVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARN--GNVVASFPVES 837 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ND I+L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV +I +++ + + Sbjct: 838 NDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDIDGN 897 >gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] Length = 822 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 554/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL+ VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELIEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 823 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273] gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273] Length = 823 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 845 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 396/901 (43%), Positives = 567/901 (62%), Gaps = 62/901 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K VS+ EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +M +WNK Sbjct: 3 EFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R LI+GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH +L DL K+TVDF PNYD EP+V+ AR PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ C+A++D+P+ + L ++ PDFPT I GR G AY TGRG +V+ Sbjct: 183 PPHNLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVM 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R E +R+ I+VTE+PYQVNKA ++E+IAE+V+EKR+ I+DLRDESD+ G R Sbjct: 243 RARCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELKR A+ADV+LN LY++T +QS+F++NMVAL P L +L+AF+ R EVV Sbjct: 303 IAIELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH+L GLA+A+ NLD ++ +IR + +P A+ +++ +SW + Sbjct: 363 TRRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAA 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ + S + +DG +LSE+Q +AIL+LRL RLTGL +D IR+E +L I+E L+ Sbjct: 423 LLVERGEPSEGMHADG-YHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLE 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S++RL+ +I++EL++++D+ RR+ IV D+ ED I E+MVVT +H GY+K Sbjct: 482 ILGSKTRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 P++V+ AQRRGGKG+ ++EDFV +F STH LFFS+LG V+ +KV++LP Sbjct: 542 AQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQA 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+GK ++N+LSL ERIT ++P + +V T G V++ + ++ + Sbjct: 602 GRGAKGKPIVNMLSLAPTERITAVLPVRDFT---EGQFVCMVTSLGVVKKTPVMEYSRPR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD D +++V + + +L T+ G VRFP + +R GRN+ GVRGISL Sbjct: 659 SQGINAINLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAM-GRNARGVRGISL 717 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+VIS V + Sbjct: 718 EENDRVISAQWVDSS--------------------------------------------- 732 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILT + G+GK T ++R +NR GKG+ A ++ N G +V V + Sbjct: 733 --------QVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERN--GDVVGALAVTE 782 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 D+++LVSD GTLIR+ VN IR R +GV + + + E++ + I +++ +E E T Sbjct: 783 RDELMLVSDHGTLIRIAVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD-EEEGEQT 841 Query: 910 E 910 + Sbjct: 842 D 842 >gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] Length = 901 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 470/891 (52%), Positives = 622/891 (69%), Gaps = 21/891 (2%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E G++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G + Sbjct: 2 QPSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A+I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ R Sbjct: 62 PYKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL+DL KDTVDF+PNYD S +EP VL AR+PN+LVNG GGIAVGMATN Sbjct: 122 YTEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D +A+IDNP I L+ LM I+ GPDFPTGA++LG+ G ++AYATGRGSI+ Sbjct: 182 IPPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMMLGQGGARSAYATGRGSIM 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ DR+ IV+T IP+QV K+ ++EKIAE R+KRI +AD+RDES+R+G R Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+A+V+LNQL+R+T QS F NM+A+ G +PE L IL AF+ FREEV+ Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPANMLAIRGGRPEMMGLKDILSAFIIFREEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L KARDRAH+L+GL +AV+NLDEVVRIIR S +P AR L+ R W DI Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 I L++ + T LSEVQ +AIL+LRL RLT LGRD+I EL L EI+E L Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R +L G++++EL++V+DE TPRRT + ++DED I RE+MVVTV+ GY+K Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PL+ +RAQRRGGKGR+G+ +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G Sbjct: 542 RTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPEG 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 P RG+ +IN+L L QGE I+T++P PEDES W L+V+FAT G+VRRN + F + Sbjct: 602 GPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNVP 661 Query: 670 RSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +GKIAMK D D ++ V + +D+LL T+ G+ +RF +R F RNS GVRG Sbjct: 662 SNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRG 721 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + LA+GD+VIS++I+ DER Y++ + D+ E + Sbjct: 722 MRLAEGDEVISLSILHRVGTTGDEREAYLRAAPWK----------------DNENEPTLP 765 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ER EL +EQFILTV G+GK +S+Y++R + R G+GI D N G +VA FP Sbjct: 766 AERMAELAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARN--GPVVASFP 823 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 Q++LV+D+ LIR+ ++ +RI R + GV +F A+ E VVS I Sbjct: 824 ATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFDVAEGEHVVSAALI 874 Score = 42.1 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTK 701 +++ +G + + ++ + R G+ +D+ V TQ + ++L T Sbjct: 776 EQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGPVVASFPATQAHQLMLVTD 835 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 + +R + ++R+ GR S GVR +A+G+ V+S A++ D D D+ Sbjct: 836 QAKLIRMGLDSLRII-GRGSAGVRLFDVAEGEHVVSAALIEDGDEDADDGRDVEVASDNP 894 Query: 762 RRLISGD 768 + Sbjct: 895 VSEAPTE 901 >gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] Length = 867 Score = 913 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C +++N D +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLNNADATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++ Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 D++ + + ++ + +DG LS+ Q + IL++RL RLTGL +D Sbjct: 422 DMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + +V A Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G QVI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EQ +LT +E G+GKRT ++ R KG+ A Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 ++++ Sbjct: 844 SGLQQV 849 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] Length = 922 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 398/942 (42%), Positives = 553/942 (58%), Gaps = 108/942 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A++DN ++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYV 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R +E R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T +QS+F +N+VAL +P+ L +L+ FV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVE 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG YLS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL++ RL+ +I++EL VK E RRT I+ D+ D I E+ VV Sbjct: 483 LALIGELIRILTNPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y AQRRGGKG+S ++DED+V L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------------- 644 + + +P S ARG+ L+N+L L++GERIT ++ + + Sbjct: 603 LRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIEG 662 Query: 645 --------------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 ++ AT G V++ L F + +G IA+KL Sbjct: 663 EATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKL 722 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 + D +++ +++L + G+ +RF S +R GR + GVRG+ L K Q+ISM Sbjct: 723 EEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQQLISM 781 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I Sbjct: 782 LI-----------------------------------------------------PESGA 788 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILT SE+GFGKRT F R G+G+ A S+ N G LV V D ++I+L+SD Sbjct: 789 QILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISD 846 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +GTL+R V+E+ + R T+GV + AKDE +V +ER++E Sbjct: 847 QGTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQEP 888 Score = 61.0 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ PL + R G + + + D + I V+ FS G V + Sbjct: 696 TAFGTVKKTPLVQFSRPRSAG--LIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFA 753 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++ ARG + + L + +++ +++ + ++ A++ G +R L Sbjct: 754 ESKVRTMGRTARG---VRGMRLGKDQQLISML------IPESGAQILTASERGFGKRTGL 804 Query: 663 SDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 F + R G+ + + + +++ +I+L + G VR + + +GR Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSS-SGR 863 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 N+ GV I LAK + ++ + V ++ + + + + + Sbjct: 864 NTQGVTLIKLAKDETLVGLERVQEPTPVEEDELVEGEEGAEVAENADAPVADAEEGSEE 922 >gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] Length = 823 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 377/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4] gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603] gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4] gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603] Length = 823 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 377/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] Length = 921 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 401/947 (42%), Positives = 559/947 (59%), Gaps = 106/947 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDADDTVLE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQQIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V++ ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVHEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 TL+R V E+ SR T+GV + A DE +V +ERI+E + + Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDD 893 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 12/179 (6%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L + + + + R + + + ++ +E+ + Sbjct: 482 ILEQIGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERV 541 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S G+ K ++ R GKG AT V + I L N + ++L S KG Sbjct: 542 VTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHL---LVANSHATLLLFSSKG 598 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRES------EIVDEAESTE 910 + EI ASRA +G V + + ER+ ++ ++ ++ +E E + Sbjct: 599 KVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDAD 657 Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 92/245 (37%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G++I +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQQIISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVHEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + D + + + + D Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDDMVEAGEEGVEAEVPDNDEAAGAE 916 Query: 775 LKNDS 779 Sbjct: 917 EAPQE 921 >gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] Length = 903 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 397/905 (43%), Positives = 561/905 (61%), Gaps = 42/905 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EIK Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ E++I+L +K G+ VRF + Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 D + ++ + + T+ + Sbjct: 714 --------------------LDENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + +LTV+E G+GKRT ++ R +G+ + VS+ N G++V Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D D+ ++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E E D Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETDL 871 Query: 906 AESTE 910 E E Sbjct: 872 PEGEE 876 Score = 58.3 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692 N+ V+ T++G +R LS++ R + + + ++ Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++ ++ T G VR ++ + GRN+ GV I A+ + V+ + + + Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETDLPEG 874 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSV 781 A + + + Sbjct: 875 EEADATEATEQAPQAQDPQADNDDAADQE 903 >gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48] gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas entomophila L48] Length = 920 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 404/950 (42%), Positives = 556/950 (58%), Gaps = 106/950 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGLINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDGRPRLLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S +G YLS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I++ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 LKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GELVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GR + GVRG+ L KG ++ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQRIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLTGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R V E+ R T+GV + A DE +V VER++E + E E Sbjct: 847 TLVRTRVGEVSSLGRNTQGVTLIKLAADETLVGVERVQEPSEEELDELIE 896 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 15/244 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G+RI +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRTARG---VRGMKLGKGQRIISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINR--SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G IAM R+ +L+ + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I LA + ++ + V + + + A + D Sbjct: 858 SL-GRNTQGVTLIKLAADETLVGVERVQEPSEEELDELIETDEEGAPLDAVGEDNAGAEE 916 Query: 775 LKND 778 + Sbjct: 917 APQE 920 >gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] Length = 860 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 385/903 (42%), Positives = 556/903 (61%), Gaps = 76/903 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + +I+ +P P A++ELM RSW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II +EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E E Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEI 842 Query: 907 EST 909 +S Sbjct: 843 DSD 845 >gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] Length = 914 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 479/918 (52%), Positives = 630/918 (68%), Gaps = 16/918 (1%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + + E+E SV+I E++ SYL YA++VI+ RAIPDLRDGLKPVH Sbjct: 1 MNDTPETPENEDEMPPMRPAYDGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRI++ M + G+ +K Y K A+ G+VMG YHPHG++AIYDAL RMAQD+S+ L L++G Sbjct: 61 RRIIYSMYEKGITADKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS+DGD AA RYTE RL K A +L DDL KDTVDF NYDG +EP VL ARYPN Sbjct: 121 QGNFGSMDGDGAAAMRYTESRLDKVAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GGIAVGMATNIP HNLGEV+D +A+ID+PD+ ++ ++E I PDFPTG +ILG Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIILG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 RTG + AY GRGS+++R +++E+ DR IV+ EIPYQVNKA M++KIAE REK+I Sbjct: 241 RTGARKAYIEGRGSVIVRAKTNVEEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKI 300 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ T Sbjct: 301 EGIAHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L L F+ FRE+VV RRT + L KAR+RAHVL GLA+AV N+DE+V IR S + TA Sbjct: 361 LRAFLAYFIDFREDVVARRTAFELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R +LM R W A DI + I LIDD ++T DGT LSE Q RAILELRL RLT +G ++ Sbjct: 421 REKLMTRKWPAQDILEYIKLIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL L +I+E L+IL SR R++ II+ EL V+D PRRT IV+ DMEDED I Sbjct: 481 TDELQELAGKIREYLEILGSRERIMQIIRDELTEVRDLFAVPRRTEIVDWSGDMEDEDLI 540 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +EDMVVTV+ GY+KR L+ +RAQRRGGKG S + ++ED VT LF+ +THT +LFF+ Sbjct: 541 EKEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VYK K WRLP+GS A+GKA++NIL + G I IMP E W++L VVFAT Sbjct: 601 TDGMVYKLKTWRLPLGSRTAKGKAIVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATS 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710 G VRRNKLSDF + R+GKIAMK + +++ + ++D++L T G+ +RFP Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPA 720 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +RVF R+SVGVRGI L D+V+SM+I+ H A+ +ER Y+K RR ++G + Sbjct: 721 TDVRVFNSRSSVGVRGIKLQGDDKVVSMSIIRHFKAEAEERAAYLK----MRRAMAGLAD 776 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + + +V G IS+ER E+ E ILT++ +G GK +SS+D+ + R G G+ A Sbjct: 777 DAETDDEEEAVAGAISQERYAEMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAM 836 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 D K GALV FPV +DQI+LV+ G IRVP+ I SR GV +F T K E Sbjct: 837 D--KAMRGGALVTSFPVEISDQIMLVTSTGQSIRVPIEGISFRSRGAGGVKVFDTGKGET 894 Query: 891 VVSVERIRESEIVDEAES 908 VVSV I + +E Sbjct: 895 VVSVAWIADQGDAEEDAD 912 >gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA] gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA] gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400] Length = 857 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 388/890 (43%), Positives = 552/890 (62%), Gaps = 58/890 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Sbjct: 3 EQSLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+AA YD + RMAQD+SLR L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+++ AH LL+DL K+TVD PNYDGS EP+VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G +A I+NP+I + L+ +I GPDFPTG I GR GI Y TGRG + + Sbjct: 183 PPHNLTEVINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242 Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + IE +R+ I+VTEIPYQVNKA ++ KIAELVREK++ I+D+RDESDR G R Sbjct: 243 RARASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+LKR + VILN LY+ T +Q+ F +NM+A+ +P TL + F+ R E+V Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L G IA+ LD V+ +IR S P A+ LM ++ + Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLR 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L + + L+EVQ + IL LRL RLTGL RD I E + + I + Sbjct: 423 KMGL-PLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKE 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S + +L II EL +K++ RRT IV+ ++ ED IV ED+VVTVSH GY+K Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +S YR+QRRGGKG++G+ ++EDFV LF+ S+ +LFF+ G VY+ KV+ +P G Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 RGKA++N+L+L + E+IT I+ + ++ ++ AT+ G V+++ L ++ I Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSVKGFD---DDRNIIMATRLGVVKKSPLREYANIR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G IA+ LD D++++V D+LL +K G+ +RF R GR S GVRG+SL Sbjct: 659 SGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPM-GRVSRGVRGMSL 717 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D VI M I+ Sbjct: 718 EDDDVVIGMEIINPN--------------------------------------------- 732 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 I TV+E GFGKRT ++R+ +R GKGI ++ N G +V + V D Sbjct: 733 -----ATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + ++L++D+G ++R+PV + + R T+GV + + ++ER+V+V ++ E Sbjct: 786 ENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAE 835 Score = 94.9 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A E + + + +E + + + +E ++ ++E + Sbjct: 472 ILKYIARLKEILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVV 531 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +TVS G+ KRT+ +R R GKG + + + L F + D ++ +D G Sbjct: 532 VTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHL---FVASSKDFMLFFTDAG 588 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + ++ V EI RAT+G V + + ++E++ ++ ++ + Sbjct: 589 KVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDD 634 >gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7] Length = 864 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 393/904 (43%), Positives = 547/904 (60%), Gaps = 79/904 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K AH LL Sbjct: 61 YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV++GC+ Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR- 263 + NPD ++ L+E+I PDFPTG +I G +G++ Y TGRG +++R +H E Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 + I+V +PYQVNK + EKIA+LV +KRI I+D+RDESD+ G R+VIELKRG +VI Sbjct: 241 QAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVI 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P L I++ F+ R EVV RRT + L KAR+R Sbjct: 301 LNNLYKNTQLQDTFGMNMVALVDGQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436 HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ DD Sbjct: 361 GHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPGGR 420 Query: 437 ---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + + DG LSEVQ + IL +RL RLTGL +D I E + I + Sbjct: 421 AAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADL 480 Query: 488 LDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 LDIL+ R+ II ELL++K E RR+ I +++ ED I DMVVT+S Sbjct: 481 LDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTLS 540 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+K PLS YRAQ+RGG+G+ M++ D+V LFI +TH +L FS G VY KV Sbjct: 541 QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWLKV 600 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 W +P GS +RG+ ++N+ L E+IT ++P E + YV AT G V++ LS Sbjct: 601 WEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFS---EDHYVFMATSRGTVKKTPLS 657 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF ++G IA+ LD D ++ + +D++L + G+ VRF + +R GR + G Sbjct: 658 DFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPM-GRTARG 716 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L +G VI+M + Sbjct: 717 VRGMMLEEGQVVIAMLV------------------------------------------- 733 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + Q +LT +E GFGKRTS ++ R KG+ A S N G +V Sbjct: 734 ---------AGDETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARN--GKVVG 782 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V +D+I+L++ G L+R V+EIR RAT+GV + S + + V R+ ES+ Sbjct: 783 AVLVRPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDNSMLSGVRRVVESDAD 842 Query: 904 DEAE 907 D+ E Sbjct: 843 DDVE 846 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 72/398 (18%), Positives = 132/398 (33%), Gaps = 31/398 (7%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + S+I+ +D D + L Sbjct: 480 LLDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTL 539 Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 S QT I L+ R + + + L I ++ LL + + Sbjct: 540 S--QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYW 597 Query: 509 KDEL------DTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLS 554 R IV ++DE + V + G VK+ PLS Sbjct: 598 LKVWEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 657 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R+ G V + D DF+ + V+ FS G + + AR Sbjct: 658 DFSNPRKAG--IIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPMGRTAR 715 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + + + + V+ AT++G +R + ++ + R K Sbjct: 716 GVRGMML--------EEGQVVIAMLVAGDETQSVLTATENGFGKRTSIVEYTRHGRGTKG 767 Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 + + +++ ++I+L T G VR +S IR GR + GV IS+ Sbjct: 768 MIAIQTSARNGKVVGAVLVRPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLISVDD 826 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + V+ +DAD D + + ++ Sbjct: 827 NSMLSGVRRVVESDADDDVEVLIDNVDEVVDDVDDKES 864 >gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271] gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271] Length = 823 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] Length = 922 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 401/942 (42%), Positives = 553/942 (58%), Gaps = 108/942 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DGC+A+IDN D+ +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R +E R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG DV+LN LY T +QS+F +N+VAL +P+ L +L+ FV R EV Sbjct: 303 RVVIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVE 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S +G YLS Q +AILELRL RLTGL + + E + Sbjct: 423 AMVERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E + IL+S RL+ +I++EL VK E RRT I+ D+ D I E+ VV Sbjct: 483 LSLIGELIRILTSPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y AQRRGGKG+S ++DED+V L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------------- 644 + + +P S ARG+ L+N+L L++GERIT ++ + + Sbjct: 603 LRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIEG 662 Query: 645 --------------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 ++ AT G V++ L F + +G IA+KL Sbjct: 663 EATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKL 722 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 + D +++ +++L + G+ +RF S +R GR + GVRG+ L K ++ISM Sbjct: 723 EEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQRLISM 781 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I Sbjct: 782 LI-----------------------------------------------------PESGA 788 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILT SE+GFGKRT F R G+G+ A S+ N G LV V D ++I+L+SD Sbjct: 789 QILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISD 846 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +GTL+R V+E+ + R T+GV + AKDE +V +ER++E Sbjct: 847 QGTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQEP 888 Score = 61.0 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ PL + R G + + + D + I V+ FS G V + Sbjct: 696 TAFGTVKKTPLVQFSRPRSAG--LIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFA 753 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++ ARG + + L + +R+ +++ + ++ A++ G +R L Sbjct: 754 ESKVRTMGRTARG---VRGMRLGKDQRLISML------IPESGAQILTASERGFGKRTGL 804 Query: 663 SDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 F + R G+ + + + +++ +I+L + G VR + + +GR Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSS-SGR 863 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 N+ GV I LAK + ++ + V ++ + + + + + Sbjct: 864 NTQGVTLIKLAKDETLVGLERVQEPTPVEEDELLEGEEGAEVADSADAPIVDAEEGSEE 922 >gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49] Length = 851 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 387/904 (42%), Positives = 557/904 (61%), Gaps = 77/904 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI++ + Sbjct: 717 MQLEDGQQVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+E D Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEEGD-G 841 Query: 907 ESTE 910 E+ E Sbjct: 842 EADE 845 >gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003] gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003] Length = 862 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 384/903 (42%), Positives = 553/903 (61%), Gaps = 76/903 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NPD +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E + Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDL 842 Query: 907 EST 909 E Sbjct: 843 EGD 845 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 14/240 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R KG V + D D++ I V+ F Sbjct: 633 FSADKFVFMATALGTVKKTPLEAF--SRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 690 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + L G+ + ++ + V+ AT Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++++ + R G IA++ ++++ E I+L T G +R Sbjct: 743 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTR 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV ISL +G ++ + V A+A+ D + G Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDLEGDAEGPAESGNGGEDGGA 861 >gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3] gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3] Length = 823 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619] gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619] Length = 923 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 407/947 (42%), Positives = 558/947 (58%), Gaps = 106/947 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S IE R+QIVVTE+PYQ+NKA ++EKIAELV++K+I I +LRDESD+ G Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDGRPRVLNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P AR L+ +W +S ++ Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQ 422 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ S DG YLS Q +AIL+LRL RLTGL + + E + Sbjct: 423 VMVERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VV Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636 +K + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIE 662 Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 PE + Y+ AT G V++ L F + +G IA+KL Sbjct: 663 GEVVEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ ++++ + G+ +RF S +R GR + GVRG+ L KG Q+ISM I Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQQIISMLI 781 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I Sbjct: 782 -----------------------------------------------------PESGAQI 788 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+G Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 TL+R V E+ SR T+GV + A DE +V +ERI+E + E Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEEELDE 893 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 93/247 (37%), Gaps = 15/247 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + +++ D + I V+ FS G Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + ARG + + L +G++I +++ + ++ A++ G Sbjct: 747 VIRFAESVVREMGRTARG---VRGMKLGKGQQIISML------IPESGAQILTASERGFG 797 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R LS F + R G+ + + ++ + + +I+L + G VR + + Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 + RN+ GV I LA + ++ + + + + + + ++ Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEEELDELVGADEEGVELDAPEAADDDNAG 916 Query: 775 LKNDSSV 781 + Sbjct: 917 AEEAPQE 923 >gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001] gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001] Length = 862 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 384/903 (42%), Positives = 553/903 (61%), Gaps = 76/903 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E + Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDV 842 Query: 907 EST 909 E Sbjct: 843 EGD 845 >gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli] Length = 878 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 404/908 (44%), Positives = 578/908 (63%), Gaps = 71/908 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVR Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+V+S+ + A Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT ++ G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787 Query: 846 PVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V+D DQ I++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVDDCDQIMMIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 847 Query: 903 VDEAESTE 910 ++ ++ + Sbjct: 848 EEDLDTID 855 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 18/246 (7%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R GK +V DE DL S V+ FS+ G Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + + + L +G+++ +++ + ++ AT++G Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753 Query: 658 RRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPIS 711 +R ++++ +R G I++K+ R+ ++ + D I++ T G VR +S Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIMMITDAGTLVRTRVS 813 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 I GRN+ GV I A+ + V+ + V + D + + Sbjct: 814 EI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVD 872 Query: 772 ITSLKN 777 + Sbjct: 873 DEPEEE 878 >gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901] gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901] Length = 856 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 404/909 (44%), Positives = 553/909 (60%), Gaps = 71/909 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK +H LL DL K+TVDF PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+ +I+NP +D L+E I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 186 NLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGIINGRAGILMAYRTGRGRIYVRAK 245 Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + + +R+ I++ EIPYQVNKA ++EKIAELV++K+I I+++RDESD+ G RVVI Sbjct: 246 AEVVTDEKTNRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG DV+LN LY T LQS+F +N+VAL +P+ L +L+ F++ R EVV RR Sbjct: 306 EIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQPKVLNLKQMLEHFISHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R HVL GLA+A+AN+DEV+ +I+ S P AR L+ R W + I ++ Sbjct: 366 TVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTISQFLE 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + DG +LS Q +AILELRL RLTG+ D + E +I Sbjct: 426 RAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEKLQQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L+ILS+ RL+ +I++EL +V E RRT I D+ ED I ED VVT+SH Sbjct: 486 SEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVVTISH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL Y+AQRRGG G++ ++DEDFV L I +TH +L F++ G V+ KV+ Sbjct: 546 GGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ Q+RG+ ++N+L L +GERIT+I+P E + + ++V AT G V++ LS Sbjct: 606 QIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFD---EDRFIVMATSQGTVKKTPLSQ 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G A+ L D ++ + DI+L + G+ RF +R GR S GV Sbjct: 663 FARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSM-GRTSRGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI +A +VI+M I Sbjct: 722 RGIRMADEHRVIAMVIPADGGK-------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +LTVSE G+GKRT DF R +G+ A VS+ N G LV Sbjct: 744 ---------------VLTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERN--GGLVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SE 901 + D D+++++SD+GTL+R +E+ + SR T+GV + + E +V V RI E + Sbjct: 787 VQIFDGDELMMISDQGTLVRTRGDEVSLLSRNTQGVRLIKVRESEHIVGVARIAEQLDQD 846 Query: 902 IVDEAESTE 910 DE ES E Sbjct: 847 ADDETESNE 855 >gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 930 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 465/900 (51%), Positives = 630/900 (70%), Gaps = 10/900 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 1 MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA Sbjct: 61 GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + FLLDD+ +DTVDF+PNYD S EP VL A +PN+LVNG GIAVGMATNIPTHN GEV Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R + IE+ Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR+ I++TEIPYQVNKA + EKIA+LVR K I I+D+RDESDR G RVVIELKR A Sbjct: 241 IRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LNQLYR+T LQ+ FS NM+AL+ KP L IL+AF+ FREEV++RR ++ LN Sbjct: 301 TPDVVLNQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLN 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDR H+LVGL +AVAN+DEV+ +IR +P+ TAR LM R W+AS++ L++LI D Sbjct: 361 KARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEG 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 I DG + L+E Q R ILELRL RLTGL R+ I+ EL + +I E L I+ SR R + Sbjct: 421 NVI-IDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRM 479 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 ++++ELL+ + E+ TPR T I + L D DE I MVVT++ G++KR PL V+R+ Sbjct: 480 EVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRS 539 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG+GR+ R +D + F TH V+FFSS G Y+ KVW LP +P A+G+AL Sbjct: 540 QNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRAL 599 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L + IT ++P P+DE W +L++ FAT GNVRRN+LSDF I SG IAMKL Sbjct: 600 VNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKL 659 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVI 736 D D ++ V TC + D+ L TK +C+RF I+ +RVFAGR S GVRGI L +GD VI Sbjct: 660 DEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVI 719 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERC 790 S+ I+ H DA +ER Y++ +A+RR S + E ++ + + G++++ER Sbjct: 720 SLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERF 779 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +EL+ +E+ +LTV++ GFG+R+S+YD+R+S R G+GI S +V P D Sbjct: 780 EELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDG 839 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++LV+D G LIR+PV+++R+ SR GV +F E V+ V + E + +E ++ E Sbjct: 840 TDVMLVTDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDDT-EEGDTDE 898 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706 T G RR+ D+ R G+ + E++ D++L T G+ + Sbjct: 793 TDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRLI 852 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R P+S +RV + R + GV L + VI + VL D + + + + Sbjct: 853 RLPVSQVRVMS-RQASGVTLFRLNDTETVICVFPVLEDDTEEGDTDEGSEAGAKVIGEAG 911 >gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] Length = 857 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 387/900 (43%), Positives = 550/900 (61%), Gaps = 58/900 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Sbjct: 3 EQTLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+++ AH LL+DL K+TVD NYDGS EP+VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DG +A I NP I + L+ ++ GPDFPTG I GR GI Y TGRG + + Sbjct: 183 PPHNLSEVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242 Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + IE +R+ IVVTEIPYQVNKA ++ KIAELVREK++ I+D+RDESDR G R Sbjct: 243 RARASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+LKR + VILN LY+ T +Q+ F +NM+A+ +P+ TL + F+ R E+V Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPKVLTLQDAIGHFIDHRREIV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L G IA+ LD V+ +IR S P AR LM ++ + Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQ 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L + + L+EVQ + IL LRL RLTGL RD I E + I + Sbjct: 423 KMGL-PLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKE 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S + +L II EL +K++ RRT IV+ ++ ED IV ED+VVTVSH GY+K Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +S YR+QRRGGKG++G+ ++EDFV LF+ S+ +LFF+ G VY+ KV+ +P G Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 RGKA++N+L+L + E+IT I+ + + ++ AT+ G V+++ L ++ I Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSVKGFD---DERNILMATRLGVVKKSPLREYANIR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G IA+ LD D++++V D+LL ++ G+ +RF R GR S GVRG++L Sbjct: 659 SGGIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPM-GRVSRGVRGMTL 717 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D VI M ++ Sbjct: 718 EDDDVVIGMEVINP---------------------------------------------- 731 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 I TV+E GFGKRT ++R+ +R GKGI ++ N G +V + V D Sbjct: 732 ----SATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++L++D+G ++R+PV + R T+GV + + ++ER+V+V ++ E + DE + Sbjct: 786 ENDLMLITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDS 845 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 12/232 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E ++ + LG VK+ PL Y R GG + +ED + + + VL Sbjct: 631 FDDERNILMATRLGVVKKSPLREYANIRSGGIIAVNLD--EEDKLIAVALTDGRQDVLLA 688 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + +RG + + E ++ S + T Sbjct: 689 SRNGKSIRFHEEDARPMGRVSRGVRGMTL------EDDDVVIGMEVINPSATGSTIFTVT 742 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709 ++G +R +L ++ +R GK + + + + V T END++L T G+ +R P Sbjct: 743 ENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVVDIMQVTDENDLMLITDQGKILRIP 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ GRN+ GVR ++ + ++++++A + D + A+ Sbjct: 803 VAPF-SVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDSGDDLPEAE 853 >gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis] gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50] Length = 877 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 385/896 (42%), Positives = 542/896 (60%), Gaps = 78/896 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K AH LL Sbjct: 61 YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EVVDGC+ Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR- 263 + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG +++R +H E Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG +V+ Sbjct: 241 QAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +N+VAL +P L +++ F+ R EVV RRT + L KAR+R Sbjct: 301 LNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ +D Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGGVA 420 Query: 436 -------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 Y + DG LSE Q + IL +RL RLTGL +D I E + I + L Sbjct: 421 AFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLL 480 Query: 489 DILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 DIL+ R+ II +EL ++K E RR I +++ ED I DMVVT+SH Sbjct: 481 DILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSH 540 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH +L FS+ G VY KVW Sbjct: 541 GGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVW 600 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P G+ +RGK ++N+ L GE++T ++P E + YV AT G V++ LSD Sbjct: 601 EVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVFMATSRGTVKKTPLSD 657 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R GRN+ GV Sbjct: 658 FSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPM-GRNARGV 716 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L +G VI++ + Sbjct: 717 RGMMLEEGQTVIALLV-------------------------------------------- 732 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + Q +LT +E G+GKRT ++ R KG+ A S N G +V Sbjct: 733 --------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRN--GRVVGA 782 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V +D+I+L++ G L+R V EIR RAT+GV + S + V R+ ES Sbjct: 783 VLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVES 838 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D++I MA + +S + + I + Sbjct: 452 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDT 511 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +E N +E ++L ++T+S G+ K ++R R G+G +AT + + + Sbjct: 512 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 571 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893 + L F N +D ++ S++G + + V E+ +R ++G I + A E+V Sbjct: 572 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 628 Query: 894 VERIRESEIV 903 V ++E Sbjct: 629 VLPVKEFSED 638 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 135/410 (32%), Gaps = 27/410 (6%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A + + II A + ++I+ +D D + L Sbjct: 479 LLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 538 Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 S + Q + + G ++ + I D L S + + Sbjct: 539 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 598 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556 + V R IV + E + V + G VK+ PLS + Sbjct: 599 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 658 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+ G + D D++ + V+ FS G + + ARG Sbjct: 659 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 715 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + + L +G+ + ++ + V+ AT++G +R ++++ + R K + Sbjct: 716 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 768 Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + ++ ++I+L T G VR ++ IR GR + GV IS+ G Sbjct: 769 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 827 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + + V+ +DAD D+ DT + Sbjct: 828 SLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSEPTEPTE 877 >gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] Length = 918 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 369/921 (40%), Positives = 551/921 (59%), Gaps = 28/921 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I + + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEVSDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIVDEAEST 909 E +VS+ER+ E E E Sbjct: 885 ETLVSLERVAEDESESELSDA 905 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 104/271 (38%), Gaps = 40/271 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEVSDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +S+ V +++ + + + + Sbjct: 888 VSLERVAEDESESELSDASVISSVTEPEAEN 918 >gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65] gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65] Length = 868 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 388/907 (42%), Positives = 552/907 (60%), Gaps = 68/907 (7%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 K I V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L M + +WNK Y Sbjct: 5 SKEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YD + RMAQ +++R L++GQGNFGS+DGD AA RYTE Sbjct: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH +L D+ K+TV+F NYDG+ Q P VL R P++LVNG GIAVGMATNIP Sbjct: 125 VRMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+ GC+A+I+NP+ID+D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 185 HNLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAALINGRDGIVDAYRTGRGRIQMRA 244 Query: 253 VSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H E +E I+ TEIPYQVNKA ++EKIAELV++K+I I +LRDESD+ G R+V Sbjct: 245 RHHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +EL+RG +V+LN L+ T LQ++F +N VAL +P+ L +L+AFV R EVV R Sbjct: 305 VELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQPKILNLKDMLEAFVRHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L GLA+A+AN+D V+ I+ SP A+ +L+ +W D+ +++ Sbjct: 365 RTIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEML 424 Query: 432 DLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + DG YLS Q +AIL++RL +LTGL D + +E E Sbjct: 425 ERAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDE 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S RL+ +I++EL S+KDE R T IVE + ED I EDMVVT+S Sbjct: 485 IAEYLQILASHERLMEVIREELESIKDEYGDGRLTEIVETRRHLTMEDLIAEEDMVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K P++ Y+AQRRGG+G+S ++DEDF+ L + +TH ++L FS+ G VY KV Sbjct: 545 HGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P+ S Q+RG+ ++N+L L Q E ITTI+P E Y+ AT G V++ L+ Sbjct: 605 YDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYT---EGHYIFMATSKGTVKKTDLT 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA++L+ D ++ E D+LL + +G+ VRF S +R GR + G Sbjct: 662 AFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAM-GRTARG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI + +V+S+ I Sbjct: 721 VRGIKMQDDQKVVSLMI------------------------------------------- 737 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +LT SE G+GKRT +F R +G+ + N G LV Sbjct: 738 ----------PKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRN--GKLVG 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D ++I+L++++GTL+R V+E+ R T+GV + + ER+V + I + + Sbjct: 786 AVQVFDGNEIMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGERLVGIAPIMDEDED 845 Query: 904 DEAESTE 910 ++ E Sbjct: 846 MDSVVNE 852 Score = 68.7 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 15/236 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ L+ + R G + D ++ + VL S +G Sbjct: 645 YIFMATSKGTVKKTDLTAFSRPRSSGLIALELEEGDTLMGAEI--TDGNQDVLLMSDVGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + ARG I + + V+ A++HG Sbjct: 703 AVRFAESNVRAMGRTARGVRGIKMQDDQK---------VVSLMIPKEGATVLTASEHGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R + +F R + + + + D +++ N+I+L T G VR +S + Sbjct: 754 KRTDVDEFPTKGRGTQGVIGMVTNDRNGKLVGAVQVFDGNEIMLITNQGTLVRTRVSEVS 813 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 GRN+ GV I + +G++++ +A ++ D D D + + + E Sbjct: 814 TL-GRNTQGVTLIRVQEGERLVGIAPIMDEDEDMDSVVNEQTLPAEDDSEEASGEE 868 >gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815] gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815] Length = 859 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 381/903 (42%), Positives = 557/903 (61%), Gaps = 76/903 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF+PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL E+VD C Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +VI Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVI 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+D+ + II+ +P P A++ELM RSW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATSGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + +Y + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL ++K E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSHSG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQSVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ +++I E+E + Sbjct: 783 VDPEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEADVDG 842 Query: 907 EST 909 ++ Sbjct: 843 DAD 845 >gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18] gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18] Length = 837 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 403/893 (45%), Positives = 559/893 (62%), Gaps = 84/893 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R++ Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG VA+I+NP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R I Sbjct: 188 EVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247 Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G RVVIELK Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + ++LN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMER--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL RLTGL RD I EL + I +IL+S + Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++ Sbjct: 462 EILKIIVGELIELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARG Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L E+IT I+P E ++ +++ AT++G V++ + ++ G IA Sbjct: 582 KAIVNLLNLAANEKITAILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D+++SV + D+LL T G+ +RF +R GR S GVRG++L + D V Sbjct: 639 VNLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRTV-GRVSRGVRGMAL-EDDVV 696 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I MAI+ D Sbjct: 697 IGMAILNEHFTDS----------------------------------------------- 709 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L Sbjct: 710 ---TIFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERN--GQVVDIKQVNDDNDLML 764 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++D+G ++RV V+ I R T+GV + ++ERVV+V R+ E E DE E Sbjct: 765 ITDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENED 817 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 93/241 (38%), Gaps = 13/241 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G VK+ + Y R GG + + D + + + VL ++ Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLISVALTDGKQDVLLATA 664 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + K + +RG ++ + + + T++ Sbjct: 665 NGKAIRFKEDDVRTVGRVSRGVRG-------MALEDDVVIGMAILNEHFTDSTIFTVTEN 717 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R ++S++ +R GK + + +++ ++ +ND++L T G+ +R +S Sbjct: 718 GYGKRTEISEYRTQSRGGKGVITIKTTERNGQVVDIKQVNDDNDLMLITDQGKILRVQVS 777 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 GRN+ GVR + + ++V+++A + + + + GD E Sbjct: 778 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENEDGSEIDEIVELEADGGDEGE 836 Query: 772 I 772 Sbjct: 837 E 837 >gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] Length = 858 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 399/910 (43%), Positives = 563/910 (61%), Gaps = 69/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH +L DL K+TVDF NYDG+ + P VL R PN+L+NG GIAVGMATNI Sbjct: 123 TEIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ EVV C+A+++NP+I +D LME I GPDFPTGA+I GR GI AY TGRG I + Sbjct: 183 PPHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIISGRAGILQAYRTGRGRIYV 242 Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + I + +R+ I++ EIPYQ+NKA ++E+IAELV+EK+I I++LRDESD+ G R Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRG DV+LN LY T LQS+F +NMVAL +P+ L I+ AF+ R EVV Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQPKVMNLKEIIDAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT YLL KAR+R H+L GLAIA+AN+D ++ +I+ SP+P AR L+ + W+ D+ Sbjct: 363 TRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVA 422 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + + DG LS Q +AILELRL RLTGL + + NE Sbjct: 423 MLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI + L IL RL +I++EL V +E R T IV+ D+ ED I ED VVT Sbjct: 483 KEIADYLHILGDSDRLKQVIREELEEVVEEFGDERLTEIVDSQHDLSVEDLITPEDRVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PLS Y+AQRRGG G+S ++DEDFV L + STH+++L F++LG VY Sbjct: 543 ISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+++P+ Q+RG+ ++N+L L+ GER+T+I+P E + Y+ AT G V++ Sbjct: 603 KVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAEYT---EDHYIFMATAKGIVKKTA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+DF + G A++L D ++ E+D++L + G+ VRF +R GR + Sbjct: 660 LTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI + D++I++ I Sbjct: 719 RGVRGIRMGDEDEMIALII----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + ++LT S G+GK+T + +F R KG+ A + N G L Sbjct: 738 ------------PQEGSYVLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRN--GPL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + D+++L+S++GT++R V+EI R T+GV + + E +V + +I ES+ Sbjct: 784 VGAVQVGEADELMLISNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESD 843 Query: 902 I-VDEAESTE 910 EAE+ E Sbjct: 844 ELPSEAEAAE 853 >gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] Length = 933 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 464/918 (50%), Positives = 634/918 (69%), Gaps = 12/918 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I D + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTE--IPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 59 RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG Sbjct: 119 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGAS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN GE++D +A+I+ PD+ LD L++ + GPDFPTG ILGR GI++A Sbjct: 179 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTILGRAGIRSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS++IR + IE+ DR I+VTEIPYQVNKA + E+IA+LVR K++ I+D+R Sbjct: 239 FETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P L +L+A Sbjct: 299 DESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLEA 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V++RR ++ LNKARDRAH+LVGL IAVAN+D V+ +IR +P+ AR LM R Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W+A+D+ L++LI D I DG ++L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 419 GWDAADVAPLLELIHDEGNVI-VDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 477 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 + I + L+I++SR R + +++ EL+S++ EL TPR T I + D DE I MVV Sbjct: 478 AVRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVV 537 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+ R +D + F TH VLFFSS G Y+ Sbjct: 538 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYR 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP SP A+G+AL+N+L + IT ++P P+DE W NL++VFAT G+VRRN Sbjct: 598 EKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 +LSDF I SG IAMKL+ D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 658 RLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----- 773 R S GVRGI LA+GD V S+ ++ H DA +ER Y++ +A+RR + +E T Sbjct: 718 RGSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITA 777 Query: 774 -SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + ++ ER EL+ E+ +L VS GFG+R+S+YD+R+S R G+GI Sbjct: 778 GDDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTF 837 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S A+VA PV + ++LV+D G LIR+P+ ++RI SR GV +F E V Sbjct: 838 SANKRGNAVVATLPVLEGTDVMLVTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEVT 897 Query: 893 SVERIRESEIVDEAESTE 910 SV + + + D E ++ Sbjct: 898 SVFPVMD-DGEDGGEDSD 914 >gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] Length = 881 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 412/914 (45%), Positives = 582/914 (63%), Gaps = 43/914 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSI-------HSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q G+ KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E T +EQI+VTE+PYQVNKA ++EKIAEL+++K+I I+++ Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV+RR+ + L KAR+R H+L GLA+A +N+DEV+ IIR S + A +L+ R Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 W ++I L+D + G YLS Q AILELRL RLTGL +++ N Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I E L I++S RL+ +I++EL V+ + RRT I D++ ED I + Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +V+ AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYE---EDKFVIMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + EE++ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDIADDESAVEIEEVSDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + +++ NI + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862 Query: 896 RIRESEIVDEAEST 909 R+ + + DE Sbjct: 863 RVCDVDDEDEGSED 876 >gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ] gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ] Length = 906 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 454/901 (50%), Positives = 635/901 (70%), Gaps = 8/901 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + +K Y Sbjct: 2 SDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGSVDGDPPA+ RYTE Sbjct: 62 KAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL +AAHFLL+D+ +DTVDFRPNYD + QEPVVL A +PNVLVNG GG+AVGM+TNIP+ Sbjct: 122 ARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D V IDNP++ L+ LM +I GPDFPTG VI+G GIK+A+ATGRG+I+I+G Sbjct: 182 HNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE+ R+ I++ EIPYQ NKA ++E+I ELV+EK+I ++DLRDES++ G RV I Sbjct: 242 KTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ ++ V+LNQL T L++ FS+N + L+ +P +LI I++ FVAFR+EV+VRR Sbjct: 302 ELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLI 431 T+Y L K R+RAH+ +G+ IAV N+DE+V IIR S + A L +R+W + +++ +I Sbjct: 362 TRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRGMI 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 +L+ D S + G L+ Q +AILE+RL RLTGL + + EL S+ I E IL Sbjct: 422 ELVSD-STGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTKIL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ S L+ ++++ LL VK + TPRRT I E D++ E I RE+MVVTV+ G+VKRV Sbjct: 481 STDSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 541 KLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESS--WNNLYVVFATKHGNVRRNKLSDFIQIN 669 +RG++L+NI L +GE IT++MP P+ ++ VVFAT GN+RRN L+DF + Sbjct: 601 ASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQYVP 660 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIAM L D+++S C + +LL++++G+ +RF + +R F GR S GVR I L Sbjct: 661 SNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKL 720 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-NISEE 788 A+GDQVISM+++ ++A + R Y+K R + E + +EG +SEE Sbjct: 721 AEGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQLSEE 780 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ KEQFILTV+E GFGKRTS+Y++R + R G G+ + N G +VA F V Sbjct: 781 TFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARN--GKVVASFSVA 838 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAE 907 DQ++L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV + +S + D+ E Sbjct: 839 HTDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALVIDSGDNCDDDE 898 Query: 908 S 908 Sbjct: 899 G 899 Score = 62.1 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDI 696 + +++ T++G +R ++ R G + + ++++ + + + Sbjct: 784 DMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARNGKVVASFSVAHTDQV 843 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L T G+ +R +S IR+ GR++ GV KG++V+S+A+V+ + + D+ Sbjct: 844 MLITDKGKLIRISVSDIRII-GRSTQGVTLFKTEKGEKVVSVALVIDSGDNCDDDEGIGG 902 Query: 757 HMSA 760 +SA Sbjct: 903 EVSA 906 >gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN] gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN] Length = 878 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 556/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R ++H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRALTHFEEIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + S+ + SDG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLSRAETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II EL S+K E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ++MVVT+SH GYVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ +INI L +GE+IT ++P E + +V Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMG 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F ++ R G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G VI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQNVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E GFGKRT ++ R KG+ A Sbjct: 747 ---------------------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 ++++ Sbjct: 844 SGLQQV 849 Score = 81.4 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++A + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L ++ ++T+S G+ K ++ R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G I + + E++ V + Sbjct: 590 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 >gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus parainfluenzae T3T1] Length = 881 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 414/915 (45%), Positives = 585/915 (63%), Gaps = 45/915 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSI-------HSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q G+ KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E T +EQI+VTE+PYQVNKA ++EKIAEL+++K+I I+++ Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV+RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S + A +L+ R Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISR 413 Query: 421 SWNAS-DIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 W + +I L+D + G YLS Q AILELRL RLTGL +++ N Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I E L I++S RL+ +I++EL V+ + RRT I D++ ED I + Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +V+ AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYE---EDKFVIMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + EE++ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDIADDESAVEIEEVSDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + +++ NI + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862 Query: 896 RIRESEIVDEAESTE 910 R+ ++ DE E TE Sbjct: 863 RVC--DVDDEDEGTE 875 >gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] Length = 839 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E E T Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815 >gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101] gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101] Length = 839 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E E T Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815 >gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4] gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4] Length = 832 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 400/905 (44%), Positives = 553/905 (61%), Gaps = 93/905 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR Sbjct: 8 VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMY 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL DL K+TV+ PNYD S QEP+VL A++PN+LVNG GIAVGMATNIP HNL Sbjct: 128 QLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLS 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG +AVI NP + + L+E+I GPDFPT I GR GI +AY TGRG I +R + I Sbjct: 188 EVIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAMI 247 Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++EKIAELVREK+I I+DLRDESDR+G R+VIELK Sbjct: 248 ETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + ++LN LY+ T +QS F + M+A+ +P TL + F+ R E+V RRT + Sbjct: 308 KDENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM R Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSR--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL RD I E + I +IL+S + Sbjct: 413 -----------FGLSEIQAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASET 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL +KD+ RRT IV ++ ED IV EDMVVT+SH GY+KR +++ Sbjct: 462 EILNIIVGELRELKDKFGDKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKG++G+ ++EDFV LFI S+ ++FF+ G VY KV+ +P RG Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L+ E+IT I+P E + +++ AT++G V++ L ++ G IA Sbjct: 582 KAIVNLLNLSTNEKITAILPVKEFT---ADKFIMMATRNGVVKKTPLLEYSHPRVGGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D++++V D+LL +K G+ +RF S +R GR S GVRG++L D V Sbjct: 639 VNLDEGDKLITVALTDGRQDVLLASKNGKSIRFKESDVRTV-GRVSRGVRGMTLEDDDVV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M I+ D Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + TV+E GFGKRT ++R +R GKG+ ++ N G +V + V D + ++L Sbjct: 711 ---TLFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERN--GCVVDIKQVTDENDLML 765 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----------SEIVDE 905 ++D+G ++RVPV I R T+GV + T +ER+V+V R+ E ++ E Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARLAEKEDEEESEETADNGPE 825 Query: 906 AESTE 910 AE+ E Sbjct: 826 AENVE 830 >gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] Length = 839 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E E T Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815 >gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] Length = 839 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E E T Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815 >gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] Length = 960 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 402/916 (43%), Positives = 570/916 (62%), Gaps = 29/916 (3%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GIT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++ C+A+I NPD+ L+ +ME I GPDFPT +I G+ GI+ AY TGRG + IR + Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGIINGKAGIEQAYRTGRGKVHIRARA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE RE IVV E+PYQVNKA ++E+IAE V++K+I I+ LRDESD+ G R+V+E+ Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q +F +NMVAL +P+ FTL +L AF+ R EVV RRT Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQPKIFTLKEMLDAFLRHRREVVTRRTV 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LAIA+AN+DE++ +I+ S A++ L+ R W D+ +++ Sbjct: 367 FELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLERA 426 Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + +G+ +L+E+Q +AIL+LRL +LTGL + I +E L I E Sbjct: 427 GDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL++ SRLL +I +EL + KD RRT I D+ ED I RED+VVT+SH G Sbjct: 487 LLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIEREDVVVTLSHEG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK P++ Y AQRRGGKG+S M++EDF+ L + +TH +L FSS G +Y KV++L Sbjct: 547 YVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRLYWMKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARGK ++N+L L GERIT I+P + E ++ +V AT +G V++ LS + Sbjct: 607 PLASRQARGKPIVNLLPLQDGERITAILPVAQFE---DDKFVFMATANGTVKKTALSAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-- 724 + G IA+ L+ DE++ V+ NDI+L + G+ VRF + V Sbjct: 664 KPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRFCEFEEIPVLDEDGNPVLE 723 Query: 725 --RGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + + +G+ V+ ++ A DE + + L + Sbjct: 724 EAKPVLDEEGNPVLDEEGNPVLEEAKPVLDEEGNPVLDEDGKPVLEEAKPKIKFKGVRPM 783 Query: 780 SVEGNISEERCQELKLK---------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 E K + ILT +E GFGKRT+ ++ +R KG+ + Sbjct: 784 GRTATGVRGIKLEEGQKVVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSI 843 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 VS+ N G +V V D D+++L+++ GTL+R +E+ + R T+GV + T +DE Sbjct: 844 KVSERN--GKVVGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDEL 901 Query: 891 VVSVERIRESEIVDEA 906 VV ++RI E E + A Sbjct: 902 VVGLQRIDEVEEDENA 917 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 4/160 (2%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692 N+ ++ AT++G +R L ++ +R K + + +++ Sbjct: 801 VVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERNGKVVGATQVLD 860 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++++L T G VR S + GRN+ GVR I + + V+ + + + D + + Sbjct: 861 GDELMLITNGGTLVRTRASEV-SMVGRNTQGVRLIRTGEDELVVGLQRIDEVEEDENAVV 919 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 ++ A + T+ + + + S E E Sbjct: 920 VDAENAEAATEAPATPTDATDATEATDVTDATDSAEEATE 959 >gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] Length = 882 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 384/906 (42%), Positives = 558/906 (61%), Gaps = 76/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R ++H E+ + I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G Sbjct: 242 MRALTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM R+W++S ++ Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVR 421 Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +++ + + S+ + SDG LS+ Q + IL++RL RLTGL +D Sbjct: 422 EMLSRAETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + +I + LDIL+ R+ II +EL S+K E RR++I ++ ED Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ++MVVT+SH GYVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS+ G VY KV+ +P GS +RG+ +INI L +GE+IT ++P E + +V Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMG 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L F ++ R G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G VI++ + Sbjct: 719 DVRPM-GREARGVRGMQLEDGQNVIALLV------------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++Q +LT +E GFGKRT ++ R KG+ A Sbjct: 747 ---------------------AGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQ 785 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843 Query: 892 VSVERI 897 ++++ Sbjct: 844 SGLQQV 849 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++A + S Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSK 529 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L ++ ++T+S G+ K ++ R G+G +AT + + + I Sbjct: 530 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 589 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G I + + E++ V + Sbjct: 590 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 646 Query: 898 RE 899 +E Sbjct: 647 KE 648 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 14/245 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R KG V + D D++ I V+ F Sbjct: 649 FSADKFVFMGTALGTVKKTPLEAF--GRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 706 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + L G+ + ++ + V+ AT Sbjct: 707 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 758 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ QE I+L T G +R Sbjct: 759 ENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTR 818 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV ISL +G ++ + V A+A+ D +G Sbjct: 819 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDNGGE 877 Query: 770 EEITS 774 E + Sbjct: 878 EGGAA 882 >gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae] Length = 876 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 393/904 (43%), Positives = 571/904 (63%), Gaps = 67/904 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++G +A +++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + I + Sbjct: 187 LTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYICARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 L KARDRA +L L+IA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 367 ILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLEA 426 Query: 434 IDDSSYTI-------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DD++ DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 427 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I +D+ ED I +ED+VVT+SH G Sbjct: 487 LLHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLITQEDVVVTLSHEG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK P++ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+++ Sbjct: 547 YVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQV 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ER T I+P E E N V AT G V++ +F Sbjct: 607 PEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVN---VFMATASGTVKKTPADEFS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF +R GR + GVRG Sbjct: 664 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAM-GRTATGVRG 722 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA D+V+S+ + Sbjct: 723 IKLAGEDKVVSLIV---------------------------------------------- 736 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E ILT +E G+ KRT+ ++ +R+ +G+ + V++ N G++V Sbjct: 737 -------PRGEGRILTATENGYRKRTAVAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 787 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+D DQI++++D GTL+R+ V+E+ I R T+GV++ TA+DE VV+++R+ E +E Sbjct: 788 VDDCDQIMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEEL 847 Query: 907 ESTE 910 ++ + Sbjct: 848 DAID 851 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 15/245 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ P + R G + DE DL S V+ FS+ G Sbjct: 644 NVFMATASGTVKKTPADEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFSAAGK 701 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +++ +++ ++ AT++G Sbjct: 702 VVRFKEDDVRAMGRTATG---VRGIKLAGEDKVVSLI------VPRGEGRILTATENGYR 752 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++++ +R+ + + + ++ + I++ T G VR +S + Sbjct: 753 KRTAVAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRIRVSEV- 811 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ + V+++ V D + + + Sbjct: 812 SIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEELDAIDGSAAEGDEDIAPEADTDDDI 871 Query: 775 LKNDS 779 +++ Sbjct: 872 AEDEE 876 >gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124] gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124] gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] Length = 839 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 383/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+D+V+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E E T Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815 >gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake] gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake] Length = 898 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 438/897 (48%), Positives = 635/897 (70%), Gaps = 5/897 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + SVSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K Sbjct: 5 NNVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE Sbjct: 65 AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL +AAHFLL+D+ +DTVDFRPNYD + EPVVL A +PN+LVNG GG+AVGM+TNIP+H Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD C+A IDNP+I D L+ I+RGPDFPTG ILG GI++A+ TG+G+I+++G Sbjct: 185 NLGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +H+E ++ I++ EIPYQVNKA ++E+I ELV+EK+I I DLRDES++ G RV IE Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ S V+LNQ+ T L++ FS+N + L KP+ +L+ I+ FV +R EV+ RRT Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTTFSINTLVLENNKPKVMSLLDIISTFVEYRREVLTRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432 ++ L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + ++++I+ Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMIE 424 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+ D + ++ D L+ VQ ++ILE++L RLT L ++ + +L S+ I++ ++L Sbjct: 425 LVAD-TKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLK 483 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ LL +IK L+ VK +L PRRT I + + ED I +EDMVVTV+ GY+KR Sbjct: 484 NKEALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRAK 543 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQRRGGKGR G +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P Sbjct: 544 LSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPT 603 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG++L+NI L++ E IT++M P++ +L +VFAT GN+RRN L+DF + +G Sbjct: 604 SRGRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALADFQYVPSNG 663 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAM LD D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+ Sbjct: 664 KIAMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSQ 723 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VISM+I+L D +++ Y+K +R + + T + + + ++ Sbjct: 724 DNVISMSILLAMDIGSEKKDLYLKVPLDKRIAVKEEGFIGTGIVK-ILADLGLDQDTFMT 782 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + EQFILTV+E GFGKRTS+Y++R + R G G+ + N G +VA FPV ND Sbjct: 783 MVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRN--GNVVASFPVESNDH 840 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 I+L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV +I +++ E + Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEIDDD 897 >gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] Length = 829 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 382/895 (42%), Positives = 557/895 (62%), Gaps = 86/895 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I +E Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEED 812 >gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] Length = 824 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 379/902 (42%), Positives = 558/902 (61%), Gaps = 86/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E I V++T EM+ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 DTPESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGDP AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+DF+ NYDGS +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ +PDI + LME I GPDFPT +I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S +E I+VTE+PYQVNKA ++E+IAELV EKRI I DLRDESDR G R Sbjct: 243 LRARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+VILN LY++T++Q+ F +N++AL +P+ L LK ++ +EEV+ Sbjct: 303 MVIEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ ++D ++++IR S + AR LM++ Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II++ELL +K+ + RRT I+ + +EDED I +E + +T++H GY+ Sbjct: 457 VLADEEKVLEIIREELLEIKERFNDERRTEIIAASVDQIEDEDLIPQESIAITLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G VYK+K + +P Sbjct: 517 KRLPISTYRSQKRGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L +++ E I T++ + + ++ F TK G +R +++F I Sbjct: 577 YGRTAKGIPIVNLLEIDKDEWINTMIRVEDFV---EDWFLFFTTKKGISKRTPVTEFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV+ DI++ TK G +RFP + +R GR++ GV+GI+ Sbjct: 634 RTNGLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSM-GRSATGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D+V+ M I+ D Sbjct: 693 LSGDDEVVGMEILEENDD------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V++ G+GKRT ++RI +R GKG++ +++ N G LVAV V Sbjct: 711 -----------VLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKN--GPLVAVKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + I+L++ G LIR+ V +I + R T GV + +E V +V ++ + E + + Sbjct: 758 GEEDIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKDEEENHVDP 817 Query: 909 TE 910 E Sbjct: 818 VE 819 >gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] Length = 898 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 441/897 (49%), Positives = 645/897 (71%), Gaps = 6/897 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K Sbjct: 5 NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE Sbjct: 65 AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL +AAHFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG GG+AVGM+TNIP+H Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD C+A IDNPDI D L++I+ GPDFPTG ILG GI++A+ TG+G+I+++G Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +H+E ++ I++ EIPYQVNKA ++E+I ELV+EKRI I DLRDES++ G RV IE Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ S V+LNQ+ T L++ FS+N + L+ KP+ +L+ I+ F+ +R+EV+ RRT Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432 ++ L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + +K++I+ Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+ DS + +D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ ++L Sbjct: 425 LVADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ LL ++K L +K +L PR+T I + + ED I +EDMVVTV+ GY+KRV Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQRRGGKGR G +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG++L+NI L++ E IT++MP PE++ L ++FAT GN+RRN LSDF + +G Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-K 731 KIAM LD D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L+ + Sbjct: 664 KIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQVISM++++ + D + + Y+K + ++RL+ + I + V+ +S++ Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLK-VPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFM 782 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + E+FILTV+E GFGKRTS+Y++R + R G G+ ++ N G +++ F V ND Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 I+L+++KG LIR+ VN+IRI R+T+GV +F T K E+VVSV ++ + + + + Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897 >gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] Length = 868 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 381/895 (42%), Positives = 550/895 (61%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G VI++ + Sbjct: 717 MQLDEGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E Sbjct: 783 VDQEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837 >gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786] Length = 850 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 382/891 (42%), Positives = 550/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G QVI+M + Sbjct: 717 MQLDEGQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630 Query: 898 RE 899 RE Sbjct: 631 RE 632 >gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] Length = 895 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 393/911 (43%), Positives = 566/911 (62%), Gaps = 70/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH LL DL K+TVDF PNYDG+ Q PVV+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV GC+A+ID+PD+ +D LME I GPDFPT +I GR GI AY TGRG + I Sbjct: 183 PPHNLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRVYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +E R+ +++TE+PYQ+NK+ ++EKIAELV+EKR+ I +LRDES+++G R Sbjct: 243 RARHEVEHDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+RG + DVI+N L++ T L+++F +NMVAL +P L +L AF+ R EVV Sbjct: 303 VVIELRRGENPDVIINNLFKQTQLETVFGINMVALIDGEPRILNLKEMLDAFIRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+R H+L GLA+A+AN+DE++ +I+ SP+ A+ +L+ + W + D+ Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + + +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 423 MLERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREIL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I + LDIL + RL+ +I+ EL ++ +E RRT I D+ D I E++VVT Sbjct: 483 ERIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P S +RG+ ++NIL L++GERITT +P + + +V+ AT G V++ Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + SG IA+ LD D ++ +I+L + G+ VRF A+R + R + Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS-RTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI +A+G V+S+ I Sbjct: 719 RGVRGIRMAEGHHVVSLII----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + +L SE G+GKRT+ +F R +G+ A S N G L Sbjct: 738 ------------PQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN--GNL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900 V + D D+++L+SDKGTL+R +E+ + SR T+GV + + +DER+V VERI E+ Sbjct: 784 VTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843 Query: 901 EIVD-EAESTE 910 + + E TE Sbjct: 844 DAEEIIGEDTE 854 >gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6] gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6] Length = 903 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 398/913 (43%), Positives = 563/913 (61%), Gaps = 50/913 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EIK Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEESERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ E++I+L +K G+ VRF + Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 D + ++ + + T+ + Sbjct: 714 --------------------LDENGNPALDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + +LTV+E G+GKRT ++ R +G+ + VS+ N G++V Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE------ 899 V D D+ ++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETEL 871 Query: 900 --SEIVDEAESTE 910 E D E+TE Sbjct: 872 PEGEEADATEATE 884 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692 N+ V+ T++G +R LS++ R + + + ++ Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++ ++ T G VR ++ + GRN+ GV I A+ + V+ + + + Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETELPEG 874 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSV 781 A + + + Sbjct: 875 EEADATEATEQAPQAQDPQADNDDAADQE 903 >gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] Length = 855 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 380/887 (42%), Positives = 557/887 (62%), Gaps = 86/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM++S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + LL D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPDI + LME I GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + +I+V+E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAQTEIEEYK-GKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ + +V+ Sbjct: 302 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM++ Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I NE L +I E Sbjct: 413 -----------------FSLSYEQAQAILDMRLQRLTGLERDKIENEYKELIAKIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++EL+ VK++ + RRT I +EDED I R+++V+T++H GY+K Sbjct: 456 ILADGEKVLEIIREELIEVKEKFNDERRTVISMNEDHLEDEDLIPRQNVVITLTHHGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGGKG G+ D+DF+ LF ++H ++LFF++ G VY+ K + +P Sbjct: 516 RMPISTYRSQRRGGKGIQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L + Q E I+T++P E + +N Y+ F TKHG +R +LS F I Sbjct: 576 GRTAKGIPIINLLQIEQDETISTVIPIEEFD---DNSYLFFLTKHGIAKRTQLSSFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G A+ L DE+ V ++++ TK G +RF + +R+ GR + GV+GISL Sbjct: 633 RGGLFAITLRGDDELHGVRLTDGGQEVIIGTKHGMAIRFHETDVRLM-GRTAGGVKGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ M I+ Sbjct: 692 SDDDHVVGMDIL------------------------------------------------ 703 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +L V+E G+GKRT ++R+ NR GKGI+ ++++ N G+LV++ V+D Sbjct: 704 -----EENHQVLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKN--GSLVSLKVVSD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 I++++ G +IR+ V I R T+GV + + E V +V R Sbjct: 757 EHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVAR 803 >gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] Length = 929 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 372/921 (40%), Positives = 555/921 (60%), Gaps = 26/921 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D P+ D+D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI +LVR+K + IAD Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W +S ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 ARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL +K R++ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ V +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + G + + +S + D + + + Sbjct: 718 --NEFWEKTGSDDA-----EETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRGSG 770 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 L + + I+ E + + +LT + G+GKRT D+ N+ G+G Sbjct: 771 GLRGMRLPENGRIVSLIT--FAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 828 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V ++D ++L++ G LIR V++IR RA GV + + + Sbjct: 829 AINTGERN--GDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGRAAAGVKLINLDEG 886 Query: 889 ERVVSVERIRESEIVDEAEST 909 E++VS+ER+ E AE Sbjct: 887 EQLVSLERVAEEPEDTAAEDE 907 Score = 77.5 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 101/282 (35%), Gaps = 42/282 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + ++++D + + ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEDDCLVGVAKTGGSDDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-------------------- 632 S+LG + + GS A N +S + + Sbjct: 709 SNLGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRG 768 Query: 633 ----------------IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + E +L V+ AT +G +R ++D+ + N+ G+ + Sbjct: 769 SGGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 828 Query: 677 KLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ Sbjct: 829 AINTGERNGDLVAATLVGESDDLMLITSGGVLIRTKVDQIRE-TGRAAAGVKLINLDEGE 887 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 Q++S+ V D A E Sbjct: 888 QLVSLERVAEEPEDTAAEDESDADTGALENEAENKGAEEAEE 929 >gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1] gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1] Length = 881 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 399/935 (42%), Positives = 560/935 (59%), Gaps = 94/935 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WNK Sbjct: 3 ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQ +S+R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K +H LL DL K+TVDF PNYD S P VL AR P +LVNG GIAVGMATNI Sbjct: 123 TEIRMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++GC+A+ID P+I++D LME I GPDFPTGA I GR GI AY TGRG I + Sbjct: 183 PPHNLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGAFINGRAGIVEAYKTGRGRIYM 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E + IV TEIPYQ+NKA ++EKIAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARHHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+RG + DV++N ++ T LQS+F +NMVAL +PE L IL+ FV R EVV Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPELLNLKQILECFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+R H+L GLA+A+AN+D V+ +IR SP+ AR +L+ SW D+ Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + +G LS Q +AIL+LRL RLTGL + + +E L Sbjct: 423 MLERAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLI 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L+IL + +RL+ +I +EL +V+D+ R T I+ D+ D I MVVT Sbjct: 483 AVIAELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GY K PL Y+AQRRGG+G+S M+DED ++ L + S+H +V+ FS+ G VY Sbjct: 543 ISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P+ S A+G+ ++N+L L +GE I+ ++P ++ + Y+ AT +G V++ Sbjct: 603 RVFEIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDE---MEDSYIFMATANGTVKKTA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + F + +G IA+ LD DE++ V + ENDI+L + G+ +RF S +R GR + Sbjct: 660 VEYFARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA +V+S+ + Sbjct: 719 AGVRGIRLADEYKVVSLIV----------------------------------------- 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + +L E GFGKRT + DF + R G+G+ VS+ N G + Sbjct: 738 ------------PQEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN--GPV 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---- 897 V V D D+I+L+SD+GTL+R +E+ R T+GV + DE +V VER+ Sbjct: 784 VGATQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVTLIRLMNDEHLVGVERVVDED 843 Query: 898 ----------------------RESEIVDEAESTE 910 E+E DEA +E Sbjct: 844 DDAGEDAESEERGEEQATTPDAPEAEKTDEAPDSE 878 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 85/254 (33%), Gaps = 15/254 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + + G VK+ + + R G + + + D + + S ++ Sbjct: 640 EMEDSYIFMATANGTVKKTAVEYFARPRSTG--LIALSLDENDELVGVAQTSGENDIMLV 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G + K + A G I R+ V+FA Sbjct: 698 SSSGKTIRFKESDVRAMGRTAAGVRGI---------RLADEYKVVSLIVPQEGCSVLFAC 748 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R DF R G+ + + + + ++I+L + G VR Sbjct: 749 ENGFGKRTLTEDFPVYGRGGQGVIGIQVSERNGPVVGATQVEDTDEIMLISDQGTLVRTR 808 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S + GRN+ GV I L + ++ + V+ D D E + Q Sbjct: 809 ASEV-SCQGRNTQGVTLIRLMNDEHLVGVERVVDEDDDAGEDAESEERGEEQATTPDAPE 867 Query: 770 EEITSLKNDSSVEG 783 E T DS E Sbjct: 868 AEKTDEAPDSEGEE 881 >gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] Length = 850 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 382/891 (42%), Positives = 545/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L QVI+M + Sbjct: 717 MQLDDAQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 >gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047] gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3047] Length = 880 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 414/913 (45%), Positives = 582/913 (63%), Gaps = 43/913 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+T++F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D + G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRESEIVDEAES 908 R+ +++ D E Sbjct: 863 RVCDADEEDSLEE 875 >gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] Length = 880 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 417/913 (45%), Positives = 585/913 (64%), Gaps = 43/913 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R ++E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRESEIVDEAES 908 R+ +++ D E Sbjct: 863 RVCDADEEDSLEE 875 >gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] Length = 847 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 393/894 (43%), Positives = 560/894 (62%), Gaps = 61/894 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + K VS+ EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M +MG +WNK Sbjct: 3 DFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R LI+GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH +L D+ ++TVDF PNYD EP VL AR PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+++ C+A++D+ D+ L ++ GPDFPT ++LG G AY +GRG +V+ Sbjct: 183 PPHNLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVM 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + IE R+ I V+E+PYQVNKA ++E+IAE+V+EKR+ I+DLRDESD+ G R Sbjct: 243 RARAEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELKR A+A+V+LN LY++T+LQS+F++NMVAL P+ L LKAF+ R EVV Sbjct: 303 IAIELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR+ + L KARDRAH+L GLA+A+ NLD ++ +IR + +P A+ +++ R W + Sbjct: 363 TRRSIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAA 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ + S + +DG +LSE Q +AIL+LRL RLTGL +D IR E L I+E L+ Sbjct: 423 LLAERGEPSAGLQADG-YHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLE 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S +RL+ +I+ EL++++D+ RR+ IV + +ED I E+MVVT +H GY+K Sbjct: 482 ILGSDARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 P++ + AQRRGG+G+ ++EDFV +F STH +VLFFS+LG V+ +KV++LP Sbjct: 542 AQPVTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQS 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARGK ++N+LSL E ITT++P E YV T HG V++ L ++ + Sbjct: 602 GRSARGKPIVNLLSLAPSEGITTVLPVREF---QEGQYVCMVTAHGVVKKTPLMEYSRPR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD D +++V + + +L T+ G VRFP +R GR + GVRGISL Sbjct: 659 SQGINAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPM-GRTARGVRGISL 717 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VIS IV Sbjct: 718 DADDRVISAQIVDP---------------------------------------------- 731 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ILT + KG+GK T+ ++R +NR GKG+ A + N G +V V + Sbjct: 732 -------DQVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARN--GQVVGALAVKE 782 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +D+++LVS+ GTLIR+ V IR R +GV + A DE++ + I +++ Sbjct: 783 SDELMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQEE 836 >gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3] gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3] Length = 851 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 380/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + ++ AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M + Sbjct: 717 MQLEDGQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ +++I Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 833 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 >gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] Length = 905 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 396/914 (43%), Positives = 559/914 (61%), Gaps = 75/914 (8%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ K +S+ EM+ S+L YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ W Sbjct: 9 DQDQFAKETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVW 68 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y+K AR+ G+VMGKYHPHG++AIYD + RMAQD+SLR L++GQGNFGSVDGDPPAA Sbjct: 69 NRPYLKSARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAA 128 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL+K A ++ D+ KDTVDF PNYDGS EP VL A+ PN+L+NG GIAV MA Sbjct: 129 MRYTEIRLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMA 188 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EVV C+ +++NPD +D L+E I PDFPTGA+I G G++ Y TGRG Sbjct: 189 TNIPPHNLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGALIYGVAGVREGYRTGRGR 248 Query: 248 IVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +V+R +H E +R+ I+V EIPYQVNKA + +KIAELV EK+I I+D+RDESD+ Sbjct: 249 VVMRAKTHFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDK 308 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG RVVIELKRG +A+V+LN L++ T LQ F +NMVAL +P L +L+AF+A R Sbjct: 309 QGMRVVIELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQPRLLNLKQVLEAFLAHR 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EVV RRT Y LNKARDR H+L GLA+AV N+DE++ +I+ SP P A+ L+ R+W A Sbjct: 369 REVVTRRTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLLARTWAAG 428 Query: 426 DIKDLIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 ++++ D + + DGT LSEVQ IL++RL RLTGL ++ I Sbjct: 429 IAAEMVERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIV 488 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDE 530 E + I + LDIL+ +R+ II+ EL V +E PRR++I +++ E Sbjct: 489 TEYREVVDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIE 548 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I +DMVVT+S+ GY+K PLS YR+QRRGG+G+ +D+D+V LFI +TH ++L Sbjct: 549 DLITPQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTIL 608 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G VY KVW +P GS +RG+ ++N+ L + E+IT ++P + + YV Sbjct: 609 CFSDRGRVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPIKTFD---DEHYVFM 665 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ LSDF ++G IA+ LD D ++ E+D++L + G+ VRF Sbjct: 666 ATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSE 725 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVRG++L +G +VI+M + Sbjct: 726 GDVRAM-GRTARGVRGMALEEGQKVIAMLVADDERRS----------------------- 761 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +LT +E G+GKRT + R KG+ A Sbjct: 762 -----------------------------VLTATENGYGKRTPLIEHTRHGRGTKGMIAI 792 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V + D+I+L++ G L+R V+EIR RAT+GV + + + Sbjct: 793 QSSERN--GRMVAAILVEEGDEIMLITTGGVLVRTRVDEIREMGRATQGVTLIGVEEGDT 850 Query: 891 VVSVERIRESEIVD 904 + V+R+ S+ + Sbjct: 851 LSRVQRVVGSDSPE 864 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 14/249 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E V + LG VK+ LS + R+ G + + D++ + V+ Sbjct: 655 KTFDDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLD--EGDYLIGAAVTDGEHDVM 712 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G + + ARG + ++L +G+++ ++ + V+ Sbjct: 713 LFSDAGKAVRFSEGDVRAMGRTARG---VRGMALEEGQKVIAMLVADD-----ERRSVLT 764 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVR 707 AT++G +R L + + R K + + S +++ + ++I+L T G VR Sbjct: 765 ATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERNGRMVAAILVEEGDEIMLITTGGVLVR 824 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + IR GR + GV I + +GD + + V+ +D+ G Sbjct: 825 TRVDEIREM-GRATQGVTLIGVEEGDTLSRVQRVVGSDSPEVLAAVGESADGEAAAASEG 883 Query: 768 DTEEITSLK 776 S Sbjct: 884 PEAAGESPS 892 >gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] Length = 898 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 441/897 (49%), Positives = 645/897 (71%), Gaps = 6/897 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K Sbjct: 5 NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE Sbjct: 65 AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL +AAHFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG GG+AVGM+TNIP+H Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD C+A IDNPDI D L++I+ GPDFPTG ILG GI++A+ TG+G+I+++G Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +H+E ++ I++ EIPYQVNKA ++E+I ELV+EKRI I DLRDES++ G RV IE Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ S V+LNQ+ T L++ FS+N + L+ KP+ +L+ I+ F+ +R+EV+ RRT Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432 ++ L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + +K++I+ Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+ DS + +D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ ++L Sbjct: 425 LVADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ LL ++K L +K +L PR+T I + + ED I +EDMVVTV+ GY+KRV Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQRRGGKGR G +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG++L+NI L++ E IT++MP PE++ L ++FAT GN+RRN LSDF + +G Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AK 731 KIAM LD D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++ Sbjct: 664 KIAMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQVISM++++ + D + + Y+K + ++RL+ + I + V+ +S++ Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLK-IPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFM 782 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + E+FILTV+E GFGKRTS+Y++R + R G G+ ++ N G +++ F V ND Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 I+L+++KG LIR+ VN+IRI R+T+GV +F T K E+VVSV ++ + + + + Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897 >gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 924 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 463/894 (51%), Positives = 625/894 (69%), Gaps = 10/894 (1%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Y K AR G+VMGK Sbjct: 1 MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA+ FLLD Sbjct: 61 YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ +DTVDF+PNYD S EP VL A +PN+LVNG GIAVGMATNIPTHN GEV+D +A Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R + IE+ DR+ Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDRQ 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TEIPYQVNKA + EKIA+LVR K I I+D+RDESDR G RVVIELKR A+ DV+L Sbjct: 241 AIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ FS NM+AL+ KP L IL+AF+ FREEV++RR ++ LNKARDR Sbjct: 301 NQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLNKARDRG 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGL +AVAN+DEV+ +IR +P+ TAR LM R W+AS++ L++LI D I D Sbjct: 361 HLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVI-ID 419 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 G + L+E Q R ILELRL RLTGL R+ I+ EL + +I E L I+ SR R + ++++E Sbjct: 420 GKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMREE 479 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 LL+ + E+ TPR T I + L D DE I MVVT++ G++KR PL V+R+Q RGG+ Sbjct: 480 LLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGGR 539 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GR+ R +D + F TH V+FFSS G Y+ KVW LP +P A+G+AL+N+L Sbjct: 540 GRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLPE 599 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 + IT ++P P+DE W +L++ FAT GNVRRN+LSDF I SG IAMKLD D + Sbjct: 600 LGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDSL 659 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + V TC + D+ L TK +C+RF I+ +RVFAGR S GVRGI L +GD VIS+ I+ Sbjct: 660 IGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCILN 719 Query: 743 HADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERCQELKLK 796 H DA +ER Y++ +A+RR S + E ++ + + G++++ER +EL+ + Sbjct: 720 HVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQQ 779 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ +LTV++ GFG+R+S+YD+R+S R G+GI S +V P D ++LV Sbjct: 780 EEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLV 839 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +D G LIR+PV+++R+ SR GV +F E V+ V + E + +E ++ E Sbjct: 840 TDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDDT-EEGDTDE 892 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706 T G RR+ D+ R G+ + E++ D++L T G+ + Sbjct: 787 TDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRLI 846 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R P+S +RV + R + GV L + VI + VL D + + + + Sbjct: 847 RLPVSQVRVMS-RQASGVTLFRLNDTETVICVFPVLEDDTEEGDTDEGSEAGAKVIGEAG 905 >gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046] Length = 832 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 384/900 (42%), Positives = 560/900 (62%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I S +IT E+++S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Y Sbjct: 5 QHGHIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGK+HPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA RYT Sbjct: 65 KKSARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDT+D+ PNYDGS EP+VL ARYPN+LVNG GIAVGMATNIP Sbjct: 125 ESRMSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H+LGE +DG +AV DNP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGS+ IR Sbjct: 185 PHHLGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE+ S +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR G R+V Sbjct: 245 AKVEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R A+A+V+LN L++ T++QS F VNM+AL +P+ +L +L ++ ++ V+ R Sbjct: 305 IEVRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA +RAH+L GL IA+ ++DE++ IIR S + E AR +LM+R Sbjct: 365 RTAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMER----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RL+GL R+ I E L I E IL Sbjct: 414 ---------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550 + ++++ II+ E+ +K+ RRT I G +EDED I RE+ V+T++H GY+KR Sbjct: 459 ADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLEMIEDEDLIPRENSVLTLTHNGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFG 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G ++N+L++++GE +T ++ E + + Y +F TK G +R + F I Sbjct: 579 RQAKGLPIVNLLNIDKGEHVTAMIRVTEFK---EDAYFIFTTKTGVTKRTPVDQFANIRT 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L D+++SV +I++ T G VRF IR GR++ GVRGI L Sbjct: 636 NGLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDDIRSM-GRSAAGVRGIKLR 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ M I+ Sbjct: 695 EGDFVVGMEILEPG---------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q IL V+E G+GKRT ++R+ +R G G++ ++ N G + AV V+ + Sbjct: 709 -------QEILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKN--GKMCAVKAVDGS 759 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I+L++ G LIR+ VN+I + R+T+GV + A+ E V +V R+++ E + E + Sbjct: 760 EDIMLITINGMLIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEEDAPDDEEID 819 Score = 74.4 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 66/405 (16%), Positives = 149/405 (36%), Gaps = 33/405 (8%) Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + ++ ++ L +A+ +VV IIR R +R+ + ++I+ D Sbjct: 443 EYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLEMIE---DED 499 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + L+ L R G ++ + ++ L + + L Sbjct: 500 LIPRENSVLTLTHNGYIKRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILF 559 Query: 499 GIIKQELLSVK-DELDTPRRTRIVEGLLDMEDEDCIV-----------REDMVVTVS-HL 545 K ++ K E+ R ++++ + D +ED + Sbjct: 560 FTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNIDKGEHVTAMIRVTEFKEDAYFIFTTKT 619 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G KR P+ + R G + +R++D + + + ++ +S G + + K Sbjct: 620 GVTKRTPVDQFANIRTNG--LIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDD 677 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + A A + + L +G+ + + ++ T++G +R S++ Sbjct: 678 IRSMGRSA---AGVRGIKLREGDFVVGMEILE------PGQEILVVTENGYGKRTPESEY 728 Query: 666 IQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 +R + + + ++ +V+ DI+L T G +R ++ I GR++ Sbjct: 729 RLQSRGGLGLKTMQITDKNG-KMCAVKAVDGSEDIMLITINGMLIRMDVNDI-SVIGRST 786 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GVR I LA+G+ V ++A V + D+ + I Sbjct: 787 QGVRLIRLAEGEYVATVARVKKEEDAPDDEEIDSEIEGESDSGID 831 >gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43] Length = 850 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 382/891 (42%), Positives = 547/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L QVI+M + Sbjct: 717 MQLDDAQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELTAVKAEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 >gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] Length = 914 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 379/916 (41%), Positives = 543/916 (59%), Gaps = 77/916 (8%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +W Sbjct: 29 PMTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDW 88 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y K AR G+VMGKYHPHG+ AIYD + RMAQ +SLR +LI+GQGNFGSVDGD AA Sbjct: 89 NRPYRKSARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAA 148 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K AH +L D+ K+TVDF PNYDG+ +EP+VL ++ PN+LVNG GIAVGMA Sbjct: 149 MRYTEIRLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMA 208 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EVVD C+ ++ +PD +D LMEII PDFPT +I G G+K+ Y TGRG Sbjct: 209 TNIPPHNLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGK 268 Query: 248 IVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R H E + + I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ Sbjct: 269 VVMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKS 328 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R Sbjct: 329 GMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLVSVFLQHRR 388 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ LM +SW++ Sbjct: 389 EVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQL 448 Query: 427 IKDLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 +++++ D +G DG LS+ Q + IL++RL RLTGL + Sbjct: 449 VREMLTRTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQ 508 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLD 526 D I E + + LDIL+ R+ II QEL +++ E + RR+ I D Sbjct: 509 DKIVAEYKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRSIIEHSAQD 568 Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 + ED I DMVVT+SH GY+K PL YRAQ+RGG+G+ +++D++ LFI +TH Sbjct: 569 LCTEDLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTH 628 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNN 645 +L FS+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P S + Sbjct: 629 DYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRSFPAD 688 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV AT G V++ L +F + G IA LD D ++ ++D++L + G+ Sbjct: 689 RYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSDGGKA 748 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VRF + +R + R + GVRG+ L +G VI+M + Sbjct: 749 VRFDENDVRPLS-RQARGVRGMLLEEGQSVIAMLVAED---------------------- 785 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + Q +LT +E G+GKRT ++ R K Sbjct: 786 ------------------------------ETQSVLTATENGYGKRTGIVEYTRHGRGTK 815 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ A S N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + Sbjct: 816 GMIAIQQSGRN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIAL 873 Query: 886 AKDERVVSVERIRESE 901 + ++ ++RI E++ Sbjct: 874 DEGAKLSGLQRIVEND 889 Score = 73.7 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 14/240 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + +G VK+ L + R+GG + D D++ + V+ F Sbjct: 685 FPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLD--DGDYLIGAALTDGQHDVMLF 742 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + S QARG + L + + M ED V+ AT Sbjct: 743 SDGGKAVRFDENDVRPLSRQARGVRGM----LLEEGQSVIAMLVAED----ETQSVLTAT 794 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R K + + ++++ +++I+L T G VR Sbjct: 795 ENGYGKRTGIVEYTRHGRGTKGMIAIQQSGRNGKVVAATLVHADDEIMLITDKGVLVRTR 854 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV I+L +G ++ + ++ DA+ + + Sbjct: 855 VSEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANVADAPIDAPANAEGSADDGAPD 913 >gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] Length = 900 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 393/894 (43%), Positives = 557/894 (62%), Gaps = 42/894 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EIK Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ E++I+L +K G+ VRF + Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 D + ++ + + T+ + Sbjct: 714 --------------------LDENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + +LTV+E G+GKRT ++ R +G+ + VS+ N G++V Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D D+ ++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 865 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 4/146 (2%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692 N+ V+ T++G +R LS++ R + + + ++ Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++ ++ T G VR ++ + GRN+ GV I A+ + V+ + + + Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETELPEG 874 Query: 753 CYMKHMSAQRRLISGDTEEITSLKND 778 + + + + + Sbjct: 875 EEADATEQVPQAQDPQADNDDAAEQE 900 >gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37] gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37] Length = 898 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 399/939 (42%), Positives = 569/939 (60%), Gaps = 98/939 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Sbjct: 3 EFVSDVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK AH LL DL K+TVDF PNYDG+ P V+ + PN+L+NG GIAVGMATNI Sbjct: 123 TEIRMQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+I++ DI +D L+E I GPDFPT +I GR GI +AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGIINGRKGIIDAYHTGRGKIKV 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + IE RE IVV E+PYQVNKA ++EKIAE V++K+I I+ LRDESD+ G R Sbjct: 243 RAKADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+KRG +V+LN LY T +Q F +N VAL+ +P+ F L +L+AF+ R EVV Sbjct: 303 MVVEVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQPKLFNLKEMLEAFILHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+RAH+L GLAI++AN++ ++ +IR S P A+ L + WN + Sbjct: 363 TRRTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSA 422 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + D +++EVQ +AIL+LRL +LTGL + I E L Sbjct: 423 MLEASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I L IL + RL+ +I++EL +K PRRT I D+ ED I ED+VVT Sbjct: 483 EIIAALLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK LS Y +QRRGGKG++ M+DEDF+ L + STH ++L FS+ G +Y Sbjct: 543 LSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP+ S QARG+ ++NIL L +GERIT I+P + ++ +V AT +G V++ Sbjct: 603 KVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYA---DDKFVFMATANGTVKKTA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--------- 712 LS + + SG IA+ L+ +E++ V N+I++ + G+ VRF + Sbjct: 660 LSAYSRPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENG 719 Query: 713 ----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +R GR + GVRGI L +G++V+S+ I Sbjct: 720 APVLDEEGNPEIKVKGVRAM-GRTATGVRGIKLKEGEKVVSLIIPNETG----------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 ILT +E G+GKRT D Sbjct: 768 ------------------------------------------HILTTTENGYGKRTPLED 785 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + +R+ +G+ + VS+ N G +V V+ ND+I+L++++GTL+R V+E+ + R Sbjct: 786 YSSKSRATQGVISIKVSERN--GKVVGAVQVDTNDEIMLITNRGTLVRTRVSEVSVVGRN 843 Query: 877 TKGVVIFSTAKDERVVSVERIRESE-----IVDEAESTE 910 T+GV + TA+ E++V+++RI E E DE +E Sbjct: 844 TQGVTLIRTAEGEKIVALQRIEEIEDLPVYEEDEVTGSE 882 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 87/261 (33%), Gaps = 22/261 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ LS Y R G + + +++ + + I ++ F Sbjct: 640 YADDKFVFMATANGTVKKTALSAYSRPRNSG--LIAINLNEDNELIGVGITDGSNEIMIF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----------------PF 636 S G V + K + L + + M Sbjct: 698 SDAGKVVRFKEAEESAVLDENGAPVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKV 757 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQE 693 +++ T++G +R L D+ +R+ + + + +++ Sbjct: 758 VSLIIPNETGHILTTTENGYGKRTPLEDYSSKSRATQGVISIKVSERNGKVVGAVQVDTN 817 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++I+L T G VR +S + GRN+ GV I A+G++++++ + + Sbjct: 818 DEIMLITNRGTLVRTRVSEV-SVVGRNTQGVTLIRTAEGEKIVALQRIEEIEDLPVYEED 876 Query: 754 YMKHMSAQRRLISGDTEEITS 774 + ++ Sbjct: 877 EVTGSETTELNAEASADQTEE 897 >gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4] Length = 850 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 381/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ + H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M + Sbjct: 717 MQLDDGQQVIAMLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 >gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] Length = 810 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 386/889 (43%), Positives = 548/889 (61%), Gaps = 85/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRILF M + G +K Sbjct: 3 EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR G+V+GKYHPHG+AA+YDAL RMAQD+S+R LIEG GNFGS+DGDPPAA R Sbjct: 63 PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +DG + +ID PD LM++I+GPDFPTG +I+GR GI+ AY TGRG I Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + + +IVVTEIPY+V K+ ++EKIAELV+E+RI I DLRDE+DR G R Sbjct: 243 IRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL RGA+ +VILNQLY++T +Q + + +AL +P TL +L+ ++ +++V+ Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ L KA RAH+L GL IA+ ++D V+ +IR S + AR LM+ Sbjct: 363 VRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ + E L EI+ Sbjct: 413 ----------------NFNLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+S +L IIKQEL ++D RRT+IV G + E ED I ED+V+T++H GY+K Sbjct: 457 VLNSEKMVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ YR+QRRGG+G +G+ R+EDFV+ LFI +TH ++LFF++ G VY +V +P Sbjct: 517 RLPVDTYRSQRRGGRGITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG A++N++ + Q E++T ++P + + ++ T+ G V+R L++F I Sbjct: 577 SRTARGTAVVNLIEIGQDEQVTAVIPVRDFG---EDRDLLMCTRRGVVKRTALAEFGHIR 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G IA+ LD DE+++V+ D+LL T+ GQ +RFP++ +R GR + GV GI L Sbjct: 634 RGGLIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTM-GRTARGVMGIRL 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ M + Sbjct: 693 EEGDEVVGMEVADD---------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L ++++G+GKRT +FR R GKGIRA ++ N G + V Sbjct: 707 -------EAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARN--GQVAGFEVVRP 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++++L+S G ++RVPV+++ I RA +GV + +RV +V + Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVA 806 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 9/215 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 +E+ ++ T G R P+ R R G+ GI + D V + I + Sbjct: 499 LIAEEDVVITLTHRGYIKRLPVDTYRS-QRRGGRGITGIQTREEDFVSQLFIATTHENLL 557 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + Y + + + + ++ +++ +L + Sbjct: 558 FFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQVTAVIPVRDFGEDRDLLMCTR 617 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G KRT+ +F R G+ A + + LVAV + ++L++ +G IR Sbjct: 618 RGVVKRTALAEFGHIRRG--GLIALSL---DPGDELVAVQLTDGRGDVLLLTRQGQAIRF 672 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 PV E+R R +GV+ + + VV +E + Sbjct: 673 PVAEVRTMGRTARGVMGIRLEEGDEVVGMEVADDE 707 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 6/156 (3%) Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 K + + G+ + + + +E ++L +E ++T++ +G+ KR Sbjct: 459 NSEKMVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIKRL 518 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 +R R G+GI + + + L F ++ ++ +++G + V+E+ Sbjct: 519 PVDTYRSQRRGGRGITGIQTREEDFVSQL---FIATTHENLLFFTNRGKVYHRRVHEVPE 575 Query: 873 ASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 ASR +G V + +DE+V +V +R+ + Sbjct: 576 ASRTARGTAVVNLIEIGQDEQVTAVIPVRDFGEDRD 611 >gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017] gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] Length = 871 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 385/910 (42%), Positives = 552/910 (60%), Gaps = 51/910 (5%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S + + I + DEM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 4 SSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTP 63 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI G GNFGS+D DPPAA Sbjct: 64 DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAA 123 Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTECRLQ + LL D+ ++TVDF N+DGS QEP+VL AR P +L+NG GIAVGM Sbjct: 124 MRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGEV+DG VA+I NP+I LM+II GPDFPTG ILG GI+ AY TGRG Sbjct: 184 ATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTTGRG 243 Query: 247 SIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 SI +RGV+ IE DRE I++TE+P+Q NKAA++E+IAE V +KR+ I+D+RDE Sbjct: 244 SITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRDE 303 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIELKR A V+LN LY+ T +Q+ F NM+AL G P+ TL L F+ Sbjct: 304 SDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLSVFL 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FRE+ ++RRT++ L KA++R H+L GL IA+ NLD V+++IR + + AR+ELM Sbjct: 364 EFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELM---- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LS+ Q AIL+++L RLT L + I E L Sbjct: 420 ----------------------DGFGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQE 457 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R R+L II+ E+ +K + +PRRT I L D++D D I + V+ V Sbjct: 458 RIADLEDILARRERVLEIIETEVTELKTKFASPRRTLIEANLADLDDIDLIANDQAVILV 517 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR+P+ + AQ R +GR+G ++++D V F H SVLFFS G VY + Sbjct: 518 TEQGYVKRMPVDTFNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLR 577 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +++P+ S ARG L+ +L + + E+IT+++P E + Y+V T G +++ L Sbjct: 578 AYQIPVSSRTARGVPLVQLLPIPREEKITSVIPVSEFS---EDEYLVMMTAGGFIKKTAL 634 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720 + F I +G IA+ L+ D + V E+ I++ ++ G + F +R GR Sbjct: 635 AAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPL-GRA 693 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVR + L +GD+ I M I+ A + + D ++ + D Sbjct: 694 TRGVRAMRLREGDEFIGMDILSSAVVETL--------------GNATDADDEETDDPDVL 739 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 VE + +EE + ++ ++L ++ GFGKR FR+ NR+GKG+ AT K+ Sbjct: 740 VEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQ 799 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L A+ VN D+++LV+ +G +IR V +I SRA GV + +D+ + +V + Sbjct: 800 LAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVALVPPE 859 Query: 901 EIVDEAESTE 910 ++ DE TE Sbjct: 860 DLSDEEGETE 869 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%) Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDIL 697 +V+ T +G +R ++ F NR + KL + D++ ++ E++++ Sbjct: 754 QPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQLAALRIVNAEDELM 813 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 L T G +R ++ I R + GVR L + D + ++A+V D +E ++ Sbjct: 814 LVTSRGIVIRQAVTDISS-QSRAATGVRVQRLDEDDYIAAVALVPPEDLSDEEGETELE 871 >gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] Length = 915 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 403/941 (42%), Positives = 578/941 (61%), Gaps = 91/941 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ +++ ++I DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 3 MSDTTPTAER------LPINIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G EWN+ Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R LL++GQGNFGSV Sbjct: 57 RELGNEWNRSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ + A LL D+ K+TV F PNYDGS +EP VL A+YPN+LVNG Sbjct: 117 DGDSAAAMRYTEVRMTRLASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D A+ID+P++D ALM+ I GPDFPTG I G+ GI + Sbjct: 177 GIAVGMATNIPPHNLGEVIDATCALIDDPELDPRALMQYIPGPDFPTGGSIHGQAGIVSG 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++IR + IE +E I+V E+PYQVNKA ++E+IAELVREK++ I+DLR Sbjct: 237 YETGRGSVIIRAKTVIETRKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIE+KR ADV+LNQL+++T++QS F +N +AL +P +L L A Sbjct: 297 DESDREGMRVVIEIKRDHQADVVLNQLFKHTAMQSSFGINALALVDGRPVTLSLKAFLVA 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R EVV RRT + LNKA+ RAH+L GLA+A+AN+D ++ +IR + A+ LM Sbjct: 357 FLKHRREVVTRRTIFELNKAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAE 416 Query: 421 SWNASDIKDLIDLI---DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 W ++ ++ +D +G LS Q +AIL++RL RLTGL + I E Sbjct: 417 RWERGPVEAMLARALGENDVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEF 476 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + EI IL+S L+ +I+QELL +K+ PRRT IVE + D D I E+ Sbjct: 477 EEILKEIAYLKGILASDGVLMDVIRQELLEIKERYANPRRTLIVEAVGDFSIADLIPEEE 536 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVTVSH GY+KR P Y+AQRRGGKG+S ++DEDFV +F+ STH ++ F+ G Sbjct: 537 MVVTVSHGGYIKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGR 596 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V+K KV+ +P GS +RGKA++N+L L +GE++ I+P P E+ W + ++FAT+ G + Sbjct: 597 VFKLKVYEIPSGSRLSRGKAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFATRRGLI 656 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET--------CTQEND-------------- 695 ++ LS++ I +G A+ L D+++ V + ++ Sbjct: 657 KKTVLSNYANIRTTGIRAINLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPEDESSAD 716 Query: 696 -----ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 I+L + G+ VRF +R GR S GVRG+ L D VI++ ++ Sbjct: 717 AAPGRIMLFAQGGKAVRFADEKVR-RVGRVSQGVRGMRLKGEDGVIALTVID-------- 767 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +LT++EKG+GK Sbjct: 768 -------------------------------------------GEAVGQLLTITEKGYGK 784 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 R+ + R +G+ DV ++ G +V+ V++ D++++++D+GT++R V+ I Sbjct: 785 RSDLSQYPTKGRGTQGVIGMDV--RDKTGNVVSALVVDEQDEVMVITDQGTVLRTKVDSI 842 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-AESTE 910 R+A RAT GV + + A+ ERVVSV R+ E+E VD E E Sbjct: 843 RVAGRATMGVRVLNVAEGERVVSVARLAEAEEVDAFDEEGE 883 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 8/147 (5%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQ 704 ++ T+ G +R+ LS + R + + +D RD+ +S +++++++ T G Sbjct: 774 LLTITEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGT 833 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R + +IRV AGR ++GVR +++A+G++V+S+A + A+ +E + + L Sbjct: 834 VLRTKVDSIRV-AGRATMGVRVLNVAEGERVVSVARL----AEAEEVDAFDEEGEPIAPL 888 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + +D + + SEE Sbjct: 889 TEGDALGEDGVADDGVADASASEEEGA 915 >gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] Length = 834 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 380/901 (42%), Positives = 549/901 (60%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI I DLRDESDR G R Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L I E + Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P + ++ Y+ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNYLFFATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V Sbjct: 692 DDNDEVIGMDVVDQ---------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ GT+IR + I R +GV + + +D+ V +V R +S+ D E Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDSDEEG 816 Query: 910 E 910 E Sbjct: 817 E 817 >gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2] gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2] Length = 920 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 389/946 (41%), Positives = 556/946 (58%), Gaps = 107/946 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 EVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF NYDG+ + P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDGC+A+ID+ + D LME I+GPDFPT +I GR GI AY TGRG + +R + Sbjct: 187 LGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE +E I+VTEIPYQVNKA ++EKIAELV++K+I I +LRDESD++G R+VIE Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +A+V+LN LY+ T ++S+F +N VAL +P+ L +L AF+ R EVV RRT Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR++AH+L GLA+A++N+D V+ +I+ SP+ A+ +L+ + W D+ +++ Sbjct: 367 VYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLER 426 Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + DG +LS Q +AIL+LRL +LTGL R+ + N+ L +I Sbjct: 427 AGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL + RL+ +I++EL +V++E RR+ IV D ED I E +VVT+S+ Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K P+ YRAQ+RGG+G+S ++D+D+V L + TH ++L F++ G V+ + + Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTNAGKVFWLRTF 606 Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNN------------------ 645 LP G +RGK ++N+L L ERIT I+ D Sbjct: 607 ELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADVIE 666 Query: 646 ----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 ++ AT G V+R L++F + SG IA+KL + Sbjct: 667 DETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEH 726 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V DI+L + G+ VRF S +RV + R + GVRGI LA+G VIS+ + Sbjct: 727 LVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDVISLIVPEE 785 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 ILT Sbjct: 786 NG-----------------------------------------------------QILTA 792 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE G+GKRT D+ R G+G+ A +++ N G LV V + I+L+S++GTL+ Sbjct: 793 SEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLV 850 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 R VN++ + R T+GV + A E + + I E E V+E + Sbjct: 851 RTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGE 896 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 15/244 (6%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VKR L+ + R G V +++ + + ++ I H ++ + G Sbjct: 689 PFIFMATSSGIVKRTALANFARPRSSG--LIAVKLQEGEHLVNVAITQGHEDIMLVARNG 746 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + ++ + S ARG I ++ + N ++ A++HG Sbjct: 747 KAVRFHQSKVRVMSRLARGVRGI---------KLAEGVDVISLIVPEENGQILTASEHGY 797 Query: 657 VRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+D+ R G IAM ++ E++ E DI+L + G VR ++ + Sbjct: 798 GKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQV 857 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 +GRN+ GVR I LA G+ + +A + + +E + + + + ++ Sbjct: 858 -STSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGEADEVLDGEATPEAPKSDASD 916 Query: 774 SLKN 777 + Sbjct: 917 DAEE 920 >gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] Length = 810 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 384/893 (43%), Positives = 551/893 (61%), Gaps = 85/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Sbjct: 3 EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR G+V+GKYHPHG+AA+YDAL RMAQD+S+R LIEG GNFGS+DGDPPAA R Sbjct: 63 PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +DG + +ID+PD LM++I+GPDFPTG +I+GR GI+ AY TGRG I Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE ++ + +IVVTEIPY+V K+ ++EKIAELV+E+RI I DLRDE+DR G R Sbjct: 243 IRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL RGA+ +VILNQLY++T +Q + + ++AL +P TL +L+ ++ +++V+ Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRT++ L KA RAH+L GL IA+ ++D V+ +IR S + AR LM+ Sbjct: 363 LRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L+E Q +AIL++RL RLTGL R+ + E L EI+ Sbjct: 413 ----------------SFSLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+S +L IIKQEL ++D RRT+IV G D E ED I ED+V+T++H GY+K Sbjct: 457 VLNSEKMVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+QRRGG+G +G+ R+EDFV LFI +TH ++LFF++ G VY +V +P Sbjct: 517 RMPVNTYRSQRRGGRGVTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A++N++ + + E++T ++P + + ++ T+ G V+R L++F I Sbjct: 577 GRTARGTAVVNLIEIERDEQVTAVIPVRDFG---EDRDLLMCTRRGVVKRTALAEFSHIR 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G IA+ LD DE+++VE D+L+ T+LGQ +RFP++ +R GR + GV GI L Sbjct: 634 RGGLIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTM-GRAARGVMGIRL 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ M + Sbjct: 693 DEGDEVVGMEVADD---------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L +++ GFGKRT +FR R GKGIRA ++ N G + V Sbjct: 707 -------EAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARN--GRVAGFEVVRP 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 ++++L+S G ++RVPV+++ + RA +GV + +RV +V + Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVAHKGD 810 Score = 91.0 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 K + + + + + + ++ ++L +E ++T++ +G+ KR Sbjct: 459 NSEKMVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIKRM 518 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 +R R G+G+ + + + +F ++ ++ +++G + V+EI Sbjct: 519 PVNTYRSQRRGGRGVTGIQTREEDF---VAQLFIATTHENLLFFTNRGKVYHRRVHEIPE 575 Query: 873 ASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 A R +G V + +DE+V +V +R+ + Sbjct: 576 AGRTARGTAVVNLIEIERDEQVTAVIPVRDFGEDRD 611 >gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] Length = 820 Score = 903 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 374/885 (42%), Positives = 540/885 (61%), Gaps = 86/885 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ +K + K Sbjct: 7 KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I G+VM +HPHG+ AIYD++ R+AQD+S R LIEG GNFGS+DGDPPAA RYTE R Sbjct: 67 AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +L D+ K+TVDF PNYD +EPV+L A+ PN+L+NG GIAVGMATNIP HN Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 +GEV+DG + +IDNP++ D LM++I+GPDFPTGA I+GR GI+ AY TGRGSI IR + Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIKIRAQA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + R I+V EIP+QVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIEL Sbjct: 247 TIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ +VILNQLY++T +Q F + M+AL +P+ L +L ++ +++V+ RRTK Sbjct: 307 KKDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKDVITRRTK 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA RAH++ GL IA+A+LDEV++IIR S E A++ L+ Sbjct: 367 YELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVT--------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+EVQ AI+E+RL LTGL + + E L +I +L+ Sbjct: 412 -----------NFNLTEVQAEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++LGIIK EL VK + PRRT I D + ED I E MVVT+++ GY+KR+ L Sbjct: 461 KKVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISL 520 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR+QRRGGKG + + ++EDFV LF+ STH +LFF++ G Y+ KV +P A Sbjct: 521 DTYRSQRRGGKGITAMGTKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTA 580 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G L+N+L ++ GE +TT++P + Y+ ATK G V++ LS++ R G Sbjct: 581 KGTPLVNLLYISSGEYVTTVIPIKDFT---EEAYLFMATKQGVVKKTNLSEYDTSRRDGI 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ LD DE+++VE +I+L+T+ G +RFP +R GR + GV+GI+L D Sbjct: 638 NAINLDESDELVAVELTHGREEIILSTREGMAIRFPEEDVRPM-GRTARGVKGITLTGDD 696 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V++M +V Sbjct: 697 SVVNMDVVK--------------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+ G+GKRT+ ++R R GKGI S N G +V V D+D+I Sbjct: 706 --DGGDLLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRN--GPVVGALVVKDDDEI 761 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++S +G +IR+ ++ R T+GV + A+++ +V+V ++ Sbjct: 762 MMISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKVA 806 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 20/239 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730 + L DE++ + ++ + K G F ++ ++ R+ G+ L Sbjct: 384 IALAHLDEVIKIIRESRTTE---EAKQGLVTNFNLTEVQAEAIVEMRLRSLTGLEVEKLE 440 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K + ++ D K + + ++ ++ + + Sbjct: 441 KEYK----DLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDI 496 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L +E ++T++ +G+ KR S +R R GKGI A + + + L F + + Sbjct: 497 EDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTKEEDFVKHL---FVASTH 553 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906 ++ +++G R+ V+EI A R KG + + + E V +V I + +EA Sbjct: 554 HYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYVTTV--IPIKDFTEEA 610 >gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] Length = 906 Score = 903 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 399/934 (42%), Positives = 564/934 (60%), Gaps = 93/934 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Sbjct: 3 EFAPDVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVDF PNYDG+ P V+ + PN+L+NG GIAVGMATNI Sbjct: 123 TEIRMDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+I+NPD+ +D L+E I GPDFPT +I GR GI + Y TGRG + I Sbjct: 183 PPHNLGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGIINGRKGIIDGYKTGRGKLKI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + +E RE I+V E+PYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R Sbjct: 243 RAKARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KRG +VILN LY T +QS F +NMVAL+ +P+ L +L AF+ R EVV Sbjct: 303 MVIEVKRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQPKLLNLKEMLHAFILHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR RAH+L GLAI++AN++ ++ +IR S P A+ L + W ++ Sbjct: 363 TRRTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAA 422 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D ++++ Q +AIL++RL +LTGL + I NE L Sbjct: 423 MLEASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELI 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I L IL + RL+ +I +EL V+ RRT I D+ ED I ED+VVT Sbjct: 483 EIITALLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + STH ++L FS+ G +Y Sbjct: 543 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP+ S QARG+ +INIL L QGERIT I+P + ++ +V AT +G V++ Sbjct: 603 KVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYD---DDKFVFMATANGTVKKTA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--------- 712 LS + + SG IA+ L+ +E++ EN+I++ + G+ VRF + Sbjct: 660 LSAYSRPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQG 719 Query: 713 ----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +R GR + GVRGI L +G++ +S+ + Sbjct: 720 NPVLDENGVQEIKFKGVRPM-GRTATGVRGIKLKEGEKAVSLIV---------------- 762 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 ILT +E G+GKRT D Sbjct: 763 -------------------------------------PNATGHILTCTENGYGKRTPLSD 785 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + +R+ +G+ + VS+ N G +V V++ND+I+L+S++GTL+R PV+ + I R Sbjct: 786 YASKSRATQGVISIKVSERN--GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRN 843 Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 T+GV + T DE++V+++RI E + E E Sbjct: 844 TQGVTLIRTRDDEKIVALQRIEEVHELPVYEDDE 877 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + V + G VK+ LS Y R G + + D++ + I + ++ Sbjct: 639 TYDDDKFVFMATANGTVKKTALSAYSRPRASG--LIAINLNDDNELIGALITNGENEIMI 696 Query: 592 FSSLGFVYKEKVWR----LPIGSPQARGKALINILSLNQGERITTIMP------------ 635 FS G V + K + + + + + Sbjct: 697 FSDAGKVVRFKEAEETLVVDEQGNPVLDENGVQEIKFKGVRPMGRTATGVRGIKLKEGEK 756 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692 +++ T++G +R LSD+ +R+ + + + +++ + Sbjct: 757 AVSLIVPNATGHILTCTENGYGKRTPLSDYASKSRATQGVISIKVSERNGKVVGAVQVDE 816 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++I+L + G VR P+ + GRN+ GV I ++++++ + Sbjct: 817 NDEIMLISNRGTLVRTPVHGV-SIVGRNTQGVTLIRTRDDEKIVALQRIEEVHELPVYED 875 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + + + + ND ++ Sbjct: 876 DETTQNIPVEQKEGAELDPEITESNDETLSE 906 >gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10] gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10] Length = 834 Score = 903 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 380/901 (42%), Positives = 549/901 (60%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI I DLRDESDR G R Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L I E + Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P + ++ Y+ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNYLFFATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V Sbjct: 692 DDNDEVIGMDVVDQ---------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ GT+IR + I R +GV + + +D+ V +V R +S+ D E Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDADEEG 816 Query: 910 E 910 E Sbjct: 817 E 817 >gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] Length = 918 Score = 903 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 365/921 (39%), Positives = 548/921 (59%), Gaps = 28/921 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+++R +L++GQGNFGS+ Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + E + + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIVDEAEST 909 E +VS+ER+ E E + Sbjct: 885 ETLVSLERVAEDESESDLSDA 905 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 107/271 (39%), Gaps = 40/271 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGSDDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ ++L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ ++ +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +S+ V +++ D + + + Sbjct: 888 VSLERVAEDESESDLSDASVISSVTEPETGN 918 >gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] Length = 876 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 412/920 (44%), Positives = 559/920 (60%), Gaps = 73/920 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E +E + + V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MAET----PKEIAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WNK Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR L++GQGNFGS+ Sbjct: 57 NELNNDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TVDF NYDGS Q PVVL R PN+L+NG Sbjct: 117 DGDSAAAMRYTEIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV GC+A IDNP+ID+D LME I GPDFPTGA+I GR GI A Sbjct: 177 GIAVGMATNIPPHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAIINGRAGIVQA 236 Query: 241 YATGRGSIVIRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG I +R + I S ++ I++ EIPYQ+NKA ++E+IAELV+EK++ I +L Sbjct: 237 YRTGRGRIYVRARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITEL 296 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIEL+RG DV+LN LY T LQS+ +NMVAL +P L+ +++ Sbjct: 297 RDESDKDGLRVVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQPRTLNLLEMIE 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFV R EVV RRT YLL KAR+R HVL GLAIA+ N+DE++ +I+ SP P A+ L+ Sbjct: 357 AFVRHRREVVTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVA 416 Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471 + W + ++ +++ + + +LS Q +AILELRL RLTGL + Sbjct: 417 KPWQSGEVTGMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHE 476 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 + E + +EI L+IL RL +I+ EL + +E R T I + D+ ED Sbjct: 477 KLLQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVED 536 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED VVT+SH GY K LS Y+AQRRGG GRS ++DEDFV L I STH ++L Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILC 596 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS LG VY KV+ +P+ S ARG+ ++N+L L++GERIT+I+P E ++ A Sbjct: 597 FSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYE---EGHFIFMA 653 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ + F + G A++L++ D ++ D++L + G+ VRF Sbjct: 654 TARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQ 713 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 A+R GR + GVRGI L ++IS+ + Sbjct: 714 AVRAM-GRTARGVRGIKLGDEHRLISLIV------------------------------- 741 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + ILTVSEKG+GKRT + +F R KG+ A Sbjct: 742 ----------------------PQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMA 779 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N G LV V+ D+I+L+SD+GT +R V EI R T+GV + T +DE++ Sbjct: 780 TTAKN--GPLVGAVQVSTGDEIMLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKL 837 Query: 892 VSVERIRESEI-VDEAESTE 910 V + RI E + V EAES E Sbjct: 838 VRLSRIVEDDDAVPEAESAE 857 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 53/415 (12%), Positives = 125/415 (30%), Gaps = 23/415 (5%) Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 R H L GL + +++ + E + R ++K+L++ D T Sbjct: 464 ELRLHRLTGLEHEKLLQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLT 523 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC---LDILSSRSRL 497 +D T LS E R+ ++ G ++ + + + Sbjct: 524 EITDSTHDLSVEDLITE-EDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFV 582 Query: 498 LGIIKQELLSVKDELDTPRR------------TRIVEGLLDMEDEDCIVREDMVVTVSHL 545 ++ + + +R G + E + + Sbjct: 583 EHLLIASTHATILCFSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVE 642 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS-SLGFVYKEKVW 604 GY + + + A+ K R + ++ + + G + Sbjct: 643 GYEEGHFIFMATARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLS 702 Query: 605 RLPIGSPQARG--KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +A+ +G ++ + ++ ++ G +R Sbjct: 703 SEGKAVRFQEQAVRAMGRTARGVRGIKLGDEHRLISLIVPQADSTILTVSEKGYGKRTDT 762 Query: 663 SDF--IQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +F G IAM ++ + ++I+L + G VR + I GR Sbjct: 763 EEFPCKGRGTKGVIAMATTAKNGPLVGAVQVSTGDEIMLISDQGTAVRTRVEEISTL-GR 821 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 N+ GVR I + ++++ ++ ++ D E S + + + + S Sbjct: 822 NTQGVRVIKTREDEKLVRLSRIVEDDDAVPEAESAETVGSPESGVPEANGDIGES 876 >gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125] gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.] gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans] gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125] Length = 833 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 378/888 (42%), Positives = 554/888 (62%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + L+ D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NPDI + LME I GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +++I+V EIPYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAKTEIEEH-HGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L+ ++A + V+ Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L I E Sbjct: 413 -----------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++ELL +K++ + R+T I EDED I R+++V+T++H GY+K Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+Q+RGG+G G+ ++DFV LF ++H ++LFF++ G VY+ K + +P Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L + Q E I+TI+P E + Y+ F TK G +R +LS F I Sbjct: 576 GRTAKGIPIINLLQIEQDEYISTIIPIEEFT---EDHYLFFMTKDGIAKRTQLSSFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G A+ L DE+ V + ++++ T+ G +RF + +R+ GR + GV+GISL Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLM-GRTATGVKGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ M IV Sbjct: 692 TGDDHVVGMDIV------------------------------------------------ 703 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+EKGFGKRT D+RI R GKGI+ ++++ N G LV++ V+ Sbjct: 704 -----EDGQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKN--GPLVSLKVVSV 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G +IR+ V +I + R T+GV + A+ E V +V R+ Sbjct: 757 DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVARV 804 >gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] Length = 830 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 373/888 (42%), Positives = 547/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ + I +EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EEDVPRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ ++YDA+ RMAQD+S R +L+ G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + L+ DL KDTVDF NYDG+ +EP V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NPDI + LME I GPDFPTG ILGR+GI+ AY+TGRGSI Sbjct: 183 IPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + I + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I +LRD SDR G Sbjct: 243 VRAKTEIVENK-GKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMN 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R A+ +VILN L++ T+LQ+ F +NM+AL +PE L L+ ++A + EV+ Sbjct: 302 IVIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA RAH+L GL IA+ ++DE++ +IR S E AR L++R Sbjct: 362 RRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD + E + I E Sbjct: 413 -----------------FELSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +++ +I++E+L++K++ + RRT I +EDED I R+++V+T++H GY+K Sbjct: 456 ILASDEKVIDVIQEEILAIKEKFNDERRTVISASEEHLEDEDLIPRQNIVITITHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YRAQ+RGGKG G+ D+DFV LF +TH +VL F++ G Y+ K + +P Sbjct: 516 RLPISTYRAQKRGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G IN+L + GE I+T++P E ++ Y+ F T+HG +R KLS F I Sbjct: 576 GRTAKGIPAINLLPFDPGETISTVIPI---ECFDDDSYLFFVTEHGIAKRTKLSAFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G A+ L D + V ++++ TK G +RFP + +R+ GR + GV+GI+L Sbjct: 633 KGGLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLM-GRTAGGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D V+ M +V Sbjct: 692 SENDGVVGMEVVDEN--------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+EKG+GKRT ++R+ +R GKGI+ +++ N G LV++ V D Sbjct: 707 --------QSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKN--GPLVSLKMVAD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D I++V+ G +IR V+ I R T+GV + + E V +V R+ Sbjct: 757 EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARV 804 >gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] Length = 851 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 380/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ + Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI++ + Sbjct: 717 MQLEDGQQVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833 Score = 80.2 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++ + S Sbjct: 454 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L + ++T+S G+ K ++R R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G V +F + E++ V + Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 >gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] Length = 808 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 395/893 (44%), Positives = 560/893 (62%), Gaps = 86/893 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + G ++NK Y Sbjct: 2 ESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDA+ RMAQD+SLR L++GQGNFGS+DGD PAA RYTE Sbjct: 62 KSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ + A LL DL K+TVDF PNYDGS QEP+VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 VRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV + +A I NP I L LM I+ GPDFPT I G GI AY TG+G I +R Sbjct: 182 HNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGSDGIAEAYRTGKGLIRLRA 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E+ G RE I++ E+PYQVNK ++E+I ELV++K+I I D+RDESDR+G RVVI Sbjct: 242 RTFLEQ-RGGREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRVVI 300 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L++ A ILNQL+ +T++Q + +N+VA+ +PE +L +L F+ R EV+VRR Sbjct: 301 QLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNNRPELLSLKDLLTEFLKHRREVIVRR 360 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KA +RAH+L GL IA+ +LD+++ +IR + +P TAR +L++R Sbjct: 361 TLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVER------------ 408 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+EVQ +AILE+RL RLTGL R I +E L +I +IL+ Sbjct: 409 --------------FTLTEVQAQAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILA 454 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + + + +I+ +L+ ++D PRRT I+ ++ ED I EDMVVTVSH GY+KR P Sbjct: 455 NEALVYQLIEADLIDLRDRYGDPRRTEIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNP 514 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L++YR+QRRGGKGR+G+ ++++DFV+ L+I STH L FS+LG +Y KV +P+GSP Sbjct: 515 LNLYRSQRRGGKGRTGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPS 574 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGKA++N+L+ E++TTI+P E Y+V ATK G +++ +L +F + G Sbjct: 575 ARGKAIVNLLNFGSQEKLTTILPIREFV---PEHYLVMATKRGIIKKTELMNFSRPRSGG 631 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA LD DE++SV ++ L T LG+ +RF +R GR++ GVRG+++A+ Sbjct: 632 LIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDM-GRSARGVRGMTVAED 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ M I+ A Sbjct: 691 DCIVGMEILSAEGA---------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ILTV+ G+GKRT ++R+ R G G+ A ++ N G +V + V ++D+ Sbjct: 705 -------ILTVTANGYGKRTRHEEYRLQKRGGSGLLALRITDRN--GPVVGIIQVTEDDE 755 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I+L++D+G +IR+PV I + R T+GV + T +ERVVS+ R+ E E Sbjct: 756 IMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIARLAEKGDEGE 808 >gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] Length = 885 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 397/904 (43%), Positives = 553/904 (61%), Gaps = 69/904 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL KDTVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMSKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+ C+A+I + I +D LM + GPDFPTGA+I GR GI AY TGRG I + Sbjct: 183 PPHNLREVVNACLALIGDAHISIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242 Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + I R+ I+V EIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARAEVITDEKTGRDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL++G DV+LN LY TSLQ++F +NMVAL +P L IL+AF+ R EVV Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT +LL KAR+R HVL GLAIA+AN+D+V+ +++ SP+P AR L+ W ++ Sbjct: 363 TRRTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTS 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + DG LS Q +AIL+LRL RLTGL + + E Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI + LDIL R RLL +I++EL + E RRT I + D+ ED I ED VVT Sbjct: 483 AEIADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PL+ Y+ QRRGG G++ + ++DEDFV L I +TH ++L F++LG VY Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWI 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+++P+ +RG+ ++N+L L++GER+T+I+P E ++ ++ AT G V++ Sbjct: 603 KVYQIPVAGRSSRGRPMVNLLQLDEGERVTSILPLEE---HSDDRFIFMATAQGYVKKTD 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ F +G A+ L D ++ D++L + G+ RF SA+R GR S Sbjct: 660 LASF-APRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAM-GRAS 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI+LA G ++IS+ + Sbjct: 718 RGVRGINLADGHRMISLLV----------------------------------------- 736 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +LTVSE G+GKRT+ DF R GKG+ A S+ N G L Sbjct: 737 ------------PDARGTVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERN--GRL 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V D+++L+S++GTL+R +++ R T+GV I T + E +V VERI +S Sbjct: 783 VGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRVERIVDSG 842 Query: 902 IVDE 905 + Sbjct: 843 EEGD 846 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 100/261 (38%), Gaps = 16/261 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + + GYVK+ L+ + + G + ++D + I + V+ Sbjct: 638 EEHSDDRFIFMATAQGYVKKTDLASFAPRSAGLRAIVLG---EDDVLVGTAITDGNQDVM 694 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FSS G + + +RG + ++L G R+ +++ V+ Sbjct: 695 LFSSEGKATRFSESAVRAMGRASRG---VRGINLADGHRMISLL------VPDARGTVLT 745 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVR 707 +++G +R + DF R GK + + S ++ ++++L + G VR Sbjct: 746 VSENGYGKRTTVDDFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVR 805 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + GRN+ GVR I +G+ ++ + ++ + + D+ +A S Sbjct: 806 TQCDQVSQL-GRNTQGVRIIRTKEGETLVRVERIVDSGEEGDKVAAAADDSAAVSVSTSV 864 Query: 768 DTEEITSLKNDSSVEGNISEE 788 D + + S ++ Sbjct: 865 DEYPASDNNDASESPVESGDD 885 >gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 840 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 379/891 (42%), Positives = 551/891 (61%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ I I EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EEKFSQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S+R +L+EG GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NP+I LM+ I+GPDFPT A ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHNLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRAKTTIEEHN-NKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R + +V+LN LY++T+LQS F +NM+A+ +P+ TL +L ++ + EVV Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DEV+ +IR S + E AR L+ R Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I +E N L +I E + Sbjct: 413 -----------------FGLSLEQAQAILDMRLRRLTGLEREKIEDEYNELLQKIAEYRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II +EL +++ RRT I G + DED I +E++V+T++H GY+K Sbjct: 456 ILANEQLVLKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+Q+RGG+G G+ +D DFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++ + +N Y+ FATK G V++ + D+I I Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIEVERFD---DNKYLFFATKQGIVKKTPIEDYINIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ ++++ T G +RFP S +R GR + GV+GI+L Sbjct: 633 KGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESDVRSM-GRAATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD VI M +V+ Sbjct: 692 DEGDSVIGMDVVVPG--------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+ G+GKRT ++R +R GKGI+ +V++ N G +V + V D Sbjct: 707 --------QDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKN--GTVVGLKVVKD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +++++ GTLIR + I R T+GV + + +D+ V +V R +S Sbjct: 757 EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTDKS 807 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 77/538 (14%), Positives = 173/538 (32%), Gaps = 43/538 (7%) Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + IV E K + + V R DL+ R + + Sbjct: 328 TFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVVRRRTEFDLKKAEARAHILEGLRIALD 387 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +VI + ++ + + + L L+ E + LL Sbjct: 388 HIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAILDMRLRRLTGLEREKIEDEYNELL 447 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 K + +AN V++II +E+ +R + + I Sbjct: 448 QKIAE-------YREILANEQLVLKIIGEEL------QEIRERYADERRTEITIGEESIL 494 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + + ++ T I L + R +++ Sbjct: 495 DEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHY 554 Query: 498 LGIIKQELLSVK---DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542 L + + E+ RT ++++ + + V+ V Sbjct: 555 LMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIEVERFDDNKYLFFA 614 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ P+ Y R+GG V +R++D + D+ + + V+ ++ G + Sbjct: 615 TKQGIVKKTPIEDYINIRKGG--LIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFP 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + ++L++G+ + V+ T +G +R + Sbjct: 673 ESDVRSMGRAATG---VKGITLDEGD------SVIGMDVVVPGQDVLIVTANGYGKRTPI 723 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R G + + ++ ++ ++ E D+++ T G +R + I GR Sbjct: 724 SEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIRTSMEGISTM-GR 782 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 N+ GV+ I++ + D V ++ ++ + E Q G + Sbjct: 783 NTQGVKLINIREDDTVATVCRTDKSEEEDQEGEAESSQDQGQAVEGHGSEPGQDPNEE 840 >gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY] gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis] gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis] gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195] Length = 821 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 387/889 (43%), Positives = 555/889 (62%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +NPDI + LME+I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ ++ V+ Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL +A+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV +EDED I RE++VVT++H GYV Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E LY+ F TKHG +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++ V I++ TK G +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LVAV Sbjct: 708 --------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ +N+I I R T+GV + A++E V +V + Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] Length = 880 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 416/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+DL + G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + EEI+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILTV++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5] gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5] Length = 821 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 387/889 (43%), Positives = 555/889 (62%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +NPDI + LME+I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ ++ V+ Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL +A+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV +EDED I RE++VVT++H GYV Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E LY+ F TKHG +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++ V I++ TK G +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LVAV Sbjct: 708 --------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ +N+I I R T+GV + A++E V +V + Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021] gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021] Length = 880 Score = 900 bits (2326), Expect = 0.0, Method: Composition-based stats. Identities = 413/905 (45%), Positives = 579/905 (63%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+DL + G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ ++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium] Length = 890 Score = 900 bits (2326), Expect = 0.0, Method: Composition-based stats. Identities = 428/889 (48%), Positives = 620/889 (69%), Gaps = 12/889 (1%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I + + +EM+ SYL YA++VI+ RA+PD+RDG K VHRRIL+ + ++G + K + K Sbjct: 8 DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I GEVMGKYHPHG++AIY+ + RMAQD+S+ + LI+GQGNFGS+DGD AA RYTE Sbjct: 68 SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K + +L DL +TV FRPNYDGS QEP VL R P++L+NG GIAVGMATNIP H Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++D C A+++NP ++L +ME ++GPDFPTG ILG +GI NA+ TGRGSIV+RG Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMRGK 247 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E+ GD+E IVVTEIPYQVNKA ++EKI EL R+K + I ++RDES+R G R+VIE Sbjct: 248 ASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVIE 307 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR ++ VILNQLY++T LQ FS N++AL P+ L L F+ FR +V+VRRT Sbjct: 308 IKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIVRRT 367 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KARD+AH+L+G A+A++++D+V+ +I+ + + ++A LM +W+A+ IK + L Sbjct: 368 RYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYLAL 427 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + G LSE+Q AIL+LRL +LTG+ +++I+++L S I+E +DIL Sbjct: 428 LQGPQAESGPY--YRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGK 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R+ I+ E ++K + TPRR+ I+ D+EDED I E+MVVT+S GY+KRVPL Sbjct: 486 PERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGGKGRSG+ M++ED+V D+ + +TH +LFF+++G VY+ V +LPIG+PQA Sbjct: 546 STYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQA 605 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G+A+IN+L + + E+IT+I+ ++ + ++F T G VRRN +SDF +I +GK Sbjct: 606 KGRAIINVLPIEKDEKITSILDVSKE--MDDASTLLFITSKGQVRRNAVSDFERIQSNGK 663 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AM L+ + +++V+TC +N +LL T+ G +RF + +RVF+GR S GVRGI LA D Sbjct: 664 RAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDD 723 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +IS +++ + D ER Y++ +A+R + + D++VEG +S+ER EL Sbjct: 724 TIISASVLEGFNVDPAERALYLRARAAERGIQG------ETEDQDTTVEGALSDERLLEL 777 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + EQ+ILT+++ GFGKRTS Y++R + R G G +S N G +V FPV DQI Sbjct: 778 QEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKN--GHVVNAFPVIPQDQI 835 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +L+++KG L+R VN+IRIA R T+GV++ KDERVV+V RI E+E Sbjct: 836 MLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEE 884 >gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505] Length = 899 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 410/936 (43%), Positives = 570/936 (60%), Gaps = 98/936 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A+I NPD+ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R Sbjct: 186 NLTEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VI Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RR Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L R W +++ +++ Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLE 425 Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + DG Y+SE Q +AIL+LRL +LTGL + I E +L Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLEL 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL++ RL+ +I+ EL+ +K++ RRT I D+ ED I E++VVT+S Sbjct: 486 IAELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK ++N+L L ERIT I+P E + Y+ AT G V++ L+ Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVREYA---EDKYIFMATAFGTVKKTPLT 662 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA----------- 712 + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF + Sbjct: 663 AYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNP 722 Query: 713 --------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 +R GR + GVRGI +A DQ + IV Sbjct: 723 VLDEEGNPEIRFKGVRPM-GRTATGVRGIKMA-DDQRVVSLIVPKT-------------- 766 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 + ILTV+E G+GKRT D+ Sbjct: 767 --------------------------------------DGAILTVTENGYGKRTQLEDYP 788 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T+ Sbjct: 789 SKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQ 846 Query: 879 GVVIFSTAKDERVVSVERIRESEIVD----EAESTE 910 GV++ T +E+VV ++RI E E+ + + E E Sbjct: 847 GVILIRTIDEEQVVGLQRIEEIEVTESDLIDIEDVE 882 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PL+ Y QR G + D D+ ++ F Sbjct: 641 YAEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNDGDSLIGVDI--TDGSNEIMLF 698 Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636 + G V + K G+P+ R K + + +G ++ Sbjct: 699 TDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRV 758 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693 + ++ T++G +R +L D+ +R+ + + + + + Sbjct: 759 VSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDN 818 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++I++ + G VR ++ + GRN+ GV I +QV+ + + + + I Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLID 877 Query: 754 YMKHMSAQRRLISGDTEEITSL 775 + + + S Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899 >gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] Length = 877 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 416/881 (47%), Positives = 604/881 (68%), Gaps = 16/881 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 +K I ++TDEM+ SYL+YA++VI+ RA+PD RDGLKPVHRRI+F M + G +W+K++ Sbjct: 3 DKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQFR 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L L++GQGNFGS+DGD AA RYTE Sbjct: 63 KSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A FL+ D+ K+TVDF+ NYD + EPVVL A+YPN+LVNG GIAVGMATNIP Sbjct: 123 TRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV++G + IDN +I + LM++I GPDFPTG +I+G+ I Y GRGSI IRG Sbjct: 183 HNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIIIGQNDIIPGYEKGRGSIKIRG 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E+ S D++ IV+ +PYQVNK ++EKIAEL+R+K+I I+DLRDES++ G R+ I Sbjct: 243 EIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVRIAI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +K+ S +I+NQLY+++ LQ+ F N +A+N KPE L +K FV FRE+V+ +R Sbjct: 303 TVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKKPELLNLKQFIKIFVDFREKVLTKR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+DR H+L+GL I++ N+DEV+ IIR S +P A+ L+++ W+ K ID Sbjct: 363 TLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSK--ID 420 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + + LS+ Q +AILELRL +LT +G ++I +EL L I + IL+ Sbjct: 421 KDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKILN 480 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L +IK EL +K + PRRT++V + +++ ED I E ++VTV++ GY+KR P Sbjct: 481 DKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTP 540 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L+ RAQ+RGGKG++G+V R+EDFV+ LF VST T VLFFSS G VY+ K W++P GS Sbjct: 541 LTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNT 600 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ++GKAL NI + +I++I+P P D+S+W + +++F T +G +R+N + DF I +G Sbjct: 601 SKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQANG 660 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAMKL+ D+I+SV+ + +D++L T G+ +R S IR+F GR+S G++GI+L Sbjct: 661 KIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNN 720 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VIS+ ++ H +E Y+K L+N IS ++ +E Sbjct: 721 DKVISLTVLNHVTTTSEETKAYIKRT------------RKDDLENTDDTNFEISTKKYEE 768 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 LKL+E+FILT++E G+GKR+SSY+FR S R G+GI S+ N G + A + V ++D Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERN--GNIAASYSVKNDDD 826 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 I+L+++KG +IR V++IRI R T+GV IF K+E+VVS Sbjct: 827 IMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVS 867 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 23/297 (7%) Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++ + I+ + + + L + T+ +++ F R+ K Sbjct: 457 GHEEINSELQDLYKLIVKYKKILNDKKELQNLIKTELAEIKK----KFAVPRRT-----K 507 Query: 678 LDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV- 735 L E + VE +E I+ T G R P+++IR R G GI + D V Sbjct: 508 LVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTPLTSIRAQK-RGGKGKTGIVTREEDFVS 566 Query: 736 ----IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +S + VL + + G + +I Sbjct: 567 QLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNTSKGKALANIFPIKADAQISSILPLPY 626 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + K+ F++ V+ G ++ S DF +GK A + + +V+V V N Sbjct: 627 DQSTWKDNFLIFVTANGKIRKNSILDFENIQANGK--IAMKL---EKDDKIVSVKIVKKN 681 Query: 851 DQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D ++L + G +R+ ++IRI R++KG+ + +++V+S+ + E Sbjct: 682 DDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEE 738 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 100/249 (40%), Gaps = 39/249 (15%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +++ ++ V+ G +++ + + + GK + + +D + + IV + V+ + Sbjct: 632 KDNFLIFVTANGKIRKNSILDFENIQANGKI--AMKLEKDDKIVSVKIVKKNDDVMLNTY 689 Query: 595 LGFVYKEKVWRLPIGS-PQARGKALINILS------------------------------ 623 G + ++ I ++G IN+ + Sbjct: 690 SGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEETKAYIKRTRKD 749 Query: 624 -LNQGERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 L + + + E +++ T++G +R+ +F + R G+ + + S Sbjct: 750 DLENTDDTNFEISTKKYEELKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISS 809 Query: 682 DEILSVET---CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 + ++ ++DI+L T GQ +R +S IR GRN+ GVR + K ++V+S Sbjct: 810 ERNGNIAASYSVKNDDDIMLITNKGQMIRCAVSDIR-ITGRNTQGVRIFKVEKNEKVVSS 868 Query: 739 AIVLHADAD 747 + + AD Sbjct: 869 VCLTDSVAD 877 >gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 894 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 382/894 (42%), Positives = 545/894 (60%), Gaps = 77/894 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K AH LL DL K+TVDF PNYDGS EP+V+ R PN+LVNG GGIAVGMATN Sbjct: 122 YTEIRLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD C+ ++ NP+ +D LM+II PDFPT +I G G+K+ Y TGRG +V Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E + + I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G Sbjct: 242 MRARCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EV Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLNHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A+AN+D+ +RIIR SP P A+ ELM R W++ ++ Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKLVR 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + +G+DG LSE Q + IL++RL RLTGL +D Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528 I E + EI++ LDIL+ +R+ II +EL VK E RR+ + D+ Sbjct: 482 IVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVEHSSFDLS 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I DMVVT+SH GY+K PL YRAQ+RGG+G+ +++D+V LF+ +TH Sbjct: 542 TEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDY 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+IT ++ E + + Y Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQY 661 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ VR Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GRN+ GVRG+ L +G VI+M + Sbjct: 722 FDENDVRPM-GRNARGVRGMMLDEGQSVIAMLVAED------------------------ 756 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 ++Q +LT +E G+GKRT+ ++ R KG+ Sbjct: 757 ----------------------------EQQSVLTATENGYGKRTNITEYTRHGRGTKGM 788 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 A S+ N G +VA V+ D+I+L++DKG L+R V+EIR RAT+GV Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMGRATQGVT 840 Score = 97.2 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 14/229 (6%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 T + ++ + G P+ R R G + + + D V + + D Sbjct: 545 LITPTDMVVTMSHSGYIKSQPLHEYRAQK-RGGRGKQATATKEDDWVDQLFVANTHDYIL 603 Query: 747 -----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 + + R + L+ + ++ + +Q++ Sbjct: 604 CFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQYVF 663 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 + G K+T+ +F SN GI A D+ + + L+ + ++L SD G Sbjct: 664 MSTSMGTVKKTALDEF--SNPRKAGIIAVDLDEGDF---LIGAALTDGKHDVMLFSDGGK 718 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +R N++R R +GV + + V+++ + E E +TE Sbjct: 719 AVRFDENDVRPMGRNARGVRGMMLDEGQSVIAM-LVAEDEQQSVLTATE 766 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 16/181 (8%) Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + L + D++++ MA + + + + + + + Sbjct: 469 MRLQRLTGLEQDKIVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGA 528 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 S VE + + ++L ++T+S G+ K +++R R G+G +AT + + Sbjct: 529 RRSLVEHSSFDLSTEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDD 588 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 + L F N +D I+ S++G L + V E+ SR ++G V +F + E++ Sbjct: 589 WVDQL---FVANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITV 645 Query: 894 V 894 V Sbjct: 646 V 646 >gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] Length = 821 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 381/893 (42%), Positives = 548/893 (61%), Gaps = 86/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +N DI + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+T +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A VILN LY+ T+LQ+ F +N++AL +P+ L L ++ ++ V+ Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E + Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKE 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV +EDED I RE++VVT++H GY+ Sbjct: 457 ILANEEKVLEIIREELTEIKERFNDKRRTEIVTAGLETIEDEDLIERENIVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ +DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + LY+ F TKHG +R LS F I Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---EKLYLFFTTKHGISKRTTLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V I++ TK G +RFP S +R GR + GV+GI+ Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ Sbjct: 693 LTDDDIVVGMEILED--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +L V+E G+GKRT + D+R +R GKG++ +++ N G LV V Sbjct: 708 --------DSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENN--GRLVTVKATK 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++ G LIR+ + +I I R T+GV + + E V +V + +++ Sbjct: 758 GEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALVEKND 810 >gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] Length = 821 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 382/889 (42%), Positives = 561/889 (63%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+ Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++++ II+ E+L +KD RRT I G+ +EDED I E+ VVT++H GY+ Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L++++GE++T ++ + + Y +F TK G +R +S F I Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFD---EDAYFIFTTKTGITKRTPVSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L D+++SV + I++ T+ G VRF IR GR + GVRGI Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M IV Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV V+ Sbjct: 709 ---------QEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVKTVD 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ I+L++ G LIR+ VN+I + R+T+GV + DE V +V ++ Sbjct: 758 GSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKV 806 Score = 92.2 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 K + R I + + + G I ++L E ++T++ G+ KR Sbjct: 459 ADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYIKR 518 Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 ++ +R R G+G++ ++ + + L+ + +D I+ + KG + R EI Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFRAKGYEIP 575 Query: 872 IASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 R KG V + + K E+V ++ R+ + Sbjct: 576 EYGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDED 610 >gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] Length = 880 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae 10810] Length = 880 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 414/905 (45%), Positives = 579/905 (63%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D + G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|167038685|ref|YP_001661670.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514] gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513] gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514] gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513] Length = 807 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 400/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +V Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE I Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIGQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V Sbjct: 692 EDDEVVEMDLVHPG---------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+EKGFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 706 -------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 96/237 (40%), Gaps = 21/237 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ I K +F +S + + + + L Sbjct: 383 IALDHIDEVINIIRSSKTEAI---AKQNLMDKFGLSE------KQAQAIVDMRLGRLTGL 433 Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +V + ++ + + + + + + ++ + +++ E Sbjct: 434 ERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELD 493 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++T++ G+ KR ++ R GKGI + + + +F Sbjct: 494 LEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTT 550 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +D+++ ++KG + + +I R KG V + + E+V +V +++S+ + Sbjct: 551 HDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPLKKSQDI 607 >gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] Length = 884 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 103/572 (18%), Positives = 194/572 (33%), Gaps = 68/572 (11%) Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288 + I ++ R +V R S E ++ + V ++ + E IA + Sbjct: 342 PRLFNLKEIIESFVLHRREVVTR-RSIFELRKARERTHILEGLA--VARSNIDEMIAIIR 398 Query: 289 REKRIVDIADLRDESDRQGYRVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347 K + A + +I L A D + L L + A+ Sbjct: 399 NSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILEL 458 Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407 + L E V++ + LL K D H+L ++ + ++ +IR Sbjct: 459 R---------LHRLTGIAFEEVIKEYEELLVKIADLLHIL-------SSAERLMEVIREE 502 Query: 408 PNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-----LS--EVQTRAIL 458 A+ + + AS DL DLI + Y L+ E Q R Sbjct: 503 LEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGK 562 Query: 459 ELRLARLTGLGRDDIRNELNSLGIE-------IKECLDILSSRSRLLGIIKQELLSVKDE 511 ++ + N+ L + G + ++++ Sbjct: 563 GKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPL 622 Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571 + R T I+ + VV + G VK++ L+ + R G + + Sbjct: 623 QENERITAILPV-------SAYEEDKFVVMATAGGIVKKIALTEFSRPRSNG--IIALNL 673 Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQ 626 RDED + + I ++ FSS G V + + + AL N +S ++ Sbjct: 674 RDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDE 733 Query: 627 GERITTIMP--------------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + ++ AT++G +R +LS++ +R+ Sbjct: 734 SAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNT 793 Query: 673 KIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 K + + ++++ + + I+L T G VR +S + GRN+ GVR I Sbjct: 794 KGVISIKVSERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRT 852 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 A + V+S+ V AD D DE + S + Sbjct: 853 ADDEHVVSLERVCDADEDEDEDDSLEESNSKE 884 >gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus influenzae F3031] gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3031] Length = 882 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866] Length = 880 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 416/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + EEI+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] Length = 821 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 380/892 (42%), Positives = 562/892 (63%), Gaps = 86/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY TGRGSI+ Sbjct: 183 IPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I++ E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ +++ II+ E+L +K+ + RRT I G+ +EDED I E+ VVT++H GY+ Sbjct: 457 ILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L++ +GE++T ++ + ++ Y +F TK G +R +S F I Sbjct: 577 FGRTAKGLPIVNLLNIEKGEKVTAMIRVASFD---DDAYFIFTTKTGITKRTPVSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L D+++SV E +++ T+ G VRF IR GR + GVRGI Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M IV Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV V+ Sbjct: 709 ---------QEILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKN--GPMVAVKTVD 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ ++L++ G LIR+ VN+I + R+T+GV + DE V +V ++ ++ Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKVEKA 809 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 6/162 (3%) Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 D K + R I E + G I ++L E ++T++ Sbjct: 452 DELKAILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLT 511 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+ KR ++ +R R G+G++ ++ + + L+ + +D I+ + KG + R Sbjct: 512 HNGYIKRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFR 568 Query: 865 VPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 EI R KG V + + K E+V ++ R+ + Sbjct: 569 AKGYEIPEFGRTAKGLPIVNLLNIEKGEKVTAMIRVASFDDD 610 >gi|297543508|ref|YP_003675810.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 805 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 399/890 (44%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 2 SEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RYT Sbjct: 62 KKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+R Sbjct: 182 PHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +VV Sbjct: 242 AKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV R Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK----------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AI+++RL RLTGL R + +EL L +IKE IL Sbjct: 410 ---------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGIL 454 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR+ Sbjct: 455 ADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRM 514 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 515 PLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGR 574 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R+ Sbjct: 575 QAKGTAIVNLIQIGQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKRN 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE+++ + E +I++ T G +RF IR GR + GV ISL + Sbjct: 632 GIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V Sbjct: 691 DDEVVEMDLVHPG----------------------------------------------- 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL V+EKGFGKRT ++R+ R+GKGI A +S+ + G LV++ VN D Sbjct: 704 ------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPED 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++S G LIR+ V+EI R T+GV + +RVVS RI E Sbjct: 756 EFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 70/166 (42%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ + + + + + + ++ + +++ E ++L E + Sbjct: 443 LMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVV 502 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T++ G+ KR ++ R GKGI + + + +F +D+++ ++KG Sbjct: 503 VTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTTHDRLLFFTNKG 559 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + + +I R KG V + + E+V +V +++S+ + Sbjct: 560 KVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPLKKSQDI 605 >gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] Length = 880 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 411/905 (45%), Positives = 577/905 (63%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNASDIKDLI----DLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW + + D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + EEI+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9] gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9] Length = 805 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 399/890 (44%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 2 SEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RYT Sbjct: 62 KKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+R Sbjct: 182 PHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +VV Sbjct: 242 AKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV R Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK----------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AI+++RL RLTGL R + +EL L +IKE IL Sbjct: 410 ---------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGIL 454 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR+ Sbjct: 455 ADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRM 514 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 515 PLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGR 574 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R+ Sbjct: 575 QAKGTAIVNLIQIAQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKRN 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE+++ + E +I++ T G +RF IR GR + GV ISL + Sbjct: 632 GIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V Sbjct: 691 DDEVVEMDLVHPG----------------------------------------------- 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL V+EKGFGKRT ++R+ R+GKGI A +S+ + G LV++ VN D Sbjct: 704 ------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPED 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++S G LIR+ V+EI R T+GV + +RVVS RI E Sbjct: 756 EFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805 Score = 84.1 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 71/166 (42%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ + + + + + + ++ + +++ E ++L E + Sbjct: 443 LMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVV 502 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T++ G+ KR ++ R GKGI + + + +F +D+++ ++KG Sbjct: 503 VTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTTHDRLLFFTNKG 559 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + + +I R KG V + A+ E+V +V +++S+ + Sbjct: 560 KVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSQDI 605 >gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7] gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7] gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208] gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3] Length = 819 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 383/889 (43%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV +NP+I + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R A+A VILN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ V+ Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+L II++EL +K+ + RRT IV +EDED I RE++V+T++H GYV Sbjct: 457 ILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVITLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P + LY+ F TK G +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVSTFD---EELYLFFTTKQGVSKRTALSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V + I++ TK G +RFP +R GR + GV+GI+ Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +L V+E G+GKRT + ++R+ +R GKG++ ++ N G LV V Sbjct: 708 --------DSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATR 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ +N+I R T+GV + + E V +V + Sbjct: 758 GEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806 >gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] Length = 844 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 369/899 (41%), Positives = 543/899 (60%), Gaps = 85/899 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE V I+ EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M MG+ +K Sbjct: 3 EETARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A + GEVM YHPHG+++IY+A+ RMAQD+++R +L+EGQGNFGSVDGDP AA RY Sbjct: 63 FRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R K A LL D+ K+TVDF PNYDG +EPVVL +R+PN+L+NG GIAVGMATNI Sbjct: 123 TESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVVDG +A+IDNPDI + LM+II+GPDFPT ILG +GI+ AY TGRGSI++ Sbjct: 183 PPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +I+VTEIPYQVNKA ++EKIAELVREK+I I DLRDESDR+G R+ Sbjct: 243 RAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R V+LN L+++T +QS F VNM+AL +P L +L ++ + ++ Sbjct: 303 VMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVIIR 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A RAH+L GL IA+ ++DE++ +IR S E AR LM+ Sbjct: 363 RRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLME----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS Q +AIL++RL RLTGL R+ I NE L ++I E I Sbjct: 412 ---------------NYSLSYEQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +++ II+ EL +K++ RRT I +ED D I ED+V+T++H GY+KR Sbjct: 457 LADEAKIYAIIRDELGEIKEKFGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S YR+Q+RGG+G G+ +D+DFV L+I ++H ++FF+S G VY+ K + +P S Sbjct: 517 LPVSTYRSQKRGGRGVQGLGTKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN++ + +GER++ ++P E + Y+ FATK G +++ L + I + Sbjct: 577 RTAKGTPIINLIQIEKGERVSAVIPVKEFD---QEHYLFFATKKGIIKKTTLESYENIRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ L DE++ V + I++ T G VRF +R GRN+ GV+GI+L Sbjct: 634 GGLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTM-GRNATGVKGITL- 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + + Sbjct: 692 ----------------------------------------------------DDDDDVID 699 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ +L V+ G+GKRT ++RI +R GKGI+ +V+ + G +V + V Sbjct: 700 MDVIKPNAEVLIVTANGYGKRTPVDEYRIQSRGGKGIKTHNVTDRS--GPVVGLKVVEPE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ G +IR + I + R T+GV + +++E+V SV + +E D + Sbjct: 758 EDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVAKCPPTEEEDMTDED 816 >gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 807 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 397/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + S + Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749 E+ ++ T G R P+ + R G+ GIS + D V + I D + Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + Y + ++ + ++I+ ++KG Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+TS +FR R+ GI A + + L+ V N +II+ + +G IR + Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFNEKD 674 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R KGV+ S +D+ VV ++ + + + Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708 >gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18] gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140] gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1] gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] Length = 916 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905] gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905] Length = 821 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 380/892 (42%), Positives = 563/892 (63%), Gaps = 86/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+ Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++++ II+ E+L +KD RRT I G+ +EDED I E+ VVT++H GY+ Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L++++GE++T ++ + + Y +F TK G +R +S F I Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFD---EDAYFIFTTKTGITKRTPVSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L D+++SV + I++ T+ G VRF IR GR + GVRGI Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M IV Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV V+ Sbjct: 709 ---------QEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVKTVD 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ ++L++ G LIR+ VN+I + R+T+GV + +E V +V ++ ++ Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATVAKVEKA 809 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 6/155 (3%) Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 K + R I + + ++ G I ++L E ++T++ G+ KR Sbjct: 459 ADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYIKR 518 Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 ++ +R R G+G++ ++ + + L+ + +D I+ + KG + R EI Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFRAKGYEIP 575 Query: 872 IASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 R KG V + + K E+V ++ R+ + Sbjct: 576 EYGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDED 610 >gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae] Length = 916 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 365/915 (39%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE+IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] Length = 916 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIRG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] Length = 807 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 397/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + S + Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749 E+ ++ T G R P+ + R G+ GIS + D V + I D + Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + Y + ++ + ++I+ ++KG Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+TS +FR R+ GI A + + L+ V N +II+ + +G IR + Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFDEKD 674 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R KGV+ S +D+ VV ++ + + + Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708 >gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1] gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1] Length = 896 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 392/909 (43%), Positives = 548/909 (60%), Gaps = 81/909 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K +H LL DL K+TVDF PNYDG+ P VL AR P +LVNG GIAVGMATNI Sbjct: 123 TEIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DGC+AVIDN DI +D L++ I GPDFPTGA I GR GI AY TGRG I + Sbjct: 183 PPHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGAFINGRAGIIEAYKTGRGRIYM 242 Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H E Q IV TEIPYQ+NKA ++EKIAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+RG + DV++N ++ T LQS+F +NMVAL +P+ + IL+ FV R EVV Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPQLLNIKQILECFVKHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+R H+L GLA+++AN+D V+ +IR SP A+ +++ SW D+ Sbjct: 363 TRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + DG +LS Q +AIL+LRL RLTGL D + E +L Sbjct: 423 MLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLI 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L+ILS+ RL+ +I++EL VK+ RRT I+ D+ D I MVVT Sbjct: 483 ELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ GY K PL Y+AQRRGG+G+S M+DED + L + S+H +++ FS+ G VY Sbjct: 543 ISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------FPEDESSWNN 645 +V+ +P+ S A+G+ ++N+L L +GE I+ ++P +D + Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSDDAIVEAS 662 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 Y+ AT +G V++ + F + +G IA+ LD DE++ V ENDI+L + G+ Sbjct: 663 SYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIMLVSSSGKT 722 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +RF S +R GR + GVRGI L + +V+S+ + A Sbjct: 723 IRFKESDVRAM-GRTAAGVRGIRLGEDAKVVSLIVPQDGSA------------------- 762 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 +L E G+GKRT DF + R G+ Sbjct: 763 ----------------------------------VLMACENGYGKRTLVEDFPVYGRGGQ 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ VS+ N G +V V++ D+IIL++D+GTL+R V E+ R T+GV + Sbjct: 789 GVIGIQVSERN--GPVVGAAQVDETDEIILITDQGTLVRTRVTEVSCQGRNTQGVTLIRL 846 Query: 886 AKDERVVSV 894 DE +V + Sbjct: 847 TNDEHLVGI 855 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 75/190 (39%), Gaps = 13/190 (6%) Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+++ ++ + + + R + +E + + + + Sbjct: 470 EHDKLLGEYKTLIELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLT 529 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + ++T+S G+ K +++ R G+G + + + I L + Sbjct: 530 IADLIDEAPMVVTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHL---LVTSS 586 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS------VERIRES 900 +D I+L S+ G + + V EI +ASR+ KG V + + E + + VE + Sbjct: 587 HDTIMLFSNFGKVYWLRVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEAD 646 Query: 901 EIVDEAESTE 910 D+ S + Sbjct: 647 SEADDDVSDD 656 Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 15/258 (5%) Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 D+ D+ + + + G VK+ + + R G + DE + + Sbjct: 651 DDVSDDAIVEASSYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSV--TN 708 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 ++ SS G + K + A A + + L + ++ +++ + Sbjct: 709 GENDIMLVSSSGKTIRFKESDVRAMGRTA---AGVRGIRLGEDAKVVSLI------VPQD 759 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701 V+ A ++G +R + DF R G+ + + + + + ++I+L T Sbjct: 760 GSAVLMACENGYGKRTLVEDFPVYGRGGQGVIGIQVSERNGPVVGAAQVDETDEIILITD 819 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G VR ++ + GRN+ GV I L + ++ + V+ D + E Sbjct: 820 QGTLVRTRVTEV-SCQGRNTQGVTLIRLTNDEHLVGIERVVEDDEEDVEIDEVDDTTVVD 878 Query: 762 RRLISGDTEEITSLKNDS 779 + G + Sbjct: 879 QAPNDGGESPDILDSDTE 896 >gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] Length = 916 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIRG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] Length = 848 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 436 Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S + Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Y Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG+ Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN+L L + E+I+ I+P + + +V AT G +++ L++F Q GKIA+ Sbjct: 617 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L VI Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 732 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ +V Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L+ Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 SDKGTL+R VNEI R T+GV + ++DE +V +E I I + Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 845 >gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] Length = 848 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPDDL 436 Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S + Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Y Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG+ Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN+L L + E+I+ I+P + + +V AT G +++ L++F Q GKIA+ Sbjct: 617 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L VI Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 732 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ +V Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L+ Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 SDKGTL+R VNEI R T+GV + ++DE +V +E I I + Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 845 >gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] Length = 868 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 460/870 (52%), Positives = 613/870 (70%), Gaps = 15/870 (1%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR G+VMGKYHPHG++AI Sbjct: 1 MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF Sbjct: 61 YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDG QEP VL AR+PN+LVNG GGIAVGMATNIP HNLGEVVD +A+ID+PD+ Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 + L+E + GPDFPTG V+LGR+G + AY GRGS++IR + +E+ DR IVV EIPY Sbjct: 181 EQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA+M+EKIAE VREKRI ++ ++DESDR G RVV+ELKR A+ +V+LNQL+R++ + Sbjct: 241 QVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSPM 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+A Sbjct: 301 QTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 V+N+DEVV IR S + AR++LM R W ASDI I LIDD ++ + D T LSE Q Sbjct: 361 VSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSETQ 420 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 RAILELRL RLT +G ++ +EL L +IKE LDILSSR R++ II EL V+++ Sbjct: 421 ARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQFA 480 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ Sbjct: 481 VPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKE 540 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 ED VT+LF+ +THT +LFF++ G VYK K WRLP +GKA++NIL + G I I Sbjct: 541 EDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAI 600 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETC 690 MP ++ W +L +VFAT G VRRN+LSDF + +GKIAMK + ++++ C Sbjct: 601 MPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHAETKLINARIC 660 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 ++E+D++L T G+ +RFP + +RVF RNSVGVRGI L G +V+SM++V H DA+ E Sbjct: 661 SEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSVVRHFDAEPWE 720 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 R ++K + +++ + EG +SE+R QE+ ++T+++ G G Sbjct: 721 RSAFIKRFRGELG------NDVSDEETSEENEGALSEDRYQEMLAANDLLVTINKAGAGN 774 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 TS++D+R+S R G+G+ A G +VA FPV DQI+L + KG IRVPV+ I Sbjct: 775 LTSAHDYRVSGRGGQGVGAMK------GGEIVATFPVTLEDQIMLATSKGQSIRVPVDGI 828 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900 SR+ GV +F+T K E VVSV I E+ Sbjct: 829 SFRSRSAGGVRVFNTGKGEEVVSVAWIAEN 858 >gi|167036442|ref|YP_001664020.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 807 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 398/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGSVDGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + S + Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749 E+ ++ T G R P+ + R G+ GIS + D V + I D + Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + Y + ++ + ++I+ ++KG Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+TS +FR R+ GI A + + L+ V N +II+ + +G IR + Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFNEKD 674 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R KGV+ S +D+ VV ++ + + + Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708 >gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20] gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20] gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] Length = 880 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 413/905 (45%), Positives = 578/905 (63%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A ID +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D + G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 824 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 374/896 (41%), Positives = 540/896 (60%), Gaps = 86/896 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+ N+ K Sbjct: 10 NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I+G+VMGKYHPHG++AIYD+L RMAQ +++R L++GQGNFGSVDGDPPAA RYTE R Sbjct: 70 AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LL+D+ K+TVDF+PNYD + EP VL R PN+LVNG GIAVGMATNIP HN Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+++ + +I +P +L +ME ++GPDFPTG ILGR GI +A+ GRG + +R + Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGRGQLKLRAKA 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK DREQI+VTEIPYQVNK+ ++E + LV EK++ I D+RDESDR G R+V EL Sbjct: 250 AIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG A+VILN LY++T LQ F + M+++ +P L+ ++K F+ R EVV RRT+ Sbjct: 310 KRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHRIEVVRRRTE 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDR H+L+G A+ +LDEV+R+IR S +P+ AR L+ Sbjct: 370 YELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLIT--------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T S+ Q +AI+EL+L RLTG+ R I +EL + I E ++IL S Sbjct: 415 -----------TFQFSDKQAQAIIELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSD 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L +I +EL V+ RRT+I+E ++ ED + ED+ +TV+ GY+KR + Sbjct: 464 KVLRDLIIKELKEVQKNYGDERRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSVD 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKGR G+ R EDFV L + STH+ +L F++ G VY K + +P + + Sbjct: 524 TYRRQTRGGKGRIGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGK 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK L N+++L E + + N Y+V TKHG +++++L++F G I Sbjct: 584 GKHLTNLINLQGDEEAKAFLSVKDFV---ANQYIVMVTKHGVIKKSELTEFDNPLSRGII 640 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE++ + +N I L + GQ +RF +R GR + GVR +SLA GD Sbjct: 641 AVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAM-GRQARGVRAMSLADGDY 699 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ M +V Sbjct: 700 LVGMEVVEKDG------------------------------------------------- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL+++E G+GKRT D+R+++R GKG+ + N+ G +V + V ++ +++ Sbjct: 711 ----LILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTT--NKTGRVVGILSVKEDSELM 764 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAEST 909 +VS G +IR+ + IR A R+T+GV + + D++V + I ES++V D+ + T Sbjct: 765 IVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVIPESDVVPDDGQET 820 >gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] Length = 865 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 399/910 (43%), Positives = 553/910 (60%), Gaps = 71/910 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + + + V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MADT----PTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR L++GQGNFGSV Sbjct: 57 NELNNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG Sbjct: 117 DGDSAAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN+ EV+ GC+A +DN DI +D LM+ I GPDFPTGA+I GR GI A Sbjct: 177 GIAVGMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAIINGRAGIVQA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + + S ++ I+V EIPYQ+NKA ++E+IAELV+EK+I I +LR Sbjct: 237 YRTGRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G RVVIEL+RG DV+LN LY T+LQS+ +NMVAL +P+ L ++ A Sbjct: 297 DESDKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQPKVLNLKEMIAA 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT YLL KAR+R HVL GLA+A+AN+DEV+ +I+ SP AR L+ Sbjct: 357 FVRHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDA 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472 +W D+ +++ ++ +G +LS Q +AIL+LRL RLTGL + Sbjct: 417 AWAPGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEK 476 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E EI + LDIL RL +I++EL E R T I + D+ ED Sbjct: 477 LLQEYADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVEDL 536 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I ED VVT+SH GY K PL+ Y+AQRRGG GRS ++DEDFV L I STH+++L F Sbjct: 537 ITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHSTILCF 596 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+LG VY +V+ +P+ S +RG+ ++N+L L+ GER+T+I+P E Y+ AT Sbjct: 597 SNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYE---AGSYIFMAT 653 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ +++ F + G A++L+ D ++ D++L + G+ VRF +A Sbjct: 654 AKGTVKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFNEAA 713 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI L +IS+ I Sbjct: 714 VRPM-GRTAKGVRGIRLGGDYSLISLII-------------------------------- 740 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ ILTVSE G+GKR+ + DF + R G+ A Sbjct: 741 ---------------------PKQQGRILTVSENGYGKRSETADFPVRGRGTMGVIAMST 779 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S N GALV V D D+I+L+S++GT +R ++EI + R T+GV + T +E +V Sbjct: 780 SDRN--GALVGAEQVWDGDEIMLISNQGTAVRTRIDEISLQGRNTQGVRVIRTRDEESLV 837 Query: 893 SVERIRESEI 902 S+ RI E + Sbjct: 838 SISRIAEDDD 847 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 15/229 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ ++ + QR G + + + D + + V+ FSS G Sbjct: 648 YIFMATAKGTVKKTEMTQFARQRSVG--LRAIELEEGDHLVGTAVTDGSCDVMLFSSEGK 705 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A+G I R+ ++ +++G Sbjct: 706 AVRFNEAAVRPMGRTAKGVRGI---------RLGGDYSLISLIIPKQQGRILTVSENGYG 756 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R++ +DF R + + + D + E ++I+L + G VR I I Sbjct: 757 KRSETADFPVRGRGTMGVIAMSTSDRNGALVGAEQVWDGDEIMLISNQGTAVRTRIDEI- 815 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 GRN+ GVR I + ++S++ + D + Sbjct: 816 SLQGRNTQGVRVIRTRDEESLVSISRIAEDDDATGDAAPVSAPPDEDTE 864 >gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] Length = 821 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 384/890 (43%), Positives = 553/890 (62%), Gaps = 86/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ + Sbjct: 2 NEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA Sbjct: 62 KAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP H LGE++DG +AV +NPDI + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 182 NIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G Sbjct: 242 TIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ L L+ ++ ++ V Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 362 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 ------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELK 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547 DIL++ ++L II++EL +K+ + RRT IV +EDED I RE++VVT++H GY Sbjct: 456 DILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLETIEDEDLIERENIVVTLTHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 516 IKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P E LY+ F TKHG +R LS F Sbjct: 576 EYGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE++ V +++ TK G +RFP + +R GR + GV+GI Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D V+ M I+ Sbjct: 692 TLTDDDVVVGMEILEE-------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LV V Sbjct: 708 ---------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVTVKAT 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ +N+I I R T+GV + A++E V +V + Sbjct: 757 KGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] Length = 850 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S + Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Y Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG+ Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN+L L + E+I+ I+P + + +V AT G +++ L++F Q GKIA+ Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L VI Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ +V Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L+ Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 SDKGTL+R VNEI R T+GV + ++DE +V +E I I + Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847 >gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] Length = 850 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 381/888 (42%), Positives = 547/888 (61%), Gaps = 67/888 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S + Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Y Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG+ Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN+L L + E+I+ I+P + + +V AT G +++ L++F Q GKIA+ Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L VI Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ +V Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L+ Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 SDKGTL+R VNEI R T+GV + ++DE +V +E I I + Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847 >gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] Length = 850 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S + Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Y Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG+ Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN+L L + E+I+ I+P + + +V AT G +++ L++F Q GKIA+ Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L VI Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ +V Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L+ Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 SDKGTL+R VNEI R T+GV + ++DE +V +E I I + Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847 >gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] Length = 916 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] Length = 809 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 386/892 (43%), Positives = 549/892 (61%), Gaps = 85/892 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKP+HRRIL+ M ++ + ++ Sbjct: 3 ELGGKVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A I G+VMGKYHPHG+AAIYDA+ R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 HRKSATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DG V +I+NPD+ LM I+GPDFPTG +ILGR GI+ Y TGRGSI++ Sbjct: 183 PPHNLSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G +++IVVTEIPY VNKA ++EKIAELVR+K + I+DLRDESDR G R+ Sbjct: 243 RAKATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A VILNQLY++T +Q F M+AL KP+ TL ++ ++ ++EVVV Sbjct: 303 VIELKRDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVV 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L +A +R H+L GL IA+ +LDEV+ +IR S + TAR LM+ Sbjct: 363 RRTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMK----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E Q + IL++RL RLT L R I +E L +I + Sbjct: 412 ---------------NFGLTEKQAQVILDMRLQRLTALERQKIEDEYRELLEKIDYYKRV 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + IIK+ELL +K+ RRTRIV + D +++D I ED+V+T++++GYVKR Sbjct: 457 LGDEKLVFAIIKEELLKIKERFGDERRTRIVAEVKDFDEQDLIPEEDVVITMTYMGYVKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS YR+Q+RGGKG +G+ R+EDFV + + +TH VLFF++ G VY+ K +P Sbjct: 517 MPLSSYRSQKRGGKGVTGITTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAG 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G A++N+L L E++ ++P + Y+V TK G V++ LS++ + Sbjct: 577 RTAKGTAIVNLLPLKPQEKVNAVIPIKDFG---EASYLVMVTKRGLVKKTLLSEYESSRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L S DE++ V+ ++++++L T G +RF + + GR + GV+ I+L Sbjct: 634 TGIIAITLTSGDELIGVKLVGKKDELILGTSHGMSIRFSVEDVTP-TGRTARGVKAITLG 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V SM + Sbjct: 693 EGDEVASMDVTSVGSD-------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKGFGKRT ++RI R G+GI V+ + G LV + V + Sbjct: 709 ---------VLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVT--DTTGRLVGLRVVAEG 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 D IIL + G +IR+ V+ I SR T+GV + + ++V +V IRESE Sbjct: 758 DDIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESED 809 >gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 912 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 366/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + + + + + R Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E +LT + G+GKRT D+ N+ G+G Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882 Query: 889 ERVVSVERIRESEIVDEAESTE 910 E +VS+ER+ E E + TE Sbjct: 883 ETLVSLERVAEEETETDMPETE 904 >gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] Length = 935 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 384/934 (41%), Positives = 550/934 (58%), Gaps = 106/934 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 EVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF NYDG+ + P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDGC+A+ID+ + D LME I+GPDFPT +I GR GI AY TGRG + +R + Sbjct: 187 LGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE +E I+VTEIPYQVNKA ++EKIAELV++K+I I +LRDESD++G RVVIE Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +A+V+LN LY+ T ++S+F +N VAL +P+ L +L AF+ R EVV RRT Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR++AH+L GLA+A++N+D V+ +I+ SP+ A+ +L+ + W D+ +++ Sbjct: 367 VFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLER 426 Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + DG +LS Q +AIL+LRL +LTGL R+ + N+ L +I Sbjct: 427 AGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL + RL+ +I++EL +V++E RR+ IV D ED I E +VVT+S+ Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K P+ YRAQ+RGG+G+S ++DED+V L + TH ++L F+ G V+ + + Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDAGKVFWLRTF 606 Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNN------------------ 645 LP G +RGK ++N+L L ERIT I+ + Sbjct: 607 ELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVIDAV 666 Query: 646 ---------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ AT G V+R L++F + SG IA+KL + + Sbjct: 667 DDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHL 726 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 ++V DI+L + G+ VRF S +RV + R + GVRGI LA+G +IS+ + Sbjct: 727 VNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDLISLIV---- 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + ILT S Sbjct: 782 -------------------------------------------------PEENGQILTAS 792 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 E G+GKRT D+ R G+G+ A +++ N G LV V + I+L+S++GTL+R Sbjct: 793 EHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLVR 850 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VN++ + R T+GV + A E + + I Sbjct: 851 TGVNQVSTSGRNTQGVRLIRLADGEALCGLATIP 884 Score = 96.4 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701 VV + G + + + R GK A +L D + + + +LL T Sbjct: 537 EETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTD 596 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHM 758 G+ + GR S G ++L ++ I+ + L A+ ++ + Sbjct: 597 AGKVFWLRTFEL-PQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEE 655 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF- 817 + ++ + + VE FI + G KRT+ +F Sbjct: 656 IVDADDVIDAVDDEADSEVEGDVETVAETV-------PGPFIFMATSSGIVKRTALANFA 708 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R + G+ A + + LV V ++ I+LV+ G +R +++R+ SR Sbjct: 709 RPRS---SGLIAVKLQEGE---HLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLA 762 Query: 878 KGVVIFSTAKDERVVSVERIRES 900 +GV A+ ++S+ + E Sbjct: 763 RGVRGIKLAEGVDLISL-IVPEE 784 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 106/244 (43%), Gaps = 15/244 (6%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VKR L+ + R G V +++ + + ++ I H ++ + G Sbjct: 688 PFIFMATSSGIVKRTALANFARPRSSG--LIAVKLQEGEHLVNVAITQGHEDIMLVARNG 745 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + ++ + S ARG + + L +G + +++ N ++ A++HG Sbjct: 746 KAVRFHQSKVRVMSRLARG---VRGIKLAEGVDLISLI------VPEENGQILTASEHGY 796 Query: 657 VRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+D+ R G IAM ++ E++ E DI+L + G VR ++ + Sbjct: 797 GKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQV 856 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 +GRN+ GVR I LA G+ + +A + + +E + + + + +++ Sbjct: 857 -STSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEEGEDGEVIEGEASPQAPESDASD 915 Query: 774 SLKN 777 + Sbjct: 916 DAEE 919 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 7/164 (4%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A+ + + + + R E + + S + + + ++L +E + Sbjct: 482 LLEQIAELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVV 541 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S G+ K +R R G+G A + + + L +D ++L +D G Sbjct: 542 VTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHL---LVAGTHDTLLLFTDAG 598 Query: 861 TLIRVPVNEIRIASRATKGVVIFS----TAKDERVVSVERIRES 900 + + E+ RA++G I + +ER+ ++ R+ Sbjct: 599 KVFWLRTFELPQGGRASRGKPIVNLLPALGNEERITAILRLDAE 642 >gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis] gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis] Length = 916 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 368/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915 >gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] Length = 854 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 389/887 (43%), Positives = 551/887 (62%), Gaps = 86/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ I + I EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L DL K+TVDF PNYDG EPVVL ARYPN+LVNG GGIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I+NPDI LM+ I+GPDFPT ILGR+GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ ++ +I+V E+PYQVNKA ++EKIAELVR+KRI I DLRDESDR G R Sbjct: 243 MRAKTTIEEIG-NKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R + +V+LN L+++T++QS F +NM+A+ +P+ L +L ++ + EV+ Sbjct: 302 VVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ Q++AIL++RL RLTGL R+ I NE N L +I E + Sbjct: 413 -----------------FSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II +EL +K+ RRT I G + DED I RED+++TV+H GY+K Sbjct: 456 ILANEHLVLNIISEELNELKERFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+Q+RGG+G G+ +DEDFV LFI ++H +LFF+ G VY+ K + +P Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P E + Y+ FAT+HG +++ L D+ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPIEEFV---EDSYLFFATQHGIIKKTPLDDYANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + ++++ T G +RFP S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGINL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D VI M IV + Sbjct: 692 DESDAVIGMDIVDTSLD------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 IL V+ KG+GKRT D+RI +R GKGI+ +V+ N G +V + V Sbjct: 709 ----------ILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKT 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + +++++ GTLIR + EI R T+GV + + D+ V +V R Sbjct: 757 EEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803 >gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846] Length = 882 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 415/905 (45%), Positives = 580/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRAGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] Length = 882 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 416/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA + + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RIRES 900 R+ ++ Sbjct: 863 RVCDA 867 >gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710] gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568] gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304] gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399] gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385] gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196] Length = 916 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 368/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] Length = 815 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 363/894 (40%), Positives = 538/894 (60%), Gaps = 81/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 I + I DE++NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 NFTHGKIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ GEV+GKYHPHG+ A+YDA+ R+AQ++S R L++G GNFGSVDGD AA R Sbjct: 62 PHKKSARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L ++ K+T+DFRPN+D + +EP VL AR+PN+L+NG GIAVGMATN Sbjct: 122 YTEARMSKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVVD V +IDNP+ + +M+ I GPDFPTG +ILGR GI++AY TGRG I Sbjct: 182 IPPHNLREVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIK 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+ + +IVVTE+PYQVNKA +EKIA+LVREK++ I DLRDESDR G R Sbjct: 242 IRAKTQIERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR +A V+LNQ++++T LQ F + M+AL KP+ L +L ++ +++V+ Sbjct: 302 IVIELKRETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA +RAH+L GL IA+ NLD V+++IR S N E AR LM+ Sbjct: 362 TRRTRFDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLME---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+++Q +AIL++RL +LTGL R + +E L +I + Sbjct: 412 ----------------NFGLTQIQAQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ + IIK E+ ++ + RRT IV D ED I EDMVVT++H GY+K Sbjct: 456 ILANERLVYQIIKDEMGEIRKKYGDDRRTAIVIDEDDFAVEDLIAEEDMVVTLTHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR Q+RGG+G +G+ + +DFV +F+ STH + F++ G +Y++KV+ +P Sbjct: 516 RLPVTTYRVQKRGGRGITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPES 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 RG A++N+L++ GE +T ++P + ++ T+ G V++ L +FI Sbjct: 576 GRTTRGVAIVNLLAVEPGEYVTAVIPVKDFN---AGQFMFMCTRQGYVKKTPLEEFINAR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L DE++ V + ++ L T G +RF +R GR++ GVRGISL Sbjct: 633 KGGLIALSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSM-GRSARGVRGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD+V+S+ ++ Sbjct: 692 GPGDKVMSLEVLPPE--------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E +L V+EKGFGKRT ++R R GKGI + + N G ++ V Sbjct: 707 ----MEQETEMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKN--GPVMGAKMVRP 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D++++++ +G +IR +I I R T+GV + + +RVVS+ R+ E Sbjct: 761 GDEVMMITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARVVVEENE 814 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 18/292 (6%) Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 L E I I E ++ +Y + + G +R+ + + A+ + Sbjct: 436 RQKLEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRK-------KYGDDRRTAIVI 488 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 D D + + +E+ ++ T G R P++ RV R G+ G+S D V + Sbjct: 489 DEDDFAVE-DLIAEEDMVVTLTHNGYIKRLPVTTYRVQK-RGGRGITGMSTKGDDFVEHV 546 Query: 739 AIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + D + Y K + ++ + Sbjct: 547 FVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRGVAIVNLLAVEPGEYVTAVIPVKDFN 606 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 QF+ + +G+ K+T +F I+ R G G+ A +++ L+ V N ++ L Sbjct: 607 AGQFMFMCTRQGYVKKTPLEEF-INARKG-GLIALSLAE---NDELIDVRLTNGKYEVAL 661 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V+ G IR +R R+ +GV S ++V+S+E + E+ E E Sbjct: 662 VTYHGLSIRFAEENVRSMGRSARGVRGISLGPGDKVMSLEVLPP-EMEQETE 712 >gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] Length = 866 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 381/891 (42%), Positives = 549/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ + Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + SDG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II +EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ +INI L +GE+IT ++P E + +V T G V++ L F Sbjct: 601 PQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMGTALGTVKKTPLEAFG 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ + Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 783 VDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + L + D++I V+ AD + + + ++A + S Sbjct: 454 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSK 513 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N +E ++L ++ ++T+S G+ K ++ R G+G +AT + + + I Sbjct: 514 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 573 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897 L F N +D I+ S++G + V V E+ SR ++G I + + E++ V + Sbjct: 574 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 630 Query: 898 RE 899 +E Sbjct: 631 KE 632 Score = 68.7 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 14/245 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + LG VK+ PL + R KG V + D D++ I V+ F Sbjct: 633 FSADKFVFMGTALGTVKKTPLEAF--GRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 690 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + +ARG + + L G+ + ++ + V+ AT Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ QE I+L T G +R Sbjct: 743 ENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTR 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S IR GR + GV ISL +G ++ + V A+A+ D SG Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDSGGE 861 Query: 770 EEITS 774 E + Sbjct: 862 EGGAA 866 >gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153] Length = 916 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900] gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978] gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] Length = 904 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 380/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + E+ + Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904 >gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013] Length = 916 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 368/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] Length = 893 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 368/905 (40%), Positives = 538/905 (59%), Gaps = 41/905 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL + +L D+ +TVDF N+DGS QEP+VL +R P +LVNG GIAVGMATNI Sbjct: 124 ECRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV++G +A+I NP+I LM+ I GPDFPTGA ILG+ I+ AY TGRGSI + Sbjct: 184 PPHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE D+E I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR Sbjct: 244 RGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ +L L F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR + + TA++EL+ Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELI-------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 T LSEVQ+ AIL+++L RLT L I E L +I + Sbjct: 416 ------------------DTYGLSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R R+L II+ E+ +K + +PRRT I ++++ D I E ++ ++ G Sbjct: 458 LLDILAKRERILEIIQTEVAEIKLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ R +G++G M+++D V H SVLFFS G VY + +++ Sbjct: 518 YIKRMPVSTFEAQSRATRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG ++ +L + E+IT+I+ E N Y++ T+ G +++ LS F Sbjct: 578 PVSSRTARGTPIVQLLPIPIEEKITSIVSVTEFS---NEEYLIMLTRSGFIKKTVLSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGV 724 I +G IA+ L+ D++ V ++ I++ ++ G + F +R GR + GV Sbjct: 635 NIRANGLIAISLEEGDQLRWVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPV-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L GD++I M I+ + + + L E ++ + Sbjct: 694 KSMKLRAGDELIGMDILPSSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDA- 752 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + + L ++ G+GKR FR+ R+GKG+ AT + A+ Sbjct: 753 ---EEIPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAAL 809 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN+ND++++V+ +G +IR VN I SR GV + +D+ +V+V + S Sbjct: 810 RIVNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSGEES 869 Query: 905 EAEST 909 E++ Sbjct: 870 ESDEA 874 >gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] Length = 916 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 544/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] Length = 904 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 376/899 (41%), Positives = 545/899 (60%), Gaps = 45/899 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S + LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D + + + DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNEDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADLNVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV ++++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871 >gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] Length = 904 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 379/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D + + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSSLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + + E+ + Sbjct: 880 LEGEVDTTETDSEEVVSNNEDTSEE 904 >gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640] gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica] gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06] Length = 912 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 366/922 (39%), Positives = 543/922 (58%), Gaps = 30/922 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + + + + + R Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E +LT + G+GKRT D+ N+ G+G Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882 Query: 889 ERVVSVERIRESEIVDEAESTE 910 E +VS+ER+ E E + TE Sbjct: 883 ETLVSLERVAEEETETDMPETE 904 >gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis] gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis] Length = 916 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915 >gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum marinum IMCC1322] gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 900 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 452/889 (50%), Positives = 614/889 (69%), Gaps = 61/889 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ MM+ +W K K ARI Sbjct: 20 ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG+++IY+A+ RMAQD+S+RL L++GQGNFGSVDGDP AA RYTE RL +A Sbjct: 80 GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV+F NYD + EP VL A YPN+LVNG GIAVGMATNIP HN GEV Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + C A ++NP+I + L EI+ GPDFPTGA+I+GR GI+ AY TGRGSI++R + ++ Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIMGRHGIREAYRTGRGSIIMRARAEVQT 259 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + DRE I+V EIPYQVNKA +LE+I E+VR+K + I+D+RDESDR G R+VIE+KR A Sbjct: 260 NAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRDA 319 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LN+LYR+T LQ+ F VNM+A+N +P + L +++AF FR++VV++RT +LLN Sbjct: 320 AGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQMGLKDVIEAFCEFRKDVVIKRTTFLLN 379 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+RDRAH+L GL +A+A++DE++ +I+ +P+ ETAR EL +W A ++ I LIDD Sbjct: 380 KSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDDPG 439 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + D LSEVQ RAILELRL RLTG+ RD + E L +I + LDIL S +R+ Sbjct: 440 HAV-VDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRVS 498 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +I EL + ++ L RRT I + L D +DED I +EDMVVTVSH GY+KRVPLS+YRA Sbjct: 499 QVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYRA 558 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKGR+G+ RDEDFVT LF+ +THT +LFF+S G VY+ K ++LP +PQ+ GKA+ Sbjct: 559 QRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKAM 618 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L + E I T+MP P+DESSW +L V+FAT GNVRRN LSDF I R+GKIAMK+ Sbjct: 619 VNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMKM 678 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE++ V C ++D+L+ T+ G+ +RF +A+RVF GR+S GVRGI L D+V+SM Sbjct: 679 QDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSM 738 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +I+ + + Sbjct: 739 SIIADPE---------------------------------------------------NE 747 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +IL+V+E G+GKRT D+R S R G+G+ ++S N G ++A F V + DQ++LV++ Sbjct: 748 YILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRN--GQVMASFTVVEEDQLMLVTN 805 Query: 859 KGTLIRVPV-----NEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900 +G +IR+ V + IRIASR T GV +F A DE+VVS I ES Sbjct: 806 QGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVSAGLIHES 854 >gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida] Length = 922 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 388/905 (42%), Positives = 565/905 (62%), Gaps = 29/905 (3%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMA NIP HN Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+V+GC+A+I+N ++ +D LM I GPDFPTGA+I GR GI AY TGRGS+ +R + Sbjct: 187 LTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKA 246 Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E + I+V E+PYQVNKA ++EKIAELV+EK++ I+ LRDESD+ R+VI Sbjct: 247 EVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIVI 306 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S +++LN LY++T LQ+ F +NMVAL+ +P+ L IL AF+ R EVV RR Sbjct: 307 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRR 366 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ +L+ R W ++ +++ Sbjct: 367 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 426 Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + +G +L+E Q +AIL+LRL +LTGL I E SL I Sbjct: 427 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL+S RL+ +I+ ELL+V+++ R I ++ ED I ED+VVT+SH Sbjct: 487 AELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDLITPEDVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y AQRRGG+G+S +++E+FV L + +TH ++L FS+ G VY KV+ Sbjct: 547 QGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKVYWLKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ +IN+L L +GERIT I+P E ++ YV FAT G V++ LS Sbjct: 607 QLPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLSA 663 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG A+ L DE++ V+ N+I+L + G+ VRF + Sbjct: 664 FSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPM-------- 715 Query: 725 RGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 + + L D V I D D + + ++ T+ Sbjct: 716 QPM-LMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIR 774 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 N + + E ILT +E G+GK T+ ++ +R +G+R+ V + + Sbjct: 775 LLNGDKVVSLIVPRGEGAILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGK---- 830 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V++ V+D DQI+L+++ GTL+R V+E+ I R T GV + T +DE VV ++RI ES Sbjct: 831 VSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESY 890 Query: 902 IVDEA 906 + Sbjct: 891 EEEND 895 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCV 706 ++ AT++G + L+++ +R + + D +S++ + I+L T G V Sbjct: 793 ILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGKVSIDQVDDTDQIMLITNGGTLV 852 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R +S + GRN+ GVR I + + V+ + + + + ++ + +S Sbjct: 853 RTRVSEV-SIIGRNTGGVRLIRTGEDETVVGLQRIAESYEEENDVMAIDGEVSEGTDTAP 911 Query: 767 GDTEEITSLKN 777 + Sbjct: 912 DAGSAAADPEE 922 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 14/272 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ LS + G + +++ D + + I ++ F Sbjct: 641 YADDKYVFFATADGTVKKTSLSAFSRPLSSG--IRAINLKEGDELIGVDITDGSNEIMLF 698 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + P + +++ D+ +N +T Sbjct: 699 SDAGKVVRFNEGSAAPMQPMLMSSD-------DVDGDDESVIDAGNDDDGSDNGEGSEST 751 Query: 653 -KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G + + G ++L + D+++S+ E IL T+ G ++ Sbjct: 752 ESKGTFKGVRPMG---RTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKGTALT 808 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R + GVR I + + +V + + I G Sbjct: 809 EY-PTKSRGTQGVRSIKVDEDGKVSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTG 867 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 L E + +R E +E ++ + Sbjct: 868 GVRLIRTGEDETVVGLQRIAESYEEENDVMAI 899 >gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis] gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis] gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis] gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis] Length = 916 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915 >gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355] Length = 916 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis] Length = 916 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915 >gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica] Length = 912 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++++DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 RSW +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + + + + + R Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E +LT + G+GKRT D+ N+ G+G Sbjct: 765 SGGMRGMRLPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882 Query: 889 ERVVSVERIRESEIVDEAESTE 910 E +VS+ER+ E E + TE Sbjct: 883 ETLVSLERVAEEETETDMPETE 904 >gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] Length = 904 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D + + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVDLEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSNLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEF 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + + E+ + Sbjct: 880 LEGEVDTTETDSEEVVSNNEDASEE 904 >gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] Length = 916 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 367/921 (39%), Positives = 543/921 (58%), Gaps = 30/921 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 RSW +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + + + + + R Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E +LT + G+GKRT D+ N+ G+G Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882 Query: 889 ERVVSVERIRESEIVDEAEST 909 E +VS+ER+ E E E Sbjct: 883 ETLVSLERVAEDEDESELSDA 903 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 105/270 (38%), Gaps = 40/270 (14%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D + ++ F Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQG--IKAIALKEGDSLIGAAQTGGSDDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQ-------------ARGKALINILS---------------- 623 S+LG + + G+ + N L Sbjct: 709 SNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGM 768 Query: 624 ----LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 L +I +++ F + + L V+ AT +G +R ++D+ + N+ G+ + ++ Sbjct: 769 RGMRLPADGKIVSLITFAPEAGE-SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 827 Query: 680 SRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 + + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ ++ Sbjct: 828 TGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLV 886 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLIS 766 S+ V + + + + + + + Sbjct: 887 SLERVAEDEDESELSDASVISGATEPEAEN 916 >gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594] Length = 916 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052] gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052] Length = 828 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 555/903 (61%), Gaps = 91/903 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ K Y Sbjct: 4 NEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++DG + +IDNP+ + LM I GPDFPTGA I+G+ GI+ AY TG+G I++R Sbjct: 184 PHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKIIVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R I+VTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+V Sbjct: 244 ANAEIEE-ENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ V+LN LY++T LQ F + M+AL +P+ L IL+ +V F++EV+ R Sbjct: 303 IELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM+R Sbjct: 363 RTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AILE+RL RLTGL R I E N L +I+ IL Sbjct: 412 ---------------FELSEKQSQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +LL +IK+ELL +K+ R+++I + + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEEKLLDVIKEELLEIKNRYSDERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV L I STH+ VLFF++ G VYK + + + Sbjct: 517 SADTYSSQRRGGKGIQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G LIN++++ E+I T++ +++ ++ TK G V++ LS+F + ++ Sbjct: 577 QAKGTNLINLIAIEPDEKIQTVLTVTDEK---KEGFLFMGTKQGIVKKTPLSEFKNLRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L V+ + +I++ T+ G V+F +R GR + GV+ I+L + Sbjct: 634 GLIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSM-GRTASGVKAINLKE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D + M I + + Sbjct: 693 DDIAVCMDIAVDGE---------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE G+GKRT ++++ NR G G+ +S+ + G L +D Sbjct: 707 -------ELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISE--KTGKLAGATICKVDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEA 906 +++L++ G IR+ V +I + SR+ GV + T +DE+VV++ +I +E+E DEA Sbjct: 758 ELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETESGDEA 817 Query: 907 EST 909 ES Sbjct: 818 ESE 820 >gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190] gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902] gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945] gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136] Length = 916 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] Length = 818 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 369/891 (41%), Positives = 553/891 (62%), Gaps = 86/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ +K Y K Sbjct: 7 KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I G+VM +HPHG++AIYDA+ R+AQD++ R LI+G GNFGS+DGDPPAA RYTE R Sbjct: 67 AGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEAR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +L D+ K+TVDF PNYD +EP +L ++ PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 +GEV+DG + +I +P++ D LM++I+GPDFPTGA I+G+ GI+ AY TGRGS+ +R + Sbjct: 187 MGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVKMRAQT 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + R I+V EIPYQVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIEL Sbjct: 247 TIETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ ++ +VILN LY++T +Q F + M+AL +P+ L ++ ++ +++V+ RRT+ Sbjct: 307 KKDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKDVITRRTR 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA RAH++ GL IA+ANLDEV++ IR S N E ARR L+ + Sbjct: 367 YELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDK-------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q AI+E+RL LT L + + E L +I IL+ Sbjct: 413 ------------FNLTEIQAEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++L II+ ELL VK++ RRT I D + ED I EDMVVT+++ GY+KR+ + Sbjct: 461 QKVLNIIRDELLVVKEKFADARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISM 520 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR+Q+RGGKG + + ++EDFV DLFI STH +LFF++ G VY+ KV+ +P S A Sbjct: 521 DTYRSQKRGGKGITAMGTKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTA 580 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN+LS + E +TT++P E E Y+ ATKHG V++ L+++ R G Sbjct: 581 KGTPIINLLSFDSDEYVTTVIPIKEFE---ETAYLFMATKHGIVKKTALTEYNSSRRDGL 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ LD +D++++VE + +I++ T+ G +RF +R GR + GV+GI+L++ D Sbjct: 638 IAINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRPM-GRVTRGVKGITLSQND 696 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ M ++ Sbjct: 697 HVVKMDVIK--------------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +LTV+ G+GKRT ++RI R GKGI +K N GA+ V V++ D++ Sbjct: 706 --EGASLLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRN--GAVTGVLVVSEEDEV 761 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++S +G +IR+ V ++ R T+GV + T +++ +V++ ++ E + Sbjct: 762 MMISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKVITEENEE 812 >gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] Length = 916 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 368/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 880 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 450/873 (51%), Positives = 621/873 (71%), Gaps = 5/873 (0%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y K ARI G+VMGKYHPHG+AAI Sbjct: 1 MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDF Sbjct: 61 YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 RPNYDG+ EPVVL A +P++LVNG G+AVGMATNIP+HNLGE++D C+ +DNP++ L Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 D L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G +HIE DR+ IV+ EIPY Sbjct: 181 DELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI+L+R A A ILNQ+ T L Sbjct: 241 QVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTPL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 +S FSVN + LN +P +L I++AF+ FR+EV++RRT++ L K R++AH+ +GL IA Sbjct: 301 RSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 V ++DEV++IIR + +P A REL+ + W S+ + I + S + DG L+E+Q Sbjct: 361 VLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQ 420 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 +AIL+++L RLTGL +D + EL+S+ IKE + L S +L+ IK L +K+ Sbjct: 421 IKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFA 480 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 PR+T I E D+E ED I +EDMV+TV+ GY+KRV LS YR QRRGGKG+ G +++ Sbjct: 481 VPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKE 540 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+ P ARG+AL+NI L +GE IT I Sbjct: 541 EDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNI 600 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 MP P + N +VF T +GN+RRN L+DF I +GKIA+KLD D+++SV+ C + Sbjct: 601 MPLPSEN--DENQNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEI 658 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + + L+T+ G+ +RF +S +R F RNS GVRGI LAK D VISM I+ + + Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKEL 718 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 Y+K A+R L + I S + + I E +L + E+FILT++E GFGKRTS Sbjct: 719 YLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTS 777 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 +Y++RI+NR G GI + N G +VA FPV D I+L++DKG LIR+ VN+IRIA Sbjct: 778 AYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIA 835 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 R+T+GV +F T E+VVSV +I + + +++ Sbjct: 836 GRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 868 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D V + G R +S R R+ D V + + + + G Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 708 Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 KE ++P+ L + I + + N +++ T Sbjct: 709 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 768 Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++ NR G + +++ Q ++I+L T G+ +R Sbjct: 769 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 828 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ IR AGR++ GV ++V+S+A + D+ D +S+Q Sbjct: 829 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 879 >gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] Length = 916 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 365/915 (39%), Positives = 543/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+Y + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528] gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528] Length = 823 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 374/899 (41%), Positives = 548/899 (60%), Gaps = 86/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I V I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 DEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +IDNPDI + LM I+GPDFPT +I+G +GI++AY TGRG I++R Sbjct: 183 PHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I++TEIPYQVNK+ ++E +A+LV+ K+I I+D+RDESDR G R+V Sbjct: 243 AKAEIEEVK-GRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LNQLY++T +Q F + M++L +P+ L +L ++ F+EE+V R Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA+ RAH+L GL IA+ ++DEV+ +IR S E AR LM Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSE----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 411 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIENEYNELMETIKHLKEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ LL IIK EL+ ++D+ R+T I D+ ED I +++V+T++H GY+KR+ Sbjct: 456 ENKELLLKIIKDELIEIRDKYGDERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRI 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH ++LFF++ G VYK K + +P Sbjct: 516 SADTYSSQRRGGKGIQAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N++ L E+I ++ F E + Y + AT+ G +++ K+S + I ++ Sbjct: 576 TAKGTNLVNLIPLQGDEQIQAVISFKE---VDKDNYFIMATRCGLIKKTKISQYASIRKN 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V T E++IL+ TK G +RF +R GRN+ GVR I+L Sbjct: 633 GLNAINLKDEDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRP-TGRNTTGVRAITLRT 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD ++M IV + Sbjct: 692 GDIAVAMDIVDKSQD--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE GFGKRT ++ I R GKGI V++ + G +V V D D Sbjct: 707 --------VLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTE--KTGLIVGARVVKDED 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++L++ IR+ V+EI + +R T GV + T +++RVV++ +I S+ + S + Sbjct: 757 EMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDTSDNTSND 815 >gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica] Length = 912 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 367/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E + RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 RSW +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + + + + + R Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E +LT + G+GKRT D+ N+ G+G Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882 Query: 889 ERVVSVERIRESEIVDEAESTE 910 E +VS+ER+ E E + TE Sbjct: 883 ETLVSLERVAEEETETDMPETE 904 >gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU] gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|294840722|ref|ZP_06785405.1| DNA gyrase, A subunit [Acinetobacter sp. 6014059] gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056] gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059] gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii ACICU] gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2] gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii TCDC-AB0715] Length = 904 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 380/898 (42%), Positives = 547/898 (60%), Gaps = 45/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + E+ + Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904 >gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter calcoaceticus PHEA-2] Length = 904 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S + LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDESDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 91/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVDLEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDESDDNDDSADSNLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEF 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + E+ + Sbjct: 880 LEGEVDTTETDSEEAVSNNEDASED 904 >gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121] gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121] Length = 893 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 395/907 (43%), Positives = 558/907 (61%), Gaps = 77/907 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Sbjct: 3 ELAKEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G V+GKYHPHG+ A+YDA+ R+AQ +S+R L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH L DL K+TVDF PNYDG+ P V+ R P +LVNG GIAVGMATNI Sbjct: 123 TEIRMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DG +A+IDN I +D LME I GPDFPT A I GR GI +AY TGRG I + Sbjct: 183 PPHNLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFINGRAGIVDAYKTGRGKIYM 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R HIE E IV TEIPYQ+NKA ++EKIAELV++K++ I++LRDESD+ G R Sbjct: 243 RARHHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+RG +ADV++N L+ T LQ +F +NMVAL +PE L +L+ FV R EVV Sbjct: 303 IVIELRRGENADVVVNNLFIQTQLQGVFGINMVALVDGRPELLNLKQVLECFVKHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+R HVL GLA+A+AN++E++ +IR SP A+ +L+ ++W D+ Sbjct: 363 TRRTIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSA 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ + DG+ YLS VQ +AIL+LRL RLTGL + ++NE +L Sbjct: 423 MLERAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALI 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L IL+S +RL+ +I++EL +K + RRT I+ D+ D I MVVT Sbjct: 483 ELIAELLHILASPARLMEVIREELEEIKAQFGDVRRTEILTSRQDLTVADLIDEAPMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ GY K PL Y+AQRRGG+G+S M+DED ++ L + S+H +++ FS+ G VY Sbjct: 543 ISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF-----------PEDESSWNNLYVVF 650 +V+ +P+ S A+G+ ++N+L L++GE I+ ++P + S ++ Sbjct: 603 RVFEIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKSDAEDAETEVSEDAESFIFM 662 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT +G V++ + F + +G IA+ LD DE++ V +DI+L + G+ +RF Sbjct: 663 ATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSSTGKTIRFKE 722 Query: 711 SAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S +R GR + GVRGI L A+G +V+S+ + + Sbjct: 723 SDVRAM-GRTAAGVRGIKLAAEGAKVVSLIVPEEGMS----------------------- 758 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +LT E G+GKRT+ DF + R G+G+ Sbjct: 759 ------------------------------VLTACEHGYGKRTAIDDFPVYGRGGQGVIG 788 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 VS N G +V V D+D+IIL++D+GTL+R V+E+ R T+GV + +E Sbjct: 789 IQVSDRN--GPVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVTLIRLTNEE 846 Query: 890 RVVSVER 896 ++V V R Sbjct: 847 QLVGVVR 853 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 89/259 (34%), Gaps = 14/259 (5%) Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 D E E E + + G VK+ + + R G + DE + + Sbjct: 646 EDAETEVSEDAESFIFMATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSI--TN 703 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 + ++ SS G + K + A A + + L + PE Sbjct: 704 GNDDIMLVSSTGKTIRFKESDVRAMGRTA---AGVRGIKLAAEGAKVVSLIVPE-----E 755 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701 + V+ A +HG +R + DF R G+ + + D + +++I+L T Sbjct: 756 GMSVLTACEHGYGKRTAIDDFPVYGRGGQGVIGIQVSDRNGPVVGAVQVADDDEIILITD 815 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G VR +S + GRN+ GV I L +Q++ + V+ D D ++ + Sbjct: 816 QGTLVRTRVSEV-SCQGRNTQGVTLIRLTNEEQLVGVVRVVEDDEDIEDVEGEAVEEGVE 874 Query: 762 RRLISGDTEEITSLKNDSS 780 + Sbjct: 875 ANAETAPETAEPDAGESEQ 893 >gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107] Length = 916 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 365/915 (39%), Positives = 544/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 >gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] Length = 909 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 381/911 (41%), Positives = 542/911 (59%), Gaps = 46/911 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 +L EV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 HLNEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+VI+N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+D+++ I+ S NP AR L W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S + LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL + + RRT+IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E IT I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFL---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V + I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ V A V D + D + +S Sbjct: 720 TAKGVRGMR------VTLAAAVDSEDTELDH--------------------DELDDSEES 753 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 754 TDSSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV ++ +++L+SD GTL+R E+ + R +GV + + E +V V I Sbjct: 812 ELVGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEA 871 Query: 900 SEIVDEAESTE 910 E + E E Sbjct: 872 VEDDEFIEVVE 882 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 142/441 (32%), Gaps = 39/441 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + A L + ++Q+ + + + ID Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDF 531 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + L+ QT L+ R ++ + +I + L + S+ + Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + + P+ +R +G + E + + Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENHYVFM 651 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VKRV L + R G + + +ED + + I ++ FS+ G + Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRF 709 Query: 602 KVWRLPIGSPQARGKALINIL------------------SLNQGERITTIMPFPEDESSW 643 + A+G + + + + + Sbjct: 710 AETDVRAMGRTAKGVRGMRVTLAAAVDSEDTELDHDELDDSEESTDSSVVSRIVSLVVVP 769 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700 V+ A+ +G +R ++DF R G IA+K E++ + +++L + Sbjct: 770 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDGTKELMLIS 829 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR + + GRN+ GVR I L+ + ++ + + + D + + Sbjct: 830 DGGTLVRTRAAEV-AMTGRNAQGVRLIRLSDAETLVGVVSIEAVEDDEFIEVVEEIATES 888 Query: 761 QRRLISGDTEEITSLKNDSSV 781 + + + S + ++ Sbjct: 889 EITEVDQPEIDSESSDSAATE 909 >gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] Length = 852 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 381/907 (42%), Positives = 556/907 (61%), Gaps = 92/907 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E G+ ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ERPSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 GYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + LL DL K+TVD+R NYDG +EP+VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ DNP I + LME I GPDFPTG +ILGR+GI+ AY TG+GS++ Sbjct: 183 IPPHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVL 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR V IE +E I+V EIP+QVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 IRSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R ASA V+LN LY+ T++Q+ F +NM+AL +P+ +L IL ++ ++ V+ Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++D ++ +IR S E AR LM Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMT---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q++AIL++RL RLTGL RD I E +L I+E Sbjct: 413 ----------------DFNLTERQSQAILDMRLQRLTGLERDKIEEEYQALVKLIEELRY 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+L IIK+E+L +KD RRT I G EDED I E V+T++H GY+ Sbjct: 457 ILANEYRILEIIKEEMLEIKDRFSDKRRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G VY++K +++P Sbjct: 517 KRLPANTYRSQKRGGRGVQGMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G L+N+L +++ E++T ++ E + + + F T+ G +R ++++ I Sbjct: 577 YGRTAKGLPLVNLLEISKEEKVTAVIRVKEFK---EDSFFFFTTREGLSKRTPVTNYANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G IA+ L DE++SV+ ++++ TK G +RFP + IR GR + GVRGI Sbjct: 634 RQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSM-GRTASGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ M I+ D Sbjct: 693 LREGDAVVGMEILDPNDN------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GK+T ++R+ +R G GI+ ++ N G LVAV VN Sbjct: 711 -----------VLVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKN--GPLVAVRTVN 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER------IRESEI 902 + I+L++ G LIR+ VN+I R+T+GV + DE V +V + + E Sbjct: 758 GTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKKDIDVPEELE 817 Query: 903 VDEAEST 909 D E+T Sbjct: 818 DDNTETT 824 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 16/259 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + G KR P++ Y R+ G + +R+ED + + + ++ Sbjct: 607 FKEDSFFFFTTREGLSKRTPVTNYANIRQNG--LIAISLREEDELISVKLTDGTKEMVIG 664 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + + A G I R+ E N V+ T Sbjct: 665 TKDGALIRFPETDIRSMGRTASGVRGI---------RLREGDAVVGMEILDPNDNVLVIT 715 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 + G ++ K S++ +R G D+ ++V T DI+L T G +R Sbjct: 716 EKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGTEDIMLITVNGILIRMD 775 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ I GR++ GVR I L D+V++ + D D E + + + Sbjct: 776 VNDI-STTGRSTQGVRLIRLG-DDEVVATVAKVKKDIDVPEELEDDNTETTINENAEANE 833 Query: 770 EEITSLKNDSSVEGNISEE 788 + E Sbjct: 834 SVANDQVDSIEETPEEDGE 852 >gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii SDF] gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii] Length = 904 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 379/898 (42%), Positives = 547/898 (60%), Gaps = 45/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPT +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFL---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 60/436 (13%), Positives = 142/436 (32%), Gaps = 40/436 (9%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + A L + +++Q+ +A + + +D Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDF 531 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + L+ QT L+ R ++ + + + L + S+ + Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHA 591 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + + P+ +R +G + E + + Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFLENHYVFM 651 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VKRV L + R G + + +ED + + I + ++ FS+ G + Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709 Query: 602 KVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTIMPFPEDESS 642 + A+G + + + + Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVV 769 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699 V+ A+ +G +R ++DF R G IA+K E++ + + ++LL Sbjct: 770 PETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDETKELLLI 829 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G VR + + GRN+ GVR I L++ + ++ + + + + + + Sbjct: 830 SDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIETVEDEEELLEGEVDTTE 888 Query: 760 AQRRLISGDTEEITSL 775 + E+ + Sbjct: 889 TDSEEAVSNNEDTSEE 904 >gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453] gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453] Length = 832 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 374/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG EPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVR+KRI I DLRDESDR G R Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 362 RRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I NE L +I E + Sbjct: 413 -----------------FGLSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFSDERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P + ++ ++ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNFLFFATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V Sbjct: 692 DDDDEVIGMDVVDR---------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +++++ GT+IR + I R +GV + + +D+ V +V R +S Sbjct: 757 EEDLMIITSSGTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKS 807 >gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21] gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21] Length = 862 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 369/908 (40%), Positives = 554/908 (61%), Gaps = 86/908 (9%) Query: 1 MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M + + D I +SI +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ Sbjct: 1 MADETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM+ +GV K Y K ARI G+V+GKYHPHG++++YD + RMAQ+WSLR L++GQGNFG Sbjct: 61 GMLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD PAA RYTE RL++ A +L D+ KDT+D++ N+D S QEP VL + PN+LVNG Sbjct: 121 SIDGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATN+ HNL EV+DG VA IDN DI + LM+ I+ PDFPTG VI G G++ Sbjct: 181 ASGIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIYGYAGVQ 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +A+ TGRG +V+R + IE + D+E I+VTEIPYQVNKA M+++ A+LV EK+I I+ Sbjct: 241 DAFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISA 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDESDR G R+V ++KR A+A ++LN L++YT+LQ+ FSVN +AL +P L ++ Sbjct: 301 IRDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVHGRPMLLNLKDMI 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FV R EV++RRTK+ L +A RAH+L GL IA+ +LDEV+++IR S PE AR LM Sbjct: 361 HHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 ++ LS++Q RAIL++ L RLTGL RD I+ E Sbjct: 421 EK--------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYA 454 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I+ +L+ + IIK ELL VK++ RR++IV DM ED I E++ Sbjct: 455 ELMKTIEYLKSVLADEGLRMKIIKDELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEI 514 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+T+SH GYVKR PL+ YR Q RGGKG G ++EDF + S H +LFF+ G Sbjct: 515 VITISHEGYVKRTPLTEYRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRC 574 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGN 656 + + + +P G+ +RG+A+ NI+++ + E+I + D+ N +++ TK G Sbjct: 575 FWLRAFEIPEGTRTSRGRAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGT 634 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 +++ L + + +G A+ ++ D++L ++I++ K G+ +RF S +R Sbjct: 635 IKKTSLEAYSRPRANGINAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPM 694 Query: 717 AGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG++LA D+V+ M V DA Sbjct: 695 -GRTATGVRGVTLAGPDDEVVGMISVNTNDAT---------------------------- 725 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 IL VSEKG+GKRT D+R++NR GKG++ +V++ Sbjct: 726 ------------------------ILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTE- 760 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G LVA+ V DND +++++ G +IR+ V+++R+ RAT+GV + + +++++ S+ Sbjct: 761 -KTGLLVAIKDVTDNDDLMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKENDQIASIT 819 Query: 896 RIRESEIV 903 ++ E+ Sbjct: 820 KVDHDEVE 827 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 98/251 (39%), Gaps = 13/251 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G +K+ L Y R G + + + + D + + + + ++ ++ Sbjct: 622 ENNFIIMCTKGGTIKKTSLEAYSRPRANG--INAININEGDQLLEACLTNGNSEIVMALK 679 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + A G + + + + N+ ++ ++ Sbjct: 680 SGRAIRFNESTVRPMGRTATGVRGVTLAGPDDEV-------VGMISVNTNDATILVVSEK 732 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + D+ NR GK L+ ++ ++++ T +D+++ + G +R +S Sbjct: 733 GYGKRTDIDDYRVTNRGGKGVKTLNVTEKTGLLVAIKDVTDNDDLMIINRSGIVIRIAVS 792 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RV GR + GVR I+L + DQ+ S+ V H + + + A Sbjct: 793 QLRVM-GRATQGVRLINLKENDQIASITKVDHDEVEGLDVTETSVGNDASTENEGEVDNS 851 Query: 772 ITSLKNDSSVE 782 + D + E Sbjct: 852 TSDKGQDETNE 862 >gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275] gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149] gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33] Length = 916 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 368/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013] Length = 916 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 369/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] Length = 892 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 394/902 (43%), Positives = 562/902 (62%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E N L I E Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + Y+VFAT+ G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLE--SEDDYLVFATRKGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V E DIL+ T +RF A+R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + Sbjct: 694 TLREGDEVVGLDVAHAN------------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 711 --------SEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I R+ +GV + D+ V +V ++++ + DEAE Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820 Query: 908 ST 909 S Sbjct: 821 SD 822 >gi|169830227|ref|YP_001716209.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C] Length = 812 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 382/887 (43%), Positives = 541/887 (60%), Gaps = 86/887 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I + I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ +K + K Sbjct: 7 KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEV+ K HPHG+AA+YDAL R+AQD++ R L++G GNFGS+DGD AA RYTE R Sbjct: 67 AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +L D+ K+TVDF PNYDG+ +EPVVL +R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DG V + D+PD +L+ LM I GPDFPTG I+GR GI AY TGRGSI +RG + Sbjct: 187 LKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGHA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R +IV+TE+PYQVNKA ++EKIA LVREK+I I+DLRDESDR+G RVVIEL Sbjct: 247 EFERVGS-RTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R + ++ LN LY++T LQ F V ++AL +P+ L IL ++ + EV+ RR + Sbjct: 306 RREVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITRRCR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L++A+ R H++ GL IA+A+LDEV++ IR S + AR LM Sbjct: 366 YELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMA--------------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLT L RD + NE N L I+ +L+ Sbjct: 411 -----------GFGLSEKQAQAILDMRLQRLTALERDKLENEFNDLVAAIERLEALLADE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L ++K+ELL+V+D+ PRRT +V D ED I +ED V+ +++ GY+KR+P S Sbjct: 460 QKILAVVKEELLAVRDKFADPRRTELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 VYR+QRRGG+G +GV + +DFV LF+ TH +LFF+ G VY+ KV+ +P QAR Sbjct: 520 VYRSQRRGGRGIAGVETKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N++ + GER+T ++P E + ++ T+ G V++ L +F R G I Sbjct: 580 GTAVVNLIPVANGERVTAVIPVTEYS---GDAFLFMVTRKGIVKKTVLQEFDSARRDGLI 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE++ V+ ++++LL T+ G +RFP +R GR + GVRGISL +GD Sbjct: 637 ALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPM-GRTAHGVRGISLREGDM 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M IV D Sbjct: 696 VVGMDIVDPDD------------------------------------------------- 706 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L VSEKG+GK T +FR+ +R G G+ A VS N G LV++ V ++I+ Sbjct: 707 ----QLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRN--GPLVSLSLVGRGEEIL 760 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +VS G LIR+ ++EI R +GV + A + VV+V I + Sbjct: 761 IVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWILPED 807 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 90/214 (42%), Gaps = 15/214 (7%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VK+ L + + RR G + + + D + D+ I + VL + G V Sbjct: 611 FMVTRKGIVKKTVLQEFDSARRDG--LIALTLDEGDELVDVKITDGKSEVLLGTRNGMVI 668 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + ++ A + +SL +G+ + + + ++ ++ G + Sbjct: 669 RFPEGQVRPMGRTA---HGVRGISLREGDMVVGMDIVD------PDDQLLVVSEKGYGKV 719 Query: 660 NKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + +F +R G + ++S+ + +IL+ +K G +R I I F Sbjct: 720 TPVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKIDEIPQF 779 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 GR + GVR + LA GD V+++A +L D E Sbjct: 780 -GRQAQGVRLMRLAPGDAVVAVAWILPEDPPQGE 812 >gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121] Length = 892 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 394/902 (43%), Positives = 562/902 (62%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E N L I E Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + Y+VFAT+ G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLE--SEDDYLVFATRKGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V E DIL+ T +RF A+R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + Sbjct: 694 TLREGDEVVGLDVAHAN------------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 711 --------SEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I R+ +GV + D+ V +V ++++ + DEAE Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820 Query: 908 ST 909 S Sbjct: 821 SD 822 >gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1] Length = 862 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 396/877 (45%), Positives = 550/877 (62%), Gaps = 68/877 (7%) Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 +GRA+PD+RDGLKPV RR+LF M +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + Sbjct: 1 VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ K AH LL DL KDTVDF PNY Sbjct: 61 VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 DG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL EV+DGC+A I++ +I ++ LM Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVN 276 E I GPDFPT A+I GR GI+ AY TGRG + IR + +E RE I+V EIPYQVN Sbjct: 181 EYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 240 Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336 KA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+KR A +V+LN LY T LQ Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVT 300 Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396 F +NMVAL+ +P+ L IL AFV R EVV RRT + L KARDRAH+L LAIA+AN Sbjct: 301 FGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 360 Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448 +D ++ +IR + P A+ L+ W ++ +++ D + DG Y Sbjct: 361 IDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGKYY 420 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 L+E Q +AIL+LRL +LTGL + + +E L I E + IL + RL+ +I++EL+++ Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVAI 480 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K++ + RRT I D+ ED I +ED+VVT+SH GYVK PLS Y AQRRGGKG+S Sbjct: 481 KEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSA 540 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 +++EDF+ L + +TH ++L FSS G +Y KV++LP S ARG+ ++N+L L E Sbjct: 541 ARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNE 600 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 RIT I+P E E +V AT G V++ L++F + +G IA+ L+ DE++ V+ Sbjct: 601 RITAILPVREYEEGC---HVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVD 657 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 N+++L + LG+ VRFP +R GR + GVRGI+L D+VIS+ I Sbjct: 658 LTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVRGINLNGDDRVISLII-------- 708 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 + ILTV+E G+ Sbjct: 709 ---------------------------------------------PRGDGEILTVTENGY 723 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT+ ++ +R+ +G+ + VS+ N G +V V DQI++++D GTL+R V+ Sbjct: 724 GKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDAGTLVRTRVS 781 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 E+ + R T+GV + TA+DE VV ++R+ E E D+ Sbjct: 782 EVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 818 >gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus] Length = 894 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 393/902 (43%), Positives = 557/902 (61%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 5 PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R Sbjct: 185 PHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 + IE+ G R++IVVT+IPYQVNKA M+EKIAELVREK+I I DLRDE+ R G RV Sbjct: 245 ARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++++ A+A+VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV Sbjct: 305 VIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVR 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 365 RRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AIL++RL RLTGL RD I NE N L I E +I Sbjct: 415 ----------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y+K Sbjct: 459 LADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+Q RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 519 RLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q++G +IN + L+ E I+T++ E + Y+VFATK+G V+R+ LS+F IN Sbjct: 579 SRQSKGIPVINAIELDNDETISTMIAVRNLE--DEDSYLVFATKNGIVKRSALSNFSHIN 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++GKIA+ DE+++V DIL+ T +RF +++R GR + GVRGISL Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ + + Sbjct: 696 REDDVVVGLDVAHAD--------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + VN Sbjct: 711 ------SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNG 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAES 908 + +++V++ G +IR+ V +I RAT+GV + D+ V +V + I ++E D E+ Sbjct: 763 EEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEA 822 Query: 909 TE 910 + Sbjct: 823 AQ 824 >gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] Length = 830 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 386/893 (43%), Positives = 567/893 (63%), Gaps = 85/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + I ++I EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++GV +K Sbjct: 3 DNKDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R LL++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + ++ D+ K+TVD+RPN+D + +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D V +ID+ + +++ ME I+GPDFPTG +ILG GIK+AY TGRG I + Sbjct: 183 PPHNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ S R+ I+V EIPYQVNKA ++EKIAELVR+K+I I+DLRDESDR+G R+ Sbjct: 243 RAKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LN+LY++T L+ F V M+A+ +P+ L +L ++ +++++V Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIV 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA DRAH+L GL IA+ NLDEV+++IR S N + A+ LM++ Sbjct: 363 RRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEK---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AIL++RL +LTGL + + E L I +I Sbjct: 413 ----------------FSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ LL IIK+ELL ++++ RRT I + D + ED+V+T++H GY+KR Sbjct: 457 LANERLLLDIIKEELLEIREKYADKRRTEIAIDPGSINMIDLVDEEDVVITLTHFGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ YR+Q+RGGKG SGV RDEDFV L I STH+ +LFF++LG VYK V+ +P G Sbjct: 517 LPIDTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGR 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I ++P D N Y+V AT+ G +++ +L F + Sbjct: 577 RQAKGTAIVNLLQLSANEKIAAVIPVDRD---CNEQYLVMATQKGIIKKTELCQFDNTRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G +A+ + DE++SV +E +I + T G +RF +R GR ++GV+GI+LA Sbjct: 634 TGLMAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDM-GRTAMGVKGINLA 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V++M Sbjct: 693 EKDYVVAM---------------------------------------------------- 700 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ + +L VSE G GKRT ++R+ R GKGI+ VSK + G L+ V D+ Sbjct: 701 -EVLEDNKDLLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSK--KTGNLIGAKIVEDH 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D+I+L++++G +IR+ V I RAT+GV + +T ++ +VS+ +I E V Sbjct: 758 DEILLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQIPYHEEV 810 >gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442] gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442] Length = 916 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+D ++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 W +S +++++ + +G YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884 Query: 889 ERVVSVERIRESEIV 903 E +VS+ER+ E E Sbjct: 885 ETLVSLERVAEDESE 899 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633 S+LG + + G+ +A + +S + Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768 Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E+ + L V+ AT +G +R ++D+ + N+ G+ + + Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828 Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++ + ++ + +D++L T G +R + IR GR + GV+ I+L +G+ + Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887 Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761 +S+ V +++ + + Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913 >gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] Length = 908 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 388/913 (42%), Positives = 558/913 (61%), Gaps = 86/913 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A+IDN ++ + ++E I GPDFPT +I GR GI+ AY TGRG I IR Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRAR 245 Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I+ +E I+V E+PYQVNKA ++EK+AELV++KR+ I+ LRDESD+ G R+VI Sbjct: 246 ASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +V+LN LY+ T +Q F +NMVAL +P+ F + +L+AFV R EVV RR Sbjct: 306 EIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GL+IA+AN+D ++ +I+ S N + + +L+ + W ++ +++ Sbjct: 366 TIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLS 425 Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + DG YL+ Q +AI++L+L +L+G+ D I +E +L I Sbjct: 426 EAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL++ +RL+ +I +EL++++DE RRT I D+ ED I ED+VVT+SH Sbjct: 486 AELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FS G +Y KV+ Sbjct: 546 EGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLYWLKVF 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARG+ ++NIL L ERIT I+P + ++ Y+V AT G V++ +L Sbjct: 606 QLPLASRTARGRPIVNILPLESDERITAILPVRDYA---DDKYIVMATASGTVKKTRLDA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------AIRVFA 717 + +G IA+ L D ++ V+ ND++L + G+ VRF I++ Sbjct: 663 YSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKLDP 722 Query: 718 ------------GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 GR GVRGI L +V+S+ I Sbjct: 723 ETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLII------------------------- 757 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + ILT++E GFGKRT ++ +R+ K Sbjct: 758 ----------------------------PKNDGPILTITENGFGKRTDLAEYPAKSRATK 789 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N G +V V D D+I+L++D GTL+R VNE+ + R T+GV + T Sbjct: 790 GVVSIKVSERN--GKVVGAVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLIRT 847 Query: 886 AKDERVVSVERIR 898 A DE VV+++RI Sbjct: 848 ADDEHVVALQRID 860 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 97/271 (35%), Gaps = 17/271 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L Y QR G + +RD+D + + I V+ F Sbjct: 640 YADDKYIVMATASGTVKKTRLDAYSNQRANG--IIALNLRDDDTLIGVDITDGTNDVMLF 697 Query: 593 SSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641 S G V + V G + + +L R T + Sbjct: 698 SDAGKVVRFNEKVRDSETGEIKLDPETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLII 757 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILL 698 N+ ++ T++G +R L+++ +R+ K + + +++ ++I+L Sbjct: 758 PKNDGPILTITENGFGKRTDLAEYPAKSRATKGVVSIKVSERNGKVVGAVQVEDLDEIML 817 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 T G VR ++ + GRN+ GVR I A + V+++ + + + Sbjct: 818 ITDSGTLVRTRVNEV-SVIGRNTQGVRLIRTADDEHVVALQRIDEIEEPAELEEVAEGDE 876 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + + + Sbjct: 877 VIETSVEPSSEDNPEHSAQQDVADTSQDDNQ 907 >gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] Length = 895 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 378/906 (41%), Positives = 549/906 (60%), Gaps = 77/906 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K VS+ +EM+ SYL+Y+++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WNK Sbjct: 2 DSFAKETLPVSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K +H +L DL K+TVDF PNYDGS EP +L + P +L+NG GIAVGMATN Sbjct: 122 YTEIRLEKISHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DGC+ + NPD +D L+E I PDFPTG +I G +G++ Y TGRG ++ Sbjct: 182 IPPHNLSEVIDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIYGYSGVREGYRTGRGRVI 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +HIE + I++ EIPYQVNK + EKIA+LV EKRI I+D+RDESD+ G Sbjct: 242 MRAKTHIEDFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKRG ADV+LN L++ T LQ F +N+VAL +P+ L ++ F+ R EV Sbjct: 302 RLVIELKRGEVADVVLNNLFKLTQLQDTFGMNLVALVNGQPKLLNLKELVVYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR+ H L GLA+A+AN+DE ++II+ S +P+ A LM R W++S +K Sbjct: 362 ITRRTVFELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVK 421 Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 L+ +D+ Y + +DG YLS QTR IL + L RLTGL ++ Sbjct: 422 SLLSRVDEDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530 I + + I + LDILS R+ II +EL+++K+E RR++I ++ E E Sbjct: 482 IISSYEAAMDAITDLLDILSKPERITAIIGEELIAIKNEYTIKDARRSQIEYNAVEFETE 541 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I DMVVT+S+ GY+K PLS Y+AQ RGGKG+ M+D DFV LFI +TH VL Sbjct: 542 DLITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVL 601 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FSSLG +++ KVW +P G ++G+ ++N+ L + E+IT ++P + ++ ++ Sbjct: 602 CFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFS---DDQFIFL 658 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ LS + + IA+ LD D ++ E +DI+L + G+ VRF Sbjct: 659 ATAKGVVKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDE 718 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S++R GR+S GV G+ L +G +IS+ + + Sbjct: 719 SSVRA-TGRSSRGVLGMRLEEGQSIISLIVSKN--------------------------- 750 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + ++LT +E G+GKRT ++ R KG+ A Sbjct: 751 -------------------------ENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAI 785 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V+++D+I+L++ G ++R V IR RAT+GV + D + Sbjct: 786 QTSERN--GKVVAAVLVDESDEIMLITTDGIVVRTKVAPIRELGRATQGVKLIRIDNDTK 843 Query: 891 VVSVER 896 + V+R Sbjct: 844 LKGVQR 849 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 75/447 (16%), Positives = 174/447 (38%), Gaps = 30/447 (6%) Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409 R L L+ +E ++ + ++ D +L A + E + I+ Sbjct: 463 TREILNMNLRRLTGLEQEKIISSYEAAMDAITDLLDILSKPERITAIIGEELIAIKNEYT 522 Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGS--DGTMYLSEVQTRAILELRLARLTG 467 + ARR ++ + + +DLI +D + LSE Q + G Sbjct: 523 IKDARRSQIEYNAVEFETEDLITPMDMVVTLSNEGYIKSQPLSEYQAQN------RGGKG 576 Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 ++++ + I D + S L + + ++ V + IV Sbjct: 577 KKATEMKDNDFVQQLFIANTHDYVLCFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQ 636 Query: 528 EDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579 E+E + + + G VK+ LS Y + R+ V + ++D++ Sbjct: 637 ENEKITVVLPIKQFSDDQFIFLATAKGVVKKTALSQYSSTRK--MAVIAVTLDEDDYLVG 694 Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639 + ++ ++ FS+ G + + +RG + + L +G+ I +++ Sbjct: 695 AELTDGNSDIMLFSNAGKAVRFDESSVRATGRSSRG---VLGMRLEEGQSIISLI----- 746 Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDI 696 S N YV+ AT++G +R + ++ + R G IA++ ++++ + ++I Sbjct: 747 VSKNENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAIQTSERNGKVVAAVLVDESDEI 806 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L T G VR ++ IR GR + GV+ I + ++ + V+ + ++ + + Sbjct: 807 MLITTDGIVVRTKVAPIREL-GRATQGVKLIRIDNDTKLKGVQRVVESVSESEVGLDSDT 865 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEG 783 + + + + ++ L++ S Sbjct: 866 VVENEYSVNQINKDDADYLESTDSSTE 892 >gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] Length = 884 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 396/901 (43%), Positives = 560/901 (62%), Gaps = 84/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D + I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ Sbjct: 2 ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA Sbjct: 62 DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGS Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306 I +R + IE+ G R++IVVTEIPYQVNKA M+EKIAEL REKRI I DLRDE+ R Sbjct: 242 IQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLRT 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVI++++ A+A+VILN LY++T LQ+ F VNM+AL +P+ L L ++ ++ Sbjct: 302 GVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQK 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L +R Sbjct: 362 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQER------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q +AIL++RL RLTGL RD I NE N L I E Sbjct: 416 --------------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAE 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHL 545 +IL++ LL +++ EL +K+ RRT I G LD EDED I E +V+T+SH Sbjct: 456 LEEILANEEVLLQLVRDELTEIKERFGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHN 515 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 Y+KR+P+S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + Sbjct: 516 NYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYE 575 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S Q++G +IN + L E I+T++ + E N ++VFATK G V+R+ LS+F Sbjct: 576 VPELSRQSKGIPVINAIELENDEVISTMIAVRDLE--DENSFLVFATKKGIVKRSALSNF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IN++GKIA+ DE+++V + DILL T +RFP +++R GR + GVR Sbjct: 634 SHINKNGKIAIGFKEDDELIAVRLTDGKQDILLGTAHASLIRFPENSLRPL-GRTASGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GISL + D V+ + + Sbjct: 693 GISLRENDVVVGLDV--------------------------------------------- 707 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E +L V+EKG+GKRT ++R+SNR GKGI+ +++ N G +V + Sbjct: 708 ------AYAESEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNVVCIT 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ + +++V+D G +IR+ V +I RAT+GV + ++ V +V ++ + + Sbjct: 760 TVSGQEDLMIVTDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVIDKTEDEA 819 Query: 906 A 906 A Sbjct: 820 A 820 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 76/516 (14%), Positives = 168/516 (32%), Gaps = 38/516 (7%) Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R LK+ IL L + + K TL K + + Sbjct: 367 RTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLSERQAQAI 426 Query: 369 VVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVR---IIRFSPNPETARRELMQRSWN 423 + R + L L + + L+ + + +++ + T +E Sbjct: 427 LDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKERFGDERR 486 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +D ++D + LS I L ++ R + + E Sbjct: 487 TEIQLGGLDHLEDEDLIPEEQIVITLS--HNNYIKRLPVSTYRSQNRGGRGVQGMNTLEE 544 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI------ 533 + S + + K + R+++ + + +E E+ Sbjct: 545 DFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDEVISTMI 604 Query: 534 -----VREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 E+ + + G VKR LS + + GK + +++D + + + Sbjct: 605 AVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKI--AIGFKEDDELIAVRLTDGKQ 662 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +L ++ + + L A G I++ + + EDE Sbjct: 663 DILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAESEDE------- 715 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLG 703 V+ T+ G +R +S++ +++ G +K E + + T + + D+++ T G Sbjct: 716 VLVVTEKGYGKRTPVSEY-RLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIVTDGG 774 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +R + I GR + GVR + L V ++A V+ D + A + Sbjct: 775 IIIRLQVEDI-SQNGRATQGVRLMKLGDNQAVSTVAKVIDKTEDEAATEAAQQTEHASAQ 833 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 E++ + S+E + ++++ F Sbjct: 834 TTESANEQVIDDTTPGNALHTESDEDDERTEVRQDF 869 >gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] Length = 834 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 389/901 (43%), Positives = 537/901 (59%), Gaps = 87/901 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ V I +E++ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++ ++NK Sbjct: 3 PKDARKEDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YDAL RMAQD+++R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A+ LL D+ KDTVDF NYDGS +EPVVL + P +L+NG GIAVGMATNI Sbjct: 123 TEVRMAKLANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV VA++DNPDI + LM + GPDFPT I G GI+ AY GRGSI I Sbjct: 183 PPHNLGEVARALVALLDNPDIGVRELMRHVPGPDFPTRGFIHGAEGIEQAYRDGRGSIQI 242 Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R ++IE + I+VTE+PYQVNKA +LEK+AELV++K+I I+DLRDESDR G R Sbjct: 243 RAKANIETVARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV +L+R A V+LNQL+++T +Q+ F +NM+A++ +P L +L+ F+ R E+V Sbjct: 303 VVFDLRRDAVPQVVLNQLFKFTQMQTTFGINMLAIDRGRPRLMGLKDVLELFIEHRREIV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRT + L KA RAH+L GL IA+ NLDEV+ +IR + NP A+ LM R Sbjct: 363 LRRTAFDLAKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSR--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AILE+RL RLTGL RD I E + EI Sbjct: 414 -----------------FSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKEIARLRH 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S + II++E L + +E RRT IV + D+E ED I E+MVVT+SH GY+K Sbjct: 457 ILESDEEVRRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVTLSHGGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R P S+YRAQRRGGKG G+ +DEDFV DLF STH+ +L F+ G +Y KV +P Sbjct: 517 RTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +RGKA++N++ + E ++T++ E V+ AT+ G +++ +L F + Sbjct: 577 GRASRGKAIVNLVQMLPDESVSTVLAVREFV---EGRQVIMATQKGVIKKTELMSFSRPR 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G IA+ L D ++S E ++ L T+ GQ +RF S +R GR + GV+GI + Sbjct: 634 AGGIIAINLAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSM-GRAAAGVKGIDV 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQV++M V Sbjct: 693 EHDDQVVAMEAV------------------------------------------------ 704 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +LT++E GFGKRT ++ NR+GKG+ + N G +V+ V D Sbjct: 705 -----AGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRN--GHVVSALVVGD 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +D+++L++D G +IR+ V I + R T+GV + ER+V+V R+ E DE E+ Sbjct: 758 DDEVMLITDVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVARLAEP-GDDEVEAG 816 Query: 910 E 910 E Sbjct: 817 E 817 >gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] Length = 904 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+VI+N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S + LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+ +DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ +IN+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFL---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VDLEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ ++ I+ + DA+ + + + DS Sbjct: 720 TAKGVRGMRVS-----IASNTLSEEDAEIEN--------------------DESDDNEDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 AELSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV ++++ +++L+SD GTL+R E+ + R +GV + +++E +V V I Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871 >gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] Length = 893 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 559/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V +++E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENV 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] Length = 813 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 372/893 (41%), Positives = 531/893 (59%), Gaps = 83/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + I + I EM+ SYLTY+++VI+GRA+PD+RDGLKPV RRIL+ M + G +K Sbjct: 4 DFAQRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKP 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G+V+ KYHPHG+AA+YD + RMAQD+ LR L+EGQGNFGS+DGDPPAA RY Sbjct: 64 FRKSAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + AH +L D+ K+TVDF NYD S +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 124 TEARLSRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG + +ID PDI ++ L II+GPDFPTGA+ILG GI+ AY TG+GSI + Sbjct: 184 PPHNLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSITL 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE R +IVVTE+PY VNKA ++E+IAEL R+++I I DLRDESDR G R+ Sbjct: 244 RARTQIETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+ VILNQL++YT+LQ F + M+AL +P L +L ++ + EV+V Sbjct: 304 AIELRRDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLEVIV 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA DRAH+L GL A+ +DEV+ IR SP + AR LM Sbjct: 364 RRTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMS----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +EVQ + IL+++L RLT L R+ ++ E + L I + Sbjct: 413 ---------------NFGFTEVQAQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S IIKQEL +K + PRRTRI D++ ED I ED+VVT+SH GY+KR Sbjct: 458 LASEKMQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVVVTISHSGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPLS YR QRRGG+G G ++EDF+ +F +TH ++FF+ G VY+ + +P S Sbjct: 518 VPLSTYRQQRRGGRGVQGAGTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEAS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QARG A++N++ L GE++ T++P E Y+ FAT+ G V++ +++F + Sbjct: 578 RQARGTAIVNLIPLLPGEKVNTVIPVKE--GDQEEGYIFFATRSGWVKKTAVTEFQNVRS 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL+ D ++ ++I+L + G +RF +R GR++ GV+GI+L Sbjct: 636 TGIIAIKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRPM-GRDTRGVKGITLG 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + V+ M V+ Sbjct: 695 PDEYVVGMDGVVP----------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSE G GKRT ++ R +G+ + G LV V V + Sbjct: 708 ------GADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLP-ERHGRLVGVKAVTEG 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + ++LVS++G LIR+PV E+R + R T+GV + + ++RV +V ++ + Sbjct: 761 NDLMLVSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQVVTRDEE 813 Score = 96.0 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + A Y + K + G+ ++ + + + + ++L E + Sbjct: 447 LQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVV 506 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S G+ KR +R R G+G++ + + I + F + ++ +D+G Sbjct: 507 VTISHSGYIKRVPLSTYRQQRRGGRGVQGAGTKEEDFIEHI---FTTTTHHDMMFFTDQG 563 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 + R+ +EI ASR +G V + E+V +V ++E + + Sbjct: 564 RVYRIRCHEIPEASRQARGTAIVNLIPLLPGEKVNTVIPVKEGDQEE 610 >gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032] gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus SAFR-032] Length = 839 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 378/894 (42%), Positives = 551/894 (61%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NP++ LM+II GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S+IE+TS +++IV+ EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+ V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ ++ Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I +E L I E Sbjct: 413 ----------------NYSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL +K+ + RRT IV G+ +EDED I E++V+T++H GY+ Sbjct: 457 ILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + N Y+ F T+HG +R LS F I Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---ENSYLFFTTRHGVSKRTTLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V E I++ TK G +RF + +R GR + GV+GI+ Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L++ D V+ M Sbjct: 693 LSEDDIVVGM-------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-- 846 E+ + +L V+EKG+GK T ++R+ +R GKG++ ++ N G LVAV Sbjct: 703 ---EILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNN--GPLVAVKATN 757 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +++++ G +IR+ V++I R T+GV + +E V +V + +S Sbjct: 758 AEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQS 811 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 136/403 (33%), Gaps = 37/403 (9%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A+ ++V+ IIR R +R+ + I+ I+D + + L Sbjct: 454 LKAILADNEKVLEIIREELTEIKERFNDTRRT---EIVTAGIETIEDEDLIPVENIVITL 510 Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509 + I L + R + + I +S + + + Sbjct: 511 T--HNGYIKRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYR 568 Query: 510 DE---LDTPRRT------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + RT E + + + + G KR LS Sbjct: 569 AKGYEIPEFGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLS 628 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R G + +RDED + + + + ++ + G + + + A Sbjct: 629 QFANIRNNG--LIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTA- 685 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SG 672 A + ++L++ + E + V+ T+ G + ++ +R G Sbjct: 686 --AGVKGITLSEDD------IVVGMEILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKG 737 Query: 673 KIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 K+ + L T E D+++ T G +R +S I GR + GVR I L Sbjct: 738 LKTCKITDNNGPLVAVKATNAEAEEDLMIITGSGVIIRMAVSDI-STTGRVTQGVRLIRL 796 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + V ++A+V + D ++ ++++ + S + Sbjct: 797 GDEEHVATVALVEQSPEDDEDNEENVENIENIENIESDQEQSE 839 >gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] Length = 858 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 383/918 (41%), Positives = 558/918 (60%), Gaps = 72/918 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + I V+I DE++ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MSDLTNAPSNQ----ILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+ Sbjct: 57 SELNNDWNKSYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R++K +H +L DL K+TVD+ PNYDG+ Q P V+ + PN+L+NG Sbjct: 117 DGDSAAAMRYTEIRMRKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV C+A+IDNPDI +D L+EII GPDFPT A+I GR GI A Sbjct: 177 GIAVGMATNIPPHNLNEVVTACLALIDNPDITIDELIEIIPGPDFPTAAIINGRAGIVQA 236 Query: 241 YATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TG+G I IR + +E ++ I+++E+PYQVNKA ++EKIAELV+EK+I IA+L Sbjct: 237 YRTGKGRIYIRSRAVVETNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAEL 296 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIE+KRG +V LN LY T L+++F +N+VAL +P L +L+ Sbjct: 297 RDESDKDGLRVVIEMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQPRLLNLKQLLE 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV R EVV RRT YLL +AR+R H+L GLA+A++N+D ++ +I+ S A+ +L Sbjct: 357 YFVRHRREVVTRRTVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSA 416 Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471 + W D+ ++ +S+ DG +LS Q +AIL++RL +LTGL + Sbjct: 417 QGWELGDVSQMLARAGESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHE 476 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 + E EI E L IL +L+ +I++EL ++ +E RR+ I+E D+ ED Sbjct: 477 KLLKEYQEKLEEIAEYLSILGDAVKLMTVIREELDAIVNEYGDERRSEIIESTRDLTAED 536 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED VVT+SH GY K LS Y+AQRRGG G+S ++DEDFV L I STH ++L Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILC 596 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FS++G VY KV+ +P+ S ARG+ ++N+L L + ERIT+I+P E Y+ A Sbjct: 597 FSNVGKVYWLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYT---EGHYIFMA 653 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T +G V++ +L++F + G A++L+ D ++ D++L + G+ VRF + Sbjct: 654 TANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNEN 713 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRGI +A G ++IS+ + Sbjct: 714 DVRAM-GRTAKGVRGIRMADGQKMISLLV------------------------------- 741 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +L+VSE G+GKR+ +F R KG+ Sbjct: 742 ----------------------PKDGGRMLSVSENGYGKRSEFAEFATKGRGNKGMIFMQ 779 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G ++ V D D+++++SD+GT++R +EI + R T+GV + + E V Sbjct: 780 ASERN--GEIIGAVQVFDGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHV 837 Query: 892 VSVERIRESEIVDEAEST 909 V VERI E E + E Sbjct: 838 VGVERIEEPEEIAPFEDA 855 >gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] Length = 819 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 374/892 (41%), Positives = 567/892 (63%), Gaps = 85/892 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I ++I EM+NSY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++G+ +K Sbjct: 3 EKRGNIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R +L++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A ++ D+ KDTVD+RPN+D S +EP VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG V +IDN + ++ LME I+GPDFPT A I+G GIK AY TGRG I + Sbjct: 183 PPHNLGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + R+QI++TEIPYQVNKA ++EKIAELVR+K++ I+DLRDESDR+G R+ Sbjct: 243 RAKASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LN+LY++T L+ F V M+A+ +P+ L +L ++ +++++ Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA +RAH+L GL IA+ NLDEV+++IR S N + A+ LM+ Sbjct: 363 RRTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLME----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE Q +AIL++RL +LTGL + + E L I +I Sbjct: 412 ---------------TFTLSEKQAQAILDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +L IIK EL+ +K++ RRT I + ++ ED I E++V+T++H GY+KR Sbjct: 457 LANERLMLNIIKDELIEIKEKYGDERRTEITRAIGEINIEDMITEEEVVITLTHFGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGGKG + + R+EDFV +L S+H +LFF++ G VYK V+ +P Sbjct: 517 LPADTYKSQKRGGKGIAALTTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEAR 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ L+ E + +P +++ Y+V ATK+G +++ +LS F + Sbjct: 577 RQAKGTAIVNLIPLSPNETVAATIPV---GRQFDSKYLVLATKNGIIKKTQLSQFESTRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ + DE++ V+ ++++I+L T G +RF +R GR+++GV+GI+L+ Sbjct: 634 SGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRDM-GRSAMGVKGINLS 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+SM IV Sbjct: 693 PKDHVVSMEIVEENKD-------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +SEKGFGKRT + ++R+ R GKGI+ +V+ + G LV V D Sbjct: 709 ---------LLVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVT--GKTGPLVGAKIVTDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 D+++L+++ GT+IR+ V+ I R TKGV + +D+ ++++ + +E Sbjct: 758 DEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTEN 809 >gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] Length = 893 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V ++ E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144] Length = 893 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V ++ E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028] Length = 894 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V ++ E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425] gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425] Length = 864 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 373/907 (41%), Positives = 542/907 (59%), Gaps = 54/907 (5%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S E ++ I + + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 4 SQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTP 63 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGS+D DPPAA Sbjct: 64 DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAA 123 Query: 128 ERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTE RL+ LL D+ ++TVDF N+DGS QEP+V+ AR P +L+NG GIAVGM Sbjct: 124 MRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGE+++G +A+I NP+I + LM+ I GPDFPTGA ILG TGI+ AY TGRG Sbjct: 184 ATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRG 243 Query: 247 SIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 SI +RGV+ IE DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDE Sbjct: 244 SITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDE 303 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIELKR A V+LN LY+ T LQ F NM+AL +P+ TL L F+ Sbjct: 304 SDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFL 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FR +V+ RRT+Y KA +R H+L GL IA++NLD V+ +IR + + TA++EL+ Sbjct: 364 KFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELI---- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + LSE Q AIL+++L RLT L + I+ E L Sbjct: 420 ----------------------DSYGLSEPQADAILQMQLRRLTALEAEKIQREHEDLVA 457 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + DIL R+L II+ E+ +K +PRRT I + +++ D I + V+ V Sbjct: 458 QIADFQDILDRPERILSIIQTEVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILV 517 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+KR+P+ + AQ R G+GR G ++++D V F H +LFFS G Y K Sbjct: 518 TEQGYIKRMPVDTFEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLK 577 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +++PIGS ARG ++ +L + + E+IT+++P E + Y+V T G +++ L Sbjct: 578 AYQIPIGSRNARGVPIVQLLPIPREEKITSVVPVDEFR---EDEYLVMLTAGGYIKKTAL 634 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRN 720 S F I +G IA+ L++ D++ V + + I++ ++ G + F +R GR Sbjct: 635 SAFSNIRANGLIAIALETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPL-GRA 693 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVR ++L GD++I M I+ A + ++ EEI ++ Sbjct: 694 TRGVRAMALRAGDELIGMDILPSAIVANLAVATSDAEVESEEGAEEMPLEEIPINADN-- 751 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++L V+ GFGKR FR+ NR+GKGI AT Sbjct: 752 ---------------PGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFKTRQTQDQ 796 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L A+ VN D++++V+++G +IR V I SRA GV + +++ + +V + + Sbjct: 797 LAALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEEDSIAAVTIVPST 856 Query: 901 EIVDEAE 907 E+ D E Sbjct: 857 ELTDSEE 863 >gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 367/897 (40%), Positives = 555/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTADHYLFFATRQGIVKRTNVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR + I R+T GV + ++ ++++ + ++ ++ E Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814 >gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] Length = 893 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 401/894 (44%), Positives = 549/894 (61%), Gaps = 68/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G +WNK Y K Sbjct: 6 QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL+DL KDTVDF PNYD + Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+NP+I +D LME I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAIINGRAGIIQAYRTGRGRIYVRAK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE RE I++TEIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G RVVI Sbjct: 246 ADIEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR +V+LN L+ T LQS+F +N+VAL +P+ L ++ F+ R EVV RR Sbjct: 306 EIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQPKILNLQQLIHHFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+RAH L G AIA+ N+DE++ +I+ SP+ AR L+ R WN + ++D Sbjct: 366 TIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQMLD 425 Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + DG +LS Q + ILELRL RLTG+ D I E EI Sbjct: 426 RAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLEEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E DIL +RL+ +I++EL +V +E RRT I+E L D+ ED I ED VVT+S+ Sbjct: 486 AEYQDILGDLTRLMTVIREELEAVVEEFGDERRTEIIESLHDLTIEDLITEEDRVVTISN 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PLS Y+AQRRGG G+S ++DEDFV L + STH ++L F++LG VY KV+ Sbjct: 546 GGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTNLGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ +RG+ +IN+L L +GERI++I+P E + +V+ AT +G V++ L Sbjct: 606 QIPVAGRNSRGRPVINLLPLGEGERISSILPVEEYS---ADKFVIMATANGTVKKTSLEQ 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + G A+ L D ++ ++D++L + G+ VRF + R GR S GV Sbjct: 663 YSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSM-GRVSKGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L +G +VISM + Sbjct: 722 RGMRLPEGHEVISMVVPEEDG--------------------------------------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 F+LTV E G+GKRT +F R GKG+ A S+ N G LV Sbjct: 743 --------------FLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERN--GPLVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + D+I+L+SD+GT++R +E+ + R T+GV I E +V + RI Sbjct: 787 TQLFAGDEIMLISDQGTMVRTRGDEVSVVGRNTQGVRIIRLKDSENLVRLARIA 840 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 88/268 (32%), Gaps = 15/268 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + V+ + G VK+ L Y R G +V D T + + V+ Sbjct: 638 EEYSADKFVIMATANGTVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIID--DDSDVM 695 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 SS G + ++G + R+ + +++ Sbjct: 696 LLSSEGKAVRFASTDARSMGRVSKGVRGM---------RLPEGHEVISMVVPEEDGFLLT 746 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 ++G +R K+ +F R GK + + + + + ++I+L + G VR Sbjct: 747 VCENGYGKRTKVDEFPTKGRGGKGMIAIQASERNGPLVGATQLFAGDEIMLISDQGTMVR 806 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + GRN+ GVR I L + ++ +A + + + + +A + Sbjct: 807 TRGDEV-SVVGRNTQGVRIIRLKDSENLVRLARIAEPEEEEFVAEDAADNNTALDDNTAE 865 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKL 795 + + + S + Sbjct: 866 GSSDDNTSDGSSEDNTSDGSSEDSSADE 893 >gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA] gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA] Length = 848 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 378/898 (42%), Positives = 555/898 (61%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + S+ I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRILF M ++G+ K Y Sbjct: 4 NEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G++GI+ AY TG+G I++R Sbjct: 184 PHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+V Sbjct: 244 AKAEIEE-ENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A+ +VILN LY++T +Q F V M+AL +P+ L +L ++ F++EVV R Sbjct: 303 IELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AILE+RL RLTGL RD I E L I IL Sbjct: 412 ---------------FQLSEKQAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +LL +IK EL+ +K+ + RRT I + + D++ ED I E++V+T++H GY+KR+ Sbjct: 457 ASEEKLLSVIKDELIEIKNRYNDERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGG+G + +++DFV + +VSTH+ VLFF++ G VYK + + +P Sbjct: 517 SADTYSSQRRGGRGIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN++++ Q E+I T++ +D N ++ TK G V++ LS+F + ++ Sbjct: 577 TAKGTNIINLIAIEQDEKIETVLSVKDDV---NEGFLFMGTKQGLVKKTPLSEFKNLRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L V+ + DI++ T+ G +RF + +R GR + GVR I+L K Sbjct: 634 GLIAINLRDGDELLKVKITRGDADIVIVTQDGNAIRFNETDVRPM-GRTASGVRSINLRK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D + M I + + Sbjct: 693 DDIAVCMDIAVEGED--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE GFGKRT +++ R G G+ +S+ + G ++ +D Sbjct: 708 --------LLVISENGFGKRTPITEYKRQKRGGTGLITYKLSE--KTGKVIGATICKIDD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++L++ G IR+ V++I + SR+T GV + T ++E++ ++ +I S E + T Sbjct: 758 ELMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLT 815 >gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] Length = 833 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 378/903 (41%), Positives = 552/903 (61%), Gaps = 88/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NP++ LM+II GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+TS +++IV+ EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+ V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ ++ Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I +E L I E Sbjct: 413 ----------------NYSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL+ +K+ + RRT IV G+ +EDED I E++V+T++H GY+ Sbjct: 457 ILADNEKVLEIIREELIEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + N Y+ F T+HG +R LS F I Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---ENSYLFFTTRHGVSKRTTLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V E I++ TK G +RF + +R GR + GV+GI+ Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L++ D V+ M Sbjct: 693 LSEDDIVVGM-------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-- 846 E+ + +L V+E+G+GK T ++R+ R GKG++ ++ N G LV V Sbjct: 703 ---EILEPDANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNN--GPLVTVKATN 757 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + +++++ G +IR+ V++I R T+GV + +E V +V + +S+ DE Sbjct: 758 AEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQEDDED 817 Query: 907 EST 909 Sbjct: 818 NEE 820 >gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] Length = 890 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 395/907 (43%), Positives = 564/907 (62%), Gaps = 88/907 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDETISTMIAVKDLE--SEEHYLVFATKRGIVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD V+ + + Sbjct: 694 TLREGDVVVGLDVAH--------------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 709 ------AESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE----IV 903 + +++V++ G +IR+ V +I RA +GV + + + V +V +++E E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADS 820 Query: 904 DEAESTE 910 D+ +++E Sbjct: 821 DDTDASE 827 >gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A] gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A] Length = 861 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 396/895 (44%), Positives = 556/895 (62%), Gaps = 68/895 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + I V++ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G WNKK Sbjct: 3 DFAREIVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K A I G+VMGKYHPHG++AIYD L RMAQ +S+R +L++GQGNFGS+DGD PAA RY Sbjct: 63 YSKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL D+ K+TVDF PNYDGS +EP VL PN+LVNG GIAVGMATNI Sbjct: 123 TESRMAKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H+LGE +D + ++D+P+ + LM + GPDFPTGA+I G GI AY TG+G I I Sbjct: 183 PPHHLGETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGALINGTKGIYEAYETGKGRIYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +HIE ++ IVV E+PYQVNKA +L KIAELV++K+I I LRDESD+ G R Sbjct: 243 RAKTHIETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++RG A+VILNQL++ T LQ+ FSVNMVAL G +P+ L +L F+A R EVV Sbjct: 303 MVIEVRRGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQPKLLGLKSLLNVFIAHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAH+L GLA+A++N+D+++ +I+ + P A+ L+ ++W A + Sbjct: 363 TRRTIYELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAV 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ + G YLS Q +AIL+LRL RLTGL ++ I E S+ Sbjct: 423 MLAHAGAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSII 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I+ L IL RL+ +IK+ELL++K + + R T I++ LD+ ED I ED V+T Sbjct: 483 RDIEGFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVIT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY+K PLS Y AQRRGGKG+S ++D+DFV LFI +TH ++L FS+ G VY Sbjct: 543 LSHEGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP S A+GK ++N+L ER+ I+ E +LY+ FAT++G V++ Sbjct: 603 KVYELPHASRNAKGKPIVNLLPFEADERLNAILTTREYP---EDLYLFFATQNGTVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS++ + +G IA+ L D+++ VE E +I+L + G+ VRF +R GR + Sbjct: 660 LSEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSM-GRAA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L G +VI++ ++ Sbjct: 719 GGVRGMRLEAGQKVIALCVLKDQGD----------------------------------- 743 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ILT++E G+GKRT + D+ R KG+ + S+ N G Sbjct: 744 ------------------ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERN--GNA 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V V +++ I+LV+D GTL+R V EI + R T+GV + TA+ E+V++ + Sbjct: 784 VYAIQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAAK 838 >gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354] Length = 941 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 435/928 (46%), Positives = 613/928 (66%), Gaps = 35/928 (3%) Query: 1 MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ + + + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MSDETDTLTPPSPMGEYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 + G + Y K A+I G+VMG YHPHG++AIYDALARM Q WS+R+ LI+GQGNFGS Sbjct: 61 SQEGGFVAGRPYRKSAKIVGDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +D DPPA+ RYTE RL+K A+ LLDDL KDTVDF NYDGS +EP VL A +PN+LVNG Sbjct: 121 MDPDPPASMRYTEARLEKVANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+DGC+A I NP I + L+E I GPDFPT +ILG++G ++ Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGCLAFIANPAITSEELIEYIPGPDFPTAPLILGQSGARS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSI++R +E DR+ IV+T IPYQV K ++EKIAE ++KRI I+D+ Sbjct: 241 AYLTGRGSIMMRARHEVETGRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDES R+G RVV++LKR AS +V+LNQL+RY+ Q+ F NM+A+ G +PE L I++ Sbjct: 301 RDESSREGVRVVVDLKRDASPEVVLNQLWRYSPAQASFPANMLAIRGGRPEVLALRDIIQ 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF++FRE+V+ RRTK+ LNKARDRAH+L+GL +AV+N+DEVV IIR + NP AR +L++ Sbjct: 361 AFISFREQVITRRTKFELNKARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLR 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + W DI I L++ + GT LSE Q +AIL+LRL RLT LGRD+I +EL Sbjct: 421 KEWPIGDIAQYIALVEAIEPSSDEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELK 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +I+ L IL+ R +L ++++EL +++D+ TPR + I ++DED I +EDM Sbjct: 481 ELATKIEYYLSILADRRKLYQVMREELQAIRDQYATPRMSEIAPAWDGVDDEDLIEQEDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTV+H GY+KR PL +RAQ RGGKGRS + +DED V ++F+ STH VLFF++ G V Sbjct: 541 VVTVTHGGYIKRTPLHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRV 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ KVW+LP GSP +G+ ++N+L L + ER+T ++P P+DE+ W+ L +VFAT+ G VR Sbjct: 601 YRLKVWKLPEGSPTTKGRPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVFATEQGMVR 660 Query: 659 RNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 RN + F +I +GK AM DS D ++ V ++ +I L + G+ +RF + R Sbjct: 661 RNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARET 720 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 R +GVRG+ L +GD+V+S+A++ D + R Y++ + Sbjct: 721 KSRTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLRGAVWK--------------- 765 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKI 835 ++ + + E QE++ E+FILT++ G+GK +S+Y++R R G+GI + S Sbjct: 766 -NNDTDHTLDTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDS 824 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGVVI 882 G +VA FPV Q++LV+D+ LIR+P++ I R + GV + Sbjct: 825 KRNGPVVASFPVRHGMQLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKV 884 Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910 F AK E++V RI E + E E+ E Sbjct: 885 FDVAKGEQIVGAARIDE-DADPENEAEE 911 Score = 42.9 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 47/287 (16%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G V+R + + GK G V D + + +++ + S G + Sbjct: 654 TEQGMVRRNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFA 713 Query: 603 VWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDE--------------- 640 G + K ++SL ++ M E Sbjct: 714 ATDARETKSRTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLRGAVWKNNDTDHTL 773 Query: 641 -------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL------DSRDEILSV 687 N +++ T +G + + ++ I R G+ + +++ Sbjct: 774 DTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPVVAS 833 Query: 688 ETCTQENDILLTTKLGQCVRFPIS------------AIRVFAGRNSVGVRGISLAKGDQV 735 ++L T + +R PI GR S GV+ +AKG+Q+ Sbjct: 834 FPVRHGMQLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQI 893 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 + A + +E + R + + + + Sbjct: 894 VGAARIDEDADPENEAEEAIMDERMAREDQTTSPHTTLDRDDPTPTD 940 >gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909] Length = 893 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 559/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDNVVDLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V +++E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENV 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE] gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] Length = 904 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 381/900 (42%), Positives = 548/900 (60%), Gaps = 48/900 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 TDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVER 896 LV +++ +++L+SD GTL+R E+ + R +GV + +++E VVS+E Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIEA 872 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 60/436 (13%), Positives = 142/436 (32%), Gaps = 40/436 (9%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + A L + +++Q+ +A + + +D Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDF 531 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + L+ QT L+ R ++ + + + L + S+ + Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHA 591 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + + P+ +R +G + E + + Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFM 651 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VKRV L + R G + + +ED + + I + ++ FS+ G + Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709 Query: 602 KVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTIMPFPEDESS 642 + A+G + + + + Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVV 769 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699 V+ A+ +G +R ++DF R G IA+K E++ + + ++LL Sbjct: 770 PETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDETKELLLI 829 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G VR + + GRN+ GVR I L++ + ++ + + + + + + Sbjct: 830 SDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEELLEGEVDTTE 888 Query: 760 AQRRLISGDTEEITSL 775 + E+ + Sbjct: 889 TDSEEAVSNNEDTSEE 904 >gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] Length = 946 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 445/929 (47%), Positives = 611/929 (65%), Gaps = 36/929 (3%) Query: 1 MTEH--IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M + I + + T + I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MADDIDTIDTPVPGGEEHTRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 + G + + K A+I G+VMG YHPHG+AAIYDALARM Q+WSLR+ LI+GQGNFG Sbjct: 61 ASNEGGFVAGRPFRKSAKIVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+D DPPA+ RYTE RL + A+ LLDDL KDTVDF NYDGS +EP VL AR+PN+LVNG Sbjct: 121 SMDPDPPASMRYTEARLARVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+DGC A +DNP I + L EII GPDFPT +ILG+TG + Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLILGKTGAR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSI+ R IE+ GDR+ IV+T IP+QV K+ ++EKIAE ++KRI I+D Sbjct: 241 AAYTTGRGSILQRARHEIEERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDES RQG RVV++LKR ASA+V+LNQ++RYT QS F NM+A++G +PE TL + Sbjct: 301 IRDESSRQGVRVVVDLKRDASAEVVLNQIWRYTPAQSSFPANMLAISGGRPEVLTLREFI 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 +AF+ FREEV+ RRTKY LNKARDRAH+L+GL +AV+NLDEVV +IR +P P AR L+ Sbjct: 361 QAFITFREEVITRRTKYELNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLL 420 Query: 419 QRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + W DI I L++ + GT LSE Q +AIL+LRL RLT LGRD+I +EL Sbjct: 421 AKEWPIGDIAQYIALVEAIEPSDEQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGDEL 480 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 L + I+E L IL+ R +L G+++ EL ++ TPR + I ++DED I RE+ Sbjct: 481 KLLSLSIEEYLSILADRVKLYGVMRGELEEIRAAYATPRVSEIAPAWDGIDDEDLIEREE 540 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVTV+H GY+KR PL +RAQ RGGKGRSG+ +DED V +LF+ STH VLFF++ G Sbjct: 541 MVVTVTHGGYIKRTPLDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGR 600 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ KVW+LP G PQ +G+ ++N+L L ER+T ++ PEDE+ W L +VFAT+ G V Sbjct: 601 VYRMKVWKLPEGGPQTKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMV 660 Query: 658 RRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 RRN + F + +GK AM DS D ++ VE T++ +I L + G+ +RF + R Sbjct: 661 RRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARE 720 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R +GVRG+ L +G +V+SMA++ + D + R Y++ + Sbjct: 721 TKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWK-------------- 766 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--S 833 ++ + + E+ +E+ E+FILT++ +G+GK +S+Y++R R G G+ S Sbjct: 767 --NNENDYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSS 824 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGV 880 + G +VA FPV Q++LV+D+ LIR+P+N I+ R + GV Sbjct: 825 NPDRNGTVVASFPVKHGSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGV 884 Query: 881 VIFSTAKDERVVSVERIRESEIVDEAEST 909 IF+ AK E++V I E+E + Sbjct: 885 RIFNVAKGEQIVGAALIDETEEPENQAEE 913 Score = 45.2 bits (105), Expect = 0.059, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 48/290 (16%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G V+R + + GK G V D + + +++ + S G + Sbjct: 655 TEQGMVRRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFS 714 Query: 603 VWRLPI----------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------ 646 G G+ ++++ L+ GER T + + W N Sbjct: 715 ATDARETKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWKNNENDYTL 774 Query: 647 -------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-------LS 686 +++ T G + + ++ I R G + ++ Sbjct: 775 DAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVA 834 Query: 687 VETCTQENDILLTTKLGQCVRFPIS------------AIRVFAGRNSVGVRGISLAKGDQ 734 + ++L T + +R PI+ +GR S GVR ++AKG+Q Sbjct: 835 SFPVKHGSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQ 894 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++ A++ + ++ ++ A R ++ T+ + + + Sbjct: 895 IVGAALIDETEEPENQAEELVQDEIAARGGLNKTEPYTTAHSDKNIEDEP 944 >gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87] gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87] Length = 891 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 395/907 (43%), Positives = 564/907 (62%), Gaps = 88/907 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 4 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 64 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 244 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 304 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 363 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 364 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 415 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 416 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 457 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 458 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 518 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E Y+VFATK G V+R+ LS+F + Sbjct: 578 ELSRQSKGIPVVNAIELENDETISTMIAVKDLE--SEEHYLVFATKRGIVKRSALSNFSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI Sbjct: 636 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD V+ + + Sbjct: 695 TLREGDVVVGLDVAH--------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 ------AESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE----IV 903 + +++V++ G +IR+ V +I RA +GV + + + V +V +++E E Sbjct: 762 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADA 821 Query: 904 DEAESTE 910 D+ +++E Sbjct: 822 DDTDASE 828 >gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435] gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus haemolyticus JCSC1435] Length = 899 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 393/902 (43%), Positives = 556/902 (61%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 5 PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG+ +IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R Sbjct: 185 PHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 + IE+ G R++IVVT+IPYQVNKA M+EKIAELVREK+I I DLRDE+ R G RV Sbjct: 245 ARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++++ A+A+VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV Sbjct: 305 VIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVR 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 365 RRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AIL++RL RLTGL RD I NE N L I E +I Sbjct: 415 ----------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y+K Sbjct: 459 LADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+Q RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 519 RLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q++G +IN + L+ E I+T++ E + Y+VFATK+G V+R+ LS+F IN Sbjct: 579 SRQSKGIPVINAIELDNDETISTMIAVRNLE--DEDSYLVFATKNGIVKRSALSNFSHIN 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++GKIA+ DE+++V DIL+ T +RF +++R GR + GVRGISL Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ + + Sbjct: 696 REDDVVVGLDVAH----------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + VN Sbjct: 709 ----ADSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNG 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAES 908 + +++V++ G +IR+ V +I RAT+GV + D+ V +V + I ++E D E+ Sbjct: 763 EEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEA 822 Query: 909 TE 910 + Sbjct: 823 AQ 824 >gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] gi|294837788|ref|ZP_06782471.1| DNA gyrase, A subunit [Acinetobacter sp. 6013113] gi|294858569|ref|ZP_06796338.1| DNA gyrase, A subunit [Acinetobacter sp. 6013150] gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058] gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] Length = 904 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 381/900 (42%), Positives = 548/900 (60%), Gaps = 48/900 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A ++ D D + + +DS Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 755 TDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVER 896 LV +++ +++L+SD GTL+R E+ + R +GV + +++E VVS+E Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIEA 872 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLV 760 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + E+ + Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904 >gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 366/897 (40%), Positives = 555/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI + +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTADHYLFFATRQGIVKRTNVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR + I R+T GV + ++ ++++ + ++ ++ E Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814 >gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 817 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 391/870 (44%), Positives = 554/870 (63%), Gaps = 68/870 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I A Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 V+D DQI++++D GTL+R V+EI + R Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGR 817 Score = 98.3 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 13/236 (5%) Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 F R+ A D E + +QEN ++ + G P++ R Sbjct: 510 RDQFGDERRTEITANSADINIE----DLISQENVVVTLSHQGYVKYQPLTDYEA-QRRGG 564 Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778 G + + D + + + D Y + G Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP 624 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 I+ + + + G K+T+ +F + GI A ++ N+ Sbjct: 625 LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNL---NDG 679 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L+ V + +D+++L S G ++R + +R R GV A D++VVS+ Sbjct: 680 DELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 735 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 12/262 (4%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+ L+D+ R GK A ++ D I + + IL + G+ Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 + + A R + G V + L +++ + I+ + + + + Sbjct: 600 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVK 656 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 + + S + + E +L ++ S G R R R Sbjct: 657 KTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGR 716 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 + G+R ++ +V++ I+ V+ G R +E SRAT+GV+ Sbjct: 717 TATGVRGIKLA---GDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVIS 773 Query: 883 FSTAK-DERVVSVERIRESEIV 903 + + VV ++ + + + Sbjct: 774 IKVTERNGSVVGAVQVDDCDQI 795 Score = 79.1 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A+ + + R + + + + N ++ ++L +E + Sbjct: 481 LLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVV 540 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S +G+ K D+ R GKG A + + + I L N +D I+ S +G Sbjct: 541 VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 597 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 L + V ++ ASR +G V + +ER+ ++ +RE E Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 642 >gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE] gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE] Length = 812 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 384/894 (42%), Positives = 554/894 (61%), Gaps = 87/894 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+GM ++G ++K Y Sbjct: 4 QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMGKYHPHG+ AIYD + RM QD+SLR LI+GQGNFGSVDGD AA RYTE Sbjct: 64 KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +LDDL K+TV+F PN+D S +EP VL A+ PN+L+NG GIAVGMATNIP Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV+DG VA+I++P I+ L+++I GPDFPTGA I GR GIK+AY TGRGSI IR Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I + G R I+VTEIPY VNKA ++E IA+LVR+K++ I+DLRDESDR G R+VI Sbjct: 244 KAEITE-EGGRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+GA+A+V+LNQLYR+T +++ F VN +AL +P +L L+ ++ R+EVV RR Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +++ L KA+ R H+L GL +A+ N+D+ V I+R S + + A+ M + Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSK------------ 410 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q++AIL++RL LTGL R I +E L I ++L+ Sbjct: 411 --------------YGLSEEQSKAILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLA 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L IIK ELL ++ + RRT I E ++ DED I E++VVT+S+ GY+KR P Sbjct: 457 SPQMVLDIIKNELLELRAKYGDGRRTIIKESDGEIVDEDLIPVENVVVTISNTGYIKRQP 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + YR QRRGG G G+ ++EDFV D+F STH +LFF++ G VY KV+ +P S Q Sbjct: 517 VDTYRTQRRGGMGIMGMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQ 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RGKA++N+L+L E + ++P E + Y++ T+ G +++ LS F I R+G Sbjct: 577 SRGKAIVNLLTLMPNESVNAMIPIKEFD---EKHYLIMCTREGTIKKTALSSFQNIRRTG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD DE++SV+ ++L+ T+ G+ RF S +R GR + GV GI L + Sbjct: 634 IIAIGLDEGDELISVKLTNGGQEVLIATRNGKANRFSESEVRPM-GRQAGGVIGIRLTEK 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI M +V + + Sbjct: 693 DKVIGMEVVSESAS---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ILTV E GFGKRT+ ++ +R G+G+ + N G +VA+ V D+DQ Sbjct: 707 -------ILTVCENGFGKRTAISEYTPHHRGGQGMINIKTTLRN--GGVVAIASVTDDDQ 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDE 905 +++V+ G ++R+ V +I SR T+GV I + +++ VV V ++ + +E Sbjct: 758 LLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSEKKEEE 811 >gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045] Length = 893 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 395/902 (43%), Positives = 557/902 (61%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RF S +R GR + GV+GI Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL +GD V+ + + Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V++I RA +GV + + V +V ++ E + +E Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820 Query: 908 ST 909 Sbjct: 821 DE 822 >gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489] gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489] Length = 851 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 382/902 (42%), Positives = 556/902 (61%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N + Sbjct: 3 EGEKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D S +EP VL AR PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA IDN DI++D L+ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ RE IVVTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR G R+V Sbjct: 243 AKATFEEVQ-GRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN L++YT+LQ+ FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGRPQLLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA DRAH+L GL IA N+DEV+ IIR S N + AR L++R Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I + DIL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R + IIK ELL VK++ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ANEERRMQIIKDELLEVKEKYGDERRSEINFAGGDLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + I L K G+ +RF S R GRN+ GVRGI+L Sbjct: 636 LNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V + D D Sbjct: 695 ADDNDEVVGMVSVHNFDDD----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+RI+NR GKG++ V+ ++ G LVA+ V Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVT--DKTGGLVAIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ + E + E Sbjct: 761 DSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDEEG 820 Query: 909 TE 910 E Sbjct: 821 LE 822 >gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] Length = 910 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 374/899 (41%), Positives = 540/899 (60%), Gaps = 46/899 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S D LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDGRRTEIVESGVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+ +G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLCFTDVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ +IN+L L+ E +T I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L+ F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ + +A + + + +DS Sbjct: 720 TAKGVRGMR--------------------------VTLAAAVDSEDADLDNDDSDDNDDS 753 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 S +S + + +L S G+GKRT DF R GKG+ A S+ N G Sbjct: 754 SDSNVLSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV +++ +++L+SD GTL+R E+ + R +GV + + E +V V I Sbjct: 812 ELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSID 870 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 97/270 (35%), Gaps = 24/270 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L+ + R G + + +ED + + I + ++ F Sbjct: 643 FPENHYVFMATASGTVKRVELAQFSNIRANG--LRAIELNEEDTLIGVAITDGNQQIMLF 700 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN------------------ILSLNQGERITTIM 634 S+ G + + A+G + + + Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLS 760 Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCT 691 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 761 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 820 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 + +++L + G VR + + GRN+ GVR I L+ + ++ + + + + ++ Sbjct: 821 ETKELMLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSDAETLVGVVSIDAVEVEDEDE 879 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 + ++ + + E K+D+ Sbjct: 880 LELIEGVENPEAQTATSEEVAVEPKDDTPE 909 >gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius] Length = 882 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 387/902 (42%), Positives = 561/902 (62%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G RE+IVVTEIP+QVNKA M+EKIA+LVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G+ +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ ++DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V + IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + + D Sbjct: 694 RLRDGDEVIGLDVADDDNKDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ +++V+++G +IR+ V+ I + R +GV + ++ V +V ++++ E++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESD 820 Query: 908 ST 909 Sbjct: 821 ED 822 Score = 75.6 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 13/267 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ED +V V+ G +KR LS + R GK + RD+D + + + +L Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGDKHIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + K + S A G I R + + N ++ Sbjct: 665 IGTAQASLIRFKETDVRAMSRIAAGVKGI-------RLRDGDEVIGLDVADDDNKDEILV 717 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + D+ G KL ++ + T + D+++ T G +R Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S I GR + GVR I L V ++A V D + + + Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESDEDTGVSEVSDVADDAT 836 Query: 768 DTEEITSLKNDSSVEGNISEERCQELK 794 + + D+ E E + Sbjct: 837 EVVVDDATPGDTIHTEAPEPEASPERE 863 >gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] Length = 923 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 371/906 (40%), Positives = 549/906 (60%), Gaps = 28/906 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D+P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI ELVREK + I+D Sbjct: 241 YKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I D + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSV 894 E +VS+ Sbjct: 885 ETLVSL 890 >gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10] gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10] Length = 835 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 377/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++++ +T ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 DQDQSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +A+ NP+I ++ LME I GPDFPTGA I+G +GI+ AY TG+GSI+ Sbjct: 183 IPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGSIM 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE +G I+V E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 IRSNARIEDHNGKPW-IIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +A+V+LN LY+ T+LQ+ F +N +AL +P+ L L ++ + V+ Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S + AR LM++ Sbjct: 362 RRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I NE N L I E Sbjct: 413 -----------------FDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++ELL ++D RRT I G MEDED I R+++V+TVSH GY+K Sbjct: 456 ILADDEKVLEIIREELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+Q+RGG+G G+ DEDFV LF+ ++H +LFF++ G VY+ K + +P Sbjct: 516 RIPVSTYRSQKRGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQ 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G +IN+L + + E I+T++P E + N ++F TK+G +R +L F I Sbjct: 576 KRTSKGIPIINLLQIEKDEYISTVIPISEFD---ANHSLIFMTKYGVSKRTELDAFKNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G A+KL DE+ V ++++ TK G +RF + +R+ GR + GV+G+ L Sbjct: 633 KGGLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLM-GRTATGVKGLRL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M I+ Sbjct: 692 QSEDEVVGMDIIEPDSD------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 IL V+E GFGKRT ++R +R GKGI+ +++ N G LV++ V Sbjct: 709 ----------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKN--GQLVSLKVVGS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ V++I SR T+GV + +E V +V R+ Sbjct: 757 DHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARV 804 >gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2] Length = 827 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 374/905 (41%), Positives = 554/905 (61%), Gaps = 90/905 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + + + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ Sbjct: 2 DENTIFDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 TNIP HNL EV++ + +IDN + ++ L+EII+GPDFPTGA ILGR+GI AY Sbjct: 182 TNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V+ IE + +++I+VTE+PY VNKA ++EKIA LVREK++ I +LRDE Sbjct: 242 TGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+ IEL+R A+A+VILNQLY++T LQ F V M+AL +P+ L +L ++ Sbjct: 302 SDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +++VV RRT+Y LNKA +RAH+L GL IA N+DEV++IIR + N + A+ ELM+R Sbjct: 362 THQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELMER-- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LS+ Q +AI+++RL L GL R + E L Sbjct: 420 ------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELME 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E IL+ +LLG+IK E+ ++D+ RRT+I + D+ ED I RE+ V+T+ Sbjct: 456 RIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITM 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LGY+KR+ + +++Q RGGKG G+ DED++ +LF+ +TH ++FF++ G VY+ K Sbjct: 516 TKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P ARG A++N+L L GE+IT ++P + E Y++ ATK+G V+++ + Sbjct: 576 AYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYE---EGKYLLMATKYGVVKKSSI 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++ I ++G A+ L D+++ V+ + D+ L TK GQC+RF S +R GR S+ Sbjct: 633 MEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSM 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI+L D+VI M + +A Sbjct: 692 GVRGINLTGDDEVIGMQLDSQGEA------------------------------------ 715 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +L VS G GKRT + +F +R GKGI+ +++ + G +V Sbjct: 716 -----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVV 756 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V VND+++I++++ +G +IR V+ I I R T GV + + ++ V S+ ++RE ++ Sbjct: 757 GVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKL 816 Query: 903 VDEAE 907 DE E Sbjct: 817 EDEME 821 >gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] Length = 911 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 370/921 (40%), Positives = 557/921 (60%), Gaps = 35/921 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ I D++ K +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSSEI---DQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +S+R +L++GQGNFGSV Sbjct: 58 HELKNNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSV 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ +DTV+F NYDGS +EP+VL R+P +LVNG Sbjct: 118 DGDAAAAMRYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSE 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNL + + GC+ ++ P+ D++ L++II+ PDFPTGA I G TGI+ Sbjct: 178 GIAVGMATSIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIYGLTGIRAG 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG +VIR +HIE + E I+V EIPYQVNK+ ++EKI EL+REK + IA+LR Sbjct: 238 YQTGRGRVVIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+VIELKR +A+VILNQLY+ T LQ FS+NMVAL +P L IL Sbjct: 298 DESDKDGTRIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQPRLLNLKQILSE 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R EVV RRT Y L KAR H+ G A+A++N+DE++ +I+ S + ++AR L+ R Sbjct: 358 FLRHRREVVTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSR 417 Query: 421 SWNASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 +W + + ++++ D +LS+ Q RAIL + L LTGL + Sbjct: 418 AWQSDLVSEMLNRSDLDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQ 477 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMED 529 D+I E L I + LDIL+ R+ II EL++++ + RR+ I D+ D Sbjct: 478 DEIIKEYKELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIAD 537 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I +MVVT++H GY+K P S Y+AQ+RGG+G+ +DEDF+ LF+ +TH + Sbjct: 538 EDLIPPREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYL 597 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + F++LG + KV+RLP G Q+RG+ + N++ L + E+++ I+P + + YV Sbjct: 598 MCFTNLGRCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFP---EDEYVF 654 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 FAT G V++ +LS F ++ G A+ L D ++ V + +DI+L + LG+ +RF Sbjct: 655 FATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 714 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 F S + + +S ++ +D + + + + + Sbjct: 715 E-----FYNPTS------NDDDESEDVSGSLNDDSDDENSDEFNLLTNKGIRPSGRGSGG 763 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 L + + + E +L+ +LT ++ G+GKRT ++ + G+GI A Sbjct: 764 LRGMRLPENGRIVSLLVAELGSDLQ-----VLTATQNGYGKRTPIENYSRKGKGGQGIIA 818 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 D + N G LV V+ +D ++L++ G LIR V ++R RA +GV + + + Sbjct: 819 IDTGERN--GELVGAALVSPSDDLMLITSGGVLIRTKVEQVRETGRAAQGVRLINLDEGT 876 Query: 890 RVVSVERIRESEIVDEAESTE 910 +VS+ER+ E +EAE E Sbjct: 877 TLVSIERVAEENSDEEAELVE 897 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 60/466 (12%), Positives = 157/466 (33%), Gaps = 71/466 (15%) Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + R D+ ++ +A + +++ I+ A+ Sbjct: 450 QSDGYWLSDEQARAILRMSLRNLTGLDQDEIIKEYKELMAIIVDLLDIL--------AKP 501 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 E +++ + + D+ I + G +++ E+ + G Sbjct: 502 ERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIADEDLIPPREMVVTLTHGGYIKTRPT 561 Query: 476 ELNSLGIE--IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-------------- 519 + + + R Sbjct: 562 SDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGRCHWIKVYRLPEGGRQS 621 Query: 520 ----IVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 I + E+E ++ V + LG VK+V LS ++ KG Sbjct: 622 RGRPINNVIQLEENEKVSAILPVRDFPEDEYVFFATALGVVKKVQLSAFK--NVSVKGIK 679 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627 + ++D D + + S + ++ FS+LG + + P + + + L+ + Sbjct: 680 AIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRFNEFYNPTSNDDDESEDVSGSLNDDSD 739 Query: 628 ERITTIMPFPEDESSW-----------------------------NNLYVVFATKHGNVR 658 + + ++ ++L V+ AT++G + Sbjct: 740 DENSDEFNLLTNKGIRPSGRGSGGLRGMRLPENGRIVSLLVAELGSDLQVLTATQNGYGK 799 Query: 659 RNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R + ++ + + G+ + +D+ + E++ + +D++L T G +R + +R Sbjct: 800 RTPIENYSRKGKGGQGIIAIDTGERNGELVGAALVSPSDDLMLITSGGVLIRTKVEQVRE 859 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GR + GVR I+L +G ++S+ V ++D + + + +++ Sbjct: 860 -TGRAAQGVRLINLDEGTTLVSIERVAEENSDEEAELVELMDNTSE 904 >gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] Length = 923 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 370/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I D + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSV 894 E +VS+ Sbjct: 885 ETLVSL 890 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 103/277 (37%), Gaps = 42/277 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623 S+LG + + S + N L Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768 Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L +I +++ F + ++L V+ AT +G +R ++D+ + N+ G+ + Sbjct: 769 GLRGMRLPAYGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827 Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 +++ + ++ ++ +D++L T G +R + IR GR + GVR I+L +G+ Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 ++S+ V D + E Sbjct: 887 LVSLERVAEEAEDEAALESDAAENQVVEAEDTPSQES 923 >gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99] Length = 878 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G+ +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVCLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + + D Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++++ EA+ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 908 S 908 Sbjct: 821 E 821 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ED +V V+ G +KR LS + R GK + RD+D + + + +L Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVCLTDGEKHIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + K + S A A + + L G+ + + +D ++ Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + D+ G KL ++ + T + D+++ T G +R Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S I GR + GVR I L + V ++A V D + ++ + Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836 Query: 768 DTEEITSLKNDSSVEGNISEER 789 D + + E +S ER Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858 >gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 892 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 392/902 (43%), Positives = 564/902 (62%), Gaps = 85/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV++G +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVV+EIP+QVNKA M+EKIAEL REK++ I DLRDE+ R G Sbjct: 243 MRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA DRAH+L GL IA+ ++DE++ IR S + A L Sbjct: 363 VRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERL----------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 G LSE Q +AIL++RL RLTGL RD I +E N L I+E Sbjct: 412 ---------------QGRFKLSERQAQAILDMRLRRLTGLERDKIESEYNELIAYIEELR 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL V++ RR+ I GL +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEVRERFGDERRSEIQLGGLDQIEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ + +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G +IN + L E I+T++ + E + Y+VFATK+G V+R+ LS+F Sbjct: 577 ELSRQSKGIPVINAIELENDESISTMIAVNDLE--KEDAYLVFATKNGIVKRSSLSNFSH 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V D+LL T +RF S +R GR + GV+GI Sbjct: 635 INRNGKIAINFRDEDELVAVRLTDGTKDVLLGTSHASLIRFKESKLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+++ +A+ Sbjct: 694 TLREGDELVGLAVATED------------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++RISNR GKGI+ +++ N G +V + V Sbjct: 711 --------SEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKN--GDIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++V+++G +IR+ V++I RA +GV + +++ V +V +++E ++ DE E Sbjct: 761 TGEEDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQE-DLEDELE 819 Query: 908 ST 909 T Sbjct: 820 GT 821 >gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74] gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74] Length = 838 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 371/910 (40%), Positives = 546/910 (60%), Gaps = 90/910 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + D E I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM Sbjct: 1 MADET--PDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +NK + K ARI GEV+GKYHPHG++++YD + RMAQDWSLR L++GQGNFGS+ Sbjct: 59 AELGVNYNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSI 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL++ A LL D+ K+TVDF+ N+D S QEP V+ A+ PN+L+NG Sbjct: 119 DGDSPAAMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HNL EVVDG +A ++N +I ++ LM+ ++ PDFPTGA I G G+K+A Sbjct: 179 GIAVGMATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIYGMEGVKSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG +V+R + IE+ + QI+VT++PY VNKA MLEK AEL+ +K+I I R Sbjct: 239 FKTGRGRVVMRAHATIEENR-GKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV +L++ A +V+LN LY++T+LQS FS+N VAL +P L ++K Sbjct: 298 DESDRDGLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGRPMMLNLKDMMKY 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V R EV+ RRT+Y L +A RAH+L GL IA+ N+D V+ +IR S +PE AR LM+R Sbjct: 358 YVEHRFEVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q +AILE+RL RLTGL RD ++ E + L Sbjct: 418 --------------------------FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDEL 451 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539 EI + +IL+S R +IK+EL ++ RRT I G ++ D I EDMV Sbjct: 452 MTEIADLKEILASEERKRQVIKEELTDIRARYGDERRTEINPLGDGNISDLSLIADEDMV 511 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T+SH GY+KR P + YR+Q RGG G ++EDF LF + H ++L F+ G +Y Sbjct: 512 ITISHEGYIKRTPTTEYRSQGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMY 571 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657 V+ LP GS ++G+ L N +++ +++ ++ + +E NN Y+V T+ G + Sbjct: 572 WLPVYELPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTI 631 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L + + ++G IA+ +D D++L V +NDI++ + G+ VRF S +R Sbjct: 632 KKTMLEAYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPM- 690 Query: 718 GRNSVGVRGISLAKG---DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRGISL + D VI M + DA Sbjct: 691 GRTAAGVRGISLDEEDPTDHVIGMVCISSQDAQ--------------------------- 723 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 +L VS+ G+GKR+ +RI+NR KG+ +++ Sbjct: 724 -------------------------LLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITE 758 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++G LVAV V DND +++++ G IR PV+ I + R T+GV + + + + SV Sbjct: 759 --KVGRLVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSV 816 Query: 895 ERIRESEIVD 904 +I++ E + Sbjct: 817 TKIKKEEGEE 826 >gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] Length = 823 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 375/907 (41%), Positives = 542/907 (59%), Gaps = 94/907 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V I+ EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 3 NEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R L+ G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L D+ K+TVDF PN+DG QEP V+ AR+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G +IDNP++ + LM I+GPDFPT +ILG+ GI++AY TGRG +++R Sbjct: 183 PHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTEIPYQVNKA ++E IA+LV++K+I I+D+RDESDR+G R+V Sbjct: 243 AKTDIEEEK-GRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +VILNQLY++T +Q F + M+AL KPE L IL ++ F++EV+ R Sbjct: 302 IELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ ++DEV+ +IR S N E A+ LM Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + LSE Q +AIL++RL RLTGL R+ I NE L I D+L Sbjct: 409 -------------NSFNLSEKQAQAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +L IIK+EL +K++ RRT I + ++ ED I +++VVT++H GY+KR+ Sbjct: 456 AKEELVLKIIKEELTEIKNKYGDDRRTEIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRI 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y AQ+RGGKG + +++DFV +F+ STH ++LFF++ G VYK K + LP Sbjct: 516 AADTYSAQKRGGKGIQAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G LIN+L + E+I ++ F E + Y + T+ G +++ ++S + I ++ Sbjct: 576 TAKGVNLINLLPIETNEKIQAVITFKEFD---KTNYFIMGTRQGLIKKTQVSQYSSIRKN 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V T E++IL+ TK G +RF +R GR + GV+ I+L K Sbjct: 633 GLNAINLREDDELIGVRMTTGESEILVFTKNGYAIRFNERDVRPM-GRTATGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++M IV Sbjct: 692 EDIAVAMDIVCEGQD--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE GFGKRT ++ R GKG+ +++ + GA+V V D D Sbjct: 707 --------VLVISENGFGKRTPVSEYTPHRRGGKGMITYKITE--KTGAIVGARVVKDED 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--------ESEIV 903 +++LV+ IR+ V+ I SR GV + T ++++VV++ +I E Sbjct: 757 EMMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDENVEKIAEEKD 816 Query: 904 DEAESTE 910 DE E Sbjct: 817 DEISENE 823 >gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] Length = 840 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 374/905 (41%), Positives = 554/905 (61%), Gaps = 90/905 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + + + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ Sbjct: 2 DENTIFDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 TNIP HNL EV++ + +IDN + ++ L+EII+GPDFPTGA ILGR+GI AY Sbjct: 182 TNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V+ IE + +++I+VTE+PY VNKA ++EKIA LVREK++ I +LRDE Sbjct: 242 TGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+ IEL+R A+A+VILNQLY++T LQ F V M+AL +P+ L +L ++ Sbjct: 302 SDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +++VV RRT+Y LNKA +RAH+L GL IA N+DEV++IIR + N + A+ ELM+R Sbjct: 362 THQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELMER-- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LS+ Q +AI+++RL L GL R + E L Sbjct: 420 ------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELME 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E IL+ +LLG+IK E+ ++D+ RRT+I + D+ ED I RE+ V+T+ Sbjct: 456 RIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITM 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LGY+KR+ + +++Q RGGKG G+ DED++ +LF+ +TH ++FF++ G VY+ K Sbjct: 516 TKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P ARG A++N+L L GE+IT ++P + E Y++ ATK+G V+++ + Sbjct: 576 AYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYE---EGKYLLMATKYGVVKKSSI 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++ I ++G A+ L D+++ V+ + D+ L TK GQC+RF S +R GR S+ Sbjct: 633 MEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSM 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI+L D+VI M + +A Sbjct: 692 GVRGINLTGDDEVIGMQLDSQGEA------------------------------------ 715 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +L VS G GKRT + +F +R GKGI+ +++ + G +V Sbjct: 716 -----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVV 756 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V VND+++I++++ +G +IR V+ I I R T GV + + ++ V S+ ++RE ++ Sbjct: 757 GVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKL 816 Query: 903 VDEAE 907 DE E Sbjct: 817 EDEME 821 >gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] Length = 835 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 392/892 (43%), Positives = 550/892 (61%), Gaps = 84/892 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ +V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +NK Y Sbjct: 4 EQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYK 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YD + R+AQD+++R L++GQGNFGS+DGD AA RYTE Sbjct: 64 KSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH LL DL K+TVDF PNYD S QEP+VL ++PN+LVNG GIAVGMAT IP Sbjct: 124 VRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG VA+ID+P +D + L +I GPDFPT ILGR GI+ AY TGRG + +R Sbjct: 184 HNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRA 243 Query: 253 VSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E RE+IVVTEIPYQVNKA ++EKIAELV+ ++I I+DLRDESDR+G RVV Sbjct: 244 RALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELK+ +VILNQLY+ T++QS F + M+A+ +P +L +L+ F+ R+E+V R Sbjct: 304 VELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R + L KA ++AH+L G IA+ NLDEV+ II+ S NP A++ LM+R Sbjct: 364 RCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMER----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AIL++RL RLTG+ RD I E + I +IL Sbjct: 413 ---------------FALSEIQAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +L IIK EL ++++ PRRT IV+ D+ ED IV EDMVVTVSH GY+KR Sbjct: 458 ASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRN 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 +S+YR+QRRGGKG +G+ ++EDFV LFI STH+ VL F+ G VY KV +P G Sbjct: 518 AVSLYRSQRRGGKGVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RGKA++N+L L GE +T+I+P E Y++FAT++G V++ L + Sbjct: 578 ASRGKAIVNLLQLQSGENVTSILPVREFT---EGRYIIFATQNGIVKKTDLMAYANPRSG 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ +D D ++S E D+LL ++ G+ +RFP R GR S GVRG++L Sbjct: 635 GIIALTIDEGDRLVSTRLSDGEMDVLLASQNGKAIRFPEKDARAM-GRTSRGVRGMALEG 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQVI M +V A + Sbjct: 694 DDQVIGMEVVSDTTAATLVTVT-------------------------------------- 715 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E G+GKRT+ ++R R GKGI S+ N G +V + +ND+ Sbjct: 716 -------------EHGYGKRTNLDEYRQQGRGGKGIITIKTSERN--GKVVDIKLINDDF 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++ ++D G ++R V ++ + R T+GV + ER+V+V ++ E E Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKEED 812 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y R GG + + D + + VL S G + Sbjct: 615 TQNGIVKKTDLMAYANPRSGGIIALTID--EGDRLVSTRLSDGEMDVLLASQNGKAIRFP 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +RG + ++L +++ + + ++ +HG +R L Sbjct: 673 EKDARAMGRTSRG---VRGMALEGDDQVIGMEVVSDTTAATLVTVT----EHGYGKRTNL 725 Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ Q R GK + + +++ ++ + D++ T G+ +R ++ + GR Sbjct: 726 DEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTRVADL-SVIGR 784 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 N+ GVR + L G++++++A + + D + + D E Sbjct: 785 NTQGVRLMVLEPGERIVAVAKLAEKEEDNGTAEAEEAALEGGTGEGAQDVE 835 >gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G+ +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + + D Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++++ EA+ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 908 S 908 Sbjct: 821 E 821 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ED +V V+ G +KR LS + R GK + RD+D + + + +L Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + K + S A A + + L G+ + + +D ++ Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + D+ G KL ++ + T + D+++ T G +R Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S I GR + GVR I L + V ++A V D + ++ + Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836 Query: 768 DTEEITSLKNDSSVEGNISEER 789 D + + E +S ER Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858 >gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 815 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 370/904 (40%), Positives = 561/904 (62%), Gaps = 89/904 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +++E + V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSDNNTNNEE---MRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G+ +K Y K + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R L++G GNFGS+ Sbjct: 58 NGLGLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K A +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG Sbjct: 118 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQ 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DG +A IDNP I + LM+ I+GPDFPTG +I+G+ GI+ Sbjct: 178 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRET 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I++R + IE+ + R +IV+TE+PY V K+ ++EKIAELVR+K I I+DLR Sbjct: 238 YETGRGKIIVRAKAEIEEHN-GRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR + V+LN+LY +T +Q F M+AL P+ +L I++ Sbjct: 297 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V + +V+ RRT++ L KA +RAH+L GL IA+ ++DEV+ +IR S A++ LM + Sbjct: 357 YVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDK 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q++AI+++RL RLTGL R + +ELN L Sbjct: 417 --------------------------FGLSDKQSQAIVDMRLGRLTGLERQKVEDELNEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I+E IL+ ++L IIK+EL +KD+ + R+T IV + +M+ ED + ED VV Sbjct: 451 YRKIEELKGILADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVV 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR+PL Y++Q+RGGKG SG+ R++DFV ++F +TH +LFF++ G VY Sbjct: 511 TMTHFGYIKRMPLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + +P QA+G A++N++ ++Q E+++ ++P + S YVV TK G +++ Sbjct: 571 LRTIDIPESGRQAKGTAIVNLIQIDQDEKVSAVIPIKK---SVKAKYVVMCTKKGIIKKT 627 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ DF +I +SG A+KLD DE+++V + +I++ T G C+RF + +R GR Sbjct: 628 EIDDFPKIKKSGNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPM-GRQ 686 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV ISL D V+ M Sbjct: 687 ARGVIAISLRDDDYVVEM------------------------------------------ 704 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L ++ IL V+E G+GKR+ ++R R+GKGI AT +++ + G Sbjct: 705 -----------DLINEDNEILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQ--KTGK 751 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV++ V++ D+++++S G LIR + +I R GV + +RVVS +I Sbjct: 752 LVSIMSVSEKDELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKIDND 811 Query: 901 EIVD 904 + + Sbjct: 812 DDQE 815 >gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 878 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G+ +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + + D Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++++ EA+ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 908 S 908 Sbjct: 821 E 821 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ED +V V+ G +KR LS + R GK + RD+D + + + +L Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + K + S A A + + L G+ + + +D ++ Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + D+ G KL ++ + T + D+++ T G +R Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S I GR + GVR I L + V ++A V D + ++ + Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836 Query: 768 DTEEITSLKNDSSVEGNISEER 789 D + + E +S ER Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858 >gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] Length = 893 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 393/912 (43%), Positives = 560/912 (61%), Gaps = 86/912 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E ++ ++ + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ Sbjct: 1 MKEELLMAELPQ-SRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGL 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+ Sbjct: 60 NEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSM 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG Sbjct: 120 DGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGAS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ A Sbjct: 180 GIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLR Sbjct: 240 YETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLR 299 Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE+ R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L Sbjct: 300 DETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALV 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L Q Sbjct: 360 HYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQ 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LSE Q +AIL++RL RLTGL RD I E N Sbjct: 420 R--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNE 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDM 538 L I E IL+ LL +++ EL ++D RRT I G ++EDED I E + Sbjct: 454 LLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQI 513 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+T+SH Y+KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G V Sbjct: 514 VITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRV 573 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YK K + +P S Q++G ++N + L E I+T++ + E + ++VFATK G V+ Sbjct: 574 YKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVK 631 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R+ LS+F +INR+GKIA+ DE+++V + + DIL+ T +RFP S +R G Sbjct: 632 RSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-G 690 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV+GI+L +GD+V+ + + D Sbjct: 691 RTATGVKGITLREGDEVVGLDVAHANSVDE------------------------------ 720 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L V+E G+GKRT D+R+SNR GKGI+ +++ N Sbjct: 721 ---------------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN-- 757 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +V + V + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 758 GNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 817 Query: 899 ESEIVDEAESTE 910 E + DE E Sbjct: 818 E-DAEDETNEDE 828 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 613 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 670 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 671 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 723 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 724 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 783 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 784 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 839 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 840 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 872 >gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102] gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102] Length = 923 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 370/906 (40%), Positives = 547/906 (60%), Gaps = 28/906 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I D + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSV 894 E +VS+ Sbjct: 885 ETLVSL 890 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 42/277 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + ++++D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEDDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623 S+LG + + S + N L Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768 Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L +I +++ F + ++L V+ AT +G +R ++D+ + N+ G+ + Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827 Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 +++ + ++ ++ +D++L T G +R + IR GR + GVR I+L +G+ Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 ++S+ V D + E Sbjct: 887 LVSLERVAEEAEDEAALESDAAENQVVETEDTPSQES 923 >gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 812 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 382/902 (42%), Positives = 557/902 (61%), Gaps = 90/902 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ EE + V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSDNT----NNEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G+ +K Y K + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R L++G GNFGS+ Sbjct: 57 NGLGLTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K A +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG Sbjct: 117 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQ 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DG +A IDNP I D LM I+GPDFPTG +I+G+ GI+ Sbjct: 177 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRET 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I++R + IE+ + R +IVVTE+PY V K+ ++EKIAELVR+K I I+DLR Sbjct: 237 YETGRGKIIVRAKAEIEEHN-GRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR + V+LN+LY +T +Q F M+AL P+ +L I++ Sbjct: 296 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V + +V+ RRTK+ L KA +RAH+L GL IA+ ++DEV+ +IR S A+ LM + Sbjct: 356 YVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AI+++RL RLTGL R I +ELN L Sbjct: 416 --------------------------FGLSDRQAQAIVDMRLGRLTGLERQKIEDELNDL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE ILS ++L IIK+EL VKD+ + RRT IV +++ ED + ED VV Sbjct: 450 YQKIKELKSILSDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR+PL Y+AQ+RGGKG SG+ R++DFV ++F +TH +LFF++ G VY Sbjct: 510 TMTHFGYIKRMPLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + +P QA+G A+IN++ ++Q E++ ++P + S N YVV TK+G +++ Sbjct: 570 LRTIDIPESGRQAKGTAIINLIQIDQDEKVNAVIPIKK---SHNAKYVVMCTKNGIIKKT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ DF +I +SG A+KLD DE+++V +I++ T G C+RF +R GR Sbjct: 627 EIDDFPKIKKSGNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPM-GRQ 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV ++L D V+ M Sbjct: 686 ARGVIAVTLRDDDYVVEM------------------------------------------ 703 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L +++ IL V+E G+GKR+ + ++R R+GKGI A ++K + G Sbjct: 704 -----------DLVDRDKDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITK--KTGK 750 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV++ V++ D+++++S G LIR + +I R T GV++ + +RVVS RI Sbjct: 751 LVSIMSVSEKDELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIAND 810 Query: 901 EI 902 E Sbjct: 811 EE 812 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 90/248 (36%), Gaps = 13/248 (5%) Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 ++ + R+ +A DE+ + E+ ++ T G R P+ A + Sbjct: 475 KDVKDKYSSGRRTHIVA----KEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKAQK- 529 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSL 775 R G+ GIS + D V ++ D ++ Y Sbjct: 530 RGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIIN 589 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + ++ + ++++ ++ G K+T DF + G A + Sbjct: 590 LIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKK--SGNTAIKL--- 644 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ L+ V + N +II+ + G IR + +R R +GV+ + D+ VV ++ Sbjct: 645 DDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVEMD 704 Query: 896 RIRESEIV 903 + + + Sbjct: 705 LVDRDKDI 712 >gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120] gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120] Length = 872 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 376/904 (41%), Positives = 539/904 (59%), Gaps = 42/904 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYT Sbjct: 64 KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG VAVI NP+I LM+ I GPDFPTGA ILG IK AY TGRGSI + Sbjct: 184 PPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV++IE DRE I++TE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR Sbjct: 244 RGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ L L F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + + TA+ EL+ Sbjct: 364 ESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELIT------- 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 T LSEVQ AIL+++L RLT L D IR E L +I + Sbjct: 417 -------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II+ E+ +K TPRRT I ++++ D I E ++ ++ G Sbjct: 458 LQDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G++ ++D+D + H SVLFFS G VY K +++ Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+GS +RG ++ +L + + E+IT+I+P E + Y+V TK GN+++ +L+ F Sbjct: 578 PLGSRTSRGTPIVQLLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTELAAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724 I +G IA+ L+ D++ V E+ I++ ++LG + F +R GR + GV Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD+++ M I+ A D + + D E N Sbjct: 694 KSMKLKKGDELVGMDILPAAILDTLNTE-----EPDIDDIETEDIETAVETTEVLETLEN 748 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 749 LEAVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATL 808 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN +++I++V+++G +IR VN I I SR+ GV + +D+ + V + + Sbjct: 809 GIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDE 868 Query: 905 EAES 908 E Sbjct: 869 EEAE 872 >gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] Length = 816 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 377/895 (42%), Positives = 547/895 (61%), Gaps = 86/895 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + V I +EM+ +YL YA++VI+ RA+PD+RDGLKPV RRIL+ + +G+ NK + Sbjct: 6 NNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPH 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG+ A+YD + RMAQ++S R L++G GNFGS+DGD AA RYT Sbjct: 66 KKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGM+TNIP Sbjct: 126 EVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG VA+IDNPD+++ LM+II+GPDFPTG +I+G+ I AY TGRG + +R Sbjct: 186 PHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G + IE+ + +I++TEIPYQVNKA ++EKIA LVR+++I I+DLRDESDR+G R+V Sbjct: 246 GKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+G VILN+LY+YT LQ + V M+AL P TL +L ++ ++EVV R Sbjct: 306 IELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L+KA RAH+L GL IA+AN+D++V++IR +P+ +TARR L++ Sbjct: 366 RTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIE------------ 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q AIL +RL RLTGL RD I E L +I IL Sbjct: 414 --------------NFNLTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +LLGIIK ELL +K++ RRT I +D++ ED I E +V+T++H GY+KR+ Sbjct: 460 ADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHHGYIKRM 519 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ +YR+QRRGGKG G+ ++EDFV +F STH LFF++ G VY+ +V+ +P S Sbjct: 520 PIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASR 579 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QARG A++N+L L + ERITT++P E + Y+V T++G +++ L+++ + Sbjct: 580 QARGTAIVNLLELEEEERITTVIPIREFD---EERYLVMVTRNGMIKKTPLAEYES-RYT 635 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G I + L DE++ V+ +++ T G+ + F + +R GR ++GV+ I+L Sbjct: 636 GLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSM-GRTAMGVKAITLED 694 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+ M + D Sbjct: 695 GDYVVGMGVDSEGDD--------------------------------------------- 709 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L ++EKG+GKRT ++R+ +R GKG+ ++++ N G L V V ++ Sbjct: 710 --------LLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN--GNLAGVKVVREDH 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +IL++ +G +IR V I R T GV + + +RVVS+ RI E E Sbjct: 760 DLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDIEE 814 >gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] Length = 816 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 374/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV NK Sbjct: 4 EPQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKP 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+A++YDA+ RMAQDWSLR L++GQGNFGS+DGD PAA RY Sbjct: 64 FKKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L DL KDTVDF+ N+D S QEP VL A+ P +L+NG GIAVGMATN+ Sbjct: 124 TEARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNM 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G +A I+N DI ++ LM+ I+GPDFPT +I G GI+ AY TGRG +++ Sbjct: 184 PPHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGSQGIREAYRTGRGKVLM 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE T +EQI+VTEIPY VNKA ++E+ A+LV EK+I I+D+RDESD+ G R+ Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V +LKR A V+LN LY+ TSLQ F VN VAL KP+ L +++ FVA R EV++ Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGKPQTLNLKELIQHFVAHRHEVLL 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R+TKY LN+A+ R H+L G IA+ NLD ++ +IR S + E A++ L+Q Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQ----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE Q +AILELRL RLTG+ RD I E I+ I Sbjct: 413 ---------------TYQLSEQQAKAILELRLQRLTGMERDKILQEHRETTQLIERLQLI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS R + +IK EL +K++ RRT I D+ ED I EDMV+T+S GY+KR Sbjct: 458 LSDRDLQMTLIKNELAELKEQYGDARRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS YR Q RGG G +++D++T LF+ STH +L F++LG V+ +KV+ LP GS Sbjct: 518 TPLSEYRIQNRGGVGARSTATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N++ + G+++ +++ DE+ N+ Y++ T G +++ L +I Sbjct: 578 KSSKGRAIQNLIPIAPGDQVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINP 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+K++ D +L+V+ +N +++ + G+ + F +R GR S GVRGI+ Sbjct: 638 RTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSM-GRVSTGVRGIT 696 Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA D+V+ M V D + Sbjct: 697 LAGPEDRVVGMVTVYKPDIE---------------------------------------- 716 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+EKG GKR++ D+RI+ R GKG++ ++++ + GAL A+ V Sbjct: 717 ------------LLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITE--KTGALAAIEAV 762 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D D++++++ G IR+ V+ +RI R T+GV + + + + S+ +I E+ Sbjct: 763 TDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIAKITEN 815 >gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] Length = 848 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 412/891 (46%), Positives = 612/891 (68%), Gaps = 44/891 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 K + + +I+DEM++SYL+YA++VI+ RA+PD RDGLKPVHRRI++ M + G +W+K++ Sbjct: 2 SSKNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQF 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L+EGQGNFGS+DGD AA RYT Sbjct: 62 RKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E +L K + FL+ D+ K+TV+F+ NYD + EPVVL A++PN+LVNG GGIAVGMATNIP Sbjct: 122 ETKLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A +DN I + +M+ I GPDFPTG +ILG+ IKN Y GRGSI IR Sbjct: 182 PHNLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIILGKNEIKNGYEKGRGSIKIR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+ S DR+ I++ +PYQVNK ++EKIA L+R+K++ IADLRDES+++G R+V Sbjct: 242 GEIEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL++G + ++I+NQLY+++ L+S F N +A+N KPE L ++ FV+FRE+ +++ Sbjct: 302 IELRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKKPELLNLKQFIEIFVSFREKTIIK 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+DR+H+L+GL IA+ N+DE++ IIR S P A+ L++++WN K + Sbjct: 362 RTLFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSK--L 419 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + + + LS+ Q +AIL+LRL +LT +G D+I NEL+ L I + IL Sbjct: 420 NKNILNINELSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKIL 479 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++ L+ +IK EL+ +K++ TPR+T+IV+ + +E ED I +E ++VTV++ GY+KR Sbjct: 480 NDKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRT 539 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P++ +AQ+RGG+G+ G+V R+EDFVT LF V+T T VLFFS+ G VYK K W++P GS Sbjct: 540 PITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGSN 599 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 Q++GK+L N+L ++ +++IMP PE+E+ W++L +VF TK G +R+N L DF I + Sbjct: 600 QSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQSN 659 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAMKLD DEI+SV+ D+++ + G+ +R IR+F GR+S GV+G++L Sbjct: 660 GKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLKN 719 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+VIS++I+ D+ Sbjct: 720 NDRVISLSILNPNIISSDK----------------------------------------D 739 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+K KE+FILT++E G+GKR+S+Y+FR + R G+GI ++ N G + A FP+ +D Sbjct: 740 EMKSKEEFILTITENGYGKRSSAYEFRETGRGGQGIINISTTERN--GNVAASFPIKSDD 797 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 I+LV+ KG +IRV VNEIR+A R T+GV IF T+ DE+VV+ R+ ++ Sbjct: 798 DIMLVTSKGQMIRVKVNEIRVAGRNTQGVRIFKTSSDEKVVTAVRLADNNE 848 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 +E I+ T G R PI+ I+ R G GI + D V + V Sbjct: 520 VIQKEQVIVTVTNKGYIKRTPITNIKAQK-RGGRGKIGIVTREEDFVTQLFSVNTLTPVL 578 Query: 749 DERICYMKHMSAQRRLISGDTEEITS------LKNDSSVEGNISEERCQELKLKEQFILT 802 + + ++ G + ++ S +I E + + I+ Sbjct: 579 FFSNKGIVYKLKTWKIPEGSNQSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVF 638 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +++ G ++ + DF+ +GK A + ++ +V+V + N+ +++ S G Sbjct: 639 ITKLGKIRKNNLEDFKNIQSNGK--IAMKL---DKEDEIVSVKLLKANEDVMINSYNGKS 693 Query: 863 IRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE---SEIVDEAESTE 910 +RV +IR+ R++KGV + ++RV+S+ + S DE +S E Sbjct: 694 LRVNSKKIRLFKGRSSKGVKGMNLKNNDRVISLSILNPNIISSDKDEMKSKE 745 >gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 848 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 374/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%) Query: 1 MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M E + + I ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G Sbjct: 1 MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M+ +GV K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R L++GQGN+GS Sbjct: 61 MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAA RYTE RL+K A +L D+ KDTVDF+ N+D S +EP VL R PN+LVNG Sbjct: 121 IDGDPPAAMRYTEARLKKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATN+ HNL EVVDG +A IDN +I++ LM+ I+GPDFPTG +I G G+K Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A TGRG +V+R + IE T RE I+VTEIPYQVNKA M+++ AELV EK+I I+++ Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL +P L ++ Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV R EVV+RRTK+ L +A RAH+L G IA+ +LDEV+++IR S PE AR LM+ Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LS++Q RAIL++ L RLTGL RD I+ E N Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I+ ++LS + IIK ELL +KD+ RR+ IV DM ED I E++V Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T+SH YVKR PLS Y+ Q RGG+G G R+EDF + S H +LFF+ G + Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657 + + +P GS +RG+AL NI+++ + E+I + D+ N +++ TK G + Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L + + +G A+ ++ D+++ ++I++ + G+ +RF S +R Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM- 693 Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRGI+LA + D+V+ M V + Sbjct: 694 GRTATGVRGITLAHEKDEVVGMISVNNP-------------------------------- 721 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 E +L VSEKG+GKRT D+R++NR GKG++ +V+ + Sbjct: 722 --------------------EVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + G LVA+ V D++ +++++ G +IR+ V ++R+ RAT+GV + + ++ + S+ + Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819 Query: 897 IR 898 + Sbjct: 820 VE 821 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 13/238 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G +K+ L Y R G + + + + D + + + + ++ Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANG--INAININEGDQLIEACLTDGSSEIVMALR 678 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + A G + ++L + + + V+ ++ Sbjct: 679 SGRAIRFNESTVRPMGRTATG---VRGITLAHEKDEV----VGMISVNNPEVTVLVVSEK 731 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + D+ NR GK ++ D E+++++ T D+++ K G +R ++ Sbjct: 732 GYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVA 791 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +RV GR + GVR I+L D++ S+ V + + I S + + + Sbjct: 792 DLRVM-GRATQGVRLINLKDNDEIASITKVEREEDEEITDIETEGEDSENTNIDTTEE 848 >gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 392/891 (43%), Positives = 557/891 (62%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++++ A+A VILN LY+ T LQS F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E N L IKE Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ LL +++ EL +K+ RRT I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ E + Y+VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNAIELENDETISTMIAVRNLE--SEDDYLVFATKRGIVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI Sbjct: 635 INKNGKIAISFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + Sbjct: 694 TLREGDEVVGLDVAH--------------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 709 ------AESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + + + V +V +++ Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVAKVK 811 >gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43] gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43] Length = 849 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 377/900 (41%), Positives = 549/900 (61%), Gaps = 86/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+ R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR+G R Sbjct: 242 VRAKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ ++ILN LY++T LQ F V M+AL + + L +L ++ F++EV+ Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 410 ---------------DEFNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LLG+IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D + M I + + Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE GFGKRT +++I +R G G+ +S+ + G LV Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +D+++L++ G IR+ V++I SRA GV + T ++E++V++ +I +S+ D E+ Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDEDLEENE 815 >gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114] gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114] Length = 923 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 370/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I D + + R Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + ++ + + E + + +LT + G+GKRT D+ N+ G+G Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + + Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884 Query: 889 ERVVSV 894 E +VS+ Sbjct: 885 ETLVSL 890 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 104/277 (37%), Gaps = 42/277 (15%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+V LS ++ R G + +++ D++ ++ F Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708 Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623 S+LG + + S + N L Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768 Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L +I +++ F + ++L V+ AT +G +R ++D+ + N+ G+ + Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827 Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 +++ + ++ ++ +D++L T G +R + IR GR + GVR I+L +G+ Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 ++S+ V D A + E Sbjct: 887 LVSLERVAEEAEDEAALENDAAENQAVEAEDTPSQES 923 >gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS] gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS] Length = 826 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 369/897 (41%), Positives = 533/897 (59%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K Y Sbjct: 2 QREKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL A PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ EVV G +A+I+NP+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR Sbjct: 182 PHNMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR+G R+ Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN A RAH+L GL I + NLDEV+ IR SP+ A+ LM R Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDR---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E Q++AILE+RL RLTG+ R I +E I+E I Sbjct: 412 ----------------FGLTEAQSKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S ++ + IIK ELL V D RRT + D ED I +ED+V+T++H G++KR Sbjct: 456 LESPAKQMEIIKAELLKVSDVYGDERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGG+G +G ++EDF+ +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L GE+I T + + + +++ AT G V++ L ++ R Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINVRNFD---DPHFIIMATAKGIVKKTSLEEYSHPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ +D DE++ ++ I+L G VRFP S +R GR ++GV+GI+L Sbjct: 633 TGINAITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + ++ ISM D Sbjct: 692 EDERCISMVTTKRNDTS------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ G+GKR+ D+R++ R +G+ + +IG LV + VND Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D +I+++ G +IR V++IR+ R T GV + +R+ + R+ +S+ E Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDDSATE 814 >gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] Length = 848 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 375/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%) Query: 1 MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M E + + I ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G Sbjct: 1 MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M+ +GV K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R L++GQGN+GS Sbjct: 61 MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPAA RYTE RL+K A +L D+ KDTVDF+ N+D S +EP VL R PN+LVNG Sbjct: 121 IDGDPPAAMRYTEARLKKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATN+ HNL EVVDG VA IDN +I++ LM+ I+GPDFPTG +I G G+K Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A TGRG +V+R + IE T RE I+VTEIPYQVNKA M+++ AELV EK+I I+++ Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL +P L ++ Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV R EVV+RRTK+ L +A RAH+L G IA+ +LDEV+++IR S PE AR LM+ Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LS++Q RAIL++ L RLTGL RD I+ E N Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I+ ++LS + IIK ELL +KD+ RR+ IV DM ED I E++V Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T+SH YVKR PLS Y+ Q RGG+G G R+EDF + S H +LFF+ G + Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657 + + +P GS +RG+AL NI+++ + E+I + D+ N +++ TK G + Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L + + +G A+ ++ D+++ ++I++ + G+ +RF S +R Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM- 693 Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRGI+LA + D+V+ M V + Sbjct: 694 GRTATGVRGITLAHEKDEVVGMISVNNP-------------------------------- 721 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 E +L VSEKG+GKRT D+R++NR GKG++ +V+ + Sbjct: 722 --------------------EVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + G LVA+ V D++ +++++ G +IR+ V ++R+ RAT+GV + + ++ + S+ + Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819 Query: 897 IR 898 + Sbjct: 820 VE 821 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 13/238 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + ++ + G +K+ L Y R G + + + + D + + + + ++ Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANG--INAININEGDQLIEACLTDGSSEIVMALR 678 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + A G + ++L + + + V+ ++ Sbjct: 679 SGRAIRFNESTVRPMGRTATG---VRGITLAHEKDEV----VGMISVNNPEVTVLVVSEK 731 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + D+ NR GK ++ D E+++++ T D+++ K G +R ++ Sbjct: 732 GYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVA 791 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +RV GR + GVR I+L D++ S+ V + + I S + + + Sbjct: 792 DLRVM-GRATQGVRLINLKDNDEIASITKVEREEDEEITDIETEGEDSENTNIDTTEE 848 >gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] Length = 882 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 373/905 (41%), Positives = 541/905 (59%), Gaps = 47/905 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 4 SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL +L D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+VDG VA+I NP+I LM I GPDFPTGA ILGR+GI+ AY TGRGSI + Sbjct: 184 PPHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR+ Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+EL+R A V+LN LY+ T LQ+ F NM+AL KPE TL L F+ FR Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 + + RRT+Y KA +R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 364 DTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL+++L RLT L I E L +I + Sbjct: 418 --------------------FGLSEPQADAILQMQLRRLTALEAQKIEQEHQELLAKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L I++QE +K TPRRT I ++ED D I E ++ ++ G Sbjct: 458 LNDILNRRERILEIVEQEAQEIKQRHGTPRRTEIELEESELEDTDLIANEKAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G+SG M+++D V H S++FF+ G Y K +++ Sbjct: 518 YIKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 PIGS ARG ++ +L + + E+IT+++ E N+ Y+V TK G +++ LS F Sbjct: 578 PIGSRIARGVPIVQMLPIPRDEKITSLVAVGEFS---NDEYLVMLTKGGYIKKTALSAFN 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724 I +G IA+ L+ DE+ V + ++ +++ ++LG + F +R GR + GV Sbjct: 635 NIRSNGIIAISLNEGDELRWVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L D++I M I+ ++ + + EE + + + Sbjct: 694 KAMKLKPDDELIGMDILPS----------FIVASIPKLGGEETEIEEEENTTVEEVDDTE 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E E++ IL ++ +G+GKR FR+ NR+GKGI AT +VA+ Sbjct: 744 SEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVAL 803 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V++ D+++L++ +G +IR ++ I SR GV + K++ + +V + S D Sbjct: 804 QVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGD 863 Query: 905 EAEST 909 + E Sbjct: 864 DTEVD 868 >gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 887 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 392/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G ++EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] Length = 872 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 377/904 (41%), Positives = 539/904 (59%), Gaps = 42/904 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYT Sbjct: 64 KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG VAVI NP+I LM+ I GPDFPTGA ILG IK AY TGRGSI + Sbjct: 184 PPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV++IE DRE I++TE+PYQ NKAA++EKIAELV EKRI IAD+RDESDR Sbjct: 244 RGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ TL L F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + + TA+ EL+ Sbjct: 364 ESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELIT------- 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 T LSEVQ AIL+++L RLT L D IR E L +I + Sbjct: 417 -------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II+ E+ +K TPRRT I ++++ D I E ++ ++ G Sbjct: 458 LQDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G++ ++D+D + H SVLFFS G VY K +++ Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S +RG ++ +L + + E+IT+I+P E + Y+V TK GN+++ +L+ F Sbjct: 578 PVSSRTSRGTPIVQLLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTELAAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724 I +G IA+ L+ D++ V E+ I++ ++LG + F +R GR + GV Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD+++ M I+ A D + + D E N Sbjct: 694 KSMKLKKGDELVGMDILPAAILDTLNTE-----EPDIDDIETEDIETAVETTEVLETLEN 748 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 749 LEAVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATL 808 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN +++I++V+++G +IR VN I I SR+ GV + +D+ + V + + Sbjct: 809 GIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDE 868 Query: 905 EAES 908 E Sbjct: 869 EEAE 872 >gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH] gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH] Length = 816 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 368/892 (41%), Positives = 551/892 (61%), Gaps = 87/892 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + VSI + + SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ Y K Sbjct: 2 QVIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKS 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+Y+AL RMAQ +S+R+ LI+GQGNFGS+DGD AA RYTE R Sbjct: 62 ARIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEAR 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++D + +IDN D L+ +++ ++GPDFPTG I G++GI AY TGRGSI IR Sbjct: 182 LEELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAKH 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HIE G++E IV+ E+P+QVNKA ++EKI++LV++K + I+++RDESDR+G RVVIEL Sbjct: 242 HIE-HKGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIEL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A +++ILN LY++T +Q F +NM+ + +P+ F L +L F+ R+ VV+RRT Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTI 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+ L+ R Sbjct: 361 YELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINR-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L++VQ +AIL++RLARLT L + + NE L +I+ IL Sbjct: 407 ------------FELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDE 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + L G+IK ELL +K + TPR T I E ++ ED I E+MVVT++H GYVKRVPL Sbjct: 455 NILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLK 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGGKG+ + + ++DF+ D ++ ++H +++ + G ++ KV+R+P GS ++ Sbjct: 515 AYERQNRGGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSK 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N+++L++ E+I TI+ + + + + F TK+G V+R LS+F I +G Sbjct: 575 GKAIVNLINLDKDEKIQTIIKTEDFD---ESKSLAFFTKNGIVKRTNLSEFKNIRSTGVR 631 Query: 675 AMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ +D DE+++ + + ++ + TK G +RFP+ +R GR + GV GI +G Sbjct: 632 AITIDEGDELVTAKIVEPGDKELFIVTKKGMAIRFPVDTVREM-GRTARGVTGIRFKIEG 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ + Sbjct: 691 DEVVGALALQD------------------------------------------------- 701 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + Q ILT+SEKGFGKRT + +R++NR GKG+ A ++ N+ G LV V + Sbjct: 702 ---ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEKDHD 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++++ G +IRV ++ I + T+GV + ++VVS+ + + + Sbjct: 757 LMVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEEE 808 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 114/245 (46%), Gaps = 30/245 (12%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L + DE++ + + + K RF ++ ++ + + + LA ++ Sbjct: 378 IALANIDEVVEIIKKSND---TKEAKENLINRFELTDVQ------AQAILDMRLA---RL 425 Query: 736 ISMAI--VLHADADYDERICYMKHMSAQRRLISG-------DTEEITSLKNDSSVEGNIS 786 S+ + + + + E+I Y+ + +++G + ++ +++E + Sbjct: 426 TSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLTNIEEDYD 485 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++L E+ ++T++ +G+ KR + NR GKG +A + + + I + Sbjct: 486 AIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDFIED---FYV 542 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 N +D +++++D+G L + V I SR +KG V + + KDE++ + I ++E Sbjct: 543 ANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQT---IIKTEDF 599 Query: 904 DEAES 908 DE++S Sbjct: 600 DESKS 604 >gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 390/901 (43%), Positives = 562/901 (62%), Gaps = 84/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G+ +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKEADVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + + D Sbjct: 694 RLRDGDEVIGLDVADDDNQDK--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++++ EA+ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 908 S 908 Sbjct: 821 E 821 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ED +V V+ G +KR LS + R GK + RD+D + + + +L Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + K + S A A + + L G+ + + +D ++ Sbjct: 665 IGTAQASLIRFKEADVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDK----ILV 717 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + D+ G KL ++ + T + D+++ T G +R Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S I GR + GVR I L + V ++A V D + ++ + Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836 Query: 768 DTEEITSLKNDSSVEGNISEER 789 D + + E +S ER Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858 >gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2] gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2] Length = 835 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 365/893 (40%), Positives = 542/893 (60%), Gaps = 86/893 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++E++ I I EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 2 AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++++Y+A+ RMAQD+S+R +L++G GNFGS+DGD AA Sbjct: 62 DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K A +L DL K+TVDF PNYDG +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG A+I NP+I L++ ++GPDFPT +++G +GI+ AY TGRG+ Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGT 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 + +R + IE+ ++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G Sbjct: 242 VTMRARATIEENG-NKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R + V+LN LY+ T +QS F +NM+AL +P+ + +L ++ + E Sbjct: 301 MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR L++R Sbjct: 361 VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIER------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS Q +AIL++RL RLTGL RD I E L +I E Sbjct: 414 -------------------FALSYEQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEY 454 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L II EL +K+ RRT I ++ DED I RED++++++H GY Sbjct: 455 KAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEEILDEDLIPREDVIISITHTGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ YR+Q+RGGKG G+ ++ DFV LF+ +TH +LFF++ G VY+ K + +P Sbjct: 515 IKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG +IN++ + QGE I ++P + + Y+ FAT+ G V++ L D++ Sbjct: 575 DLSRTARGTPIINLIQIEQGETINAVIPVESFD---SESYLFFATRQGIVKKTPLDDYMN 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I + G IA+ + DE++ V+ +I++ T G +RF +R GR++ GV+GI Sbjct: 632 IRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSM-GRSATGVKGI 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + Sbjct: 691 QL-----------------------------------------------------DDDDT 697 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ E +L V+ KG+GKRT ++RI NR GKGI+ +V+ N G +V++ V Sbjct: 698 VIDMDVVNPENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKN--GPIVSLKVV 755 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ +++++ GTLIR + I R T+GV + +T D+ V +V R+ S Sbjct: 756 LNDEDLMIMTALGTLIRTSMEGISTMGRNTQGVKLINTRDDDTVSTVTRVARS 808 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 15/244 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + E + + G VK+ PL Y R+ G + +R++D + + + + ++ Sbjct: 604 ESFDSESYLFFATRQGIVKKTPLDDYMNIRKVG--LIAISIREDDELIGVKLTDGNQEIV 661 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ G + + A G I + + + + P + V+ Sbjct: 662 MGTAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPEND---------VLI 712 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707 T G +R +S++ NR GK L+ D+ I+S++ + D+++ T LG +R Sbjct: 713 VTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTALGTLIR 772 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + I GRN+ GV+ I+ D V ++ V ++ + + + Sbjct: 773 TSMEGISTM-GRNTQGVKLINTRDDDTVSTVTRVARSEETDETFEEGEEFEGTAPDAGTE 831 Query: 768 DTEE 771 EE Sbjct: 832 PAEE 835 >gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus] gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189] Length = 887 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 372/897 (41%), Positives = 561/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ ++ Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus] Length = 889 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHENSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 108/273 (39%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G + ++L +G+ + + E+ V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHENSVDE----VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E + I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIESEETDDDGRI 866 >gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii] gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii] Length = 820 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 398/902 (44%), Positives = 560/902 (62%), Gaps = 87/902 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ + ++I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL GM +MG+ N+ Sbjct: 2 PPDERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K A+I GE+MG YHPHG++AIYD L RMAQ++++R +L++GQGN+GS+DGD AA RY Sbjct: 62 YRKSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A LL D+ K+TVDF PNYD S EP+VL +R PN+LVNG GGIAVG ATNI Sbjct: 122 TEARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNLGEV++G + +++NP++ + LM+ I GPDFPT I G +GIK+AY TGRG + + Sbjct: 182 PTHNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTV 241 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE DRE++++TEIPYQVNK+ ++EKIA+L +E R+ I+D+RDESDR+G R Sbjct: 242 RAKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR V+LN LY+++ LQ+ F VNM+AL +PE L IL+AFV R EVV Sbjct: 302 VVIELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT Y L KA +RAH+L GL IA+ NLD V+ +IR S +P+ AR LMQ+ Sbjct: 362 VRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q AILE+RL RLT L RD + E + I+ Sbjct: 413 -----------------FRLSEIQANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRS 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L S + + II+ EL +K++ RRT+IV+ ++ ED I E++VVT+SH GY+K Sbjct: 456 VLGSEALVRKIIRDELTEIKEKYQDERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +++YRAQRRGGKG+ + +++EDFV LF STH S+LFF+ G VY KV +P Sbjct: 516 RNAVTLYRAQRRGGKGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+GKAL+N+L+L++ E++T +P E + +V+ TK G +++ +LS + Sbjct: 576 SRAAKGKALVNLLALSKDEKVTATLPVKEYR---ADRFVIMGTKQGVIKKTELSAYSNPR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ LD+ D+++ V+ + +ILL TK G +RF +R GR + GVRGI+L Sbjct: 633 QGGIIALSLDAGDKLIGVDLTDGQREILLGTKQGITIRFKEEDVRAM-GRTAHGVRGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD+VI M + Sbjct: 692 EPGDEVIGMETITPDSTTA----------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ILTV+E G+GKRT ++R+ R GKGI + ++ N G V V D Sbjct: 711 ----------ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERN--GPAVGFLQVRD 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIV--DEA 906 D+I+L++ +G ++R V++IR R T+GV + D +RVV+V R+ E E +E Sbjct: 759 EDEIMLMAAQGKVLRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEG 818 Query: 907 ES 908 ES Sbjct: 819 ES 820 >gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 849 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 376/895 (42%), Positives = 547/895 (61%), Gaps = 86/895 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+ R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR+G R Sbjct: 242 VRAKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ ++ILN LY++T LQ F V M+AL + + L +L ++ F++EV+ Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 410 ---------------DEFNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LLG+IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTITD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D + M I + + Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE GFGKRT +++I +R G G+ +S+ + G LV Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +D+++L++ G IR+ V++I SRA GV + T ++E++V++ +I +S+ D Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDED 810 >gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803] gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803] Length = 843 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 374/903 (41%), Positives = 564/903 (62%), Gaps = 86/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG++++YD + RMAQ WS+R +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L DL K+TVD + N+D S EPVV+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+N DID+D L++ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 SH+E+ RE +VVTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G RVV Sbjct: 243 AKSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +LKR A +++LN L+++T+LQS FSVN +AL +PE L ++ FV R +VVVR Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGRPEMLNLKDLIYHFVEHRHDVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I++ IL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + +IK ELL VK++ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDERRSQIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ G R+EDF+ LF+ + H +LFF+ G Y +V+ +P GS Sbjct: 516 SLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+++++ +++ + + DE N+ +V+ ATK G V++ +L + + Sbjct: 576 ASKGRAIQNLINIDPEDKVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + ++L + G+ +RF S R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGNSQVMLGLRSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V ++D Sbjct: 695 ADDKDEVVGMIAVNDFESD----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR+S D+RI+NR GKG++ V++ + G LVA+ V+ Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAE 907 D D +++++ G +IR+ V ++R+ RAT+GV + + ++ + +V ++ E D E Sbjct: 761 DIDDLMIINKSGIVIRMAVEDLRVMGRATQGVRLINLKGNDAIAAVAKVLHDEDDLDSME 820 Query: 908 STE 910 E Sbjct: 821 DAE 823 >gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635] gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635] Length = 887 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTAHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSIDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 98/265 (36%), Gaps = 13/265 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 ++ + + L A G I + ++ + DE V+ Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSIDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V ++A V D Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTVSEDGTEQQHE 836 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + N E SEE ++ Sbjct: 837 AVVNDETPGNAIHTEVIESEETDED 861 >gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A Length = 889 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] Length = 811 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 372/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + +++ DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRI++ M +G+ +K + KC Sbjct: 5 KVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKC 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I GEV+ KYHPHG+ A+YDAL RMAQ +S+R L++G GNFGSVDGD AA RYTE R Sbjct: 65 AHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAR 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L D+ K+TVDF PNYD S +EP VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 125 MTKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DG + ++DNP+ D LM+ ++GPDFPT I+G GI +AY TGRGSI IR + Sbjct: 185 LAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQA 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ SG + +IVV EIPYQVNKA ++EKIAELVR+K+I I+DLRDESDR+G R+VIEL Sbjct: 245 EIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIEL 304 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR ++LNQLY++T +Q F V M+AL +P L +L ++ ++++++RRT Sbjct: 305 KRDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIRRTT 364 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA RAH++ GL IA+ANLDEV+ IR S E A++ L+++ Sbjct: 365 FDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEK-------------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q +AILE+RL RLTGL + + E L +I ILS Sbjct: 411 ------------FLLTEIQAQAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDE 458 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L IIK ELL ++ + RRT I + + ED I EDMV+T++ GY+KR+PL Sbjct: 459 GKILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLD 518 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGG+G S + ++++DF+ LFI STH +LFF++ G VY+ KV +P Q++ Sbjct: 519 TYRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSK 578 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A+IN+L + E++TT++P E + ++ TK+G V++ L++F R G I Sbjct: 579 GTAIINLLFVGTEEKVTTVIPVKEFN---KDEFLFMCTKNGIVKKTSLNEFDTSRRDGII 635 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD D+++ V + +I++ T+ G +RF +R GR + GVRGI L +GD Sbjct: 636 ALTLDDHDDLVDVRLTNGQEEIIIGTQKGLAIRFSEDDVRKL-GRIAKGVRGIGLIEGDF 694 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M V Sbjct: 695 VVGMDTVR---------------------------------------------------- 702 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E +L V++ GFGK+T ++R+ R GKGI +S N G +V++ V +++I+ Sbjct: 703 -NEGDLLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRN--GPVVSLLVVKPDEEIM 759 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++S +G +IR+ VNEI RAT+GV + + + V ++ ++ D Sbjct: 760 MLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKVNAEVDAD 809 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 59/389 (15%), Positives = 137/389 (35%), Gaps = 32/389 (8%) Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIKDLID 432 + RD + L +++ +++ II+ RR ++ A D++DLI Sbjct: 439 QEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIA 498 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 D + L + T + ++ +G + + + + Sbjct: 499 EEDMVITITRNGYIKRL-PLDTYRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFT 557 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSH 544 ++ ++ + E+ + + T I+ L +E +++ + + Sbjct: 558 NKGKVYRLKVHEIPEAGRQ---SKGTAIINLLFVGTEEKVTTVIPVKEFNKDEFLFMCTK 614 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G VK+ L+ + RR G + D+ L + ++ + G + Sbjct: 615 NGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRL--TNGQEEIIIGTQKGLAIRFSED 672 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + A+G I ++ + ++ N ++ TK+G ++ +S+ Sbjct: 673 DVRKLGRIAKGVRGIGLIEGD---------FVVGMDTVRNEGDLLVVTKNGFGKKTPISE 723 Query: 665 FIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + R GK + + D V + +I++ + G +R ++ I GR + Sbjct: 724 YRLQTRGGKGIINVKISDRNGPVVSLLVVKPDEEIMMLSSEGIIIRMKVNEI-STTGRAT 782 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750 GV + L+ GD V ++A V E Sbjct: 783 QGVTLMKLSSGDSVATIAKVNAEVDADVE 811 >gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1] gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] Length = 889 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193] Length = 889 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159] gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159] Length = 836 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 380/888 (42%), Positives = 531/888 (59%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E++ + +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+GM +MG+ N Sbjct: 8 EQQIGRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNA 67 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K A I GEV+ YHPHG++A+YDAL RM Q +++R LI+GQGNFGSVDGD AA R Sbjct: 68 KYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMR 127 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A LL D+ K TVDF PNYD S +EP VL AR PN+LVNG GIAVGMATN Sbjct: 128 YTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATN 187 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEVVD V +IDNP+ ++ L+E + GPDFPTG +ILGR GI AYATGRG IV Sbjct: 188 IPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIV 247 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +HIE+T R I+VTE+PYQVNKAA++E+IAELV+ R+ I DLRDESDR G R Sbjct: 248 VRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMR 307 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368 +VIELKR A +LN L+++T LQ+ F VNM+AL P TL +L+ ++ R++V Sbjct: 308 IVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQV 367 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L +A RAHVL GL IA+ +LDEV+ IR + + E AR++LM R Sbjct: 368 IRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMAR-------- 419 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E+Q AIL+++L RL L R I +E L I E Sbjct: 420 ------------------FNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELR 461 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +++L ++++ELL +K+ PRRT+I E ++ DED + R D++VT++ GYV Sbjct: 462 ALLADAAKILAVVRKELLELKERYGDPRRTQIQEASSEISDEDLVPRVDVIVTLTSRGYV 521 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR +R Q RGG+G +G+ +RDED + + + STH S+LFF++ G V++ + LP Sbjct: 522 KRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPD 581 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARG ++N L+L GE +TT++P + + ++ F T+ G V+R +L +F + Sbjct: 582 VGRNARGLPIVNFLNLQPGEEVTTLLPVRDFST---ATFLFFCTRQGRVKRVRLEEFSNV 638 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 SG IAM LD+ DE+ V + ++++L T GQ +RFP +R GR + GV G+ Sbjct: 639 RASGLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPM-GRQAGGVIGVR 697 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD VI+ +V Sbjct: 698 LDEGDAVIAAEVVRPEGD------------------------------------------ 715 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L VS+ G+GKRTS +FR R G G+ A V+ G + A Sbjct: 716 -----------LLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPR--TGHVAAATVAR 762 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + D ++LVS +G +I VPV +I R T+GV + + + V SV Sbjct: 763 EEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVAV 810 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 61/260 (23%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 +V T G V+R+ F +R G M + D I + + + +L T G+ Sbjct: 512 IVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRV 571 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 + P + GRN+ G V ++L G++V ++ V Sbjct: 572 FQLPTYEL-PDVGRNARGLPIVNFLNLQPGEEVTTLLPVRDFSTAT-------------- 616 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 F+ + +G KR +F SN Sbjct: 617 ------------------------------------FLFFCTRQGRVKRVRLEEF--SNV 638 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+ A + + L V P + +D++ILV+ G IR P +++R R GV+ Sbjct: 639 RASGLIAMSL---DAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIG 695 Query: 883 FSTAKDERVVSVERIRESEI 902 + + V++ E +R Sbjct: 696 VRLDEGDAVIAAEVVRPEGD 715 >gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] Length = 865 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 372/916 (40%), Positives = 539/916 (58%), Gaps = 61/916 (6%) Query: 1 MTEH-------IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + S D + I ++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVH Sbjct: 1 MADEQNPLLPLPPSGDGGNPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+ M MG+ N+K+VKCA++ GEV+GKYHPHG++A+YDA+ RMAQD+SLR L++G Sbjct: 61 RRILYAMHDMGLLHNRKHVKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGSVDGDPPAA RYTE R+ A LL D+ KDTVDF N+D + EP++L + PN Sbjct: 121 QGNFGSVDGDPPAAYRYTEARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +L+NG GIAVGMATNIP HNL E+VD C+ +++NP LD +++ ++GPDFPTG I G Sbjct: 181 LLINGSNGIAVGMATNIPPHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 + GIKNAY GRG ++R +E +++ IVVTEIPYQVNK+ +++KIA+LV +K I Sbjct: 241 KGGIKNAYQNGRGRFMMRAKVAVE-HLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTI 299 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +I+D+RDESDR G R+VIELKR A +++LNQLY++T +Q FS+ +A+ +P+ Sbjct: 300 DEISDVRDESDRDGMRIVIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMG 359 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L+ L F+ R +VV RRT YLL KA+DR H+L G +A+ +LD V+ IIR S N A Sbjct: 360 LVQALNHFIDHRIDVVRRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADA 419 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R L+ I+ + D S Q AILEL+L RLT L D+I Sbjct: 420 RENLVAYFTGKKIT------INTTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEI 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +EL + I E IL+S +L +I +EL ++ + RRT I + ++ ED I Sbjct: 474 TSELKDVRERIAEYESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E + VTVSH GY+KR P+S YR QRRGG GR G+ RDEDFV +F+ STH +L F+ Sbjct: 534 ADEQVAVTVSHSGYLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY KV+ +P + +GK + N+++L GE + I+P E + YV F T+ Sbjct: 594 NTGRVYWLKVYEVPEIAAAGKGKHIGNLVALQPGESVRAILPVKSLE--EESRYVFFTTR 651 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L DF + G IA+ +D DE+++ + + L + G +RF + + Sbjct: 652 KGTVKKTALVDFSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADV 711 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R+ GR + GVRG+ + D ++ MAI + Sbjct: 712 RIM-GRPAYGVRGMDIGAKDYIVGMAITPKERKKGKNGGADTAN---------------- 754 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 IL+V+E G+GKRT ++R+ R GKG+ + Sbjct: 755 -------------------------LILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTT 789 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +VA+ V ++ + +++S G +IR + IR A R+T+GV + ++V + Sbjct: 790 ERN--GKVVAIMLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAA 847 Query: 894 VERIRESEIVDEAEST 909 I + E EAE T Sbjct: 848 AVVIPDDEKA-EAEPT 862 >gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis] gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1] gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14] Length = 814 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 372/897 (41%), Positives = 561/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ ++ Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNGEAKIMTFALVDAAEIKEEKE 814 >gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244] gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244] Length = 909 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 376/898 (41%), Positives = 539/898 (60%), Gaps = 46/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ ++N+L L E IT I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L+ F I +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A S + + E S ND Sbjct: 720 TAKGVRGMR-------VSFA-------------------SNTIDVEDAEVENDDSDDNDD 753 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 S + N+ + + +L G+GKRT DF R GKG+ A S+ N G Sbjct: 754 SSDSNVVSRIVSLVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 811 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L++ +++ +++L+SD GTL+R E+ R +GV + + E +V V I Sbjct: 812 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 869 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 146/441 (33%), Gaps = 39/441 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + A L + ++Q+ +A + + +D Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDF 531 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + L+ QT L+ R ++ + +I + L + S+ + Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + + P+ +R +G + E + + Sbjct: 592 TVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFM 651 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VKRV L+ + R G + + +ED + + I + ++ FS+ G + Sbjct: 652 ATASGTVKRVELAQFSNIRANG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709 Query: 602 KVWRLPIGSPQARG------KALINILSLNQGERITTIMPFPEDESS------------W 643 + A+G N + + E +D S Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVP 769 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700 V+ A +G +R + DF R G IA+K E++S + + +++L + Sbjct: 770 ETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISAVSIDETKELMLIS 829 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G VR + + GRN+ GVR I L+ + ++ + + + D + + Sbjct: 830 DGGTLVRTRAAEV-ATTGRNAQGVRLIRLSDAETLVGVVSIEAVEEDEELETIEQSVENT 888 Query: 761 QRRLISGDTEEITSLKNDSSV 781 + ++ + + + Sbjct: 889 ELDAVNSEEALVEPKDDTPEA 909 >gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205] gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205] Length = 910 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 369/898 (41%), Positives = 530/898 (59%), Gaps = 45/898 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423 Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S LS Q AILELRL RLTGL +D + E Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S A+G+ ++N+L L E IT I+P E N YV AT G V+R Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFP---ENHYVFMATASGTVKR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +L F + +G A++L+ D ++ V I+L + G+ +RF + +R GR Sbjct: 661 VELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ +S A D + + ++ Sbjct: 720 TAKGVRGMR-------VSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVVPET 772 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L G+GKRT DF R GKG+ A S+ N G Sbjct: 773 GE------------------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 812 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L++ +++ +++L+SD GTL+R E+ R +GV + + E +V V I Sbjct: 813 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 870 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 63/442 (14%), Positives = 143/442 (32%), Gaps = 40/442 (9%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + + A L + ++Q+ +A + + +D Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDF 531 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + + L+ QT L+ R ++ + +I + L + S+ + Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + + P+ +R +G + E + + Sbjct: 592 TVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFM 651 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VKRV L + R G + + +ED + + I + ++ FS+ G + Sbjct: 652 ATASGTVKRVELEQFSNVRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709 Query: 602 KVWRLPIGSPQARG------KALINILSLNQGE-------------RITTIMPFPEDESS 642 + A+G N + + E + Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVV 769 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699 V+ A +G +R + DF R G IA+K E++S + + +++L Sbjct: 770 PETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISAVSIDETKELMLI 829 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G VR + + GRN+ GVR I L+ + ++ + + + D + + Sbjct: 830 SDGGTLVRTRAAEV-ATTGRNAQGVRLIRLSDAETLVGVVSIEAVEEDEELETIEQSVEN 888 Query: 760 AQRRLISGDTEEITSLKNDSSV 781 + ++ + + + Sbjct: 889 TELDAVNSEEALVEPKDDTPEA 910 >gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613] Length = 819 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 362/899 (40%), Positives = 552/899 (61%), Gaps = 86/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +IDN D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +IVVTEIPYQVNK+ ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++NI+ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLGDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I++E E Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDIIEEEILNE 815 >gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313] Length = 827 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 396/903 (43%), Positives = 571/903 (63%), Gaps = 94/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + +++ I V+I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSDTK----DVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G +K Y KCA GEV+GKYHPHG+AA+YD+L RMAQ++SLR I+G GNFGS+ Sbjct: 57 YGLGFTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K + +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG Sbjct: 117 DGDPPAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG + VID+P++ LD LM+II+GPDFPT +I+G+ GI++A Sbjct: 177 GIAVGMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATG+G I++R V+ IE+ G++++IVVTE+PYQVNKA ++E+IAELV+EKRI I+DLR Sbjct: 237 YATGKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLI 355 DESD+ G R+VIELK+ A+A+V+LNQLY+ T +Q F+VNMVAL ++P L Sbjct: 297 DESDKDGMRIVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLR 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 + ++ +E+V+VRRTK+ L+KA RAH+L GL IA+ NLDEV+ IIR S N A+ Sbjct: 357 QAIDYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKE 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+QR SE Q +AI+++RL RLT L R+ I N Sbjct: 417 ALIQR--------------------------FGFSEKQAQAIVDMRLGRLTALEREKIDN 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L EIK D+L+++S +L IIK+EL +K + RRT+I+ ++E ED I Sbjct: 451 EYKELLKEIKYYKDVLANKSMVLDIIKKELEEIKQKYGDERRTKIIPDEDEIEIEDLIEV 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E+ VVT++H GY+KR+P S Y++Q+RGGKG G+ R+EDFV LFI STH +LFF++ Sbjct: 511 EENVVTLTHFGYIKRLPTSTYKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + +P QA+G A++N+L L+Q E+ITT++P E + LY+ ATKHG Sbjct: 571 GKVYRLKTYEIPEAGRQAKGTAIVNLLQLDQNEKITTVIPISEYK---EGLYLFMATKHG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L +F I + G A+ L DE++ V +ILL T+ G +RF +R Sbjct: 628 IVKKTDLMEFDNIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRP 687 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV+GI+L + D+V+ M+ Sbjct: 688 L-GRAAQGVKGITLEEDDEVVGMSA----------------------------------- 711 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ +L V+E+GFGKRT ++++ R GKGI V++ Sbjct: 712 ------------------DIENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTE- 752 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G + + V+++D ++++S G++IR+ +I + RAT+GV + + VVSV Sbjct: 753 -KTGKVAGMKLVSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVA 811 Query: 896 RIR 898 RI Sbjct: 812 RIV 814 >gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] Length = 865 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 553/909 (60%), Gaps = 88/909 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ IS I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MSDQPISGGT----NIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV +NK Y K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR +++GQGNFGSV Sbjct: 57 EDLGVHYNKAYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL++ A +L D+ KDTVDF+PN+D S QEP VL ++ PN+L+NG Sbjct: 117 DGDSPAAMRYTEARLKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HN+ EV+DG +A IDN DI + LM ++GPDFPTGA I G GI++A Sbjct: 177 GIAVGMATNMAPHNITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIYGYQGIRSA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R S IE TS +EQI+V+EIPY VNKAAM+EKIA +V EK+I I+D+R Sbjct: 237 FETGRGRIVLRSRSTIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+V +LKR A A+V+LN L++Y+ LQS FSVN V L +P L ++ Sbjct: 297 DESDREGMRIVFDLKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGRPMTLNLKEMIMY 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RRT++ LN+A RAH+L G IA+ +LDEV+++IR S +PE AR LM Sbjct: 357 FVEHRHEVVTRRTQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMT- 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +SE+Q +A+L+LRL RLTG+ RD I E + Sbjct: 416 -------------------------NFGMSEIQAKAVLDLRLQRLTGMERDKIIKEYEEI 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I +IL+S+ + IIKQEL +K+ RR+ IV D+ ED I E MV+ Sbjct: 451 MALINRLKEILASKELRMEIIKQELDEMKERYGDKRRSDIVHASDDINIEDMIPEEQMVI 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR LS YR Q RGG G G ++ DF LF+ STH +LFF+ G V+ Sbjct: 511 TISHEGYIKRTALSEYRTQGRGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFW 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658 KV+ +P G +G+A+ N++ + G+++ T++ D+ NN Y+V T+ G ++ Sbjct: 571 LKVYEIPEGGKTTKGRAIQNVIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIK 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + G A+ + D +L V+ + +++++ + G+ +RF S +R G Sbjct: 631 KTTLEAYSRPRSGGINAITIHEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPM-G 689 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GV+G++LA D V+ + V D Sbjct: 690 RTAAGVKGVTLAHDKDVVVGLVAVSSPDTT------------------------------ 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L VSEKG+GKR+ D+R++NR GKG++ ++S+ + Sbjct: 720 ----------------------LLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISE--K 755 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV++ VND QI++++ G IR+ V+++R+ RAT+GV + + + SV + Sbjct: 756 TGDLVSILGVNDQYQIMIINKSGITIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVAKF 815 Query: 898 RESEIVDEA 906 ++I+DE Sbjct: 816 EFTDIIDEE 824 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 15/265 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D + + +V + G +K+ L Y R GG + + + + D + D+ + S ++ Sbjct: 612 DDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGG--INAITIHEGDRLLDVKMTSGSDELV 669 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 G + ++ A A + ++L + + S + ++ Sbjct: 670 IALRSGRAIRFNESKVRPMGRTA---AGVKGVTLAHDKDVV----VGLVAVSSPDTTLLV 722 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCV 706 ++ G +R+ + D+ NR GK L + D ++S+ + I++ K G + Sbjct: 723 VSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGD-LVSILGVNDQYQIMIINKSGITI 781 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R +S +RV GR + GVR I + GD + S+A D +E K + Sbjct: 782 RMAVSDLRVM-GRATQGVRLIKIQDGDSIASVAKFEFTDIIDEEGGELAKPDLGDVIVAE 840 Query: 767 GDTEEITSLKNDSSVEGNISEERCQ 791 + + + + +EE + Sbjct: 841 EGAADEAEDETEEDAAEDSTEESPE 865 >gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501] gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501] Length = 848 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 376/891 (42%), Positives = 550/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + R+AQDWS+R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ K+TVD + N+D S +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A ID+ DI ++ LM+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIYGYDGVKEAFETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ RE IVVTEIPYQVNKA M++K +L+ EK+I IA +RDES+R+G R+V Sbjct: 243 AKATFEEVQ-GRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+Y++LQS FSVN +AL G +PE L ++ FV R +VVVR Sbjct: 302 YVLKRDAIPNIVLNMLYKYSALQSSFSVNNIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L KA +RAH+L GL IA N+DEV+ IIR S N E AR L++R Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSEVQ RAI+E+RL +LTGL +D +R+E + I++ DIL Sbjct: 411 ---------------FELSEVQARAIVEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK EL V+D+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 AREERRMEIIKDELREVRDKYGDDRRSEINYAGGDLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G Y +V+ +P GS Sbjct: 516 PLTEYKTQHRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE N+ +V+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ + DE+L T + I L K G+ +RF S R GR++ GVRGI+L Sbjct: 636 QNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPM-GRSASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V D D Sbjct: 695 ADDNDEVIGMVSVHDFDED----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR+S D+RI+NR GKG++ +SK + G LVA+ V+ Sbjct: 714 -----------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISK--KTGGLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D+D +++++ G IR+ V ++R RAT+GV + + ++ + +V ++ + Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVAKVMK 811 >gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 371/897 (41%), Positives = 560/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS M+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ ++ Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132] gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] Length = 887 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 392/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G ++EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] Length = 894 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 383/900 (42%), Positives = 549/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 5 PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + + NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R Sbjct: 185 PHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 + IE+ G R++IVVTEIPYQVNKA M+EKIAELVR+K++ I DLRDE+ R G RV Sbjct: 245 ARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++++ A+A+VILN LY+ T LQ+ F NM+AL +P+ L L ++ ++ VV Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E Q +AIL++RL RLTGL RD I E N L I E I Sbjct: 415 ----------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ LL +++ EL +K+ RRT I G+ ++EDED I E +V+T+SH Y+K Sbjct: 459 LADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 519 RLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q++G ++N + L E I+T++ + E Y++FATK+G V+R+ LS+F IN Sbjct: 579 SRQSKGIPVVNAIELANDESISTMIAVNDLE--SEGNYLIFATKNGIVKRSALSNFSHIN 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++GKIA+ DE+++V + DIL+ T +RF +++R GR + GV+GI+L Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD V+ + + Sbjct: 696 REGDTVVGLDVAHS---------------------------------------------- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -----ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTG 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++V++ G +IR+ V +I RA +GV + ++ V +V +++ DE Sbjct: 763 EEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQSEA 822 >gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] Length = 830 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 380/891 (42%), Positives = 553/891 (62%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE +SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M ++ EWNK Sbjct: 2 EETAVRHEEISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+S+R +L++GQGNFGSVDGD PAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+QK AH +L+D+ K+TVD NYD S EP+VL +R P +L+NG GIAVGMATN Sbjct: 122 YTEVRMQKLAHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV D A+IDNPD+ ++ALM+ + GPDFPT +I G GI YATGRG I Sbjct: 182 IPPHNLSEVADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIR 241 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +EK D E IVV E+PYQVNKA ++EK+AELV++K I I +RDESD++G Sbjct: 242 VRGRVFVEKGKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I LKR ADV++NQLY++T L++ F +NM+A+ +PE TL IL+ F+ R+E+ Sbjct: 302 RIAIGLKRNQFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 +VRRT++ L KA +RAH+L GL IA+ NLDEVV +IR S +P AR LM++ Sbjct: 362 IVRRTRFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQ-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+++Q +AIL++RL +LTGL R+ I E +I Sbjct: 414 ------------------FGLTQIQAQAILDMRLQKLTGLEREKIIEEYKETLKQIAWFN 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL S +L +IK+EL +K E RRT+I+ ++ ED I RE+MVVTVS GY+ Sbjct: 456 EILGSERIVLDLIKKELADLKAEFGDERRTQIMGQKKEILLEDMIAREEMVVTVSRAGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P+++YR QRRGG+G++ + R++DFV LF+ S+H + LFF++ G V+ KV+ +P Sbjct: 516 KRNPITLYRKQRRGGRGKTAMGTREDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 +RG A++N+L+ N+GE + T++ PE L+V+ AT+ G V++ + D+ + Sbjct: 576 AGRASRGTAIVNLLNFNEGEDLATVLSVPEFS---PGLFVLMATRKGMVKKTDIMDYSRP 632 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA+ L DE+++V ++ L ++ G+ VRF S +R GR + GV+G++ Sbjct: 633 RSGGLIALGLADGDELIAVRITDGSWNVFLGSQNGKSVRFLESDVRPM-GRLARGVKGMT 691 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L K D V+ M ++ H + Sbjct: 692 LEKDDHVVGMEVLSHGNT------------------------------------------ 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++T++E G+GKRT ++ ++ R GKG+ +K N G +VA+ V Sbjct: 710 -----------LMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRN--GKVVAILLVE 756 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++D++++++D+G LIR+PV + + SR T+GV + + E V R+ E Sbjct: 757 NDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLAE 807 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G VK+ + Y R GG + + D D + + I +V S G Sbjct: 611 FVLMATRKGMVKKTDIMDYSRPRSGG--LIALGLADGDELIAVRITDGSWNVFLGSQNGK 668 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + ARG + ++L + + + + ++ T++G Sbjct: 669 SVRFLESDVRPMGRLARG---VKGMTLEKDDHVVGMEVLSH------GNTLMTITENGYG 719 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ ++ R GK + + +++++ ++++++ T G+ +R P+ + Sbjct: 720 KRTEIDEYPVNRRGGKGVITIKTTKRNGKVVAILLVENDDELMIMTDRGKLIRIPVGGVS 779 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 V + RN+ GVR I + +G+ V A + + D ++ Sbjct: 780 VIS-RNTQGVRLIGMEEGETVTGAARLAEKEDDENDDSGDDGAALTNGEGDE 830 >gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] Length = 865 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 380/899 (42%), Positives = 545/899 (60%), Gaps = 84/899 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I ++I DEM+++Y+ YA++VI+ RA+PD+RDGLKPVHRR+L+GM +G+ +NK Sbjct: 3 ESSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+A++YD + RMAQ WSLR L++GQGNFGS+DGD PAA RY Sbjct: 63 FKKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL++ A LL DL KDT+DF+PN+D S +EP VL + P++L+NG GIAVGMATN+ Sbjct: 123 TEARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVVDG +A +DN DI ++ L++ I PDFPTG +I G G+K A TGRG +VI Sbjct: 183 PPHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RGV+ IE T RE+I+VTEIPY VNKA ++EK A LV+EKRI I+D+RDESDR G R+ Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V ELKR A V LNQLY+YT+LQS F VN VAL +PE L ++ FV R EV+ Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVIY 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L +A+ R H+L GL IA+ N+DEV+ +IR S + ETA+ L+++ Sbjct: 363 RRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEK---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL RLT + RD I E + IKE I Sbjct: 413 ----------------FELSEIQAKAILDIRLQRLTAMERDKIVAEHKQISELIKELEAI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + + IIK+EL +KD RRT I D+ DED I E+MV+T+SH GY+KR Sbjct: 457 LADKLLRVDIIKEELTEMKDRYGDARRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 L YR Q RGG G G +D+DF LF+ STH +L F++ G V+ K + +P + Sbjct: 517 TSLDEYRTQNRGGVGSRGTSKKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVA 576 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G+A+ N+L + +G+ I ++ +D N Y+V T+ G +++ +L F + Sbjct: 577 KTAKGRAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRP 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ ++ D++L V+ EN+I+L + G+ + F +R GR + GVRGI+ Sbjct: 637 RQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSM-GRTAAGVRGIT 695 Query: 729 LAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D +V+ M V DA Sbjct: 696 LDGDDNRVVGMVCVARDDAS---------------------------------------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L VSE G+GKR+S D+RI+NR GKG+ ++ ++ G LVA+ Sbjct: 716 ------------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQIT--DKTGRLVAIKEA 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D D +IL++ G IR+ ++++R+ RAT+GV + +D+ + SV ++ ++ + Sbjct: 762 VDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKVDAESLLSDD 820 >gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 884 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + V+E Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820 Query: 907 EST 909 E + Sbjct: 821 EQS 823 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L DQ +S + DAD Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + N E SEE ++ Sbjct: 836 AVVSDEAPGNAIHTEVIDSEENDED 860 >gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] Length = 894 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 383/900 (42%), Positives = 549/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 5 PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + + NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R Sbjct: 185 PHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 + IE+ G R++IVVTEIPYQVNKA M+EKIAELVR+K++ I DLRDE+ R G RV Sbjct: 245 ARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++++ A+A+VILN LY+ T LQ+ F NM+AL +P+ L L ++ ++ VV Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E Q +AIL++RL RLTGL RD I E N L I E I Sbjct: 415 ----------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ LL +++ EL +K+ RRT I G+ ++EDED I E +V+T+SH Y+K Sbjct: 459 LADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 519 RLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q++G ++N + L E I+T++ + E Y++FATK+G V+R+ LS+F IN Sbjct: 579 SRQSKGIPVVNAIELANDESISTMIAVNDLE--SEGNYLIFATKNGIVKRSALSNFSHIN 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++GKIA+ DE+++V + DIL+ T +RF +++R GR + GV+GI+L Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD V+ + + Sbjct: 696 REGDTVVGLDVAHS---------------------------------------------- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V Sbjct: 710 -----ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTG 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++V++ G +IR+ V +I RA +GV + ++ V +V +++ DE Sbjct: 763 EEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQSEA 822 >gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B] gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B] Length = 849 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 373/895 (41%), Positives = 545/895 (60%), Gaps = 86/895 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR S+IE+ R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR G R Sbjct: 242 IRAKSNIEE-ENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+ A+ ++ILN LY++T LQ F V M+AL + + L +L +V F++EV+ Sbjct: 301 IVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 410 ---------------DEFALSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LL +IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLEVIKNELLEIKAKYGDERRTSIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEPDEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D + M I + + Sbjct: 691 KGDDIAVCMDIAVDEE-------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE GFGKRT ++++ +R G G+ +S+ + G LV Sbjct: 707 ---------ELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISE--KTGKLVGATICKL 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +D+++L++ G IR+ V++I SR+ GV + T ++E++V++ +I + + D Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKILKGDDED 810 >gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] Length = 828 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 368/901 (40%), Positives = 544/901 (60%), Gaps = 85/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S E + I + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+ Sbjct: 2 STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R LI+G GNFGSVDGD AA Sbjct: 62 NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K ++L D+ KDTVDF+PNYD QEP V+ A++PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV++G +A IDNP+I++ LM I+GPDFPTGA I+G GI +AY TG+GS Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGS 241 Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 R +H+E+ + +I+VTEIPY VNKA ++EKIAELVREKRI I DLRDESDR Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+EL+R + V+LNQLY++T ++ F VN++AL +P+ L I+ F+ ++ Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA AH+L GL IA+ +DEV+ IIR S + ++A+ LM R Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+ Q++AI+++RL RLTGL R+ I + + I Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +L+S +L IIKQEL VK++ RRT I M ED I E++V+T+SH G Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+PL+ Y++QRRGGKG G+ R+EDFV +F STH +LFF++ G VY+ K + Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +G AL+N+LS+N E I + ++ AT+ G V++ L ++ Sbjct: 576 PEAGRTGKGTALVNLLSINPSEE--KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYD 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G IA+ L DE++ V + I++ TK G C+RF S +R GR + GV+G Sbjct: 634 SPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKG 692 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL K D V+SM ++ +A+ Sbjct: 693 ISLEKEDLVVSMDVIYEEEAE--------------------------------------- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL+++E GF KRTS ++R+ R GKGI AT ++ + G LV + Sbjct: 714 -------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLKV 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + + ++++++ G +IR V+ I R+ +GV+ T + +VV++ + E +E+ Sbjct: 759 MRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTGES-KVVAIAVVDNKEDAEES 817 Query: 907 E 907 + Sbjct: 818 D 818 >gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132] gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132] Length = 837 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 372/899 (41%), Positives = 549/899 (61%), Gaps = 85/899 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+ + E I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM Sbjct: 1 MAENN--ENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV N+ Y K ARI GEV+GKYHPHG++++YD + RMAQDWSLR L++GQGNFGSV Sbjct: 59 SELGVYHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL++ A +L D+ K+TVDFR N+D S QEP VL +R PN+L+NG Sbjct: 119 DGDSPAAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HNL EV +G A IDNP+I ++ LM I+ PDFPTG +I G G+K A Sbjct: 179 GIAVGMATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYGYGGVKAA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG +VIR V++ E + +EQIVVTEIPY VNKAAM+EK AELV +K+I I+ +R Sbjct: 239 FETGRGRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQG R+V +LK+ A +V+LN LY+YT LQ+ FS+N VAL KPE L +++ Sbjct: 299 DESDRQGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVHGKPETLNLKQLIEH 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V R +V+ RRT+Y L +A RAH+L GL IA+ +LDEV+ +IR S +P+ AR LM++ Sbjct: 359 YVKHRLDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEK 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q RAIL++RL RLTGL RD I E + Sbjct: 419 --------------------------FALSEIQARAILDMRLQRLTGLERDKITEEYKQI 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+E IL+S + +IK +LL +K + RR++I + ED I ++M+V Sbjct: 453 KALIEELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNIEDMIPDDEMLV 512 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR LS Y++Q RGG G GV +D+D+ LF+ + H +LFF+ G +Y Sbjct: 513 TVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYW 572 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658 +V+ +P G+ ++G+A+ N++++ ++I ++ DE N Y+V T++G V+ Sbjct: 573 LRVFEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVK 632 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + ++G IA+ ++ D+++ V + I++ G+ VRF S IR G Sbjct: 633 KTLLEMYSRPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPM-G 691 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV+GISLA+ D+ I M V Sbjct: 692 RGATGVKGISLAEDDKAIGMICVNRP---------------------------------- 717 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + +L VSEKG+GKR+ D+RI++R KG++ ++S+ ++ Sbjct: 718 ------------------DAQLLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSE--KV 757 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA+ V D D +++++ +G IR+ V+++R+ R T+GV + + + S+ RI Sbjct: 758 GNLVAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASITRI 816 Score = 88.7 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 101/235 (42%), Gaps = 15/235 (6%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733 + LD DE++S+ +++ D + G +F +S I+ R + +R L + D Sbjct: 390 IALDHLDEVISLIRSSKDPD---EARNGLMEKFALSEIQA---RAILDMRLQRLTGLERD 443 Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 ++ + + + + + + D + + S +E E ++ Sbjct: 444 KITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNIED 503 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++ ++TV+ +G+ KRT+ +++ +R G G R + L F +++ Sbjct: 504 MIPDDEMLVTVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHL---FMATNHNY 560 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 ++ ++KG L + V E+ ++ +KG + + D+++ +V ++ D Sbjct: 561 LLFFTEKGRLYWLRVFEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDED 615 >gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum] Length = 887 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 392/903 (43%), Positives = 553/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D++DED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLDDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 >gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11] gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46] Length = 886 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + V+E Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820 Query: 907 EST 909 E + Sbjct: 821 EQS 823 >gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981] gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172] Length = 889 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] Length = 831 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 375/902 (41%), Positives = 549/902 (60%), Gaps = 85/902 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ N Sbjct: 2 SEGDKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTA 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR LL++GQGNFGSVDGD PAA RY Sbjct: 62 HKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+QK + LL D+ K+TVD + N+D + +EP VL R PN+L+NG GIAVGMATN+ Sbjct: 122 TEARMQKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVVDG + I+N DI ++ L++ I+ PDFPTG I G G++ A+ TGRG IVI Sbjct: 182 PPHNLTEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIYGYDGVREAFLTGRGRIVI 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R ++IE+ + RE I+VTEIPYQVNKA M+ K AE+V +K++ I+ +RDESDR G R+ Sbjct: 242 RAKANIEEVN-GRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LKR A +++LN+LY+YT+LQS FSVN +AL +P+ L ++ FV R +VVV Sbjct: 301 VYILKRDAVPNIVLNKLYKYTALQSSFSVNNIALVKGRPQMLNLKEMIHHFVEHRHDVVV 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA DRAH+L GL IA N+DEV++IIR S + + AR L+++ Sbjct: 361 RRTQFELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQ---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AI+E+RL +LTGL +D +R E N L + I + DI Sbjct: 411 ----------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + R + IIK EL+ +KD+ RR+ I D ED I E +V+T+SH GY+KR Sbjct: 455 LDKKERRMEIIKLELVEIKDKYGDERRSNIEYAGGDFSMEDMIPDEQVVITISHAGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PL Y+ Q RGG G+ RDEDF+ DLF+ + H +LFF+ G + +V+ +P GS Sbjct: 515 TPLIEYKTQNRGGVGQKASTTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGS 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G+A+ N++++ Q +++ + + DE NN YV+ ATK G V++ L + + Sbjct: 575 KTAKGRAIQNLINIEQDDKVQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ + DE+L + + ++L K G+ +RF S R GR + GVRGI+ Sbjct: 635 RANGINAINVREDDELLEAKLTNGNSHVMLAVKSGKAIRFEESKTRPM-GRGASGVRGIT 693 Query: 729 LAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA D+V+ M V DA+ Sbjct: 694 LADSKDEVVGMVAVNDMDAN---------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL VSE G+GKR+S D+RI+NR GKG++ ++ ++ G LV + V Sbjct: 714 ------------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISIT--DKTGKLVTIKTV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D +++++ G IR+ V +R+ RAT+GV + + D+ + +V ++ + E Sbjct: 760 TDTDDLMIINKSGIAIRMEVAALRVMGRATQGVRLINLKGDDTIAAVAKVMNDDTPIEDV 819 Query: 908 ST 909 + Sbjct: 820 ND 821 >gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] Length = 868 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica OSU18] gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 868 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133] Length = 886 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + V+E Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820 Query: 907 EST 909 E + Sbjct: 821 EQS 823 >gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus] Length = 886 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 392/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL R+ I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERNKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + V+E Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820 Query: 907 EST 909 E + Sbjct: 821 EQS 823 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L DQ +S + DAD Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + N E SEE ++ Sbjct: 836 AVVNDETPGNAIHTEVIDSEENDED 860 >gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus aureus subsp. aureus JKD6159] Length = 886 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + V+E Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820 Query: 907 EST 909 E + Sbjct: 821 EQS 823 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L DQ +S + DAD Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + N E SEE ++ Sbjct: 836 AVVNDETPGNAIHTEVIDSEENDED 860 >gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68] gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3] gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis] gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3] Length = 814 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 371/897 (41%), Positives = 560/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ ++ Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] Length = 889 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A + L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1] gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1] Length = 853 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 374/903 (41%), Positives = 541/903 (59%), Gaps = 62/903 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I + +E+ SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 6 DSSRIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPF 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG++A+YDAL RMAQD+S+R LIEG GNFGS+D DPPAA RYT Sbjct: 66 RKCARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYT 125 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ A LL D+ ++TVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 126 ECRLQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VDG VA+I +P + LM I GPDFPTG ILG+ GI+ AY TGRGS+ + Sbjct: 186 PPHNLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTL 245 Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 R V+ IE RE I++TE+PYQ NKAA++EKIAELV EK+I IADLRDESDR Sbjct: 246 RAVATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRD 305 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR A V+LN LY+ T LQ F NM+A+ +P+ TL L+ F+ FRE Sbjct: 306 GIRVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFRE 365 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL +A+ANLD V+++IR + + AR++LMQ Sbjct: 366 EAIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQ------- 418 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 T LSE Q AIL+++L RLT L + I E L +I + Sbjct: 419 -------------------TYALSEAQADAILQMQLRRLTALEAEKIEREHAELQRQIAD 459 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II++E+ +K + TPRR+RIV+ ++ D D I + V+ V+ G Sbjct: 460 YRDILAHRQRVLEIIEKEVTELKAKFATPRRSRIVQADGEISDIDLIANDKSVILVTQQG 519 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+ + AQ R G+GR G ++++D V F + H +LFFS G VY +++ Sbjct: 520 YIKRMPVDTFEAQSRDGRGRKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQI 579 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS QARG ++ +L + + E+IT+++ E + Y+V T+ G +++ L+ F Sbjct: 580 PSGSRQARGTPIVQLLPIPREEKITSVIAVQEFS---EDEYLVMLTRKGFIKKTPLAAFS 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L+ D++ V +++ I++ ++ G + F S +R GR + GV Sbjct: 637 HIRSNGLIAISLEEGDQLRWVRRTREQDTIIIGSRQGMAIHFRASHDQLRPL-GRATRGV 695 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + ++L GD+++ M I+ A A+ G Sbjct: 696 KSMNLRPGDELVGMDILPAAIANRFATPS-------------------------EDDSGE 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I + + ++L ++ G+GKR FR+ NR+G GI AT + L A+ Sbjct: 731 IEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAAL 790 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN D++++V+ +G +IR V +I SR+ GV + +D+ +V+ + + Sbjct: 791 RIVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTAAVLPPGSMEA 850 Query: 905 EAE 907 A+ Sbjct: 851 AAD 853 >gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 400/899 (44%), Positives = 561/899 (62%), Gaps = 74/899 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+ + + I +VSI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R L++GQGNFGSV Sbjct: 60 RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + L+ DL K+TVDF P YD S EP+V AR PN+LVNG Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG I GR GI+ A Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++IR HIEK RE IV+TEIPYQ NK+ +LEKIA L++EKRI IA+ R Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELK+ A+V++NQLY+ T LQ F + M+++ +PE L IL+ Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR L+ R Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS +Q +AILE+RL RLTGL R+ I E ++L Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +L S ++ II++E ++++ RRT I++ ++ ED I RE+MVV Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KR P+ YR+QRRGGKG G DEDFV+ + + STH ++LFFS+ G V+ Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRR 659 KV+ +P ARGKA++N+L L E++ I+P E + Y++ ATK G V++ Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F + + GKIA+ + DEIL T +N++LL ++ G VRF IR GR Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAM-GR 692 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+LA GD+ Sbjct: 693 GASGVRGITLAAGDE-------------------------------------------QK 709 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + E IL VSE GFGKR+ ++R+ R GKG+ A S+ N G Sbjct: 710 GIPADELIGLQVLSGDPEASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERN--G 767 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V + V D+DQ+++++++G +IR+P+ IR+ R+T+GV +F+ +E+VV+++R+ Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826 Score = 86.8 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 20/214 (9%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754 + G RF +SAI+ + + + L + +++I ++ + + Sbjct: 413 REGLINRFGLSAIQ------AQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGD 466 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + R E + + E +++ +E+ ++TV+ G+ KR Sbjct: 467 ESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVVTVTHAGYIKRNPV 526 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873 +R R GKGI+ + + V+ V D ++ S+KG + V EI A Sbjct: 527 DTYRSQRRGGKGIKGAGTTDEDF----VSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQA 582 Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 R +G V + +E+V ++ + E+ + Sbjct: 583 GRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616 >gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] Length = 814 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 383/887 (43%), Positives = 539/887 (60%), Gaps = 85/887 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I V + +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+ +K Sbjct: 12 ETSGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKP 71 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K A + G V+ +YHPHG+AA+Y+ + R+AQD++ R LI+G GNFGSVDGD PAA RY Sbjct: 72 YKKSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRY 131 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ KDTVDF NYDGS +EPVVL AR P +LVNG GIAVGMATNI Sbjct: 132 TEARLSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNI 191 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D V +ID PD DL + +II+GPDFPT +I+GR GI+NAY TGRGSI + Sbjct: 192 PPHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKV 251 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E S + QIVVTEIPYQVNKA +++ I +LVREK+I I DLRDESDR G R+ Sbjct: 252 RAKAQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRI 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R VILNQLY++T +Q F V M+AL +P L +L ++ ++EV+ Sbjct: 312 VIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEVIT 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL +A RAH++ GL IA+ LDEV+RIIR +PN A R LM+R Sbjct: 372 RRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMER---------- 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL RLT L R+ + E L I ++ Sbjct: 422 ----------------FQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEV 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S +R+ I++ ELL +K + PRRT+IV ++E ED I RED+VVT++H GY+KR Sbjct: 466 LASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+ YR+Q+RGG+G + R+ED V D+F+ +TH +LFF++ G V++ + +P Sbjct: 526 QPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAG 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QARG L+N+L LN+GE IT ++P E E + Y++ AT+ G V++ L ++ R Sbjct: 586 RQARGTPLVNLLYLNKGETITAVIPIRELE---EDSYLLMATRKGIVKKTSLGEYHTSRR 642 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ LD D+++ V N+++L T+ G+ +RF +R GR + GVRGI+L Sbjct: 643 DGLLAINLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPM-GRAARGVRGIALD 701 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ + V Sbjct: 702 DDDMVVGLVKVRE----------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + ++ VSE+GFGKRT+ ++R R GKGI +V+ G + AV V Sbjct: 715 ------DAELVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVTDR--TGPVAAVAVVKLE 766 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D+++L+S +G LIR+ V +I R T+GV + +RVV++ RI Sbjct: 767 DELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARI 813 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 61/258 (23%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV T G ++R + + R G AM D + + T + +L T G+ Sbjct: 514 VVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRV 573 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R I AGR + G V + L KG+ + ++ + + Sbjct: 574 FRLRGHEI-PEAGRQARGTPLVNLLYLNKGETITAVIPIRELE----------------- 615 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++L + KG K+TS ++ S R Sbjct: 616 ---------------------------------EDSYLLMATRKGIVKKTSLGEYHTSRR 642 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+ A ++ + LV V N++++LV+ +G IR +E+R RA +GV Sbjct: 643 --DGLLAINLDE---DDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRG 697 Query: 883 FSTAKDERVVSVERIRES 900 + D+ VV + ++RE Sbjct: 698 IALDDDDMVVGLVKVRED 715 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 6/161 (3%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 A Y E + + A R + + + + + ++L +E ++T++ Sbjct: 460 AYYQEVLASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTH 519 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G+ KR +R R G+GI+A + + + +F + ++ +++G + R+ Sbjct: 520 RGYIKRQPVDTYRSQKRGGRGIQAMGTREEDI---VRDIFVTTTHHYLLFFTNQGRVFRL 576 Query: 866 PVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903 +EI A R +G + + K E + +V IRE E Sbjct: 577 RGHEIPEAGRQARGTPLVNLLYLNKGETITAVIPIRELEED 617 >gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594] gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594] Length = 931 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 442/900 (49%), Positives = 598/900 (66%), Gaps = 34/900 (3%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G + Y K A+ Sbjct: 5 ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ RYTE RL Sbjct: 65 IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLA 124 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A+ LLDDL KDTVDF NYDGS +EP VL AR+PN+LVNG GGIAVGMATN+P HNLG Sbjct: 125 KVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLG 184 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DGC+A I NP I + LM+ I GPDFPT +ILG+ G + AY TGRGS+++R I Sbjct: 185 EVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEI 244 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ GDR+ IV T IPYQV K+ ++EKIA+ +EKRI I+D+RDES R+G RVV++LKR Sbjct: 245 EEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKR 304 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 AS +V+LNQ++RYT Q+ F NM+A+ G +PE TL I++AFV+FREEV+ RRTK+ Sbjct: 305 DASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFE 364 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 LNKAR+RAHVL+GL +AV+NLDEVV +IR S NP+ AR +L + W DI I LI+ Sbjct: 365 LNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEA 424 Query: 437 SSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T + GT LSE Q +AIL+LRL RLT LGRD+I +EL L EI+E L IL+ R Sbjct: 425 IEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRG 484 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L G+++ EL+ +KDE TPR + I +EDED I REDMVVTV+H GY+KR PL+ Sbjct: 485 KLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTPLAT 544 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGGKGRSG+ +DED V +LF+ STH VLFF++LG VY+ KVW+LP GSP +G Sbjct: 545 FRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEGSPTTKG 604 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L ER+T ++ PEDE SW L +VFAT+ G VRRN + F + GK A Sbjct: 605 RPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYA 664 Query: 676 MKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 M D ++ VE +++ +I L + G+ +RF + R R +GVRG++L Sbjct: 665 MGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDA 724 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SMA++ + D + R Y++ + ++ E + ++ ++ Sbjct: 725 KVVSMAVLDRLEQDMETREAYLRAAIWK----------------NNDAEHTLDSDKVAQM 768 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDND 851 + E+FILT++ G+GK +S+Y++R R G+G+ N G +VA FPV Sbjct: 769 EEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGS 828 Query: 852 QIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVERIR 898 Q++LV+D+ LIR+P+ + R + GV +F AK E +V I Sbjct: 829 QLMLVTDQAKLIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIID 888 Score = 49.0 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 53/303 (17%) Query: 532 CIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 E+ + + G V+R + + GGK G V D + + ++S Sbjct: 625 LPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYAMGFVEGTGDRLIGVELLSED 684 Query: 587 TSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPED 639 + S G + G K ++S+ +R+ M E Sbjct: 685 QEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDAKVVSMAVLDRLEQDMETREA 744 Query: 640 E----------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +++ T +G + + ++ I R G+ Sbjct: 745 YLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLAN 804 Query: 678 LDSRDEI-------LSVETCTQENDILLTTKLGQCVR------------FPISAIRVFAG 718 + + D ++ + ++L T + +R F G Sbjct: 805 IGTPDSNPERNGPVVASFPVKHGSQLMLVTDQAKLIRMPIEFRHMVEGGFEEHKGWSVYG 864 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVR +AKG+ ++ AI+ + +E + R + ++ Sbjct: 865 RTSSGVRVFDVAKGEHIVGAAIIDETEEPENEAEEAVVEGMVGRGAEETAPDPTMDRDSN 924 Query: 779 SSV 781 Sbjct: 925 EGE 927 >gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] Length = 837 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 377/887 (42%), Positives = 540/887 (60%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ ++I++EM+ S+L YA++VI+ RA+PD+RDG+KPVHRRIL+ M +G+ +K Y Sbjct: 5 NRPRVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++A+Y+ + RMAQ +S R +L++G GNFGSVDGD AA RYT Sbjct: 65 KKSARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + LL D+ KDT+D++ NYDG+ +EPVV AR+PN+LVNG GIAVGMATNIP Sbjct: 125 EARMSKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 H+LGE +D +A+ NPDI +D +M + GPDFPT ILGR+GI+ AY TG+GSI I Sbjct: 185 PHHLGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSITI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +IE+ D+E I+VTE+PYQVNKA ++EKIAELVR+K++ I DLRDESDR G R+ Sbjct: 245 RAKLNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R A+A+V+LN LY++TSLQ+ F +NM+AL +P + L ++ ++ ++ Sbjct: 305 VIELRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVIIK 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA RAH+L GL IA+ +LDEV+ +IR S + AR LM+R Sbjct: 365 RRTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AIL++RL RLTGL R+ I +E L I+E I Sbjct: 415 ----------------FKLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELKAI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ ++L II++EL +K++ RRT IV G EDED I E++V+T++H GY+K Sbjct: 459 LADEEKVLEIIREELTEIKEKYKEDRRTEIVAGGAGFFEDEDLIPEENIVITLTHQGYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P S YR Q+RGG+G G+ ++DFV L STH ++LFF++ G VYK K + +P Sbjct: 519 RLPASTYRTQKRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEF 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+G +IN+L + +GE + ++ + + Y+ F TKHG +R L F I Sbjct: 579 SRTAKGIPIINLLQVEKGEWVNAVISVNQFD---EEAYLFFTTKHGIAKRTSLEKFRNIR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L DE++SV + ++++ TK G +RF + IR GR + GV+GISL Sbjct: 636 KGGLIAVGLREEDELISVRLTDGQKEMMIATKNGYLIRFEETQIRSM-GRTAAGVKGISL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+SM I+ Sbjct: 695 RGDDVVVSMEIIEPGSK------------------------------------------- 711 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 IL V+ KGFGK+T ++R NR GKG+ + + + G +VAV VN Sbjct: 712 ----------ILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDE--KTGNVVAVKAVNG 759 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ ++L++ G LIR+ V +I R TKGV + E V +V R Sbjct: 760 DEDLMLITIAGVLIRIQVQDISQTGRNTKGVHLIRLQDGEEVATVTR 806 >gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523] Length = 862 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 382/903 (42%), Positives = 562/903 (62%), Gaps = 69/903 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R+QK Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDN ++ ++ L+ I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNSELTIEDLIHYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QIVVTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I SD + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS + L+ ++K+EL+ ++D R++ I+E LD+ ED I E+MVVT+S GY Sbjct: 490 IGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV AT+ G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATRLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + +++SM + Sbjct: 726 RIHPDQKIVSMLVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S+ ++ + + VD E Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISL-KVVKQDDVDNGE 850 Query: 908 STE 910 E Sbjct: 851 DIE 853 >gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] Length = 862 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 347/926 (37%), Positives = 553/926 (59%), Gaps = 97/926 (10%) Query: 2 TEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 +++ + ++EE+ E I ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL Sbjct: 11 SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70 Query: 58 FGMM-QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 + M ++ + +K K ARI G+V+GK+HPHG++++Y+A+ RMAQDWS+R L++GQGN Sbjct: 71 YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS+DGD PAA RYTE R+QK ++ D+ KDT+D+ N+D + EP VL + P +LV Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATN+ HNLGEV+D C A +DNP+I + L++ ++GPDFPTG +I G G Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIYGYEG 250 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 ++ A TGRG +V+R + IE T+ RE IV+TEIPY VNKA M++KIA+L+ EK+I I Sbjct: 251 VREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGI 310 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 + + DESDR G R+++ LK A A V+LN LY+ T LQ+ F+VN +AL +P L+ Sbjct: 311 SYINDESDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNGRPMMLNLLD 370 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +++ FV R +V+VRRT++ L KA R H+++GL IA N+DE++ IIR + NP+ A++ Sbjct: 371 LVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQA 430 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 +M+R LS+ Q AI+E+RL LTGL D + E Sbjct: 431 MMER--------------------------FSLSDAQASAIIEMRLRALTGLEHDKLVAE 464 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 N L +I D+L SR + I+K ELL VK + RR+ IV + ED + Sbjct: 465 RNELEAQIAYFNDVLGSRELQMKIVKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADD 524 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MV+T+SHLGY+KR PL+ YR Q RGG G G RDEDF+ +++ + H ++LFF+ G Sbjct: 525 EMVITISHLGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKG 584 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKH 654 Y KV+ +P G+ ++G+A+ N++ + +++ + +D NN Y++ TK Sbjct: 585 RCYWLKVYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKD 644 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G +++ KL + + ++G A+ + D+++ + + ++++ + G+ +RF + +R Sbjct: 645 GTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVR 704 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR GVRGISL +GD+V+ M + + Sbjct: 705 PI-GRVGAGVRGISLDEGDEVVGMICIEPNSS---------------------------- 735 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 Q +L +SE G+GKRT ++RI+NR GKG++ ++++ Sbjct: 736 -----------------------QDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITE 772 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G L+++ V D + +++++ G IR V++IR+A RAT+GV I + + + + SV Sbjct: 773 --KTGKLISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASV 830 Query: 895 ERIRESEIVD----------EAESTE 910 + +E + E+ES E Sbjct: 831 IAVPANEEEEPAVLDGAGAPESESEE 856 >gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4] Length = 805 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 369/877 (42%), Positives = 544/877 (62%), Gaps = 86/877 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI GEV+GK Sbjct: 1 MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+++ RMAQ+++ R +L++G GNFGSVDGD AA RYTE R+ K + L+ Sbjct: 61 YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDT+D++ NYDG +EP VL AR+PN+LVNG GIAVGMATNIP H LGE++DG +A Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 + N DI + LME I GPDFPT +I+GR+GI+ AY TG+GSI++R IE+ S +E Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R+VIE++R A+A+V+L Sbjct: 241 TIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQ+ F +NM+AL +P+ L L ++ ++ V+ RRT+Y L KA RA Sbjct: 301 NNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + A+ LM + Sbjct: 361 HILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQ------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q +AIL++RL RLTGL R+ I E +L I E IL+ ++L II++E Sbjct: 397 --FNLSEKQAQAILDMRLQRLTGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREE 454 Query: 505 LLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 LL +KD + RRT IV G+ ++EDED I RE++V+T++H GY+KR+P S YR+Q+RGG Sbjct: 455 LLEIKDRFNDVRRTEIVAGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ D+DFV L STH ++LFF++ G Y+ K + +P + A+G +IN+L Sbjct: 515 RGVQGMGTNDDDFVEHLLYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLG 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 + + E I T++ E + Y+ F T+ G +R +SDF I +G IA+ L DE Sbjct: 575 IEKDEWINTMIRIEEFD---EESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDE 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++SV+ + IL+ TK G +RF +R GR + GV+GI+L D+V+SM I+ Sbjct: 632 LISVKLTDGDKQILIGTKNGLLIRFDEKDVRSM-GRTATGVKGITLVNDDEVVSMEIIEE 690 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 D +L + Sbjct: 691 DD-----------------------------------------------------HVLVI 697 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 ++ GFGKRT + ++R+ +R GKG++ +++ N G LVAV V + ++L++ G LI Sbjct: 698 TKHGFGKRTPASEYRLQSRGGKGLKTCNITDKN--GPLVAVKSVTGEEDLMLITVHGVLI 755 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 R+ ++ I I R T+GV + S ++E V + ++ + Sbjct: 756 RMDIHAISITGRNTQGVKLISLREEEYVATAAKVAKE 792 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 96/241 (39%), Gaps = 28/241 (11%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DEI+++ +Q DI K G +F +S + + + + L ++ Sbjct: 368 IALDHIDEIIALIRGSQTTDI---AKEGLMTQFNLSE------KQAQAILDMRL---QRL 415 Query: 736 ISMAIVLHADADYDERI----------CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + + + + K + R + + ++ V G I Sbjct: 416 TGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFNDVRRTEIVAGGI 475 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++L +E ++T++ G+ KR + +R R G+G++ + + + L Sbjct: 476 ENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL---L 532 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEI 902 + +D I+ ++KG R EI +R KG+ I + KDE + ++ RI E + Sbjct: 533 YTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLGIEKDEWINTMIRIEEFDE 592 Query: 903 V 903 Sbjct: 593 E 593 >gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 367/887 (41%), Positives = 549/887 (61%), Gaps = 85/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTAEHYLFFATRQGIVKRANVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + I++++D G +IR + I R+T GV + ++ ++++ + Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALV 804 Score = 91.8 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 98/239 (41%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + RF +S R S + + L Sbjct: 382 IALDHIDEVIRIIRNSETD---ALAQAELMERFDLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S +V D + + + + + + + G + Sbjct: 433 ERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S +G+ KR + +F+ R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +D ++ ++KG + R+ EI R KG V + ++E + ++ + + + + Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTIINVTKDQTAE 608 >gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112] gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG] gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548] gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112] gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548] gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG] Length = 868 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 565/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS + L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] Length = 915 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 384/919 (41%), Positives = 555/919 (60%), Gaps = 34/919 (3%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 S+D + K +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ Sbjct: 2 THSNDHQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELK 61 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 WN Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +SLR +L++GQGNFGSVDGD Sbjct: 62 NNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDA 121 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE R+ K AH +L D+ ++TV+F NYDGS QEP+VL R+P +LVNG GIAV Sbjct: 122 AAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAV 181 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNL + + C+ ++ P+ D++ L++II+ PDFPTGA I G TG++ Y TG Sbjct: 182 GMATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIYGLTGVRAGYQTG 241 Query: 245 RGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 RG +VIR +H+E SG+RE I+V EIPYQVNKA ++EKI ELVREK I IA+LRDE Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SD+ G R+VIELKR +A+VILNQLY+ T LQ F +NMVAL +P L IL F+ Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQPRLLNLKQILSEFL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R EVV RRT + L KAR H+ G A+A++N+DE++ +I+ S + E AR L+ R+W Sbjct: 362 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRAW 421 Query: 423 NASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +S + +++ D +LS+ Q RAIL + L LTGL +D+ Sbjct: 422 QSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQDE 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDED 531 I E L I + LDIL+ R+ II+ EL+ +K + RR+ I G D+ DED Sbjct: 482 IVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I DMVVT++H GY+K P S Y+AQRRGG+G+ +DEDF+ LFI +TH ++ Sbjct: 542 LIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++LG + KV+RLP G +RG+ + N++ L++ E+++ I+P E N YV FA Sbjct: 602 FTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFP---ENEYVFFA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ +LS F ++ G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 659 TALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFNE- 717 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +AG+ + D + + DAD + + SG Sbjct: 718 ---YWAGKADAA------DEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSGGLRG 768 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + +N V ++++ C +LT + G+GKRT D+ + G+G A + Sbjct: 769 MRLPENGRIVSLLVAQKNC------GLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAIN 822 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N G LVA V+ ND ++L++ G LIR V ++R R GV + + + + Sbjct: 823 TGERN--GDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKLINLDEGTTL 880 Query: 892 VSVERIRESEIVDEAESTE 910 VS+E + ES+ D+A+ TE Sbjct: 881 VSIEPVVESDDADDADETE 899 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 66/475 (13%), Positives = 153/475 (32%), Gaps = 72/475 (15%) Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + R D+ ++ +A + +++ I+ A+ Sbjct: 452 QADGYWLSDEQARAILRMSLRNLTGLDQDEIVKEYKELMAIIVDLLDIL--------AKP 503 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 E +++ ++ D+ I + G +++ ++ + G Sbjct: 504 ERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADEDLIPPRDMVVTLTHGGYIKTQPT 563 Query: 476 ELNSLGIE--IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-------------- 519 + + + R Sbjct: 564 SDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMCFTNLGRCHWIKVYRLPEGGRNS 623 Query: 520 ----IVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 I + E+E + V + LG VK+V LS ++ KG Sbjct: 624 RGRPINNVIQLDENEKVSAILPVREFPENEYVFFATALGMVKKVQLSAFK--NVSSKGIK 681 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV-----YKEKVWRLPI-------------- 608 + +++ D + S ++ FS+LG Y Sbjct: 682 AIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFNEYWAGKADAADEDDSELEAEMQPEN 741 Query: 609 --GSPQARGKALINILSLNQGERITTIMPFPEDESSWN--------NLYVVFATKHGNVR 658 + A K+ + +G M PE+ + L V+ AT +G + Sbjct: 742 DADNETAAPKSGNGVRPSGRGSGGLRGMRLPENGRIVSLLVAQKNCGLQVLTATANGYGK 801 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R + D+ + + G+ + +++ + ++ + +D++L T G +R + +R Sbjct: 802 RTPIDDYPRKGKGGQGNIAINTGERNGDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRE 861 Query: 716 FAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDT 769 GR + GV+ I+L +G ++S+ +V DAD + + + A + SG+ Sbjct: 862 -TGRTAAGVKLINLDEGTTLVSIEPVVESDDADDADETEALDAVDAVEQNGSGEA 915 >gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327] gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327] Length = 826 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 365/897 (40%), Positives = 537/897 (59%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM+++YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ NK + Sbjct: 2 QREKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ EVV G +A+ID+P+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR Sbjct: 182 PHNMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR+G R+ Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+ Sbjct: 302 VIELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN A RAH+L GL I + NLDEV+ IR SP+ TA+ L+ R Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDR---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ +AILE+RL RLTG+ R I +E I+E I Sbjct: 412 ----------------FGLTEVQAKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S ++ + IIK+ELL V + RRT + D ED I +ED+V+T++H G++KR Sbjct: 456 LASPAKQMEIIKEELLKVSEVYGDERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGG+G +G ++EDF+ +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L GE+I T + + + +++ AT +G V++ L + R Sbjct: 576 RSARGRSLANIMELPPGEKIRTYINIRNFD---DPHFIIMATANGIVKKTDLKQYSNPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE++ ++ ++L G VRFP S +R GR ++GV+GI+L Sbjct: 633 TGINAITIEEGDELIEARLTDGDHQVILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + ++ ISM D Sbjct: 692 EAERCISMVTTKRNDTS------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ G+GKR+ D+R++ R +G+ + +IG LV + VND Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D +I+++ G +IR V++IR+ R T GV + +R+ + R+ +S+ +E Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDEPTSE 814 >gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398] Length = 889 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DADDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 106/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T +G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNVGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D D+ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDADDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2] Length = 828 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 367/901 (40%), Positives = 543/901 (60%), Gaps = 85/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S E + I + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+ Sbjct: 2 STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R LI+G GNFGSVDGD AA Sbjct: 62 NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K ++L D+ KDTVDF+PNYD QEP V+ A++PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMAKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV++G +A IDNP+I++ LM I+GPDFPTGA I+G GI +AY TG+GS Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGS 241 Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 R +H+E+ + +I+VTEIPY VNKA ++EKIAELVREKRI I DLRDESDR Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+EL+R + V+LNQLY++T ++ F VN++AL +P+ L I+ F+ ++ Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA AH+L GL IA+ +DEV+ IIR S + ++A+ LM R Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+ Q++AI+++RL RLTGL R+ I + + I Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +L+S +L IIKQEL VK++ RRT I M ED I E++V+T+SH G Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+PL+ Y++QRRGGKG G+ R+EDFV +F STH +LFF++ G VY+ K + Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +G AL+N+LS+N E I + ++ AT+ G V++ L ++ Sbjct: 576 PEAGRTGKGTALVNLLSINPSEE--KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYD 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G IA+ L DE++ V + I++ TK G C+RF S +R GR + GV+G Sbjct: 634 SPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKG 692 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL K D V+SM ++ +A+ Sbjct: 693 ISLEKEDLVVSMDVIYEEEAE--------------------------------------- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL+++E GF KRTS ++R+ R GKGI AT ++ + G LV + Sbjct: 714 -------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLKV 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + + ++++++ G +IR V+ I R+ +GV+ + +VV++ + E +E+ Sbjct: 759 MRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIGES-KVVAIAVVDNKEDAEES 817 Query: 907 E 907 + Sbjct: 818 D 818 >gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] Length = 883 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 365/898 (40%), Positives = 549/898 (61%), Gaps = 84/898 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + D + I ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MAEDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ NK Y K ARI GEV+GKYHPHG++++Y + RMAQ+WSLR L++GQGN+GS+ Sbjct: 61 LNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL K A +L D+ KDT+D++ N+D + QEP VL A++PN+LVNG Sbjct: 121 DGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGAS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HNL EV++ +A ID+ +I++ LM+ ++GPDFPTG +I G G + A Sbjct: 181 GIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIYGFEGAREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRG I++R + IE + DRE+I+VTEIPYQ+NK+ M+E+ AELV EK++ I+ +R Sbjct: 241 SETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G RVV E+KR A+A ++LN L++YTSLQ+ FSVN +AL +P L ++ Sbjct: 301 DESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGRPMLLNLKDLIHH 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EV+VRRTK+ L +A RAH+L GL IA+ +LDEV+++IR S P+ AR LM R Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I+ E N L Sbjct: 421 --------------------------FNLSDIQARAILDMTLRRLTGLERDKIKAEYNEL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I IL+ + IIK EL+ +K++ RRT+IV +M+ ED I E++V+ Sbjct: 455 MKLIDYLKSILADEGLRMEIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR PL+ YR Q RGGKG G RD DF+ L I S H +LFF+ G + Sbjct: 515 TISHEGYIKRTPLTEYRTQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFW 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658 +V+ +P G+ ++G+A+ NI+++ + E I + +D N +++ T+ G ++ Sbjct: 575 LRVFEIPEGTRTSKGRAIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIK 634 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ D +L T ++I++ K G+ +RF S +R G Sbjct: 635 KTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPM-G 693 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRGI+LA + D+V+ M + Sbjct: 694 RTATGVRGITLAGENDEVVGMIAIDD---------------------------------- 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 E +L VSEKG+GKRT D+R++NR GKG++ +V++ + Sbjct: 720 ------------------AETTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE--K 759 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G LVA+ V D +++++ G +IR+ +N++R RAT+GV + S +++ + SV Sbjct: 760 TGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASVA 817 >gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521] gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521] Length = 835 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 86/886 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K Y Sbjct: 5 NEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYT Sbjct: 65 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++DG + +IDNP++ + LM I+GPDFPTGA I+G+ GI+ AY TGRG IV+R Sbjct: 185 PHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +IVVTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+V Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+ +V+LN LY++T LQ F V M+AL +P + IL ++ +++EV+ R Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM++ Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q AILE+RL RLTGL R+ I E L +I+ IL Sbjct: 413 ---------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +LLG+IK EL +K + RRT+I + + +++ ED I ED+V+T+++ GY+KR+ Sbjct: 458 ASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRI 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y AQRRGGKG + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 518 SADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G +IN++++ E+I T++ + ++ ATK+G V++ +S+F + ++ Sbjct: 578 QAKGTNVINLIAIEPDEKIQTVLTVSD---GKKEGFLFMATKNGIVKKTHISEFKNLRKN 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L V+ + +I++ T+ G VRF +R GR + GV+ I+L Sbjct: 635 GLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKD 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D + M I + + Sbjct: 694 DDVAVCMDIAVDGE---------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE GFGKRT ++++ NR G G+ +S+ + G L +D Sbjct: 708 -------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDD 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++L++ G IR+ V +I + +R+ GV + T +DE+VV++ +I Sbjct: 759 ELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804 >gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 868 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAALV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] Length = 889 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 553/903 (61%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E + DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819 Query: 908 STE 910 E Sbjct: 820 EDE 822 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D ++ +V + G VKR LS + R GK + R++D + + + S +L Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 +S + + L A G I + ++ + DE V+ Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T++G +R ++D+ NR GK A + ++ + T T E D+++ T G +R Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ I GR + GVR I L V + V D ++ + ++ Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + +++ +E E ++ I Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866 >gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929] gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929] Length = 850 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 353/904 (39%), Positives = 546/904 (60%), Gaps = 84/904 (9%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + DE +T+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ Sbjct: 3 NKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHEL 62 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 GV +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQD+S R +L++G GNFGSVDGD Sbjct: 63 GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGD 122 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 AA RYTE RL K A +L D+ KDT+DF+PNYDG+ +EP VL +R+PN+LVNG GIA Sbjct: 123 GAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIA 182 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNL EV+ ++ NPD LME + GPDFPTG V++G++GI+ AY T Sbjct: 183 VGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYET 242 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 G+G+I++R IE +G +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DES Sbjct: 243 GKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 302 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+ P+ +L IL ++ Sbjct: 303 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLE 362 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + EV+ RRTKY LNKA+ RAH+L GL IA+ ++DE+++IIR S + A+ +L++ Sbjct: 363 HQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE---- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L + Q +AIL++RL RLTGL R+ I E N L + Sbjct: 419 ----------------------GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 456 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542 I+E IL+SR R+ II QELL ++++ PRRT ++ G + +++ ++ E+ V+ + Sbjct: 457 IEEYKAILASRERVNEIIYQELLEIQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISL 516 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KR+P S ++AQ RGG+G G+ + ++DFV L STH +LFF+ G VY+ K Sbjct: 517 THNGYIKRLPTSEFKAQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMK 576 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P A+G +IN+L++ E+I ++ + + + F T G V+R + Sbjct: 577 GYEIPEYGRSAKGIPVINLLNIGNNEKIQAVINVSDKNNDIE-KDLFFVTLMGTVKRTPV 635 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF I +G A+ L D++ +V +++ +I++ T G V F + +R GR++ Sbjct: 636 SDFANIRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSM-GRSAT 694 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L + D V+ I+ Sbjct: 695 GVRGVRLRENDYVVGSDILK---------------------------------------- 714 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + +SE G+GKRT + ++ I R GKGI+ ++++ N G L Sbjct: 715 -------------PDSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKN--GPLA 759 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + VN + I+L++D+G +IR V ++ RAT GV + +V ++ ++ + + Sbjct: 760 GLTTVNGEEDIMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQDD 819 Query: 903 VDEA 906 ++ Sbjct: 820 SEDD 823 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 17/246 (6%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + V+ +G VKR P+S + R G + ++D+D V+++ I S +++ + Sbjct: 618 EKDLFFVTLMGTVKRTPVSDFANIRSNG--LKAINLKDDDQVSNVLIASEDQNIIIGTHR 675 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G+ + A G + R+ + + V +++G Sbjct: 676 GYAVSFNAADVRSMGRSATGVRGV---------RLRENDYVVGSDILKPDSEVFIISENG 726 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPIS 711 +R +++ I G +K + E + + T E DI+L T G +RF + Sbjct: 727 YGKRTPAAEYP-IKGRGGKGIKTANITEKNGPLAGLTTVNGEEDIMLITDQGVMIRFSVE 785 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + GR ++GV I + G +V +MA V D D+ + ++ Sbjct: 786 DV-SQTGRATLGVHLIRMTDGAKVATMAKVEKQDDSEDDTKDQSSDSEQASDDSGTNADQ 844 Query: 772 ITSLKN 777 + N Sbjct: 845 NSDSDN 850 >gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122] gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122] Length = 886 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 86/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++E DE Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED--ADEVN 818 Query: 908 STE 910 E Sbjct: 819 EDE 821 >gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] Length = 826 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 352/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+V Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+ +LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf] gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf] Length = 821 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 352/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+V Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+ +LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp. novicida GA99-3549] gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549] Length = 868 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 565/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS + L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQGDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] Length = 848 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 376/911 (41%), Positives = 557/911 (61%), Gaps = 94/911 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNIFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN D ++ L+EI++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K+I I DL D S Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFTLIGILK 359 R+G R+ I+L++ A+A+V+LNQLY++T LQ F V M+ L +P+ TL +LK Sbjct: 302 SREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLK 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++A +E+VV RRTKY LNKA++RAH+L GL A+ N+DEV+RIIR S + + A++ELM Sbjct: 362 HYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMD 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R L++VQ +AI+++RL LTGL R+ + E Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ R+ LL +I++E+L++ ++ RRT I D+ ED I RE+ V Sbjct: 456 LMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAFDISMEDMIPRENTV 515 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++ LGY+KR+ + +R+Q RGG+G G+ D+D++ +L + +TH V+FF++ G VY Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVY 575 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P ARG A+IN+L L GERIT ++P + E Y++ AT+ G V++ Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFE---EGQYLMMATRKGLVKK 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + D+ + + G A+ L DE++ V+ + DI+L TK GQC+RF S +R GR Sbjct: 633 TPIQDYANVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRS-TGR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L GD+V++M Sbjct: 692 VSMGVRGINLLDGDEVVAM----------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L + ++L VSE G GKRTS +F NR GKG++ +++ + G Sbjct: 711 ------------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITE--KTG 756 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ VN+ ++I++++ +G +IR+ ++I I R T GV + + + V S ++RE Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVRE 816 Query: 900 SEIVDEAESTE 910 E +E TE Sbjct: 817 KEEDKNSEKTE 827 >gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 400/899 (44%), Positives = 561/899 (62%), Gaps = 74/899 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+ + + I +VSI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R L++GQGNFGSV Sbjct: 60 RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + L+ DL K+TVDF P YD S EP+V AR PN+LVNG Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG I GR GI+ A Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++IR HIEK RE IV+TEIPYQ NK+ +LEKIA L++EKRI IA+ R Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELK+ A+V++NQLY+ T LQ F + M+++ +PE L IL+ Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR L+ R Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS +Q +AILE+RL RLTGL R+ I E ++L Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +L S ++ II++E ++++ RRT I++ ++ ED I RE+MVV Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KR P+ YR+QRRGGKG G DEDFV+ + + STH ++LFFS+ G V+ Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRR 659 KV+ +P ARGKA++N+L L E++ I+P E + Y++ ATK G V++ Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F + + GKIA+ + DEIL T +N++LL ++ G VRF IR GR Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAM-GR 692 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+LA GD+ Sbjct: 693 GASGVRGITLAAGDE-------------------------------------------QK 709 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + E IL VSE GFGKR+ ++R+ R GKG+ A S+ N G Sbjct: 710 GIPADELIGLQVLSGDPEASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERN--G 767 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V + V D+DQ+++++++G +IR+P+ IR+ R+T+GV +F+ +E+VV+++R+ Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 20/214 (9%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754 + G RF +SAI+ + + + L + +++I ++ + + Sbjct: 413 REGLINRFGLSAIQ------AQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGD 466 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + R E + + E +++ +E+ ++TV+ G+ KR Sbjct: 467 ESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVVTVTHAGYIKRNPV 526 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873 +R R GKGI+ + + V+ V D ++ S+KG + V EI A Sbjct: 527 DTYRSQRRGGKGIKGAGTTDEDF----VSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQA 582 Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 R +G V + +E+V ++ + E+ + Sbjct: 583 GRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616 >gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree] gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree] Length = 831 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 357/887 (40%), Positives = 541/887 (60%), Gaps = 86/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL R+AQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKADIEEEK-GRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V+LNQLY++T LQ F + M+AL +P+ L IL ++ F++EV+ R Sbjct: 302 IELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L I IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL +K++ RRT IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIVKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+ I+L + Sbjct: 633 GLIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPM-GRTASGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMDVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803 >gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] Length = 833 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 389/900 (43%), Positives = 555/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ SV+I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G E+NK Y Sbjct: 3 SQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGS+DGD AA RYT Sbjct: 63 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K +H LL D+ K+TVDF PNYD S EP+VL ++PN+LVNG GIAVGMAT IP Sbjct: 123 EVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV++G V++ID+P + + L++II GPDFPT ILG ++ AY TGRG I +R Sbjct: 183 PHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMR 242 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE IV+ EIPYQVNKA ++EKIA L++EK+I I+DLRDESDR G R+ Sbjct: 243 AKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR A A V+LNQLY+ T++QS F + M+A+ G +P+ TL +L F+ R+E+V Sbjct: 303 VIDLKREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR + L KA RAH+L GL IA+ NLDE+++II+ S N + A+ L++R Sbjct: 363 RRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIER---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 S++Q +AIL++RL RLTGL RD I NE N + +I +I Sbjct: 413 ----------------FTFSDIQAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S +L II+ EL+ VK+ D PRRT I+ D+ ED IV EDMVVTVSH GY+KR Sbjct: 457 LGSEVEILKIIRAELIEVKENYDDPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +S+YR+QRRGGKG++G+ ++EDFV LFI STH+ +L F+ G VY KV +P G Sbjct: 517 NAVSLYRSQRRGGKGKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGG 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARGKA++N+L L ER+ TI+P E + Y++ ATK+G V++ +L + + Sbjct: 577 RAARGKAIVNLLQLAPEERVMTILPVKEFV---EDKYIIAATKNGVVKKTELMAYANPRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G I+M +D D +++ D+LL + G+ +RF + +R GR + GVRG+ L Sbjct: 634 GGIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPM-GRTARGVRGMQLE 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D +I M +V + Sbjct: 693 GDDTIIGMEVVNDNTSAS------------------------------------------ 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +++V+E G+GKRT+ ++R+ +RSGKGI S N G +V + V D Sbjct: 711 ---------LVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRN--GYVVDIKLVTDE 759 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++ ++D+G ++R V + I R T+GV + DER+V+V ++ E E E E Sbjct: 760 EDLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKEEELPQELIE 819 >gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4] Length = 843 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 373/903 (41%), Positives = 553/903 (61%), Gaps = 86/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV + + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D + +EP VL R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A IDN +I++D LM+ I+ PDFPTG I G G+K A+ TGRG IV+R Sbjct: 183 PHNLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G ++IE+ RE I+VTEIPYQVNKA M++K A+L+ +K++ I+ +RDESDR G R+V Sbjct: 243 GNANIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+LY+YT+LQS FSVN +AL KP+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGKPQLLNLKELIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA +RAH+L GL IA N+DEV+ +IR S N + AR +L++R Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E L I++ DIL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK+EL V+D+ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 DKKDRRMSIIKEELQLVRDKYGDERRSKIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE NN YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + D +L + T E+ ++L K G+ +RF + R GR + GVRGI L Sbjct: 636 TNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPM-GRGASGVRGIRL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M V D++ Sbjct: 695 QDEKTDEVIGMIAVNDMDSN---------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL VSE G+GKR+S D+RI+NR GKG++ +++ + G LV++ V Sbjct: 715 ------------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVSIKNV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ E E Sbjct: 761 TDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVMHEEEEVVDE 820 Query: 908 STE 910 + E Sbjct: 821 TIE 823 >gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca] gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39] Length = 884 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 378/905 (41%), Positives = 540/905 (59%), Gaps = 45/905 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 4 SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL +L D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+VDG VAVI NP+I LM I GPDFPTGA ILGR+GI+ AY TGRGSI + Sbjct: 184 PPHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR+ Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+EL+R A V+LN LY+ T LQ+ F NM+AL KPE TL L F+ FR Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 + RRT+Y KA +R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 364 HTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL+++L RLT L I E L +I + Sbjct: 418 --------------------FGLSEPQADAILQMQLRRLTALEAQKIDQEHQELLEKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L I++QE + +K+ TPRRT I ++ED D I E ++ ++ G Sbjct: 458 LNDILNRRERILEIVEQEAIQIKERHGTPRRTEIELEESELEDTDLIANEKAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G+SG M+++D V H S+LFF+ G Y K +++ Sbjct: 518 YIKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 PIGS ARG ++ +L + + E+IT+++ E N+ Y+V TK G +++ LS F Sbjct: 578 PIGSRIARGVPIVQMLPIPRDEKITSLVAVGEFT---NDEYLVMLTKGGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724 I +G IA+ L+ DE+ V + ++ I++ ++LG + F +R GR + GV Sbjct: 635 NIRSNGLIAISLNEGDELRWVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L D++I M I+ + EE T+ D + Sbjct: 694 KSMKLKPNDELIGMDILPSF--------IVATIPQLGGEEPEIEEEENTTAVEDVEDMDS 745 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E E++ IL ++ +G+GKR FR+ NR+GKGI AT +VA+ Sbjct: 746 SEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVAL 805 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V++ D+++L++ +G +IR ++ I SR GV + K++ + +V + S D Sbjct: 806 QVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGD 865 Query: 905 EAEST 909 + E Sbjct: 866 DTEVD 870 >gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11] gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11] Length = 813 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 363/895 (40%), Positives = 545/895 (60%), Gaps = 85/895 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++ I+L+++KG +IR V+ + RAT GV + +VV++ + E+ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVE 813 >gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 850 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 363/898 (40%), Positives = 551/898 (61%), Gaps = 84/898 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K Sbjct: 6 NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP H Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+ Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 ++R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS+ Q +AIL++RL RLTGL RD + NE + I + DIL+ Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ II +ELL ++++ RRT ++ +L +EDED I E++VVT++H GY+KR+P Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 S ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++ Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE+++V +I++ T G V F IR GR++ GVRGI L Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI AI+ Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E + +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 I++++DKG +IR ++++ RAT GV + + D V ++ ++ + + +E T Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821 Score = 62.9 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +E + ++ G VKR +S + R+ G + +RD D + ++ +++ + Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ + A G I R+ V +++ Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710 G ++ S++ I G +K + E + + T + DI++ T G +RF I Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKI 779 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GR ++GVR I+L V +M V D + + + + Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838 Query: 771 EITSLKNDSSVE 782 E Sbjct: 839 ARLLDAAQKDGE 850 >gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland] gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland] Length = 831 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 359/890 (40%), Positives = 547/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +IDN D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +IVVTEIPYQVNK+ ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++NI+ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLGDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859] gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859] Length = 955 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 356/911 (39%), Positives = 537/911 (58%), Gaps = 67/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WN + Sbjct: 65 QQVNKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQ 124 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K AR+ G+V+GKYHPHG+AA Y+ + RMAQD+S+R L++GQGNFGSVDGD AA RY Sbjct: 125 HKKSARVVGDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRY 184 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K + +L L +D VDF PNYDG+ +EP VL +P +L+NG GIAVGMATNI Sbjct: 185 TEVRLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNI 244 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E V+ C+ V+ NP+ +D +++++ PDFPTG ++ G + + AY TGRG +I Sbjct: 245 PPHNLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAII 304 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +HIE+ E I++ EIPYQVNK +LEKIA+LV EK+I ++ +RDESD+ G R Sbjct: 305 RAKTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMR 364 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIELKRGA+A+V+LN LY+ T LQ F +N+VAL +P++ + IL F++FR EVV Sbjct: 365 GVIELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVV 424 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R T + +KAR R +++ G AIA+ANLD+ + IIR S N + A L++R W A + + Sbjct: 425 TRVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAE 484 Query: 430 LIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +I +D + + T LS +Q + IL++RL LTGL ++ I E Sbjct: 485 MIKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYK 544 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I + DIL+ R+ II L +V E R+T+IV +++ +D I +M Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREM 604 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT++ GY+K YRAQ+RGG+G+ M++ D + LF+ +TH +L F++ G + Sbjct: 605 VVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRL 664 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + VW +P GS ++G+ ++N+L L E++T ++P DE +LY+ AT G V+ Sbjct: 665 HWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVK 723 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + + DF R+G A+ L D ++ ++D++L + G+ VRF +R G Sbjct: 724 KTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-G 782 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ L +G +VISM + + Sbjct: 783 RAATGVRGMRLDEGQKVISMLVCGDDEDVT------------------------------ 812 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LT +E G+GKR+ ++ R KGI + ++ N Sbjct: 813 ---------------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN-- 849 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +V+ V +ND+IIL++ G L+R VNEIR+ R T+GV + S + ++V +ER+ Sbjct: 850 GKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVT 909 Query: 899 ESEIVDEAEST 909 E++ D A Sbjct: 910 ENDDGDNASDN 920 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 69/445 (15%), Positives = 163/445 (36%), Gaps = 42/445 (9%) Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVA------NLDEVVRIIRFSPNPETARRELMQRSW 422 + ++ L + + A + + + V II S A +++ Sbjct: 526 MRLQSLTGLEQEKIHAEYKELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQ 585 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEV-QTRAILELRLARLTGLGRDDIRNELNSLG 481 I + + + + L++ ++ + G+ ++ Sbjct: 586 ----IVANAENVKTKDLIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKE-- 639 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I L + ++ LL + L + D P + +G + + E + Sbjct: 640 GDIINQLFVATTHDVLLCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAV 699 Query: 542 V----------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 + + G VK+ P+ ++ QRR G + + + + D + + Sbjct: 700 LPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRRAG--INAINLLEGDVLVGAAVTDG 757 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 V+ FS G V + + A G + + L++G+++ +++ +D + Sbjct: 758 KHDVMLFSDNGKVVRFSEDEVRAMGRAATG---VRGMRLDEGQKVISMLVCGDD----ED 810 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKL 702 + V+ AT+ G +R+ L+++ + R K + + +++S + ++I+L T Sbjct: 811 VTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTST 870 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G+ VR ++ IRV GRN+ GV IS+ +G +++ + V D + + Sbjct: 871 GKLVRTRVNEIRVL-GRNTQGVTLISMEEGTKLVGLERVTENDDGDNASDNAAVEVEVVS 929 Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787 + + E + E N Sbjct: 930 ETEAEEAELEAKDEAILKEEENDEN 954 >gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713] Length = 850 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 363/898 (40%), Positives = 552/898 (61%), Gaps = 84/898 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K Sbjct: 6 NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP H Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+ Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 ++R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS+ Q +AIL++RL RLTGL RD + NE + + I + DIL+ Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAK 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ II +ELL ++++ RRT ++ +L +EDED I E++VVT++H GY+KR+P Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 S ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++ Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE+++V +I++ T G V F IR GR++ GVRGI L Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI AI+ Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E + +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 I++++DKG +IR ++++ RAT GV + + D V ++ ++ + + +E T Sbjct: 764 DIMVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +E + ++ G VKR +S + R+ G + +RD D + ++ +++ + Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ + A G I R+ V +++ Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710 G ++ S++ I G +K + E + + T + DI++ T G +RF I Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFNI 779 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GR ++GVR I+L V +M V D + + + + Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838 Query: 771 EITSLKNDSSVE 782 E Sbjct: 839 ARLLDAAQKDGE 850 >gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] Length = 831 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 361/912 (39%), Positives = 519/912 (56%), Gaps = 89/912 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + V + DEMQ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MDDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ NK Y K ARI G+V+GKYHPHG++++YDA+ R+AQD+S R L+++G GNFGSV Sbjct: 61 NEAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE R+ K A +L D+ KDTVDF PNYD S +EP VL A+ P +L+NG Sbjct: 121 DGDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSA 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVD CV +ID+PD ++ LM ++GPDFPTGA ILG +GI+ A Sbjct: 181 GIAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +H+E ++ +IVVTEIPYQVNKA ++E IA LV++K + I DLR Sbjct: 241 YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIEL+ +++LN+LY++T LQ F + M+AL P L IL+ Sbjct: 301 DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEY 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +++V+ R+ +Y L KA++RAH+L GL IA+ +LDEV+ IR S N E A+ LM++ Sbjct: 361 YLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R I +E + Sbjct: 421 --------------------------FGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEV 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I D+LS +++GI +++LL VK RRT IV D+E ED I ED+V+ Sbjct: 455 MATIAYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--------DEDFVTDLFIVSTHTSVLFF 592 T+SH Y+KR L+ +R Q RGG+G + DF L + STH ++LFF Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY++K + +P S A+G + N+L L + E++ ++ S ++ AT Sbjct: 575 TNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMAT 634 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R +S+F + G IA+ L +E++ V+ + NDILL T+ G + F Sbjct: 635 NLGYVKRTSVSEFKSARKGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDD 694 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR S GVRGISL D V+SM Sbjct: 695 VRPM-GRTSHGVRGISLRPHDSVVSMD--------------------------------- 720 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 +LTV++KG GKRT ++R+ R GKGI V Sbjct: 721 -------------------SCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKV 761 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + G +V +N+ I+L+S G +IR+ +I R +GV + ++V Sbjct: 762 TDR--TGLIVGSKFINETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVA 819 Query: 893 SVERIRESEIVD 904 ++ + + Sbjct: 820 ALAIVNTVSEDE 831 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 101/248 (40%), Gaps = 31/248 (12%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE+++ + ++ K +F +S R + + + L Sbjct: 392 IALDHLDEVIATIRASANGEV---AKAALMEKFGLSD------RQAQAILDMRLQRLTGL 442 Query: 731 -----KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + + MA + A ++ + + R D ++ +S+ + Sbjct: 443 ERQKIEDEYKEVMATI----AYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVPDT 498 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843 + ++L +E ++T+S + + KR + +FR NR G+GI+A + E + Sbjct: 499 GDLETEDLIAEEDVVITISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKGDF 558 Query: 844 ---VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897 + + +D I+ +++G + R EI ASR KG I + ++E+V +V + Sbjct: 559 SEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVIAV 618 Query: 898 RESEIVDE 905 + DE Sbjct: 619 KSGISEDE 626 >gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] Length = 846 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 353/890 (39%), Positives = 547/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+V Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN++ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIINLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|21228522|ref|NP_634444.1| DNA gyrase, subunit A [Methanosarcina mazei Go1] gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1] Length = 900 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 381/891 (42%), Positives = 551/891 (61%), Gaps = 86/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+T + I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+ +K Y K Sbjct: 17 GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+YD + RM QD+SLR LI+GQGNFGS+DGD AA RYTE R Sbjct: 77 ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A +L D+ K+TV F PNYDGS +EP VL AR PN+L+NG GIAVGMATN+P HN Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV+DG + +I+NP+ + LM +I+GPDFPTGA ILG GI++AY TGRG I +R V+ Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I++ DR+QI+VTE+PYQVNKA ++E IA+LVREK I I+DLRDESDR+G RVV+EL Sbjct: 257 EIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVEL 316 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 RG + +V+LNQLY++T + + F V +AL KP+ L +L+ ++ +R E++ +RT Sbjct: 317 SRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTL 376 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + A++ L+ Sbjct: 377 YDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLI---------------- 420 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L EVQ +AILE+RL RLTGL I +EL +L +I+E IL+S Sbjct: 421 ----------DNFALDEVQAKAILEMRLQRLTGLETRKILDELEALVKQIEELRKILASD 470 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 II+ EL +KD+ RRTRIV ++ DED I ED+VVT+++ GY+KR+PL Sbjct: 471 ELKYEIIRTELSELKDKYGDIRRTRIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLD 530 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y QRRGG+G G+ M++EDFV +LFI STH +LFF++ G +Y +KV+ +P GS Q+R Sbjct: 531 TYTMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSR 590 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N+L L +GE + ++ E + Y+ AT+ G V++ LS+F R+G I Sbjct: 591 GKAIVNLLELQEGEMVNAMISVEEFA---EDKYLFMATRAGTVKKTPLSEFRNPRRAGII 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733 A+ LD DE++ V + +I++ +K G+ +RF +R GR + GVRG++L D Sbjct: 648 AVSLDEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPM-GRTARGVRGMTLEGPDD 706 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ +V Sbjct: 707 EVVSLDLVDETTT----------------------------------------------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +LTV++ GFGKRT + + R GKG+ + N G + V V ++D++ Sbjct: 720 ------LLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRN--GFVSNVKSVAEDDEL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + S +G +IR+P +I I R T+GV + + ++V + RI+ + + Sbjct: 772 MFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIKNGKEDE 822 Score = 82.5 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 62/370 (16%), Positives = 131/370 (35%), Gaps = 29/370 (7%) Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL--SEVQTRAILE 459 RI+ + N + I I +YT+ G + E++ +E Sbjct: 495 RIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFVE 554 Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519 T N ++ E I + G LL +++ Sbjct: 555 NLFISSTHNYILFFTNRGRLYWQKVYE---IPEGSRQSRGKAIVNLLELQEG-------- 603 Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579 + E+ + + + + G VK+ PLS +R RR G V + + D + Sbjct: 604 -EMVNAMISVEEFAEDKYLFMA-TRAGTVKKTPLSEFRNPRRAG--IIAVSLDEGDELVK 659 Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639 + + ++ S G + + ARG + ++L + + + Sbjct: 660 VLLTDGKQEIMMVSKKGKAIRFSEEDVRPMGRTARG---VRGMTLEGPDDEVVSLDLVD- 715 Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDI 696 ++ T +G +R + S + R GK + + + V +++++ Sbjct: 716 ----ETTTLLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRNGFVSNVKSVAEDDEL 771 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 + T+ G +R P I GRN+ GVR +++ GD+V MA + + D ++ + Sbjct: 772 MFTSAEGIIIRIPAKDI-SIQGRNTQGVRVMNIKSGDKVGGMARIKNGKEDEKLKLTALA 830 Query: 757 HMSAQRRLIS 766 +A+ ++ Sbjct: 831 KKAAKEKVPG 840 >gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 853 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 349/906 (38%), Positives = 543/906 (59%), Gaps = 84/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I+ V+++ M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 1 MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD Sbjct: 61 TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ ++DNPD + LME++ GPDFPTG +++G++GI+ AY TGR Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+I++R I+ +++I+VTE+PY VNKA ++E+IA L R+K I I D+ DESDR Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+++R ASA VILN LY+ T +Q+ F NM+A+ P+ +L IL ++ + Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLM------- 413 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+ Q +AIL++RL RLTGL R+ I +E L I Sbjct: 414 -------------------DNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSH 544 + +IL+S+ R+ II +EL+ ++ + RRT ++ G + +++ ++ E+ V VT++H Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P + +++Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G +IN+L +N GE+I ++ D S+ +N Y+ F T G V+R + + Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G A+ L DE++ V ++++ T G V F + +R GR + GV Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSM-GRTASGV 692 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L D VI ++ Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + ++EKG+GK+T + D+ I R GKGI+ +V++ N G L + Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ + I++++++G +IR + + RAT GV + D +V ++ ++ VD Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817 Query: 905 EAESTE 910 E +T+ Sbjct: 818 ETVATD 823 >gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] Length = 811 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 374/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + +SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K Sbjct: 5 ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR L++GQGNFGS+DGDP AA RYTE Sbjct: 65 SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK AH +L+DL K+TVDF PNYD + QEP VL R PN+LVNG GIAVGMATNIP H Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+ D A+I+NP + + L++ + GPDFPTG +I GR GI +AY+TGRG I IR Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGIIYGRAGIHSAYSTGRGIIKIRAR 244 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E +E +VVTE+PYQVNKA ++EKIA L+++K I +A +RDESDR+G R+ + Sbjct: 245 IMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIAM 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 LK+ A +I+N+LY++T L++ F + ++++ +PE L L+ F+A R+ VV+RR Sbjct: 305 GLKKDEMASIIINKLYKHTQLENSFGIILLSIVNNRPELLNLKETLQYFIAHRKVVVIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L KA RAH+L G IA+ NLDEVV++IR S P AR LM R Sbjct: 365 TKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMAR------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+++Q +AIL++RL +LTGL + + E L I +IL+ Sbjct: 413 --------------FDLTQIQAQAILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L I++ ELL V+ E RRT IV+ ++ ED IV EDMVVT+SH GY+KR P Sbjct: 459 SDQLVLEIVRDELLEVRTEYVDERRTEIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L++Y +QRRGGKG+ G+ DEDFV+ LF+ STH ++LFF++LG VY KV+ +P Sbjct: 519 LTLYHSQRRGGKGKIGMGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRA 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+GK + N+L+L E++ T++ E E +N ++ ATK G +++ L + +G Sbjct: 579 AKGKFISNLLNLAPDEQLATVLDVKEFEPGYN---IIMATKDGIIKKTDLLAYSNPRSNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L D++++ ++ L + G+ +RF S +R GR S GV+G++LA G Sbjct: 636 IIALSLGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRAM-GRVSRGVKGMTLAAG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ M E Sbjct: 695 DHLVGM-----------------------------------------------------E 701 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + + + + +E GFGKRTS ++ + R GKG+ + N GA+V++ V+++D Sbjct: 702 VLTHGKTLFSCTENGFGKRTSLDEYPLQKRGGKGVITIRTHERN--GAVVSILVVSNDDD 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++L++D G +IR+P+ +I + SR T GV + E+++ +R+ E + Sbjct: 760 LMLMTDAGKIIRMPMGDISVISRNTMGVRLMGMEPGEKLIGAQRLAEKDEE 810 >gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] Length = 899 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 384/921 (41%), Positives = 550/921 (59%), Gaps = 83/921 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M Q+ ++NK Y Sbjct: 2 SDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +++GQGNFGS+D DP AA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K H +L DL KDTVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 VRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A DNP+I + L I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRG 241 Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE S DRE+IV TEIPYQ NKA ++E+IAELVR+K+I I+++RDESD+ G Sbjct: 242 RYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+L+RG A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+E Sbjct: 302 MRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA+ R H+L GL +A+AN+D+++ I+ S N AR +L+ + W++ + Sbjct: 362 VVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGTV 421 Query: 428 KDLI-----------------------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 ++ + + + I LS Q AILE++L R Sbjct: 422 VAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHR 481 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 LTGL +D + E L +I E IL+ +L+ +IK E+L + + RRT IV+ Sbjct: 482 LTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSR 541 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 D ED I + +V+TVS GY K P+S Y AQ+RGGKG+S M+++D + L + S Sbjct: 542 TDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTS 601 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +VL F+ G V+ + + +PI S ARG+ L+NI+ L E +TTI+P P + Sbjct: 602 THATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEID 661 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 + +V FAT +G V+R +LS F I +G IA+ L+ D+++S E ++L G+ Sbjct: 662 SHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGK 721 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +RF + RV GR + GVRG+ +A + + S+ ++ Sbjct: 722 AIRFDENDARVM-GRTAKGVRGMRIANDEFIKSLVVIEEDV------------------- 761 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 Q IL E G+GKRT +F NR G Sbjct: 762 ---------------------------------QEILIACENGYGKRTPVDEFNAQNRGG 788 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 G+ A S+ N GALV V D IIL+S+KGTL+R PV ++ + R T+GV + Sbjct: 789 GGVIAIKTSERN--GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIR 846 Query: 885 TAKDERVVSVERIRESEIVDE 905 +KDE +V++ R+ ++ DE Sbjct: 847 LSKDEALVAMARVEDTGEEDE 867 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 14/248 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V + G VKRV LS + R G + + + D + I + V+ F+S Sbjct: 661 DSHFVFFATANGTVKRVELSQFANIRSNG--LIAIGLEEGDKLVSARITNGEQQVMLFAS 718 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + A+G + + + E I +++ ED ++ A ++ Sbjct: 719 SGKAIRFDENDARVMGRTAKG---VRGMRIANDEFIKSLVVIEEDVQE-----ILIACEN 770 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + +F NR G + + + + + E+DI+L + G VR P++ Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGTLVRTPVA 830 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + +GRN+ GV I L+K + +++MA V + + +++ ++ D + Sbjct: 831 QV-ATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTGDVLDADKDS 889 Query: 772 ITSLKNDS 779 +D+ Sbjct: 890 DVVDHSDT 897 >gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] Length = 853 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 543/906 (59%), Gaps = 84/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I+ V+++ M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 1 MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD Sbjct: 61 TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ ++DNPD + LME++ GPDFPTG +++G++GI+ AY TGR Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+I++R I+ +++I+VTE+PY VNKA ++E+IA L R+K I I D+ DESDR Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+++R ASA VILN LY+ T +Q+ F NM+A+ P+ +L IL ++ + Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLM------- 413 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+ Q +AIL++RL RLTGL R+ I +E L I Sbjct: 414 -------------------DNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSH 544 + +IL+S+ R+ II +EL+ ++ + RRT ++ G + +++ ++ E+ V VT++H Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P + +++Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G +IN+L +N GE+I ++ D S+ +N Y+ F T G V+R + + Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G A+ L DE++ V +I++ T G V F + +R GR + GV Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSM-GRTASGV 692 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L D VI ++ Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + ++EKG+GK+T + D+ I R GKGI+ +V++ N G L + Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ + I++++++G +IR + + RAT GV + D +V ++ ++ VD Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817 Query: 905 EAESTE 910 E +T+ Sbjct: 818 ETVATD 823 >gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424] gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424] Length = 853 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 374/903 (41%), Positives = 541/903 (59%), Gaps = 62/903 (6%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I ++ EM SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+ ++ + K Sbjct: 6 ERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LIEG GNFGS+D DPPAA RYTE Sbjct: 66 CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTES 125 Query: 134 RLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQ + LL D+ +TVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP Sbjct: 126 RLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE+VDG +A+I NP+I LM+ I GPDFPTGA ILGR+GIK+AY GRGSI +RG Sbjct: 186 HNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITMRG 245 Query: 253 VSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+ IE RE I+VTE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR G Sbjct: 246 VAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGM 305 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKR A V+LN LY+ T +Q+ F NM+AL +P+ TL L+ F+ FR EV Sbjct: 306 RIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRVEV 365 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KA +R HVL GL +A+ANLD ++++IR + + TA+REL+ + Sbjct: 366 ITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQ-------- 417 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSEVQ AIL+++L RLT L + I+ E L +I + Sbjct: 418 ------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLR 459 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL R R+ II++EL +K TPRRT I++ ++ D D I E V+ ++ GY+ Sbjct: 460 DILERRERVDHIIEEELNQLKTTHATPRRTEIIQEDGELIDLDLIANEQAVILLTEQGYI 519 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S + Q R +G+S ++++D V H +LFFS G VY +++P Sbjct: 520 KRMPVSTFGQQSRATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPS 579 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG ++ +L + + E+IT+++ E + Y++ T+ G +++ LS + I Sbjct: 580 SSRTARGVPIVQMLPIPKNEKITSMLAVSEFS---EDCYLIMLTRQGYIKKTVLSAYSNI 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726 +G IA+ L D++ V +E+ I++ T+ G + F +R GR + GV+ Sbjct: 637 RANGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRP-TGRTARGVKS 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L D++IS+ I+ S I + +++ E + Sbjct: 696 MKLKGTDEIISVDILP-----------------------SQVVANIATSEDEVEDETLET 732 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 EE E ++L ++ G+GKR FR+ R+G G++A N+ LVA+ Sbjct: 733 EEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRF--KNDHDQLVAIHV 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 VN +D++++V+++G +IR V+ I SR GV + +D+ + +V + S ++ Sbjct: 791 VNQDDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPPSAEGEDP 850 Query: 907 EST 909 ES Sbjct: 851 ESE 853 >gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] Length = 850 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 373/896 (41%), Positives = 553/896 (61%), Gaps = 85/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV + Sbjct: 3 EGEKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A I+NP+I++D L+ I+ PDFPTG VI G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIFGYEGVKEAFHTGRGRVVVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ +E I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V Sbjct: 243 AKAIIEEVQ-GKECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+YTSLQS FSVN +AL +P++ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNGRPQQLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA DRAH+L GL IA N+DEV+++IR S +P+ AR LM+R Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E N + I + DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDIIATIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK+EL VK + RR+ I + ED I E +V+T+SH GY+KR Sbjct: 456 GDKERRMSIIKEELQEVKTKYGDARRSEINYAGGSLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 ALSEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+++++Q +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + + L K G+ +RF S R GR + GVRG+SL Sbjct: 636 TNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPM-GRGASGVRGVSL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V + + Sbjct: 695 ANDQDEVIGMITVHNEED------------------------------------------ 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+R++NR GKG++ +++ + G LVA+ V Sbjct: 713 ----------HILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITE--KTGGLVAIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D+D +++++ G IR+ V ++R+ RAT+GV + + +++ + +V ++ + E + Sbjct: 761 DSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKEEEEE 816 >gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] Length = 836 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 368/903 (40%), Positives = 543/903 (60%), Gaps = 83/903 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++EE IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 AEEEMSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIPTHNLGEV+ ++DNPD + LM+++ GPDFPTG V+LG++GI+ AY TG+G+ Sbjct: 182 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGT 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+T R+QI+V EIPY VNKA ++E+IAEL REK I I D+ DE+DR+G Sbjct: 242 IIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL ++ +EE Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA RAH++ GL IA+ ++DE+++IIR S E A+ ELM + Sbjct: 362 VVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSK------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q +AIL++RL RLTGL R+ I E L I + Sbjct: 415 -------------------YGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II EL ++ RRT + G + EDED I ++D+VVT++H G Sbjct: 456 KDILAHRERIQQIIYDELKEIQRRFGDARRTELQVGDITNLEDEDLIEQQDIVVTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+ +++Q RGG+G G+ + +DF+ L STH +LFF++ G V+ K + + Sbjct: 516 YIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L ++ E+I ++ + + F TK G V+R + +F Sbjct: 576 PEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFK 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++VE + ++++ T G V F SA+R GR + GVRG Sbjct: 636 NIRSNGLKAINLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSM-GRAAAGVRG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +GD VI + Sbjct: 695 VRLREGDFVIGAGQLNP------------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L +SEKGFGK+T + ++ I R GKGI+ +V++ N G L + Sbjct: 712 ----------DSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKN--GPLAGLTT 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ ++ I+LV+ +G +IR V + RAT GV + +V ++ R+ + E D+ Sbjct: 760 VDGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDE 819 Query: 907 EST 909 + Sbjct: 820 QPD 822 >gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] Length = 850 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 363/898 (40%), Positives = 551/898 (61%), Gaps = 84/898 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K Sbjct: 6 NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP H Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+ Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 ++R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS+ Q +AIL++RL RLTGL RD + NE + I + DIL+ Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ II +ELL ++++ RRT ++ +L +EDED I E++VVT++H GY+KR+P Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 S ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++ Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE+++V +I++ T G V F IR GR++ GVRGI L Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI AI+ Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E + +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 I++++DKG +IR ++++ RAT GV + + D V ++ ++ + + +E T Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +E + ++ G VKR +S + R+ G + +RD D + ++ +++ + Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ + A G I R+ V +++ Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710 G ++ S++ I G +K + E + + T + DI++ T G +RF I Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKI 779 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GR ++GVR I+L V +M V D + + + + Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838 Query: 771 EITSLKNDSSVE 782 E Sbjct: 839 ARLLDAAQKDDE 850 >gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] Length = 826 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 395/893 (44%), Positives = 556/893 (62%), Gaps = 87/893 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+GM ++G +K Y K Sbjct: 19 ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR L++GQGNFGS+DGD AA RYTE Sbjct: 79 SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL++ A +L DL K+TVDF PN+D + +EPVVL AR PN+L+NG GIAVGMATNIP H Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +AVIDNP+I+ L+ ++GPDFPT I G+ GIK AY TGRGSI +R Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAK 258 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + I + I+VTEIPY VNKA ++E IA+LV++K+I I+DLRDESDR G R+VIE Sbjct: 259 AEIVD-ENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIE 317 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ A+A+VILNQL+++T ++S F VN +AL P +L + F+ R+EVV RR+ Sbjct: 318 LKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRS 377 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ R H+L GL IA+ N+D+ VRIIR S N + A+ LM++ Sbjct: 378 QFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEK------------- 424 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS+ Q+RAIL++RLARLT L R I +E L EI ++L+S Sbjct: 425 -------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAHLNEVLAS 471 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +L IIK ELL +K + RRT+IVE ++ DED I E++VVT+S+ GY+KR+P+ Sbjct: 472 PQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTGYIKRMPV 531 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQ 612 YR QRRGG G G+ ++EDFV DLF+ STH ++LFFS+ G VY KV+ +P S Q Sbjct: 532 DTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQ 591 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGKA+IN++++ GE I ++P + + ++V T+ G +++ LS F I +G Sbjct: 592 ARGKAIINLINIEPGEAINAMIPIKTFD---DQHFLVMCTREGTIKKTALSAFQNIRSTG 648 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+S DE++SV+ ++L+ T+ G+C RF S +R GR ++GV GI L + Sbjct: 649 IIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTM-GRPAMGVIGIRLTEN 707 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI+M IV Sbjct: 708 DKVIAMEIVSPG------------------------------------------------ 719 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 Q +LT+ E GFGKRT ++ +R G+G+ + N GA+VAV V +DQ Sbjct: 720 -----QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRN--GAVVAVISVMPDDQ 772 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I++ S +G + R+ V +I R T+GV + ++ VV+V R+ + DE Sbjct: 773 IVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825 >gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis WY96-3418] gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 868 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] Length = 837 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 387/901 (42%), Positives = 561/901 (62%), Gaps = 87/901 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + +SI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MVETDKPALPPT------ISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +S+R L++GQGNFGSV Sbjct: 55 RELNNYYNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSV 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + L+ DL K+TVDF PNYD S EP+VL AR PN+L+NG Sbjct: 115 DGDPPAAMRYTEARMTRIDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAA 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG +A+I++P+I + ALME I GPDFPTGA I GR GI+ A Sbjct: 175 GIAVGMATNIPPHNLREVIDGLIAMIEDPNITVSALMEHISGPDFPTGAYICGRAGIREA 234 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++R +EK RE I++TEIPYQ NK ++E+IA LV+EK+I I+++R Sbjct: 235 YETGRGSLMLRSRCEVEKQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVR 294 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQG R+V++LK+ +A+V++NQLY+ T LQ + + ++++ +PE L IL+ Sbjct: 295 DESDRQGMRIVLDLKKDENAEVVINQLYKMTPLQRGYGIILLSIVNNRPEILNLRQILEH 354 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ VV RRT + L KA ++AH+L GL IA+ NLDEVV +I+ S NP AR L+ R Sbjct: 355 FILHRKTVVYRRTAHDLRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINR 414 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS +Q +AILE+RL RLTGL R+ I E +L Sbjct: 415 --------------------------FALSAIQAQAILEMRLHRLTGLEREKIIEEYQAL 448 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI+ +L+ S +L II+QE +++++ RRT I+E ++ ED I REDMVV Sbjct: 449 MKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVV 508 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KR P+ +YRAQRRGGKG G D+DF++ + + STH ++LFF++ G V+ Sbjct: 509 TVTHAGYIKRNPVDLYRAQRRGGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFW 568 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRR 659 KV+ +P ARGKA++N+L L E++ I+P E Y++ AT+ G V++ Sbjct: 569 RKVYEIPQAGRLARGKAVVNLLDLAPEEKLAAILPVQSFEVPEGRECYILMATRKGVVKK 628 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + +F + R GKIA+ DEIL+ +N+ILL ++ G VRF IR GR Sbjct: 629 TTIQEFSRPVRRGKIALTFREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPM-GR 687 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+L D+++ ++++ Sbjct: 688 GATGVRGINLGSADELVGVSVLS------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E IL V+E G+GKRT ++R+ R GKG+ A S+ N G Sbjct: 711 --------------GDPETSILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERN--G 754 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 A+V + V D DQ++++++ G +IR+P+ ++R+ R T+GV +F+ +E+VV+++R+ E Sbjct: 755 AVVGMLQVTDEDQVMMITNAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVALDRLAE 814 Query: 900 S 900 S Sbjct: 815 S 815 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 20/217 (9%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754 + G RF +SAI+ + + + L + +++I ++ + Sbjct: 408 REGLINRFALSAIQ------AQAILEMRLHRLTGLEREKIIEEYQALMKEIEWLRRVLAD 461 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + R E + + + E +++ +E ++TV+ G+ KR Sbjct: 462 ESLVLQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVVTVTHAGYIKRNPV 521 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873 +R R ++ V D ++ +++G + V EI A Sbjct: 522 DLYRAQRR----GGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQA 577 Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907 R +G V + A +E++ ++ ++ E+ + E Sbjct: 578 GRLARGKAVVNLLDLAPEEKLAAILPVQSFEVPEGRE 614 >gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 864 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 381/913 (41%), Positives = 567/913 (62%), Gaps = 72/913 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 K +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y Sbjct: 4 PTKESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK H LL D+ K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP Sbjct: 124 EIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ EV++G +A+IDN + ++ L++ I PDFPTG+ I G GI AY TGRG +++R Sbjct: 184 PHNMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMR 243 Query: 252 GVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + E + + QIV+TEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RV Sbjct: 244 AKADIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV Sbjct: 304 VIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K + Sbjct: 364 RRTIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSM 423 Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ +D S Y I +D + L+E Q AIL LRL RLTGL +D I NE L Sbjct: 424 LEGVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELI 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IK + ILS S L+ ++K+EL+ ++D R++ I+ LD+ ED I EDMVVT Sbjct: 484 ERIKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GYVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY Sbjct: 544 LSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWS 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ P+ S ++G+ + NIL L++ ERIT +MP E W YV +TK G V++ Sbjct: 604 KVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVD 660 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS+F + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ Sbjct: 661 LSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSA 719 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV G+ L +++S+ + Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPD------------------------------------- 742 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G + Sbjct: 743 ---------------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKV 785 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++++ I++++D GTL+R +++R R+ +GV + + +E+++S++ +++ + Sbjct: 786 VVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845 Query: 902 I----VDEAESTE 910 E ES+E Sbjct: 846 EETHDDQELESSE 858 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + LG VK+V LS + R GK + + D D ++ + + + ++ FS G Sbjct: 646 YVFMSTKLGRVKKVDLSEFARPRSTGKI--AIGLNDGDELSYVALTDGNKQIMMFSDAGK 703 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A A + + L+ ++I +++ + V+ AT++G Sbjct: 704 AIRFDESDVRAMGRSA---AGVTGMRLHDNQKIVSVIVTN-----PDEGVVLAATENGYG 755 Query: 658 RRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R +S++ + R G IA+ +++ + DI++ T G VR +R Sbjct: 756 KRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVR 815 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 GR++ GVR I+L +++IS+ +V D + + + ++ Sbjct: 816 EC-GRSAQGVRLINLRNNEKLISLKVVKQEDEETHDDQELESSEATEQSE 864 >gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] Length = 812 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 366/891 (41%), Positives = 550/891 (61%), Gaps = 85/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G +K Y K Sbjct: 7 KVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + G+VMG+YHPHG++AIYDA R+AQD+S R +LI+G GNFGS+DGDP AA RYTE R Sbjct: 67 AGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K ++L D+ K+TVDF+PNYD +EP VL +R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MAKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++D + +I+NP ++ LM +++GPDFPTGA+I+GR GI+ AY TGRGSI++R + Sbjct: 187 LAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK +G++ +I+V EIPYQVNK+ +LE+IAELVR+KR+ I DLRDESDR+G ++VIEL Sbjct: 247 RIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R + ++LNQL++YT +Q F V M+AL P+ L +L ++ +++V+VRRT+ Sbjct: 307 RRDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVRRTR 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA RAH+L GL IA+ N+D ++ IIR S + + AR LM Sbjct: 367 YDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILM---------------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 G LSE Q +AIL++RL RL GL R+ I NE L I +L S Sbjct: 411 ----------GEFNLSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L IIK+E+ +K++ PRRT I D++ ED I ED V+T++H GY+KR+P++ Sbjct: 461 KMVLDIIKKEISEIKEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVN 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+AQRRGG+G +G+ +++DFV LF+ +TH ++LFF+ G VY+ K +P S A+ Sbjct: 521 TYKAQRRGGRGVTGMGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAK 580 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N+L++ E++ ++P E + Y+ AT+ G V++ L + + + G I Sbjct: 581 GTAIVNLLAITGDEKVNAVIPVKEFA---ADQYLFTATRSGIVKKTSLQHYDTVRKEGLI 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE++ V+ ++DILL T+ G VRF + +R GR + GV+GI L +GD Sbjct: 638 ALTLDEGDELIGVKLTDGKSDILLATRNGMAVRFNETNVREM-GRTARGVKGIELTQGDF 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+++ V D Sbjct: 697 VVALDAVKDDD------------------------------------------------- 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++E G GKRT ++R NR GKGI A ++ N+ G + + V D+++ Sbjct: 708 ----ELLMITELGMGKRTPLSEYRKQNRGGKGILAMRLT--NKTGLMAGIKVVRPGDELM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++S +G +IR+ V+EI + SR T+GV I +++VV++ R+ E +E Sbjct: 762 VISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARVAMREEDEE 812 >gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 835 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 86/886 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K Y Sbjct: 5 NEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYT Sbjct: 65 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 125 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++DG + +IDNP++ + LM I+GPDFPTGA I+G+ GI+ AY TGRG IV+R Sbjct: 185 PHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +IVVTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+V Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+ +V+LN LY++T LQ F V M+AL +P + IL ++ +++EV+ R Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM++ Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q AILE+RL RLTGL R+ I E L +I+ IL Sbjct: 413 ---------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +LLG+IK EL +K + RRT+I + + +++ ED I ED+V+T+++ GY+KR+ Sbjct: 458 ASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRI 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y AQRRGGKG + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 518 SADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G +IN++++ E+I T++ + ++ ATK+G V++ +S+F + ++ Sbjct: 578 QAKGTNVINLIAIEPDEKIQTVLTVSD---GKKEGFLFMATKNGIVKKTHISEFKNLRKN 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L V+ + +I++ T+ G VRF +R GR + GV+ I+L Sbjct: 635 GLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKD 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D + M I + + Sbjct: 694 DDVAVCMDIAVDGE---------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +SE GFGKRT ++++ NR G G+ +S+ + G L +D Sbjct: 708 -------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDD 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++L++ G IR+ V +I + +R+ GV + T +DE+VV++ +I Sbjct: 759 ELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804 >gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 864 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 381/913 (41%), Positives = 566/913 (61%), Gaps = 72/913 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 K +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y Sbjct: 4 PTKESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK H LL D+ K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP Sbjct: 124 EIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ EV++G +A+IDN + ++ L++ I PDFPTG+ I G GI AY TGRG +++R Sbjct: 184 PHNMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMR 243 Query: 252 GVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 E + + QIV+TEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RV Sbjct: 244 AKVDIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV Sbjct: 304 VIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K + Sbjct: 364 RRTIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSM 423 Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ +D S Y I +D + L+E Q AIL LRL RLTGL +D I NE L Sbjct: 424 LEGVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELI 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IK + ILS S L+ ++K+EL+ ++D R++ I+ LD+ ED I EDMVVT Sbjct: 484 ERIKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GYVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY Sbjct: 544 LSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWS 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ P+ S ++G+ + NIL L++ ERIT +MP E W YV +TK G V++ Sbjct: 604 KVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVD 660 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS+F + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ Sbjct: 661 LSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSA 719 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV G+ L +++S+ + Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPD------------------------------------- 742 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G + Sbjct: 743 ---------------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKV 785 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++++ I++++D GTL+R +++R R+ +GV + + +E+++S++ +++ + Sbjct: 786 VVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845 Query: 902 I----VDEAESTE 910 E ES+E Sbjct: 846 EEAHDDQELESSE 858 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + LG VK+V LS + R GK + + D D ++ + + + ++ FS G Sbjct: 646 YVFMSTKLGRVKKVDLSEFARPRSTGKI--AIGLNDGDELSYVALTDGNKQIMMFSDAGK 703 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A A + + L+ ++I +++ + V+ AT++G Sbjct: 704 AIRFDESDVRAMGRSA---AGVTGMRLHDNQKIVSVIVTN-----PDEGVVLAATENGYG 755 Query: 658 RRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R +S++ + R G IA+ +++ + DI++ T G VR +R Sbjct: 756 KRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVR 815 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 GR++ GVR I+L +++IS+ +V D + + + ++ Sbjct: 816 EC-GRSAQGVRLINLRNNEKLISLKVVKQEDEEAHDDQELESSEATEQSE 864 >gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] Length = 828 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 375/909 (41%), Positives = 557/909 (61%), Gaps = 92/909 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E+++ V +ID+ + ++ +++II+GPDFPTG +ILG GI+ AY T Sbjct: 182 NIPPHNLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +I+VTE+PY VNKA ++EKIAE+VR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G RVVIEL++ +A+V+LNQLY++T LQ F V M+AL +P ++ +L ++ Sbjct: 302 SREGMRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNEPRVMNILDMLNYYLQ 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S + A+ ELM+R Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSEVQ++AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FGLSEVQSQAIVDMRLRALTGLEREKLENEYQELMKQ 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ R LLG+IK+E+L ++D+ RRT I D+ ED I +ED+V+T++ Sbjct: 456 IRELKAILADRKLLLGVIKEEILIIRDKYGDERRTSIGFDEFDISMEDLIPKEDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ +++Q RGGKG G+ ED+V +LF+ TH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSHDTFKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG A++N+L L GE+I+ ++P E + + Y+ ATK G V++ ++ Sbjct: 576 YEIPEASRTSRGTAIVNLLQLMPGEKISAVIPIEEYK---DGEYLFMATKKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ + D+LL TK GQC+RF +R GR S+G Sbjct: 633 EYAHVRKTGLAAITLREEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRP-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++LA D+VI M Sbjct: 692 VRGMNLADRDEVIGM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + +L VSEKG GKRTS +F NR GKG++ +++ + G +V Sbjct: 707 --------QLDSQGCDLLIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESE 901 V VN +D++++++ +G +IR+ I + R T GV + + + + V S+ ++R + E Sbjct: 757 VKAVNHDDEVMIINTEGIIIRMKCEGISVLGRVTSGVKLINLQEGDIVASIAKVRKGDEE 816 Query: 902 IVDEAESTE 910 +D E T+ Sbjct: 817 PIDSVEDTD 825 >gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] Length = 900 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 388/908 (42%), Positives = 561/908 (61%), Gaps = 70/908 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WNK Sbjct: 3 ELAKEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVDF PNYDGS Q P VL + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D C A +D+ +I ++ LM+ I+GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGIINGRAGIIEAYRTGRGRIRI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + +E R+ I+VTEIPYQ+NKA ++E+IAELV+EK I I +LRDESD+ R Sbjct: 243 RARATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDK-NIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++RG +ADV+LN LY T ++S+F +NMVAL +P L G+++AFV R+EVV Sbjct: 302 IVIEVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQPRLLNLRGVIEAFVRHRQEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAH+L GLA+A+AN+D V+ +I+ S + A L+ + W ++ Sbjct: 362 TRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIA 421 Query: 430 LIDLIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + ++ +G YLS+VQ R ILE+RL RLTGL + + E Sbjct: 422 MLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEK 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+E L IL+SR RL+ +I+ EL ++++ R+T IV LD+ DED I E +VV Sbjct: 482 LEIIRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEETVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S+ GY K PL Y+AQ RGG+G++ +++ED + L +VSTH ++L F+S G V+ Sbjct: 542 TLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKVFW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P QA+G+ ++N+LSL + E+IT I+P + + +V AT +G V++ Sbjct: 602 LKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYD---GDRFVFMATSNGTVKKV 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + G IA++L+ + ++ V DI+L + G+ VRF + +R GR Sbjct: 659 ALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAM-GRT 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG++L + VI++ + Sbjct: 718 ARGVRGMNLPEDAAVIALIVPDP------------------------------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ILT E GFGKRT +F R GKG+ A S+ N G Sbjct: 741 ----------------DAQILTACENGFGKRTLVSEFPTKGRGGKGMIAIRTSERN--GK 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L+ VND ++++L+SD+GT++R+ +E+ + R T+GV + + ER+V +E++ E Sbjct: 783 LMGAVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEV 842 Query: 901 EIVDEAES 908 E+ Sbjct: 843 SDAAVEEA 850 Score = 75.6 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 68/443 (15%), Positives = 148/443 (33%), Gaps = 34/443 (7%) Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + T+ L+ + +++ ++ L +A+ + ++++IR A RE + Sbjct: 464 HRLTGLETEKLIQEYQEKLEIIRELLAILASRERLMQVIRDELT---AIREGFADARKTE 520 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + +D I+D + LS L + G I Sbjct: 521 IVASQLD-INDEDLIPEETVVVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCI- 578 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--- 542 E L ++S+ +L + P+ R +G + E + + Sbjct: 579 EHLLVVSTHDTILCFTSAGKVFWLKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLR 638 Query: 543 -----------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + G VK+V L + R G + + + + + + I H ++ Sbjct: 639 GYDGDRFVFMATSNGTVKKVALQEFSRPRSQG--LIALELEENNRLVGVAITEGHQDIML 696 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 SS G + + ARG +N + + ++ A Sbjct: 697 LSSEGKAVRFDENEVRAMGRTARGVRGMN---------LPEDAAVIALIVPDPDAQILTA 747 Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708 ++G +R +S+F R G IA++ +++ N+++L + G VR Sbjct: 748 CENGFGKRTLVSEFPTKGRGGKGMIAIRTSERNGKLMGAVQVNDGNEVMLISDQGTMVRI 807 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + + GR++ GV I L +G++++ + V E + +G+ Sbjct: 808 RADEVSLM-GRDTQGVTLIRLNEGERLVGIEQVEEVSDAAVEEAKASGAKKLRATDFNGE 866 Query: 769 TEEITSLKNDSSVEGNISEERCQ 791 + E N S + + Sbjct: 867 SVEGIDDAEQDKTGNNGSGDTDE 889 >gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47] gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47] Length = 955 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 355/911 (38%), Positives = 536/911 (58%), Gaps = 67/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WN + Sbjct: 65 QQVNKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQ 124 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K AR+ G+V+GKYHPHG+ A Y+ + RMAQD+S+R L++GQGNFGSVDGD AA RY Sbjct: 125 HKKSARVVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRY 184 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K + +L L +D VDF PNYDG+ +EP VL +P +L+NG GIAVGMATNI Sbjct: 185 TEVRLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNI 244 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E V+ C+ V+ NP+ +D +++++ PDFPTG ++ G + + AY TGRG +I Sbjct: 245 PPHNLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAII 304 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +HIE+ E I++ EIPYQVNK +LEKIA+LV EK+I ++ +RDESD+ G R Sbjct: 305 RAKTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMR 364 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIELKRGA+A+V+LN LY+ T LQ F +N+VAL +P++ + IL F++FR EVV Sbjct: 365 GVIELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVV 424 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R T + +KAR R +++ G AIA+ANLD+ + IIR S N + A L++R W A + + Sbjct: 425 TRVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAE 484 Query: 430 LIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +I +D + + T LS +Q + IL++RL LTGL ++ I E Sbjct: 485 MIKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYK 544 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I + DIL+ R+ II L +V E R+T+IV +++ +D I +M Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREM 604 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT++ GY+K YRAQ+RGG+G+ M++ D + LF+ +TH +L F++ G + Sbjct: 605 VVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRL 664 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + VW +P GS ++G+ ++N+L L E++T ++P DE +LY+ AT G V+ Sbjct: 665 HWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVK 723 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + + DF R+G A+ L D ++ ++D++L + G+ VRF +R G Sbjct: 724 KTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-G 782 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ L +G +VISM + + Sbjct: 783 RAATGVRGMRLDEGQKVISMLVCGDDEDVT------------------------------ 812 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LT +E G+GKR+ ++ R KGI + ++ N Sbjct: 813 ---------------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN-- 849 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +V+ V +ND+IIL++ G L+R VNEIR+ R T+GV + S + ++V +ER+ Sbjct: 850 GKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVT 909 Query: 899 ESEIVDEAEST 909 E++ D A Sbjct: 910 ENDDGDNASDN 920 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 69/445 (15%), Positives = 162/445 (36%), Gaps = 42/445 (9%) Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVA------NLDEVVRIIRFSPNPETARRELMQRSW 422 + ++ L + + A + + + V II S A +++ Sbjct: 526 MRLQSLTGLEQEKIHAEYKELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQ 585 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEV-QTRAILELRLARLTGLGRDDIRNELNSLG 481 I + + + + L++ ++ + G+ ++ Sbjct: 586 ----IVANAENVKTKDLIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKE-- 639 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I L + ++ LL + L + D P + +G + + E + Sbjct: 640 GDIINQLFVATTHDVLLCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAV 699 Query: 542 V----------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 + + G VK+ P+ ++ QRR G + + + + D + + Sbjct: 700 LPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRRAG--INAINLLEGDVLVGAAVTDG 757 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 V+ FS G V + + A G + + L++G+++ +++ +D + Sbjct: 758 KHDVMLFSDNGKVVRFSEDEVRAMGRAATG---VRGMRLDEGQKVISMLVCGDD----ED 810 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKL 702 + V+ AT+ G +R+ L+++ + R K + + +++S + ++I+L T Sbjct: 811 VTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTST 870 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G+ VR ++ IRV GRN+ GV IS+ +G +++ + V D + Sbjct: 871 GKLVRTRVNEIRVL-GRNTQGVTLISMEEGTKLVGLERVTENDDGDNASDNAAVEAEVVS 929 Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787 + + E + E N Sbjct: 930 ETEAEEAELEAKDEAILKEEENDEN 954 >gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2] gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2] Length = 870 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 386/889 (43%), Positives = 543/889 (61%), Gaps = 87/889 (9%) Query: 12 EEKGITS-VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ IT+ +SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 NQEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH +L DL K+TVDF PNYD + EP VL ++P +LVNG GIAVGM TNI Sbjct: 123 TEVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+GEVV G +A+++ PDI ++ LM I GPDFPT I GR GI AY TGRG I + Sbjct: 183 PPHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIYGRKGIHEAYTTGRGIITV 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +E + E IVVTE+PYQVNKA ++EKIAEL+R K I + +RDESDRQG R Sbjct: 243 RAKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I LKR DV++NQLY++T++ + F + +A+ +PE FTL +L+ F+ R V+ Sbjct: 303 IAIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNRPELFTLKELLEQFLNHRRSVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRT + KA DRAH+L GL A+ NLD VV +IR S +PE A+ L+Q Sbjct: 363 IRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQ---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L+++Q +AILE+RL RLTGL RD I E L ++ + Sbjct: 413 ----------------SFELTQIQAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQE 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 ILSS + IIKQEL +KDE RRT+IVE ++ ED I EDMVVTV+ GY+K Sbjct: 457 ILSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R P+++Y +Q RGGKG++ + +DEDFV LF+ STH + LF ++LG VY+ KV+ LP+ Sbjct: 517 RNPITLYASQHRGGKGKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + GKA++N+L+ QGE++ T++ PE + YVV ATK G V++ L + + Sbjct: 577 GRTSLGKAIVNLLNFEQGEKLATVLTVPEFV---EDRYVVMATKLGRVKKTDLMAYSRPR 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G I +KL DE+++ + DI L ++ G+ +RF + +R R S+GVRG+ + Sbjct: 634 SGGLIGIKLADDDELIAAGITDGKTDIFLGSEGGKVIRFDENDVRT-TARGSMGVRGMRI 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G V+ M ++ H Sbjct: 693 DPGSCVVGMEVLNHG--------------------------------------------- 707 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +LTV+E G+GKRT ++R R GKG+ + S+ N G +VA+ V D Sbjct: 708 --------QTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERN--GKMVALLLVED 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D+++LV+D G LIR + +I + SR T+GV + + + E+++ R+ Sbjct: 758 EDELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGEKLIGAARLP 806 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 Y E + + + + + ++ + + E ++L +E ++TV+ G Sbjct: 454 YQEILSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSG 513 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 + KR + +R GKG A + + L F + + + +++ G + + V Sbjct: 514 YIKRNPITLYASQHRGGKGKTAMGTKDEDFVEHL---FVASTHHTFLFITNLGKVYQSKV 570 Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 E+ +A R + G V + + + E++ +V + E Sbjct: 571 YELPMAGRTSLGKAIVNLLNFEQGEKLATVLTVPE 605 >gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] Length = 840 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 376/895 (42%), Positives = 533/895 (59%), Gaps = 80/895 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ +EMQ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+ ++ Y KCA Sbjct: 4 IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDAL R+AQD+S R LLI+G GNFGSVD DPPAA RYTECRL Sbjct: 64 RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123 Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 LL DL +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP H Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG A++ NP++ + LM I GPDFPTG ILG++GI+ AY TGRGSI +RGV+ Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243 Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE DRE IV+TE+PYQV KAA++EKIAELV +KRI I+D+RDESDR G R Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN L++ T LQ+ F NM+AL +P L L+ F+ FR EV+ Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L+G+ +A+ANL+ V+ +IR + + +AR EL+ R Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNR---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTG+ I E L +I + D+ Sbjct: 414 ----------------FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ II+ ELL+ K L+ PRRT I + +++D D I ++MVV V+ GY+KR Sbjct: 458 LERRERIDQIIRDELLTAKQRLNDPRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ + QRR +G+SG MR++D V H +VLFF++ G VY + +++P GS Sbjct: 518 LPVDTFDRQRRATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + E++T+I+P E ++ ++V T+ G +++ L+ F + Sbjct: 578 RTAKGTPVVQLLPIPIEEKVTSIVPVQEFA---SDEFLVMLTRTGFIKKTALAAFANLRA 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGVRGIS 728 +G IA+ L+ DE+ V E+DIL+ ++ G +RF +R GR + GV+ + Sbjct: 635 NGLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPL-GRTARGVKSME 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L KGD+++SM I+ E Sbjct: 694 LRKGDELVSMDILS-----------------------------------------CEQRE 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R + ++L V+ GFGKR +FR NR G G+ AT ++ L A+ V+ Sbjct: 713 RAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKF--RDQGDELAALRVVS 770 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D++++V+ +G +IR EI SRA GV + +D+ +V V + ES Sbjct: 771 CEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVPESAED 825 >gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00] Length = 886 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 389/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli] gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli] Length = 859 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 394/906 (43%), Positives = 560/906 (61%), Gaps = 64/906 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + ITS+++ E++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 DSAANEITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ G+V+GKYHPHG+AAIYD + RMAQ +S+R +LI+GQGNFGSVDGD A+ R Sbjct: 63 PHKKSARVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYD + P VL R PN+LVNG GIAVGMATN Sbjct: 123 YTEIRMSKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D CVA++++ ++ ++ LM I+GPDFPT +I G+ GI AY TGRG + Sbjct: 183 IPPHNLAEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIYGKQGIIEAYHTGRGRLF 242 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R IE ++++I+VTE+PYQVNKA ++EKIAELV+EKRI I LRDESD+ G Sbjct: 243 VRARVQIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIE+KRG + DV+LN L+ T LQ F +NMVAL +P L ++ F+A R EV Sbjct: 303 RVVIEVKRGENVDVLLNNLFSQTQLQVTFGINMVALVDGRPVLLNLKQLISEFLAHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+RAH+L GL IA+AN+D ++ +I+ + +P A+ +L+ + W+ + Sbjct: 363 VTRRTIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVA 422 Query: 429 DLIDLIDDSSY----TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +++ DD + T LS Q +AIL+LRL RLTGL ++ I E I Sbjct: 423 EMLTKTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTII 482 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL+ RL +I++EL+++K+E PRRT I+ ++ +ED I ED+VVT+SH Sbjct: 483 IDLLDILNQPERLCRVIQEELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSH 542 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVKR L VY AQRRGG+G+S +++EDF+ L I +TH ++L FSS+G VY KV+ Sbjct: 543 EGYVKRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYWLKVY 602 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP GS A+G+ +IN+L+L + ERIT ++P ++ AT G ++ L D Sbjct: 603 KLPEGSRIAKGRPIINLLALGENERITAVLPIQNYS---AEHFIFMATMKGTTKKTSLID 659 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G IA+ L D ++ V + D+LL T G+ +RF S +R GR + GV Sbjct: 660 FSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCM-GRTACGV 718 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L +G +VIS+ I Sbjct: 719 RGIKLQEGQRVISLIIAKPYG--------------------------------------- 739 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT + G+GK T +D R+++R G G+ A + N G +VA Sbjct: 740 --------------LILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARN--GQVVAA 783 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +D+++L+++K TL+R V EIR+ASR ++GV + + E +V +ERI E I + Sbjct: 784 VQVLPSDEVMLITNKATLVRTRVAEIRVASRHSQGVRLIRLNEGETLVGLERIEEDLITE 843 Query: 905 EAESTE 910 +S + Sbjct: 844 NPDSVD 849 >gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO] gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162] gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162] Length = 823 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 886 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 390/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+A+IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 815 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 374/883 (42%), Positives = 544/883 (61%), Gaps = 85/883 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ K Y Sbjct: 7 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 67 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 247 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L +++ +E V+ RR Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 366 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 460 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 461 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 520 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 580 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N+L++ ERIT ++ E + + ++ T+ G V++ L++F I +SG Sbjct: 581 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 637 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+LG+ + FP +R GR + GVRGI+L+ G Sbjct: 638 LRAVNLDEDDELIGVKFTDGENRIMLGTRLGKAITFPEDGVRSM-GRIARGVRGITLSDG 696 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M I+ Sbjct: 697 DEVVAMDILKSG------------------------------------------------ 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V + + Sbjct: 709 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRGSQE 761 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++L++ +G +IR V+EI + SR T+GV + + A+++RV S+ Sbjct: 762 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 804 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 9/222 (4%) Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 E+ + +E+ ++ T R P+ R R VGV+G+ + D V + Sbjct: 491 DASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDVVSDLL 549 Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 I + ++ + I+ Sbjct: 550 ITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVREFKP 609 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++F+ + KG K+T +F +N G+RA ++ + L+ V + ++I+L Sbjct: 610 DRFLFLGTRKGVVKKTPLAEF--ANIRKSGLRAVNLDE---DDELIGVKFTDGENRIMLG 664 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + G I P + +R R +GV + + + VV+++ ++ Sbjct: 665 TRLGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDILK 706 >gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237] gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237] Length = 844 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 375/901 (41%), Positives = 556/901 (61%), Gaps = 86/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV + Sbjct: 3 EGEKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A I+N DI++D L+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ RE I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V Sbjct: 243 AKASFEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +KR A +++LN LY+YT+LQS FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YIIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA DRAH+L GL IA N+DEV+ IIR S N + AR LM+R Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I + DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + IIK+EL VK + RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ARKERRMEIIKEELAEVKAKYGDERRSEINFAGGDLSMEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 ALSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++S+ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 SSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + DE+L + T ++I L K G+ +RF S R GRN+ GVRGI+L Sbjct: 636 QNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V + + Sbjct: 695 ANDDDEVIGMVSVQNLE------------------------------------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + IL VSEKG+GKR+S D+R++NR GKG++ ++ ++ G LVA+ V+ Sbjct: 712 ---------EEILVVSEKGYGKRSSIEDYRVTNRGGKGVKTISIT--DKTGGLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907 D+D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ ++ + VDE E Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDELE 820 Query: 908 S 908 Sbjct: 821 E 821 >gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] Length = 823 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra] gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra] Length = 861 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 352/892 (39%), Positives = 547/892 (61%), Gaps = 86/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +V+ + Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I+ Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808 >gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] Length = 856 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 352/892 (39%), Positives = 547/892 (61%), Gaps = 86/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +V+ + Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I+ Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808 >gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3] gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3] Length = 828 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 369/897 (41%), Positives = 535/897 (59%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K + Sbjct: 2 QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GK+HPHG+ A+YD+L R+ QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATN+ Sbjct: 122 EVRMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLA 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G +A+I+ P+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR Sbjct: 182 PHNLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR+G R+ Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V +AL P+ L +++ +V R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVINLALVDGVPKILNLKEMMQYYVKHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 362 RRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AILE+RL RLTG+ R I E + I+E I Sbjct: 412 ----------------FGLSEIQAKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S + + II++ELL VKD RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LNSPEKQMEIIREELLKVKDVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G +++DF+ +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L GE+I T + E ++V AT HG V++ L +F R Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINIRNFE---EPGFIVMATTHGIVKKTALEEFSHPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ +D DE+L ++ I+L G VRFP + +R GR ++GV+GI+L Sbjct: 633 TGIAAITIDEGDELLDARLTDGDHQIILAKNSGFVVRFPENEVRPM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + ++ I+M D Sbjct: 692 EDEKCIAMVTTRRMDTA------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ +IGALV + VND Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLK--PHEKIGALVGLLDVNDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D +IL++ G + R V++IRI R T GV + + + + ++ R+ +S+ + + Sbjct: 758 DDLILITVNGIVNRQHVSDIRITGRNTSGVRLIRLMQGDSISALARVPKSDEEGDGD 814 >gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 868 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 381/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256 V++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LKR Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 L K+++RAH+L GL +++AN+DE++++I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429 Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 S Y I D + L+E Q AIL LRL RLTGL +D I NE L +K Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVKYL 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S GY Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ P Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F + Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G+ Sbjct: 667 PRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +++S+ + Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V V Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905 +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D + Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851 Query: 906 AESTE 910 E+ E Sbjct: 852 IENNE 856 >gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] Length = 846 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 351/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +V+ + Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] Length = 898 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 357/906 (39%), Positives = 537/906 (59%), Gaps = 73/906 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M Q+ + Y K AR+ Sbjct: 8 LNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKKSARVV 67 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL R+AQD+++R L++GQGNFGS+DGD PAA RYTE R+QK Sbjct: 68 GDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEVRMQKL 127 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K TVD+ PNYD EP VL + PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 128 ASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPHNLTEL 187 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+ID+P I + L ++GPDFPTG VILG GI++AY TGRGS+ +R IE+ Sbjct: 188 LDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGTAGIRSAYLTGRGSVKVRARCEIEE 247 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 RE I+VTEIPYQVNK ++E+IA LVR+K++ I+D++D SDR G R+ I++K+ Sbjct: 248 DKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWIQVKKDH 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A ++LN+LY+ + LQ+ F VNM+A+ +PE L L+ F+ R VV RR +Y L Sbjct: 308 AAQIVLNKLYKMSDLQTSFGVNMIAIVNGRPEVLNLEKCLRHFIDHRRTVVTRRCRYELA 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA R ++ GL +AV ++D V+ +IR S +P+ A+ +LM ++ + + Sbjct: 368 KAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAE--PLDGFAKFLERCERPA 425 Query: 439 YTIGS--DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 I G L+E Q +AIL++RL RLTGL RD + E L I E IL+ + Sbjct: 426 EEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESILTDPDK 485 Query: 497 LLGIIKQELLSVKDELDT---------------PRRTRIVEGLLDMEDEDCIVREDMVVT 541 L+ +I++ELL+++ E RRT ++ L+++ D + E MVV Sbjct: 486 LMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVADESMVVM 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ YVKR+P YR Q RGG G R D+D + +LF S H VL F++ G V++ Sbjct: 546 ITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFTNTGRVFR 605 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 ++V+ P+G+ R KAL+N L L +GE+I ++ + E+E ++ +VV A++ G ++R Sbjct: 606 KRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEE-VDDDHFVVLASRQGYIKRT 664 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS+F I SG IA + D ++ + DI++ ++ GQ +RF + +R GR Sbjct: 665 SLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVRPM-GRT 723 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L GD+V+++ ++ + Sbjct: 724 ARGVRGMGLRDGDEVVNILVLDRENEGEVGF----------------------------- 754 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 LTV EKG+GKRT + ++R +RSG G++ VS+ N G Sbjct: 755 --------------------LTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V + V + DQ+++V+ +G +IR PV I RAT+GV + +E VV + R+ + Sbjct: 793 VVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVRLIRLNDEEVVVGLARVDDP 852 Query: 901 EIVDEA 906 +E Sbjct: 853 SDGEEP 858 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 11/264 (4%) Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 E+ + + VV S GY+KR LS ++ R G + + D + D + + Sbjct: 642 REEEVDDDHFVVLASRQGYIKRTSLSEFQNIRSSG--LIAANVVEGDMLIDAKLTNGGCD 699 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ S G + + ARG + + + + + E+ ++ Sbjct: 700 IIMASREGQAIRFDEADVRPMGRTARGVRGMGL----RDGDEVVNILVLDRENEGEVGFL 755 Query: 649 VFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 K G +R S++ +RSG +K+ +++ + + + +++ T G+ Sbjct: 756 TVCEK-GYGKRTPASEYRSQSRSGLGLKTIKVSERNGKVVGMVKVREADQLMVVTSQGKI 814 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R P++ I GR + GVR I L + V+ +A V + ++ Sbjct: 815 IRTPVAGISEL-GRATQGVRLIRLNDEEVVVGLARVDDPSDGEEPTEGEAAALAEGEAAP 873 Query: 766 SGDTEEITSLKNDSSVEGNISEER 789 + + S E Sbjct: 874 AEAADGPAEDAEAESGADADGEGE 897 >gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] Length = 889 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 389/906 (42%), Positives = 543/906 (59%), Gaps = 71/906 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ DI ++ LME I GPDFPTGA+I GR GI AY TGRG + +R + Sbjct: 187 LSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILP------------------------------ 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724 V + + + T G + ++ R S G+ Sbjct: 637 ---------------------VREYEEGRHVFMATASGTVKKTALTEFSRPR----SAGI 671 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++L +GD++I V D + + + + T+ Sbjct: 672 IAVNLNEGDELIG---VDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTATGVRGINLNG 728 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 729 DDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE-DD 845 Query: 905 EAESTE 910 E E E Sbjct: 846 EFEGEE 851 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L+ + R G + DE DL V+ FS+ G V Sbjct: 646 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSTDGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + ++ A G + ++LN +R+ +++ + ++ T++G + Sbjct: 704 VRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTENGYGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R + ++ +R+ + + + +++ + I++ T G VR +S + Sbjct: 755 RTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRVSEV-S 813 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A+ + V+ + V + D E + +E + Sbjct: 814 VVGRNTQGVTLIRTAEDEHVVGLQRVAEPEDDEFEGEELDAEEGSAENTAQSASENTNDI 873 Query: 776 KNDSSVEGNISEERCQ 791 + + + E+ Sbjct: 874 ATEENGDDEAPEDDNA 889 >gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] Length = 824 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 378/899 (42%), Positives = 544/899 (60%), Gaps = 85/899 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + I + E + V I DEM+ SY+ Y+++VI+GRA+PD RDGLKPVHRRIL M + Sbjct: 11 DEKIEQHDGEGGRVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNE 70 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ +K Y K AR+ G+V+GK+HPHG+ A+YD+L RM QD+SLR LI+GQGNFGSVDG Sbjct: 71 AGITHDKAYKKSARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDG 130 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ K +L+D+ K TVDF+PNYDGS +EP VL ++ PN+L+NG GI Sbjct: 131 DSAAAMRYTEVRMDKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGI 190 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HNLGEVVD V +ID+P+ +L L +I++GPDFPTG +I+G +GIK+AY Sbjct: 191 AVGMATNMAPHNLGEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGTSGIKSAYE 250 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGR I +R V+ IE+ D+ +IVV E+PYQVNKA ++E IA LVR+K+I I+DLRDE Sbjct: 251 TGRSPIYLRAVTEIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDE 310 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R+G RVVIELK+ A+ V+LNQLY+ T L++ F + +AL P L +++ ++ Sbjct: 311 SGREGMRVVIELKKAANPKVLLNQLYKQTQLETTFGIINLALVDGVPRVLNLRELIQIYL 370 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R +V+ RRT + L KA +RAH+L GL +A+ N+DEV+++IR S E AR L+ Sbjct: 371 KHRIDVISRRTVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLIS--- 427 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L E+Q +AIL+++L RLTGL R I E N L Sbjct: 428 -----------------------NFDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLID 464 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL++ R II+ E+L +KD+ RRT I ++ DED I E++VVT Sbjct: 465 TIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVVVTS 524 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+K +PL Y Q RGG+G G+ +++D V +F+ STH +LFF++ G VY +K Sbjct: 525 TQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQK 584 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P GS Q+RGKA++N+L L +GE + ++P + E N+ Y+ T+ G V+R L Sbjct: 585 VYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFE---NDRYLFMGTRDGTVKRCSL 641 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF ++G IA+ L DE+++V DI+L ++ G+ +R +RV GR + Sbjct: 642 SDFSNPRKAGIIAISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVM-GRTAR 700 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ LA D ++S+ +V Sbjct: 701 GVRGMKLAGPDVIVSLDVVDSDGT------------------------------------ 724 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +LTV+E GFGKRT ++R R G+G+ N G +V Sbjct: 725 -----------------LLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDMRN--GPVV 765 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V D+D+IIL S G ++R+PV +IR+ R TKGV I + + +++VS+ RI++ E Sbjct: 766 TVKTVEDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLARIKKEE 824 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ AD + + + A R + ++ + + ++ + E ++L +E+ + Sbjct: 462 LIDTIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVV 521 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T ++ G+ K + + +R G+G+R + + + +G ++F + +D I+ +++G Sbjct: 522 VTSTQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVG---SIFVASTHDYILFFTNRG 578 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + V +I SR ++G V + A+ E V ++ + + E Sbjct: 579 KVYWQKVYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFEND 624 >gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 859 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 413/900 (45%), Positives = 606/900 (67%), Gaps = 43/900 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + I D I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MQKTEIPKDN----NIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+ Sbjct: 57 YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K + +L+DD+ K+T+ F+ NYD + +EP VL A+YPN+LVNG G Sbjct: 117 DGDPAAAMRYTETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGE+++G +A+IDN DI + LM+ + GPDFPTG VI+G+ IK+ Sbjct: 177 GIAVGMATSIPPHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHG 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS IRG +E RE++V+T IPYQVNK+ + E+IA+LVREK+I I D+R Sbjct: 237 YNNGRGSFKIRGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G RV I+L+ G + I QLY+ T ++S F N +A+ KP+ TL L Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSN 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F++FRE++V+++TK+ L KA +RAH+L+GL+++V NLD++++IIR S PE A++ +++ Sbjct: 357 FLSFREDIVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKT 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W + + LI L++ G LSE Q AILELRL +LT LG ++I E+ L Sbjct: 417 KWKINKSQKLISLVE----GKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKL 472 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I I+SS+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I ++ +++ Sbjct: 473 AELIARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVII 532 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR L + Q+RGGKG+SG+ RD+D V V+THTSVLFFS+ G VYK Sbjct: 533 TVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYK 592 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K W++P GS ++GK+L NIL L + I++IMP PE+E+ N ++FAT G VR+N Sbjct: 593 VKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKN 652 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L DF IN SGKIAMKLD+ D+I+ V+ C + DI+L+TK G+C+RF +RVF GR+ Sbjct: 653 SLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRS 712 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S G++GI LA DQ++S++++ + + + Sbjct: 713 SKGIKGIELAPNDQIVSLSVIDN---------------------------------DKTK 739 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G S++ E+K KE+F+L++SE G+GK+TS D+R++NR GKGI S N G Sbjct: 740 KNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRN--GN 797 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + + FPV + D+I++ ++KG +IRV V EIR A R T+GV I + +E+VVS +I ++ Sbjct: 798 ITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDN 857 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 98/326 (30%), Gaps = 83/326 (25%) Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC------TQENDILLTTKLGQCVRFPI 710 +++ K + I + L E L T E+ K + Sbjct: 366 IKKTKFD-LQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQ 424 Query: 711 SAIRVFAGRNSVG--------VRGI---SLAK------GDQVISMAIVLHADADYDERIC 753 I + G+ G V I L K + + + + A Y + I Sbjct: 425 KLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIIS 484 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 K + + +E ++ + + + +E K+ I+TV+ +G+ KR S Sbjct: 485 SKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVTLQGYIKRGS 544 Query: 814 SYDFRISNRSGKG-----------------------------------IRATDVSKI--- 835 + R GKG ++A + + Sbjct: 545 LDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGSSS 604 Query: 836 ------------NEIGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIASRAT 877 ++ ++ P+ +N+ QII + +G + + + + Sbjct: 605 SKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSI--NA 662 Query: 878 KGVVIFSTAKDERVVSVERIRESEIV 903 G + ++++V V +I + + Sbjct: 663 SGKIAMKLDNNDKIVGV-KICQDDQD 687 >gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] Length = 823 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 363/904 (40%), Positives = 549/904 (60%), Gaps = 87/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818 Query: 907 ESTE 910 ++TE Sbjct: 819 QATE 822 >gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21] gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21] Length = 838 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 367/918 (39%), Positives = 531/918 (57%), Gaps = 90/918 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MDDQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ NK Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+ Sbjct: 61 NEAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ K A +L D+ KDTVDF PNYD S +EP VL ++ P +L+NG Sbjct: 121 DGDPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSA 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVD V +ID+PD ++ LM I+GPDFPTGA ILG +GI+ A Sbjct: 181 GIAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGVSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +H+E ++ +IVVTEIPYQVNKA ++E IA LV++K + I DLR Sbjct: 241 YTTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIEL+ +++LN+LY++T +Q F + +AL P L IL Sbjct: 301 DESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRILNLKEILVY 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ ++EV+ R+T+Y LNKA++RAH+L GL IA+ +LDEV+ IR S E AR L+ + Sbjct: 361 YLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLISK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE Q +AIL++RL RLTGL R I +E + Sbjct: 421 --------------------------FGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEV 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I +L+ +++GI K + L VK PRRT IV +++ ED I ED+V+ Sbjct: 455 MATIAYLESVLADEHKIMGIAKDDFLDVKKRFGDPRRTSIVPDAGEIDAEDLIAEEDIVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--------DEDFVTDLFIVSTHTSVLFF 592 T+SH Y+KR L+ +R Q RGG+G + DF L + STH ++LFF Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY++K + +P QA+G + N+L L + E+IT I+ S N ++ AT Sbjct: 575 TNQGRVYRQKGYEIPEAGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMAT 634 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G +++ +S+F R+G IA+ LD ++++ V+ + +DILL T+ G +RF S Sbjct: 635 NKGVIKKTSVSEFKTARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESD 694 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI+L D ++SM Sbjct: 695 VRPM-GRTAHGVRGITLRHHDVLVSMD--------------------------------- 720 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + +LTV+E G GKRT ++R+ R GKGI V Sbjct: 721 -------------------SCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGIINLKV 761 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + N+ G +V VND+ I+L+S G +IR+ ++I SR +GV + K ++V Sbjct: 762 T--NKTGDIVGSKLVNDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGDKVA 819 Query: 893 SVERIRE-SEIVDEAEST 909 ++ + S+ E E+ Sbjct: 820 ALAIVDTVSDEEKETENA 837 >gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170] gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170] Length = 844 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 380/898 (42%), Positives = 554/898 (61%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D S QEP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA IDN DI++D L+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR+G RVV Sbjct: 243 AKAVIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+YT+LQS FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA DRAH+L GL IA N+DEV+ IIR S N + AR LM+R Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R+E + I + DIL Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK ELL VKD+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 DRKERRMQIIKDELLEVKDKYGDERRSEINFAGGDLSIEDMIPNEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE NN +V+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + DE+L + T ++I L K G+ +RF S R GRN+ GVRGI L Sbjct: 636 QNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGIRL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V + + + Sbjct: 695 ADDNDEVIGMVSVNNFEDN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR++ D+R++NR GKG++ +++ + G LV++ V+ Sbjct: 714 -----------ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITE--KTGGLVSIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ + + E Sbjct: 761 DADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEE 818 >gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68] gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68] Length = 823 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] Length = 879 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 385/904 (42%), Positives = 564/904 (62%), Gaps = 86/904 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + + +I EM++S+L YA++VI+ RA+PD+RDG+KPVHRRIL+GM G+ +K Sbjct: 4 DHDSKLKEQNIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKP 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R +L++GQGNFGS+DGD AA RY Sbjct: 64 YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A L+ D+ KDT+DF NYDG+ +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 124 TEARMSKIAMELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G + + NPDI + LME+I+GPDFPT +ILGR+GI+ AY TGRGS+++ Sbjct: 184 PPHNLTEVINGVLELSKNPDISIPELMELIQGPDFPTAGLILGRSGIRRAYETGRGSVIM 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R + IE +E I+++EIPYQVNKA ++EKIAEL R+K++ I DLRDE+ ++G R Sbjct: 244 RAKTLIETRPNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVR 303 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R A+A+VILN LY+ T LQ+ F VNM+AL KP+ + + ++ ++ VV Sbjct: 304 IVIDVRRDANANVILNNLYKQTPLQTSFGVNMLALVDGKPQVLNIKQAIYHYLEHQKTVV 363 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA DRAH+L GL IA+ ++DE++ +IR S N A + L ++ Sbjct: 364 RRRTAYNLKKAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQ--------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL RD I +E L I E Sbjct: 415 -----------------FKLSERQAQAILDMRLRRLTGLERDKIESEYQELLKYIDELRA 457 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL+ +LL II++EL+ ++D+ RRT IV G D+EDED I E++V+T+S Y+ Sbjct: 458 ILADEEKLLQIIREELIEIRDKYGDERRTEIVAGGLEDLEDEDLIDEENIVITLSSNNYI 517 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YRAQ RGG+G G+ DEDFV+ + STH +VLFF++ G VYK K + +P Sbjct: 518 KRLPASTYRAQHRGGRGIQGMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPE 577 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G ++N++ L++ E I+T++ E + Y+VFATKHG ++R+ LS F +I Sbjct: 578 LSRQSKGIPIVNVIDLDKDESISTMIAVKNLE--REDAYIVFATKHGLIKRSNLSHFSRI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N++GKIA+ DE+++V +++ TK +RF + +R GR + GV+GIS Sbjct: 636 NKNGKIAINFREEDELIAVRLTDGNKQLIIGTKHASLIRFEENKLRPL-GRTAAGVKGIS 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+VI + ++ D Sbjct: 695 LREGDEVIGLDVIESND------------------------------------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E +L V+E G+GKRT ++RISNR GKGI+ +++ N G LV + VN Sbjct: 712 --------EHEVLVVTENGYGKRTKESEYRISNRGGKGIKTATITEKN--GNLVCITTVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEA 906 N+ I++V+D G +IR+ V E R+ +GV + + + V +V ++ + E ++ Sbjct: 762 GNEDIMIVTDHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVMDEDK 821 Query: 907 ESTE 910 E E Sbjct: 822 EPGE 825 >gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065] Length = 831 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 351/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +V+ + Sbjct: 692 ADKAVSMDVVIEDET--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus] Length = 903 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 382/890 (42%), Positives = 559/890 (62%), Gaps = 84/890 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R LI+GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++G +++ NPDI + LME ++GPDFPT +ILG++GI+ A+ TGRGSI Sbjct: 183 IPPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTE+PYQVNKA M+EKIAEL R+K+I I DLRDE+ R G Sbjct: 243 MRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL +P+ +L L+ ++ ++ V Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S + A L ++ Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQ-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I +E L I+E Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYIELIAYIEELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL+ +LL I++ EL+ +++ RR+ I GL D+EDED I E +V+T+SH Y Sbjct: 457 EILADEEKLLQIVRNELIDIRERYGDERRSEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L+ E I+T++ + E + Y+VFAT+ G V+R+ LS+F Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLE--SEDDYLVFATRKGRVKRSALSNFSH 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ + DE+++V E DIL+ T +RF + +R GR + GV+GI Sbjct: 635 INKNGKIAISFKNDDELIAVRLTDGEQDILIGTSHASLIRFNETTLRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L + D+VI + + Sbjct: 694 TLREDDKVIGLDVTN--------------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ IL V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 709 ------AESDEEILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERN--GNIVCITSV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++V++ G +IR+ V +I RA +GV + +++ V +V ++ Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810 >gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] Length = 884 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 543/896 (60%), Gaps = 55/896 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 4 SEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+R LI G GNFGS+D DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYT 123 Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL+ + +L D+ +TV+F N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VDG VA+I NP+I LM+ I GPDFPTGA ILGR+GI+ AY TG+GSI + Sbjct: 184 PPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITM 243 Query: 251 RGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE RE I++T++PYQ NKAA++EKIAE+V +KRI I+D+RDESDRQ Sbjct: 244 RGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQ 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+EL+R A V+LN LY+ T LQS F NM+AL +PER TL LK F+ FR Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA++R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 364 ETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIER------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSEVQ AIL+++L RLT L I+ E L I + Sbjct: 418 --------------------FELSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II+ E + +K+ +PRRT I ++ED D I E ++ V+ G Sbjct: 458 LQDILARRERILDIIESEAIELKERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G+SG M+++D + H S+LFFS G VY K +++ Sbjct: 518 YIKRMPVNTFDAQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG ++ +L + + ERIT+++P E ++ Y+V TK G +++ +LS F Sbjct: 578 PVASRTARGVPIVQMLPIPKQERITSVVPVSEFS---DDEYLVMLTKGGYIKKTELSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L DE+ V ++ I++ ++LG + F +R GR + GV Sbjct: 635 NIRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L K D++ISM I+ A ++ E + Sbjct: 694 KSMKLGKKDELISMDILPSAIVSSIAQL------------------ESEETDIEDEEVLE 735 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E +E I+ ++ G+GKR FR+ NR+GKGI AT + +V + Sbjct: 736 TETEETTVENNQELAIMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVGL 795 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 VN++++++L++ +G +IR VN I SR+ GV + ++ + +V + S Sbjct: 796 QVVNEDNELMLITSRGIIIRQAVNAIPTQSRSATGVRVQRLDDEDAIAAVAIVPPS 851 >gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 861 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 405/907 (44%), Positives = 575/907 (63%), Gaps = 69/907 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+EH + + + V+I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSEHTENPTH-FKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV Sbjct: 60 EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K +H LL DL K+TVDF NYDGS EP+VL R PN+L NG Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV++ C+ IDN DI +D L+EI+ GPDFPT +I G +GI+ A Sbjct: 180 GIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGIINGASGIRQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I +R V HIE D++ IVVTE+PYQVNKA ++ KIA+LV++KRI I LR Sbjct: 240 YETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+VIEL+RG +V+LN LY+ T +Q++F +NMVA++ P+ TL IL+A Sbjct: 300 DESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKGMPKLMTLKNILEA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+A R +VV RR+ + LNKAR+ AH+L GLA+A+ N+D+++ +I+ + N A+ L+ + Sbjct: 360 FIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAK 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRD 471 +W S IK+LI D + DG LS+ Q +AIL+L+L RLTGL ++ Sbjct: 420 TWQGSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKN 479 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I +E N L IK LDIL + RL+ +I++EL+ ++ R T+I+E +D+ ED Sbjct: 480 KIFDEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLED 539 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +E VVT+SH GYVK LS Y+AQRRGGKG+ ++DEDFV LFI ++H +VL Sbjct: 540 LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLC 599 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSSLG VY KV+ LP+ S ARGK ++N+L L + E I I+ + + N +V Sbjct: 600 FSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFD---ENHFVFMV 656 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G ++ L++F + + G IA++L D+++ VE + E+DI+L + G+ +RF S Sbjct: 657 TSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKES 716 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RV GR ++GVRGI LA D+V+S+ +V Sbjct: 717 DVRVV-GRTAIGVRGIKLANADKVVSLIVVN----------------------------- 746 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++ ILT +EKGFGKRT ++R R G G+ + Sbjct: 747 ------------------------QDNPILTTTEKGFGKRTRLNEYRSQARGGLGVISIK 782 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S N G +V + D D+++L+S+KGTL+R ++ I R T+GV + + K E++ Sbjct: 783 TSDRN--GKVVGAIQITDEDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEKL 840 Query: 892 VSVERIR 898 VS+ +I Sbjct: 841 VSIAKIA 847 >gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 836 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 375/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+++P+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ TSLQ+ FS NM+A+ P+ TL I+ +++ ++EV+ R Sbjct: 302 IEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FQLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II QE+ +K + PRRT ++ +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPDRISAIIIQEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEVEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ +++ +N + F T+ G V+R S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEEETIQTIINARKEDI--DNKFFFFTTRQGLVKRTNASEFGNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ TK G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKDGDELINVLLTDGSEDIIIGTKSGYSVRFEEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD VI + + + Sbjct: 693 DGDLVIGASRISDS---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V + Sbjct: 707 -------QEVLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKN--GQLAGLVTVTGH 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I+++++KG +IR + ++ R+T GV + +D ++V+ + D AE Sbjct: 758 EDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVTFALVDPEAEKDFAE 814 >gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397] gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall] gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397] gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall] Length = 841 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 352/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V + ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502] gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502] Length = 836 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 352/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 3 NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+V Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ R Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+ +SM +VL +A Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V + ++D Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] Length = 849 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + I D K I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+ Sbjct: 57 YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGE++DG +A+I+N DI + LM+ I GPDFPTG VI+G+ IK Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS IRG +E RE++V+T +PYQVNK+ + E+IA+LVREK+I I D+R Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G RV I+L+ G + I LY+ TS++S F N +A+ KP+ L L Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICNLKEFLTN 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S P+ A++ L+ Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W + LI L++D LS+ Q AILELRL +LT LG ++I E+ L Sbjct: 417 KWKINKSLKLISLVEDKKEK----NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 IK I++S+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I +E +++ Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR LS + Q+RGGKG+SG+ RDED V V+THTSVLFFS+ G VYK Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K W++P GS ++GK+L NIL L + I++IMPFP++ES NL +VFAT G VR+N Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L DF IN +GKIA+KLD D+I+ VE C + D++L+TK G+C+RF +R+F GR+ Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S G++GI L+ D+++S++I D Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 K +F+L+++E G+GK+T + ++R++NR GKGI S N G+ Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + + FPV + D +++ ++KG +IRV V EIR A R T+GV I + DE+VVS +I ++ Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 19/259 (7%) Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + F R+ I A+ +E + +E+ I+ T G R +S+++ Sbjct: 498 KTIKEKFAVPRRTKIIDAILNYDIEETIQ-----KESVIITVTLQGYIKRGALSSVKQQK 552 Query: 718 GRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 R G GI+ D V+ ++++ H + + + A + T + SL Sbjct: 553 -RGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLF 611 Query: 777 N-----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 N + +I +E K I+ + KG ++ S DF N +GK A Sbjct: 612 NILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIK 669 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890 + + +V V D+ ++L + G IR ++RI R++KG+ + ++ Sbjct: 670 L---DPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDE 726 Query: 891 VVSVERIRESEIVDEAEST 909 +VS+ + +I + +S Sbjct: 727 IVSLSITNKEKIKKDTKSD 745 >gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980] gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980] Length = 823 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 364/904 (40%), Positives = 549/904 (60%), Gaps = 87/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906 N+ I+L++DKG +IR V+ + R+T GV + D +VV++ + + E Sbjct: 759 GNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818 Query: 907 ESTE 910 ++TE Sbjct: 819 QATE 822 >gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 850 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 356/907 (39%), Positives = 552/907 (60%), Gaps = 84/907 (9%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + + IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ Sbjct: 8 NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 GV +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L++G GNFGSVDGD Sbjct: 68 GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGD 127 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 AA RYTE RL K A +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG GIA Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNL EV+ ++DNPD LME++ GPDFPTG V++G++GI+ AY T Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYET 247 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGSI++R IE + +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DES Sbjct: 248 GRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 307 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+ P +L IL+ ++ Sbjct: 308 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLE 367 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + EV+ RRTKY L KA+ RAH+L GL IA+ ++DE+++IIR S E A+ +L+ Sbjct: 368 HQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---- 423 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AIL++RL RLTGL R+ I E N L + Sbjct: 424 ----------------------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 461 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542 I++ ILSSR R+ II +ELL ++ + RRT ++ G + +++ ++ E+ V+ + Sbjct: 462 IEDFKAILSSRDRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSL 521 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KR+P + ++AQ RGG+G G+ + D+DFV L STH +LFF+ G VY+ K Sbjct: 522 THNGYIKRLPTTEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMK 581 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P A+G ++N+L++N GE+I ++ + ++ ++F T +G V+R + Sbjct: 582 GYEIPEYGRSAKGIPIVNLLNINSGEKIEAVINVSDRKNDVQ-KDLLFVTLYGTVKRTPV 640 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF I +G IA+ L D++++ Q ++++ T LG + F S +R GR++ Sbjct: 641 SDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSAT 699 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L + D V+ ++ Sbjct: 700 GVRGIRLRENDYVVGADVL----------------------------------------- 718 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + +SEKGFGKRT + D+ I R GKG++ ++++ N G L Sbjct: 719 ------------NPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLS 764 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + V+ N+ I+L++DKG +IR + ++ R+T GV + +D +V ++ ++ + E Sbjct: 765 GLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQED 824 Query: 903 VDEAEST 909 ++++ Sbjct: 825 EASSDAS 831 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 V+ G VKR P+S + R G + +++ D + + I+ + +V+ + LG+ Sbjct: 629 VTLYGTVKRTPVSDFANIRSNG--LIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + A G I R+ + + V ++ G +R Sbjct: 687 NASDVRSMGRSATGVRGI---------RLRENDYVVGADVLNPDSEVFIISEKGFGKRTP 737 Query: 662 LSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + K A + + + T + DI+L T G +RF I + G Sbjct: 738 AADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDV-SQTG 796 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 R+++GV I + + +V +MA V + + MS+ Sbjct: 797 RSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSNGDTSEDSDS 848 >gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708] gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708] Length = 869 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 369/906 (40%), Positives = 535/906 (59%), Gaps = 49/906 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG VA+I N +I LM+ + GPDFPTGA ILG + IK AY TGRGS+ + Sbjct: 184 PPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTM 243 Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE +RE I++TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR Sbjct: 244 RGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T LQS F NM+AL +P+ TL L F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 + RRT Y L KA +R H+L GL IA+++LD ++ IR + + +A+ EL+ Sbjct: 364 ATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELIT------- 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSEVQ AIL+++L RLT L D IR E L ++I + Sbjct: 417 -------------------NYGLSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL R R+L II+ E+ +K + TPRRT I D++D D I E +++ ++ G Sbjct: 458 LQDILDRRERVLEIIETEVTQIKTQFATPRRTIITHAEGDIDDIDLIANEKVLILLTKQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G++G ++D+D + H SVLFFS G VY + +++ Sbjct: 518 YIKRMPVNTFEAQSRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 PIGS +RG ++ +L + + E+IT+I+P E + Y+V TK GN+++ L F Sbjct: 578 PIGSRTSRGTPIVQMLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTALEAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724 I +G IA+ L+ D++ V E+ I++ ++ G + F +R GR + GV Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L GD+++ M I+ A + + + + E S ++ + Sbjct: 694 KSMKLKPGDELVGMDILPAAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNS 753 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 754 -----------TGPWVLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATL 802 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN +++I++ +++G +IR VN I + SR+ GV + +D+ + V + + D Sbjct: 803 RIVNSDEEIMMATNRGIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGVAIVPP-DTGD 861 Query: 905 EAESTE 910 E E Sbjct: 862 TGELEE 867 >gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162] Length = 851 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 376/912 (41%), Positives = 558/912 (61%), Gaps = 95/912 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNIFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF+PN+D + +EPVVL ARYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN D ++ L+EI++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+PY VNKA ++EKIAELVREK+I I DL D S Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFTLIGILK 359 R+G R+ I+L++ A+A+V+LNQLY++T LQ F V M+ L +P+ TL +LK Sbjct: 302 SREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLK 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++A +E+VV RRTKY LNKA++RAH+L GL A+ N+DEV+RIIR S + + A++ELM Sbjct: 362 YYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMD 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R L++VQ +AI+++RL LTGL R+ + E Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ R+ LL +I++E+L++ ++ RRT I D+ ED I RE+ V Sbjct: 456 LMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAYDISMEDMIPRENTV 515 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++ LGY+KR+ + +R+Q RGG+G G+ D+D++ +L + +TH V+FF++ G VY Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVY 575 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P ARG A+IN+L L GERIT ++P + E Y++ AT+ G V++ Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFE---EGHYLMMATRKGLVKK 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + D+ + + G A+ L DE++ V+ + D++L TK GQC+RF + +R GR Sbjct: 633 TPIQDYANVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRS-TGR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L GD+V++M Sbjct: 692 VSMGVRGINLLDGDEVVAM----------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L + ++L VSE G GKRTS +F NR GKG++ +++ + G Sbjct: 711 ------------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITE--KTG 756 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ VN+ ++I++++ +G +IR+ ++I I R T GV + + + V S ++RE Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVRE 816 Query: 900 SEIVD-EAESTE 910 + E ES+E Sbjct: 817 KDEDKAEKESSE 828 >gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367] gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367] gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis] Length = 844 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 358/905 (39%), Positives = 548/905 (60%), Gaps = 85/905 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D++ +T V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 2 ADQDYLGRVTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + K AR+ G+V+GKYHPHG++A+Y+++ RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPFRKSARMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K A +L D+ KDT+DF+ NYDGS +EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+ ++ NPD L LME + GPDFPTG +++G+ I+ AY TG+G+ Sbjct: 182 TNIPPHNLTEVISALHILMKNPDASLADLMEALPGPDFPTGGIVMGKAAIRRAYETGKGT 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R IE+ +++IV TEIPY VNKA ++E+IAEL R+KRI I D+ DE+DR G Sbjct: 242 ITLRAKVDIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ F +NM+A+ P+ L IL+ ++ F+ E Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT++ L KA RAH+L GL IA+ ++DE++ IIR S + A++EL+ R Sbjct: 362 VIRRRTEFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q++AIL++RL RLTGL R+ + E + IK+ Sbjct: 415 -------------------FSLSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 +IL+S+ R II +ELL ++++ RRT ++ +L +EDED I ED+VV+++H G Sbjct: 456 KEILASKERQQAIIYEELLEIQNKFGDDRRTELMVGEVLSLEDEDLIAEEDVVVSLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S ++AQ RGGKG G+ + D+DF+ L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPTSEFKAQNRGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L +N E + ++ + +N + F T G V+R + +F Sbjct: 576 PEYGRTAKGIPVINLLGINNNEHVQAVINV-ANPGENDNRDLFFTTVQGTVKRTPVDEFA 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE++ V+ + ++++ T LG V F + +R GR++ GVRG Sbjct: 635 NIRSNGLKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFAATDVRSM-GRSATGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D VI +++ Sbjct: 694 IRLREHDYVIGASVLKP------------------------------------------- 710 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + + +SEKG+GK+T++ ++ I R GKGI+ +VS N G L + Sbjct: 711 ----------DSKVFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKN--GPLAGLTT 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDE 905 ++ ++ I+LV++KG +IR +++ RAT GV + A D V ++ ++ E E DE Sbjct: 759 LDGDEDIMLVTNKGVMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKEDETADE 818 Query: 906 AESTE 910 A + Sbjct: 819 APVVD 823 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 17/237 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR P+ + R G + ++++D + D+ I++ +++ + LG+ Sbjct: 620 TVQGTVKRTPVDEFANIRSNG--LKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFA 677 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G I R+ + V ++ G ++ Sbjct: 678 ATDVRSMGRSATGVRGI---------RLREHDYVIGASVLKPDSKVFVISEKGYGKQTAA 728 Query: 663 SDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ I G +K + + T + DI+L T G +RF S + G Sbjct: 729 AEYP-IKGRGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLVTNKGVMIRFSASDVSE-TG 786 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R ++GV I LA V +MA V D DE A + + Sbjct: 787 RATLGVHLIRLADDTAVATMAKVAKEDETADEAPVVDGETPATTDGPVVPESDDPTE 843 >gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] Length = 849 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + I D K I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+ Sbjct: 57 YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGE++DG +A+I+N DI + LM+ I GPDFPTG VI+G+ IK Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRGS IRG +E RE++V+T +PYQVNK+ + E+IA+LVREK+I I D+R Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G RV I+L+ G + I LY+ TS++S F N +A+ KP+ L L Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTN 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S P+ A++ L+ Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W + LI L++D LS+ Q AILELRL +LT LG ++I E+ L Sbjct: 417 KWKINKSLKLISLVEDKKEK----NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 IK I++S+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I +E +++ Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR LS + Q+RGGKG+SG+ RDED V V+THTSVLFFS+ G VYK Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K W++P GS ++GK+L NIL L + I++IMPFP++ES NL +VFAT G VR+N Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L DF IN +GKIA+KLD D+I+ VE C + D++L+TK G+C+RF +R+F GR+ Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S G++GI L+ D+++S++I D Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 K +F+L+++E G+GK+T + ++R++NR GKGI S N G+ Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + + FPV + D +++ ++KG +IRV V EIR A R T+GV I + DE+VVS +I ++ Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 19/259 (7%) Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + F R+ I A+ +E + +E+ I+ T G R +S+++ Sbjct: 498 KTIKEKFAVPRRTKIIDAILNYDIEETIQ-----KESVIITVTLQGYIKRGALSSVKQQK 552 Query: 718 GRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 R G GI+ D V+ ++++ H + + + A + T + SL Sbjct: 553 -RGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLF 611 Query: 777 N-----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 N + +I +E K I+ + KG ++ S DF N +GK A Sbjct: 612 NILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIK 669 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890 + + +V V D+ ++L + G IR ++RI R++KG+ + ++ Sbjct: 670 L---DPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDE 726 Query: 891 VVSVERIRESEIVDEAEST 909 +VS+ + +I + +S Sbjct: 727 IVSLSITNKEKIKKDTKSD 745 >gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] Length = 823 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 363/904 (40%), Positives = 550/904 (60%), Gaps = 87/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++Q +L ++EKG+GKRT ++ + R GKGI+ +++++ N G L + V+ Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818 Query: 907 ESTE 910 ++TE Sbjct: 819 QATE 822 >gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102] gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102] Length = 871 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 373/905 (41%), Positives = 544/905 (60%), Gaps = 46/905 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I + + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYT Sbjct: 64 KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++D VAVI NP+I LM+ + GPDFPTGA ILG + I+ AY TGRGSI + Sbjct: 184 PPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV++IE DRE I++TE+PYQ NKAA++EKIAE+V EKR+ IAD+RDESDR Sbjct: 244 RGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR A V+LN LY+ T LQ+ F NM+AL +P+ TL L F+ FR Sbjct: 304 GMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA++ LD ++ +IR +P+ TA+ EL+ Sbjct: 364 ESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELIT------- 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 T LSEVQ AIL+++L RLT L D IR E + L +I + Sbjct: 417 -------------------TYGLSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II+ E+ +K TPRRT I+ G +++D D I E ++ V+ G Sbjct: 458 LQDILARRERVLEIIETEVAQLKTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G++ ++D+D + H S+LFFS G VY + +++ Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S +RG ++ +L + + E+IT+I+P E + Y+V TK GN+++ +L+ F Sbjct: 578 PASSRTSRGTPIVQMLPIPKEEKITSIVPVDEFS---SEEYLVMLTKGGNIKKTELAAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L+ D++ V E+ +++ ++ G + F + +R + R + GV Sbjct: 635 HIRANGLIAISLEEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLS-RATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L D+++ M I+ A + + + + + E ++ E Sbjct: 694 KAMKLKNKDELVGMDILPAAILETLDIVT-------EAETEDIEAIETIETEDIEITETT 746 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 747 EESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATL 806 Query: 845 FPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V ND+D+I++V+++G +IR VN I I SR+ GV + +D+ + V + Sbjct: 807 RIVNNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDAAD 866 Query: 904 -DEAE 907 +EAE Sbjct: 867 AEEAE 871 >gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679] gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679] Length = 823 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] Length = 937 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 375/918 (40%), Positives = 556/918 (60%), Gaps = 51/918 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++ ++NK Y Sbjct: 2 STDSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+YDA+ R+AQ +S+R +LI+GQGNFGSVD DP AA RYT Sbjct: 62 KKSARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK H +L DL KDTVD+ PNYDGS Q P V+ AR PN+LVNG GIAVGMATN+ Sbjct: 122 EVRMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMA 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C+A D+P I + LM+ I GPDFPTG +I GR+GI +AY TG+G + +R Sbjct: 182 PHNLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIYGRSGIVDAYRTGKGRLHLR 241 Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 G HIE S +RE+IV TEIPYQ NKA ++EKIAELVR+K++ I+++RDESD+ Sbjct: 242 GKYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKD 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+ Sbjct: 302 GMRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQPKIMTLRDLIAAFVRHRQ 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KA+ R H+L GL IA+AN+D ++ I+ S N + AR L+ +W + Sbjct: 362 EVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGG 421 Query: 427 IKDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471 + +++ S + LS Q AIL+++L RLTGL +D Sbjct: 422 VIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQD 481 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ E + I + IL + +L+ +IK EL+ ++++ R+T+IV+ D D Sbjct: 482 KLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFSRAD 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I + +V+TVS GY K P+S Y AQ+RGGKG+S M+ +D + + + STH +V+ Sbjct: 542 LISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNNVMI 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F+ G V+ +V+ +PI S +RG+ ++N+++L+ E++T I+P ED +N YV FA Sbjct: 602 FTDRGRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYVFFA 661 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V+R +LS F + +G A++L+ D ++ V + DI+L + G+ +RF S Sbjct: 662 TASGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRFNES 721 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 IR GR + GVRG+ + + E+ Sbjct: 722 KIRAM-GRTAKGVRGMR-------------------------VTLLANQGIEDEDTELED 755 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + D+ +S + ++ IL E+GFGKRT DF + R GKGI A Sbjct: 756 DSQDDQDNDSVVAVSRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIK 815 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N G LV V D D I+L+SD GTL+R PV +I R +GV + ++DE + Sbjct: 816 TTARN--GELVQALAVTDADDIVLISDAGTLVRTPVGQIAQTGRNAQGVTLIRISQDESL 873 Query: 892 VSVERIR---ESEIVDEA 906 VS+ + E E+ +++ Sbjct: 874 VSIALVEGGSEDELDEDS 891 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 98/273 (35%), Gaps = 25/273 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV LS ++ R G V + D D + + I ++ F Sbjct: 652 QNDNSYVFFATASGMVKRVQLSQFKNLRANG--LRAVELNDGDNLIGVAITDGDQDIMLF 709 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG-------------------ERITTI 633 S+ G + ++ A+G + + L + + + Sbjct: 710 SNEGKAIRFNESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDSQDDQDNDSVVAV 769 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690 + ++ A + G +R +SDF R GK + + E++ Sbjct: 770 SRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQALAV 829 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 T +DI+L + G VR P+ I GRN+ GV I +++ + ++S+A+V D + Sbjct: 830 TDADDIVLISDAGTLVRTPVGQI-AQTGRNAQGVTLIRISQDESLVSIALVEGGSEDELD 888 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 ++ D L++ E Sbjct: 889 EDSLEAALADNIAQDGTDLRNSADLQDIELSEA 921 >gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88] gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88] Length = 813 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 362/899 (40%), Positives = 558/899 (62%), Gaps = 86/899 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 1 MNYMNNNEGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 K Y KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD Sbjct: 61 SPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +L D+ K+TVDF PN+DGS +EP V+ +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV+DG +I++PD + LM I+GPDFPT +I+G++GI++AY TGR Sbjct: 181 MATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G +++R + IE+ R +I+VTE+PYQVNKA ++E +AELV++KRI I+D+RDESDR Sbjct: 241 GKVIMRAKAEIEEEK-GRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+V+E+KR ++ +V+LNQLY++T +Q F V M+AL +P+ L IL ++ F+ Sbjct: 300 EGMRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQ 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +E++ RRTK+ L+KA RAH+L GL IA+ ++DEV+ +IR S N + AR LM + Sbjct: 360 KEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+E Q +AIL++RL RLTGL RD I E N L IK Sbjct: 415 ---------------------FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIK 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL++ +L IIK+EL +K++ R+T I + ++ ED I E++VVT+++ Sbjct: 454 YLRDILNNEDLVLKIIKEELHEIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNS 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ Y +Q+RGGKG + +++DFV +FI STH+ +LFF+++G VYK K + Sbjct: 514 GYIKRISSDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYE 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L ++ E + ++ +D Y++ TK G +++ L+ F Sbjct: 574 IPEAGRTAKGTNIVNLLPVDANEHVREVIALKKDL---EEGYLIIGTKQGLIKKTSLNQF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G IA+ L DE+L V+ + +I++ T+ G +RF +R GRNS GV+ Sbjct: 631 KNIRKNGIIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPM-GRNSTGVK 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ISL K D +SM IV+ + Sbjct: 690 AISLRKDDVAVSMDIVVEDE---------------------------------------- 709 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++LTV+E GFGKRT + ++ + NR+GKG+ V+ ++ G +V+ Sbjct: 710 -------------YVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVT--DKTGKIVSAR 754 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D+D+++L++ T IR+ V+++ I +R+ GV + T ++E+++++ +I E + Sbjct: 755 VAKDSDELMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDEDSE 813 >gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636] gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636] Length = 823 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 360/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + ++ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTIS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] Length = 822 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 374/905 (41%), Positives = 557/905 (61%), Gaps = 90/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE VD V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIYKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S E A+ ELM + Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPDRVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ D ++ Y+ F T+ G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSERSDDAYLFFTTRAGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TKLG VRF S +R + R++ GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V+ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKN--GPLAGLLTVTGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905 + +++++DKG +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGAENE 817 Query: 906 AESTE 910 ES E Sbjct: 818 IESEE 822 >gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] Length = 823 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4] gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4] Length = 846 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 71/903 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + + V+I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R L++GQGNFGS+DGDPPAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYD S EP VL R PN+L NG GIAVGMATN Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+ C+A+ID+P +D+ +M I GPDFPT ++ G GI+ AY TGRG I Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSRGIQEAYLTGRGRIF 241 Query: 250 IRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H+E R+ I+VTE+PY VNKA +LEKI ELV+EK+I I LRDESD++G Sbjct: 242 LRARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+EL+R +V+LN LY +T LQ++F +NMVAL +P+ L L+AF+ R+EV Sbjct: 302 RMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQPQVLNLKLALEAFLRHRQEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+RAHVL GLAIA+ N+D V+ +I+ S +P AR L+ RSW + Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 D++ S +G LS Q +AIL++RL RLTGL + I +E + Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+IL++ RL+ +I++EL+ ++ + RRT I +D+ ED I E++VV Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQYGELRRTEIQYNHVDLRLEDLIQEENVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY Sbjct: 542 TLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KV+ LP G+ ARGK ++N+L L +GERI T Sbjct: 602 KKVYELPQGTRTARGKPIVNLLPLEEGERINT---------------------------- 633 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719 +L + + + + T G + ++ R Sbjct: 634 -----------------------VLPIREFEEGKYVFMVTASGVVKKTSLAVFSRPRP-- 668 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G+ + L +GDQ++ + E + + R + + Sbjct: 669 --SGIIALELREGDQLVGADLTD----GEQEIMLFSSGGKVIRFSEQKVRPMGRTARGVK 722 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +E + + ILT +E G+GKRT+ ++R+ R G+GI + + N G Sbjct: 723 GMELPPEHRVIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQGIISIQTTPRN--G 780 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +V V + D+I+L++++GTLIR PV +I + R T+GV + + + ER+V VERI E Sbjct: 781 QVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEGERLVGVERIVE 840 Query: 900 SEI 902 Sbjct: 841 DGE 843 >gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20] gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 886 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 389/891 (43%), Positives = 549/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] Length = 824 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 373/883 (42%), Positives = 545/883 (61%), Gaps = 85/883 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ K Y Sbjct: 16 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 76 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYDGS +EP+VL A++P +LVNG GIAVGMATNIP Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L +++ +E V+ RR Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 375 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ Sbjct: 376 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 422 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 469 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 470 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 529 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Sbjct: 530 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 589 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N+L++ ERIT ++ E + + ++ T+ G V++ L++F I +SG Sbjct: 590 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 646 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+L+ G Sbjct: 647 LRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFPEDGVRSM-GRIARGVRGITLSDG 705 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M I+ Sbjct: 706 DEVVAMDILKSG------------------------------------------------ 717 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +LTV+E G+GKRT++ ++R R GKG+ V++ + G++V + V + + Sbjct: 718 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGSVVGIRVVRGSQE 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++L++ +G +IR V+EI + SR T+GV + + A+++RV S+ Sbjct: 771 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 813 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 9/222 (4%) Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 E+ + +E+ ++ T R P+ R R VGV+G+ + D V + Sbjct: 500 DASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDIVSDLL 558 Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 I + ++ + I+ Sbjct: 559 ITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVREFKP 618 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++F+ + KG K+T +F +N G+RA ++ + L+ V + ++I+L Sbjct: 619 DRFLFLGTRKGVVKKTPLAEF--ANIRKSGLRAVNLDE---DDELIGVKFTDGENRIMLG 673 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + G I P + +R R +GV + + + VV+++ ++ Sbjct: 674 TRHGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDILK 715 >gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303] gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303] Length = 830 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 365/901 (40%), Positives = 553/901 (61%), Gaps = 83/901 (9%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + I + + + I+ V I +EM+ SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 12 SGEIDVQETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMK 71 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G+ ++K Y K AR+ G+V+GK+HPHG+ A+YD+L RM Q++S+R L++GQGNFGS+D Sbjct: 72 EAGITYDKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSID 131 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD AA RYTE R++K + +L D+ K+TV F+PNYDG+ EP VL A+ PN++VNG G Sbjct: 132 GDSAAAMRYTEVRMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTG 191 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNL EV DG + +IDNPD+ + L I+GPDFPT ILG GIK+AY Sbjct: 192 IAVGMATNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGTEGIKSAY 251 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRG I IR V+ IE+ D+ +IVV+E+PYQVNKA ++E IA LVR+K+I I+DLRD Sbjct: 252 ETGRGRIKIRSVADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRD 311 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR+G R+VIEL R + +VILNQLY++T LQ + + +AL P+ L +L+ + Sbjct: 312 ESDREGIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVDGVPKVLNLYELLQIY 371 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + R +V+ +R++Y L KA +RAH+L GL I + NLDEV+ IR S A+ L+++ Sbjct: 372 LNHRMDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEK- 430 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 L E Q +AIL++RL LT + +D I +E N L Sbjct: 431 -------------------------FQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELV 465 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + +I++S SR IIK EL +K+ RRT I ++ +ED I ED+++T Sbjct: 466 EKIADLKEIIASDSRKYNIIKDELTELKENYADERRTDIQSSDEELSEEDLIPEEDVLIT 525 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +++ GY+KR+P++ Y Q RGG+G +G+ ++D+DFV D+F+ ST +L F++ G V + Sbjct: 526 ITNSGYIKRLPVTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCK 585 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P GS Q+RGKAL+N+ L E +++++ E ++ ++ ATK+G V++ Sbjct: 586 KVYEIPQGSKQSRGKALVNLFELENDEAVSSMITVKEFS---DDWNLLMATKYGTVKKTP 642 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS F +SG IA+ L+ DE+++V +NDI+L + G+ +RF + +R GR + Sbjct: 643 LSSFKTRKKSGLIAINLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPM-GRAA 701 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L D++ISM + + Sbjct: 702 QGVRGIRLNPDDRIISMDTISDDENAK--------------------------------- 728 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +LT+++ G+GKRT ++R NR G+G+ ++ N G + Sbjct: 729 ------------------LLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRN--GPV 768 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V V D+D I++ S +G +IR+PV +IR+ R T+GV I + ++++V+ V RI++ + Sbjct: 769 VNVKTVRDDDDIVVTSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDD 828 Query: 902 I 902 Sbjct: 829 D 829 >gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] Length = 823 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 541/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] Length = 978 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 384/927 (41%), Positives = 557/927 (60%), Gaps = 41/927 (4%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A++ Sbjct: 52 SINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSAKV 111 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G VMG YHPHG++AIYD + R+AQ +SLR LI+GQGNFGSVDGDPPAA RYTE R+ + Sbjct: 112 VGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRMTR 171 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +L D+ DTVDF PNYD S EP VL AR PN++VNG GIAVGMATNIP HNL E Sbjct: 172 LAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNLTE 231 Query: 198 VVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 V++ +A++ DL+ ++E ++GPDFPTG + GR + Y TGRG ++R Sbjct: 232 VLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLYGRGNLVQTYKTGRGRFMMRAK 291 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E+ +G R+ I+ TEIPYQVNK+ ++++IAELV EK + DI+D+RDESDR G R+VIE Sbjct: 292 CGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIVIE 351 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA +++LNQLY++TS+Q FS+ +A++ +P+ L + AF+ R +VV RRT Sbjct: 352 LKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQPKELPLNEAIWAFIEHRIDVVRRRT 411 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS------------ 421 +LLNKAR+R HVL+G IA+ +LD+V+RIIR S + AR L Sbjct: 412 AFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGTEL 471 Query: 422 -----WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 A DL + + + GT+ LS Q AILEL+L RLT L D++ NE Sbjct: 472 QGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDELLNE 531 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L ++ I E IL+S +L +I +EL ++D+ RRT I++ ++ ED I E Sbjct: 532 LRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDARRTTILDESTELTLEDLIADE 591 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + VTVS+ GY+KR P+S YR QRRGG GR G+ R+EDFV L I STH +L F++ G Sbjct: 592 QVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTHAYLLCFTNSG 651 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY KV+ +P +GKA+ +++ L GE++ TI+P + YV+FAT++G Sbjct: 652 RVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPVKDLA--EEGKYVLFATRNGT 709 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L DF + G IA+ +D DE+++ E I L T G +RF +R Sbjct: 710 VKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQDLRPM 769 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + G RGI+L K D VI A+ +A +R+ ++ + E S Sbjct: 770 -GRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAGESAA 828 Query: 777 ND---------------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 S ++ ++L L IL+VS+ G+GKRT +R+ + Sbjct: 829 AQPLELAEPGELGAPVISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSYRLQS 888 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R GKG+ + +IG + ++ V+D +++++S G +IR+ +R A RAT GV Sbjct: 889 RGGKGVINMKSTP--KIGKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRATMGVK 946 Query: 882 IFSTAKDERVVSVERIRESEIVDEAES 908 + D++V + I + E+ Sbjct: 947 LLDLDTDDKVAAAMVIPPEDPKSPTEN 973 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 79/233 (33%), Gaps = 15/233 (6%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF-----IVSTHTSVL 590 E ++ +H G R R R G G+ ++ D+V + Sbjct: 746 EQVIFLATHDGMAIRFNEQDLRPMGRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLE 805 Query: 591 FFSSLGFVYKEKVW-----RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 + G + + P + + + +++ Sbjct: 806 LAAKTGLTAQVEAVLDEAGESAAAQPLELAEPGELGAPVISEA-AAAKLQQLDEKLGLTP 864 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKL 702 ++ + +G +R + + +R GK + + S +I V ++++ ++ Sbjct: 865 CLILSVSDNGYGKRTDVDSYRLQSRGGKGVINMKSTPKIGKVASIQLVDDTTEMMVISQF 924 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 G+ +R ++R AGR ++GV+ + L D+V + ++ D + Sbjct: 925 GKIIRIDTKSVRA-AGRATMGVKLLDLDTDDKVAAAMVIPPEDPKSPTENGAL 976 >gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] Length = 828 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 369/898 (41%), Positives = 537/898 (59%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + Sbjct: 2 QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG++A+YD+L R+ QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVVDG +AVI+NP+I++ +M+ + PDFPTG +I G G++ AY TGRG +VIR Sbjct: 182 PQNLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+ Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L ++ +V R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDGVPRVLNLKEMMHYYVKHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L A RAH+L GL I + NLDEV+ IR SP+ TA+ LM+R Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTG+ R I E + I I Sbjct: 412 ----------------FGLSEIQSKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LASPQKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G + +DF+ +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L E+I + E + Y+V AT +G V++ L DF R Sbjct: 576 RAARGRSLANIMELRPTEQIKAYINIRNFE---DPGYIVMATTNGIVKKTPLDDFSNPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE+L ++ I+L VRFP + IR GR ++GV+GI+L Sbjct: 633 TGIAAITIEEGDELLDARLTDGDHQIILAKSSAYAVRFPENEIRSM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G++ ISM D Sbjct: 692 EGEKCISMVTTKRTDTA------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+ Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLIDVNDD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D +I+++ G + R V+++R+ R T GV + +++ ++ R+ +S+ +++S Sbjct: 758 DDLIIITTNGIVNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSDEEVDSDS 815 >gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr. CH1] gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 817 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 365/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+L II++EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D + Y+ F T+ G V+R ++DF I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVEQD--HSQDSYLFFTTRLGVVKRTSVADFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ +V Sbjct: 693 DGDQVVGAGVVS------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + VN Sbjct: 705 -----DNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++++++ G +IR V I R+T GV + ++ ++V+ + + + + E Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 817 >gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath] gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath] Length = 860 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 387/904 (42%), Positives = 536/904 (59%), Gaps = 71/904 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGDPPAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVDF PNYD S +EP VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+A+I+NP+ + LM + GPDFPT +I G GI+ AY TGRG I +R Sbjct: 186 NLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGIINGAAGIREAYLTGRGRIYLRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E G R+ I+V E+PYQVNKA +LEKIAELV+E ++ I+ LRDESD+ G R+VIE Sbjct: 246 CQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGMRMVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG + +V+LN LY+ T +QS+F +NMVAL +P L ++ AF+ R EVV RRT Sbjct: 306 LRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGRPRLMNLRDLIAAFIDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAHVL GLA+A+AN+DEV+ +I+ SP+P A+ L+ R+W + +L++ Sbjct: 366 LHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVVTELLER 425 Query: 434 IDDSSYTIGSD---------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + + D G LS +Q +AIL+LRL RLTGL +D I E +L +I Sbjct: 426 ADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYRALLEQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL+ +RL+ +I+ EL++++++ PRRT I+ LD+ ED I EDMVVTVSH Sbjct: 486 ADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDMVVTVSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PLS YRAQRRGG+G+ ++ED++ L + +TH ++L FSS G VY KV+ Sbjct: 546 EGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+ S ARG+ +N+L L +GERI Sbjct: 606 ELPVASRTARGRPFVNLLPLEEGERINA-------------------------------- 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVG 723 + + DE I + T G + +S R G Sbjct: 634 ----------ILPIREFDEAHF---------IFMATASGTVKKVALSEFERPRP----SG 670 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 I L D+++ +AI + + + + + + Sbjct: 671 KIAIELRDDDRLVDVAITN----GEQDVMLFSSDGKVVCFHETDVRAMGRTAAGVRGMTL 726 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + E +L ++E G+GKRT +F R G+G+ A S N GA+V Sbjct: 727 QEGRKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARN--GAVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D D+I+L++D GTL+R V+EI + SR T+GV + E+VV ++RI Sbjct: 785 AALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEKVVGMDRIGSLPGG 844 Query: 904 DEAE 907 +E E Sbjct: 845 EEDE 848 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 16/222 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+V LS + R GK + +RD+D + D+ I + V+ FSS G V Sbjct: 650 TASGTVKKVALSEFERPRPSGKI--AIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFH 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A A + ++L +G ++ ++ E V+ T++G +R +L Sbjct: 708 ETDVRAMGRTA---AGVRGMTLQEGRKVIALIIASE-------GTVLNITENGYGKRTRL 757 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +F + R G+ + + + + E++I+L T G VR +S I V + R Sbjct: 758 EEFPRHRRGGQGVIAIQTSARNGAVVGAALVEDEDEIMLITDAGTLVRTRVSEISVLS-R 816 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 N+ GV I L G++V+ M + ++ + SA+ Sbjct: 817 NTQGVTVIRLNPGEKVVGMDRIGSLPGGEEDELDNGSGDSAE 858 >gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 807 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 362/889 (40%), Positives = 543/889 (61%), Gaps = 85/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ I+L+++KG +IR V+ + RAT GV + +VV++ + Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVV 807 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 10/212 (4%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ T G R S R R GV+G+ + D V ++ D + Sbjct: 507 VITLTNNGYIKRMANSEFRA-QRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGK 565 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + K + + +L S E + + +++ + KG KR Sbjct: 566 VYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKR 625 Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 T+ F SN G+ A + + LV V N N ++I+ + G + N +R Sbjct: 626 TAVTAF--SNIRSNGLIAISLKE---DDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVR 680 Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R GV +++ VV + E++ V Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEV 712 >gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36] gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36] Length = 826 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 369/899 (41%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPAVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R GR + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSM-GRIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] Length = 823 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W] gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II] Length = 873 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I+ Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 Query: 907 ESTE 910 + Sbjct: 818 SKPD 821 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++DED + ++ + S Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 V ++ G +R ++ + + + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I ++ GR ++GVR I + +V +MA V D D+ + S Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + +++ + +S+ + + + Sbjct: 830 SAAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864 >gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] Length = 823 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 887 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 389/891 (43%), Positives = 549/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 4 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 64 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 184 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 244 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 304 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 363 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 364 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 415 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 416 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 457 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 458 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 518 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 578 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 636 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 695 TLREGDEVVGLDVAHANSVDE--------------------------------------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 716 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 762 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812 >gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317] gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317] Length = 823 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ Sbjct: 694 LREEDYVVG--------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L + Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 >gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] Length = 832 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 386/901 (42%), Positives = 557/901 (61%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + + I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ NK Sbjct: 2 NQKAARVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R LI+G GNFGSVDGD AA R Sbjct: 62 PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGM+T+ Sbjct: 122 YTEARMSSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTS 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG V +I P+I LM II+GPDFPTG I+GR I AY TGRG + Sbjct: 182 IPPHNLGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE +R+QI+V E+P+QVNKA +++KIA LV++++I I+D+RDESDR G R Sbjct: 242 VRAKTRIEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ +V+LNQLY+++ LQ FS M+AL +P+ +L IL+ ++ +++V+ Sbjct: 302 IVIELKREATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTKY L+KA DRAH+L G IA+AN+DE+V +I+ + + +TAR LM Sbjct: 362 TRRTKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALM----------- 410 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q AIL +RL LTGL R+ I E + L +I Sbjct: 411 ---------------DDYELSEIQANAILRMRLQSLTGLERNKIDTEYDELQAKITRYRS 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +LL I+K+E+L +KD+ + RRT+I++ + D+E ED I E +V+T++H GY+K Sbjct: 456 ILADEDKLLNIVKKEILEIKDKYNDKRRTKIMDKVTDLEIEDLIEEEQIVITMTHQGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L +YR+QRRGGKG G+ ++EDFV ++F +TH LFFS+ G VY+ K +++P Sbjct: 516 RMALDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QARG A+IN+L L + ERIT ++P E + Y++ ATK+G +++ L + N Sbjct: 576 GRQARGTAIINLLELKEEERITAVIPVKEFP---EDAYLIMATKNGLIKKTSLDAYDT-N 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G I + L DE++ V ++ +I+L +K + + F S +R GRNS GVRGI L Sbjct: 632 YTGLIGINLRENDELIGVRIIDEDENIILVSKNAKAIHFNESDVRSV-GRNSYGVRGIRL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D VI M I Sbjct: 691 SEEDYVIDMGI------------------------------------------------- 701 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +L ++E G+GK+T ++RI NR GKGI ++++ N G L A V+ Sbjct: 702 ----DSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKN--GQLAAAKIVDA 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 N ++++++ +G +IRV EI R T GV I + +D++VVS+ RI E EIVDE E Sbjct: 756 NSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVDELEEL 815 Query: 910 E 910 + Sbjct: 816 D 816 >gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334] gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334] Length = 873 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 370/904 (40%), Positives = 546/904 (60%), Gaps = 86/904 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I+ Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 Query: 907 ESTE 910 + Sbjct: 818 SKPD 821 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++DED + ++ + S Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 V ++ G +R ++ + + + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I ++ GR ++GVR I + +V +MA V D D+ + S Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + +++ + +S+ + + + Sbjct: 830 SAAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864 >gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] Length = 835 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 351/898 (39%), Positives = 541/898 (60%), Gaps = 84/898 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y Sbjct: 2 SNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE Sbjct: 62 KSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPT Sbjct: 122 ARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPT 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R Sbjct: 182 HNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRA 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ +++I+V EIPY VNKA ++ +IA+L R K I I D+ DE+DR G R+VI Sbjct: 242 KVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E+VV RR Sbjct: 302 DVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L KA+ R H++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 362 TEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM-------------- 407 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 G LS+ Q +AIL++RL RLTGL R+ I E L I + DIL+ Sbjct: 408 ------------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILA 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R+ II EL+ ++ + RRT + + ++EDED I +D++VT++H GY+KR+ Sbjct: 456 HKERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ +++Q RGG+G G+ + ++DF+ L STH +LFF++ G VY K + +P Sbjct: 516 PVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L+++ E+I+ ++ + + ++ ++ F TK+G V+R + +F I + Sbjct: 576 SAQGIPIINLLNIDSQEKISAVINVSHETND-DDKFLFFTTKYGTVKRTPVPEFKNIRSN 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ + +++ T+ G + F + +R GR + GVRGI L Sbjct: 635 GLKAINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRD 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI A + Sbjct: 694 HDFVIGAAPLH------------------------------------------------- 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ +L +SE GFGK+T + ++ I R G G++ +V+K N G LV + V ++ Sbjct: 705 ----QDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDE 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 I+LV+D+G +IR + + R+ GV + +V ++ ++ + + D+A + Sbjct: 759 DIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDGDDAPAA 816 >gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] Length = 833 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 374/885 (42%), Positives = 541/885 (61%), Gaps = 86/885 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + +I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K Sbjct: 5 DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+ KYHPHG++++YDA+ RMAQD+S R L++G GNFGS+DGD AA RYTE Sbjct: 65 SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A ++ D+ K+T+DF+PN+DG EPVVL AR+P++LVNG GIAVGMATNIP H Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A ++NP+ID+ LME I+GPD PTGA+ILG GI+NAY TG GSI++R Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 I + G + I+VTEIPYQVN+ ++EKIAELV+EKR+ I DLR+ES+R+G R+VIE Sbjct: 245 CEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVIE 304 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L++ + V+LN L++ T LQ + +NM+AL +P+ L I+ A++ + EV+VRRT Sbjct: 305 LRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVRRT 364 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ LNKA DRAH+L G IA+ ++D ++ IIR S N E A L+ Sbjct: 365 QFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISE------------- 411 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 SE Q +AILE+RL RLTGL RD I +E +L I + DIL++ Sbjct: 412 -------------FSFSERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILAN 458 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVP 552 R+ GII+ EL V + RRT IV G EDED I E +++T+++ GY+KR P Sbjct: 459 EYRVHGIIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +S YR+Q RGG+G G+ D+D+V +L STH +LFF++ G VY++K + +P Sbjct: 519 ISTYRSQNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + Q E I+ I+P E N ++ FAT+ G V+R LS F I +G Sbjct: 579 AKGLPIVNIIEIAQDEEISAIIPVKEFN---ENEFLFFATRTGVVKRTTLSAFGNIRTNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V T NDI++ + G+ V F +R GR + GVRGI+L +G Sbjct: 636 LIALSLREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSM-GRTAAGVRGINLEEG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + + M IV Sbjct: 695 EVAVGMEIVTE------------------------------------------------- 705 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +Q IL VSEKGFGKRT ++R ++R GKG++ +++ N G+LVA+ V + Sbjct: 706 ----DQEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKN--GSLVAMKTVTGEED 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++V++KG +IR P+++I RAT+GV + D+ V SV + Sbjct: 760 LLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804 >gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1] gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1] Length = 802 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 380/889 (42%), Positives = 553/889 (62%), Gaps = 88/889 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +EKGI V+I D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MGV NK Y Sbjct: 2 KEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG++A+YD L RMAQD+S+R L++GQGNFGS+DGD AA RYT Sbjct: 62 KKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVDF PNYDGS +EPVVL R PN+L+NG GIAVGMATNIP Sbjct: 122 EVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D V +IDNP + ++ I+GPDFPT +I G+ I AY TG+G I +R Sbjct: 182 PHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E T+ +E +VVTE+PYQVNKA ++EKIA L R+K+I I DLRDESDR G R+V Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG +AD+I+NQLY++T ++ + +N+V + KP+ TL +L+ F+ R+ VV+R Sbjct: 302 IELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+LL KA DR H+L GL AV N+DEVV +I+ S N A+ +LM R Sbjct: 362 RTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q +AIL++RL RLTGL + +RNE I+ IL Sbjct: 411 ---------------FELSDKQAQAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +++S L+GIIK+EL+ +K++ RRT+IV ++ ED I +++VVT+S+ G++KR Sbjct: 456 NNKSVLMGIIKEELIDIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +++Q+RGGKG++G EDF+ D+ + + H++++FF++ G ++ KV+ LP + Sbjct: 516 PLSNFKSQKRGGKGKTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELAR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GK + N++SL++ E++ ++ E + + Y+ TK G V++ L F S Sbjct: 576 DAKGKYIANLISLDKDEKVAAMISTKEFDR---DRYIFMCTKEGIVKKTSLDAFSSGR-S 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+KL DEI+ ++ + I ++T+ G+C++F S +R GRN+ GV+GI+L K Sbjct: 632 GIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNM-GRNATGVKGITLTK 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM V Sbjct: 691 DDKVVSMEAVK------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + ILTV+ KGFGK + D+RI +R GKGI+ + V++ G +V V D Sbjct: 702 ----GDPLILTVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTER--TGEIVGARQVKLED 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++L+S +IR+ V++I I R T+GV + D+ ++S + IRE Sbjct: 756 DVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGL--DDEIISFDVIRED 802 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 58/190 (30%) Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 D + + + + + E ++L ++ ++T+S +GF KRT +F+ R GKG Sbjct: 471 DIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKG- 529 Query: 828 RATDVSKIN-EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK-------- 878 N + + + ++ ++ ++KG + + V E+ +R K Sbjct: 530 ---KTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLI 586 Query: 879 ---------------------------------------------GVVIFSTAKDERVVS 893 G++ + +V Sbjct: 587 SLDKDEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIAIKLRDGDEIVD 646 Query: 894 VERIRESEIV 903 I +++ + Sbjct: 647 ASLISKNDSI 656 >gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] Length = 929 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 388/902 (43%), Positives = 554/902 (61%), Gaps = 86/902 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E E + G+T++ I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + Sbjct: 60 ETEDEGPEPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKE 119 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ +K Y K AR+ G+V+GKYHPHG+AA+YD++ RM QD+SLR LI+GQGNFGS+DG Sbjct: 120 SGITHDKPYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDG 179 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ + A +L D+ K+TV FRPNYDGS +EP VL A+ PN+L+NG GI Sbjct: 180 DEAAAMRYTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGI 239 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HN+ EV+DG + +IDNP+ + LM +++GPDFPTGA ILG GI++AY Sbjct: 240 AVGMATNMAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAYT 299 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + IR V+ I++ DREQI+VTE+PYQVNKA M+E IA+LVREK I I+DLRDE Sbjct: 300 TGRGPVKIRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDE 359 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR+G RVVIEL +G +A V+LNQLY++T +++ F V +AL KP+ L +L+ ++ Sbjct: 360 SDREGIRVVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIYL 419 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +R E+V +RT Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + AR+ LM Sbjct: 420 EYRMEIVQKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLM---- 475 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L EVQ +AIL++RL RLTGL I EL +L Sbjct: 476 ----------------------DNFTLDEVQAKAILDMRLQRLTGLETKKILEELENLIK 513 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E IL S II+ ELL +K++ RRT+IV ++ DED I D+VVT+ Sbjct: 514 LIAELKKILESDELKYEIIRTELLGLKEKYGDVRRTKIVHYTEEVTDEDLIPEADVVVTI 573 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 ++ GY+KR+PL Y QRRGG+G G+ M++EDFV +LFI STH +LFF++ G +Y +K Sbjct: 574 TNSGYIKRIPLDTYSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQK 633 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P GS Q+RGKA++N+L L +GE + ++P E + Y++ AT+ G ++ L Sbjct: 634 VYEIPEGSRQSRGKAIVNLLELREGEMVNAMIPVKEFA---EDRYLLMATRAGTTKKTPL 690 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F ++G IA+ LD DE++ V + ++L+ +K G+ +RF +R GR + Sbjct: 691 SEFRNPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPM-GRTAR 749 Query: 723 GVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L D+V+SM +V Sbjct: 750 GVRGMILDGPEDEVVSMDLVDETTT----------------------------------- 774 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L+V+E GFGKRT + + R GKG+ + N G + Sbjct: 775 ------------------LLSVTENGFGKRTEYSQYPMHRRGGKGVITIVTNLRN--GFV 814 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V ++D++++ S +G +IRVP +I I R T+GV I + ++VV + RI+ + Sbjct: 815 ANVKSVAEDDELMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKSGDKVVGMARIKAED 874 Query: 902 IV 903 Sbjct: 875 ED 876 >gi|153007330|ref|YP_001381655.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5] gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5] Length = 891 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 392/907 (43%), Positives = 545/907 (60%), Gaps = 102/907 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA + Sbjct: 27 QVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTE RL++ Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLER 146 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A FLL D+ K+TVD+ PN+D S EP+VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 147 LADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +I+NP + + LM I GPDFPT +I GR GI+ AY GRG+I +R + IE Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASIE 266 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IA+LVREKR+ I+DLRDES R+G RVVIELKR Sbjct: 267 VHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELKR 326 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q+ F V ++A++G +P L +L+ FVA R +VV RRT++ Sbjct: 327 DAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRFE 386 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+GL IA+ +LDE++ +IR +P+ + AR L+ R Sbjct: 387 LRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITR---------------- 430 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKIILRLKEILASEKV 480 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I+ D ED I E+MVVTVSH GYVKR P+S+Y Sbjct: 481 LMEVIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLY 540 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGG+G++G RDEDF+ +F+ STH+ +L FS G VY KV +P ARGK Sbjct: 541 RAQRRGGRGKTGAATRDEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGK 600 Query: 617 ALINILSLNQGERITTIMPFPEDESS-------------------------WNNLYVVFA 651 ++N++ L+QGE++ I+P YV A Sbjct: 601 PIVNLVQLSQGEKVAAILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMA 660 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T+ G +++ +L F + +G IA+ ++ DE+++ ++ +LL+T G +RF S Sbjct: 661 TRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEES 720 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GV+GI+L GD V+S + A + Sbjct: 721 DVRAM-GRTAYGVKGITLEPGDAVVSAETIPAAPPQGEPA-------------------- 759 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ILTV+ G+GKRT ++R+ +R GKGI Sbjct: 760 --------------------------PTILTVTRNGYGKRTELAEYRVQSRGGKGIITIK 793 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDER 890 ++ N G +VA V+D ++++L+++ G LIR+P I + R T+GV + + K+E Sbjct: 794 TTERN--GPVVAAALVSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEEE 851 Query: 891 VVSVERI 897 VV V R+ Sbjct: 852 VVGVARV 858 >gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK150] Length = 826 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 366/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 873 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I+ Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 Query: 907 ESTE 910 + Sbjct: 818 SKPD 821 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++DED + ++ + S Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 V ++ G +R ++ + + + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I ++ GR ++GVR I + +V +MA V D D+ + S Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +++ + +S+ + + + Sbjct: 830 SAEPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864 >gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 826 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 377/908 (41%), Positives = 547/908 (60%), Gaps = 106/908 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V+I +EM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M + G+ KKY KC Sbjct: 3 NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEV+ KYHPHG+ A+YDAL R+AQD+++R LI+GQGNFGS+DGDPPAA RYTE R Sbjct: 63 AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LL D+ K+TV F PN+D + QEP+VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+VD + +++NP I ++ L+E ++GPDFPTG I G GI++ Y TGRG I IR Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRAKV 242 Query: 255 HIE------------------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IE + +E+I++TEIPYQVNKA ++EKIAELVREK+I I Sbjct: 243 KIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEGI 302 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 ++RDES+R+G RVV+ELK+G +V+LN LY++T +++ F ++A+ +P L Sbjct: 303 TEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNLKE 362 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 L F+ R++VV++RT + L KA +AH+L+GL IAV NLDEV+ IIR S NPE A+ + Sbjct: 363 ALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAKMK 422 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM R L+E+Q +AIL++RL RLTGL R+ I + Sbjct: 423 LMNR--------------------------FPLTEIQAQAILDMRLQRLTGLEREKIIQD 456 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 ++ EI+ IL S + IIK EL+ +K + R+T IV ++ ED I +E Sbjct: 457 YETILKEIERLKAILESEELVRNIIKDELIEIKQKYGDERKTEIVTETKEINIEDLITQE 516 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMV+T++HLGY+KR LS YR+Q+RGGKG + + +D++ + I STH ++FFS+ G Sbjct: 517 DMVITLTHLGYIKRTSLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFG 576 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY KV+++P ++GKA++N+L L +GE+ITT + + Y++ TK G Sbjct: 577 RVYCLKVYQIPEAGRVSKGKAIVNLLPLQEGEKITTALVCKD----IEEGYLMMFTKKGF 632 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F I + G IA+ L+ DE++SV T N +++ TK+G VRF +R Sbjct: 633 VKKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPM 692 Query: 717 AGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV GI ++ D+V+S +V Sbjct: 693 -GRTARGVIGIRFSEPEDEVVSADVVSEG------------------------------- 720 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 F+LT++EKG GK+T ++R+ +R G G++ +S Sbjct: 721 ----------------------SFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSL- 757 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G +V+ V ++D+II+ S +IR+ V++IR RAT GV + + D+ VVS+ Sbjct: 758 -KTGNVVSSLQVKEDDEIIICSSS-KMIRLKVSQIRPQGRATTGVRLIDLSADDTVVSMG 815 Query: 896 RIRESEIV 903 RI E E Sbjct: 816 RILEGEDD 823 >gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang] gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang] Length = 873 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I+ Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 Query: 907 ESTE 910 + Sbjct: 818 SKPD 821 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++DED + ++ + S Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 V ++ G +R ++ + + + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I ++ GR ++GVR I + +V +MA V D D+ + S Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDA 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + +++ + +S+ + + + Sbjct: 830 SDAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864 >gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5] gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5] Length = 833 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 368/907 (40%), Positives = 558/907 (61%), Gaps = 90/907 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNVFDKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +ID N D ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R +++IE + + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +L+ ++ Sbjct: 302 NREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLRLYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ ++DEV++IIR S N + A+ EL+ R Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIAR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L++VQ +AI+++RL LTGL R+ + +E L + Sbjct: 419 -----------------------FDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LL +I++E+L + D+ RRT I D+ ED I RE++V+T++ Sbjct: 456 IGELKAILADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ DED++ +LFI STH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A+INIL L E+IT ++P E E + ++ AT+ G V++ ++ Sbjct: 576 YEIPEASRTARGTAIINILQLMPDEKITAMIPIKEYE---DGKFLFMATEKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L D ++ V+ E DI+L TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRA-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D+VI+M Sbjct: 692 VRGMNLSDRDEVIAM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ + +L VS+KG GKRT+ +F NR GKG++ +++ + G +V Sbjct: 707 --------QMSTQGSDLLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + VN++ +I++++ +G +IR+ ++I + R T GV + + A+ + V SV ++R++ Sbjct: 757 MKAVNEDSEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASVAKVRKASAE 816 Query: 904 DEAESTE 910 + E E Sbjct: 817 IDGEQVE 823 >gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 897 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 391/890 (43%), Positives = 559/890 (62%), Gaps = 84/890 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL DL KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++G +++ NPDI + LME I+GPDFPT +ILG++GI+ A+ TGRGSI Sbjct: 183 IPPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTE+PYQVNKA M+EKIAEL R+K+I I DLRDE+ R G Sbjct: 243 LRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL +P+ +L L ++ ++ V Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKDALVEYLEHQKVV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S N + A L ++ Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQ-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I+E Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +LL I++ EL+ V++ R+T I GL D+EDED I E +V+T+SH Y Sbjct: 457 SILADEEKLLQIVRDELIDVRERYGDERKTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L+ E I+T++ + ES + Y+VFAT+ G V+R+ LS+F Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLESEED--YLVFATQKGRVKRSALSNFSH 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ DE+++V E DIL+ T +RFP +A+R GR + GV+GI Sbjct: 635 INKNGKIAISFKQDDELIAVRLTDGETDILIGTSHASLIRFPETALRPL-GRTAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L + D+V+ + + D Sbjct: 694 TLREDDKVVGLDVTKAESDDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------ILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERN--GNVVCITSV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++V++ G +IR+ V +I RA +GV + +++ V +V ++ Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810 >gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 832 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 382/894 (42%), Positives = 548/894 (61%), Gaps = 88/894 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y Sbjct: 24 QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 83 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 84 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 143 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 144 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 203 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD +D LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 204 HNMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 263 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I + DLRDESDR G R+VI Sbjct: 264 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVI 323 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L+ ++ +E V+ RR Sbjct: 324 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITRR 383 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 384 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 429 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 430 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 477 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R ++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 478 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 537 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Q Sbjct: 538 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 597 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N+L++ ERIT ++ E + Y+ TKHG V++ LS+F I ++G Sbjct: 598 AKGTAIVNLLAVENDERITAVIQVKEFR---ADRYLFLGTKHGVVKKTPLSEFGNIRKNG 654 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+LA G Sbjct: 655 LRAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEDGVRSM-GRVARGVRGITLADG 713 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M ++ Sbjct: 714 DEVVAMDVLRS------------------------------------------------- 724 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V +N + Sbjct: 725 ----DSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 778 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903 ++L++ +G +IR V+EI + SR T+GV + + A+ +RV S+ RI +S Sbjct: 779 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDSAGE 832 >gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] Length = 850 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 356/907 (39%), Positives = 551/907 (60%), Gaps = 84/907 (9%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + + + IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ Sbjct: 8 NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 GV +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L+ G GNFGSVDGD Sbjct: 68 GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGD 127 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 AA RYTE RL K A +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG GIA Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNL EV+ ++DNPD LME++ GPDFPTG V++G++GI+ AY T Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYET 247 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGSI++R IE + +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DES Sbjct: 248 GRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 307 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+ P +L IL+ ++ Sbjct: 308 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLE 367 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + EV+ RRTKY L KA+ RAH+L GL IA+ ++DE+++IIR S E A+ +L+ Sbjct: 368 HQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---- 423 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AIL++RL RLTGL R+ I E N L + Sbjct: 424 ----------------------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 461 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542 I++ ILSSR R+ II +ELL ++ + RRT ++ G + +++ ++ E+ V+ + Sbjct: 462 IEDFKAILSSRDRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSL 521 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KR+P + ++AQ RGG+G G+ + D+DFV L STH +LFF+ G VY+ K Sbjct: 522 THNGYIKRLPTTEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMK 581 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P A+G ++N+L++N GE+I ++ + ++ ++F T +G V+R + Sbjct: 582 GYEIPEYGRSAKGIPIVNLLNINSGEKIEAVINVSDRKNDVQ-KDLLFVTLYGTVKRTPV 640 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF I +G IA+ L D++++ Q ++++ T LG + F S +R GR++ Sbjct: 641 SDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSAT 699 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L + D V+ ++ Sbjct: 700 GVRGIRLRENDYVVGADVL----------------------------------------- 718 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + +SEKGFGKRT + D+ I R GKG++ ++++ N G L Sbjct: 719 ------------NPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLS 764 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + V+ N+ I+L++DKG +IR + ++ R+T GV + +D +V ++ ++ + E Sbjct: 765 GLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQED 824 Query: 903 VDEAEST 909 ++++ Sbjct: 825 EASSDAS 831 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 V+ G VKR P+S + R G + +++ D + + I+ + +V+ + LG+ Sbjct: 629 VTLYGTVKRTPVSDFANIRSNG--LIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + A G I R+ + + V ++ G +R Sbjct: 687 NASDVRSMGRSATGVRGI---------RLRENDYVVGADVLNPDSEVFIISEKGFGKRTP 737 Query: 662 LSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + K A + + + T + DI+L T G +RF I + G Sbjct: 738 AADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDV-SQTG 796 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 R+++GV I + + +V +MA V + + MS+ Sbjct: 797 RSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSNGDTSEDSDS 848 >gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K] gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K] Length = 906 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 389/915 (42%), Positives = 540/915 (59%), Gaps = 102/915 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA + Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL+K Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ K+TVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT I GR GI+ AY GRG+I +R + +E Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 327 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 481 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600 Query: 617 ALINILSLNQGERITTIMPFPEDESSWN------------------------NLYVVFAT 652 ++N++ L GE++ I+P +V T Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G IA+ ++ DE+++ + ILL+T G +RF S Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L GD+V+ Sbjct: 721 VRPM-GRTAYGVKGITLEAGDEVV------------------------------------ 743 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + +LTV+ G+GKRT ++R+ R GKG+ Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV + + K+E+V Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850 Query: 892 VSVERIRESEIVDEA 906 V V R+ E+ E Sbjct: 851 VGVARVAETTPEAEE 865 >gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] Length = 824 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 365/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 9 QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ G P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQGGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL D I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLEHDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+L II++EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D + Y+ F T+ G V+R ++DF I + Sbjct: 583 RTAKGLPIVNLLKLDEGETIQTIINVEQD--HSQDSYLFFTTRLGVVKRTSVADFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ +V Sbjct: 700 DGDQVVGAGVVS------------------------------------------------ 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + VN Sbjct: 712 -----DNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++++++ G +IR V I R+T GV + ++ ++V+ + + + + E Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 824 >gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] Length = 859 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 377/897 (42%), Positives = 553/897 (61%), Gaps = 84/897 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + E E I ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MAEETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G++ NK + K AR+ GEV+GKYHPHG++++YD + RMAQ WSLR +LI+GQGNFGS+ Sbjct: 61 QGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL+K A +L D+ KDTVDFR N+D S +EP VL AR PN+LVNG Sbjct: 121 DGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNI HNL EV+D +A ID+ +I + LM+ ++ PDFPTG +I G G++ A Sbjct: 181 GIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIYGYEGVREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE S +RE+I+VTEIPYQVNKA M+E+ AELV EK+I I+++R Sbjct: 241 FETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V E+KR A+A ++LN LY+YT+LQ+ FSVN +AL +P L ++ Sbjct: 301 DESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGRPMLLNLKDMIVH 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVVVRRTK+ L +A RAH+L GL IA+ +LDEV+ +IR S P+ AR LM + Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I+ E L Sbjct: 421 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYADL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I+ +L+ S + IIK+EL+ VK+ RRT IV ++ ED I E++V+ Sbjct: 455 MKQIEYLKSVLADESLRMSIIKEELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR PL+ YR Q RGGKG G RDEDF+ +F+ S H +LFF+ G Y Sbjct: 515 TISHEGYIKRTPLTEYRTQGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYW 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 +V+ +P GS ++G+A+ NI+++++ E+I + D+ N +++ TK G ++ Sbjct: 575 LRVFEIPEGSRTSKGRAIQNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIK 634 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ DE+L T ++I++ + G+ +RF S +R G Sbjct: 635 KTTLEAYSRPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPM-G 693 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRGISLA D+V+ M + Sbjct: 694 RTATGVRGISLAHDKDEVVGMISIDSP--------------------------------- 720 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 E +L VSEKG+GKRT D+R++NR GKG++ +++ ++ Sbjct: 721 -------------------ESTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINIT--DK 759 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LVA+ V DND +++++ G +IR+ ++ +R+ RAT+GV + + + + + SV Sbjct: 760 TGQLVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816 >gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] Length = 870 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y Sbjct: 3 DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+P Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 THNL EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++ Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+ Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+ Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D +R E + I +I Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G+A+ N+L++ +++ + + D N+ Y++F TK G +++ L + + Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G+ Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694 Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +L + D+V+ M + + Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ + Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821 Query: 905 EAE 907 AE Sbjct: 822 IAE 824 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +K+ L Y R+ G + + +R++D + + + + + V+ + G + Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + A G + L + + + ++ + V+ ++ G +R+ Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731 Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + D+ G + + + ++++++ T END+++ K G +R ++ + V G Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790 Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVR I+L K D++ S+ VL + + + + + + Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGRELSENQASLGTD 850 Query: 778 DSSVEGNISEERCQELKLKE 797 E E+ ++ E Sbjct: 851 VDLPESEEDNEQNDNEEITE 870 >gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] Length = 813 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 378/884 (42%), Positives = 547/884 (61%), Gaps = 87/884 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + +++I DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRI + M ++ ++NK Y K Sbjct: 2 DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+YDAL RMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R Sbjct: 62 ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + H + D+ K+T+ F+PNYD + EPVVL AR PN+L+NG GIAVGMATNIP HN Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ G +A++D+PDI + LM I GPDFPT I G GIK+AY TGRG+I +R Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARV 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E++ R +++TE+PYQVNKA +LE+IAELV++K+I I D+RDESDR+G RVV+ L Sbjct: 242 EVEESGR-RNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++G VI NQLY++T+L+S F V M+A+ KPE L G+L F+ FR V++RRT+ Sbjct: 301 RQGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQ 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A RAH+L GL A+ +LDEV+ +IR + P A++ LM+R Sbjct: 361 YELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMER-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S+VQ +AILE+RL RLTGL R+ I E + EI+ ILSS Sbjct: 407 ------------FEFSDVQAQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSA 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + +I++E+ + D+ R+T I+ ++ ED I E+MVVT+S GY+KR PLS Sbjct: 455 ALVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLS 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 VYR+QRRGGKGR+G+ R+ED VT LF STH +L F++ G VY KV+ +P P A Sbjct: 515 VYRSQRRGGKGRTGMSTREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSAL 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N+L + + ERI T++P E + + V AT++G +++ LS + +G Sbjct: 575 GKAIVNLLPVQKDERIQTVLPVKEFK---EGFFAVMATRNGVIKKTDLSAYSNPRSTGIR 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE++SV +D+ L ++ G+ +R R GR S GVRG+ L G + Sbjct: 632 AIVLDDDDELISVCVTDGSHDLFLMSRAGKSIRVNEREFRPL-GRVSRGVRGMKL-DGSR 689 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ M ++ A Sbjct: 690 MVGMDVIEEGKA------------------------------------------------ 701 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++EKGFGKRT++ ++R +R GKG+ V++ N G++V V +++QI+ Sbjct: 702 -----ILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERN--GSVVGFRQVGEDEQIL 754 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++D G LIR+PV +I R T+GV + + + E+VV V + Sbjct: 755 MITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDVAVLP 798 Score = 88.3 bits (217), Expect = 6e-15, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 83/208 (39%), Gaps = 18/208 (8%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754 K G RF S ++ + + + L + +++I ++ + + Sbjct: 400 KQGLMERFEFSDVQ------AQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSS 453 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + R + + + + E ++L E+ ++T+S G+ KRT Sbjct: 454 AALVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPL 513 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG + + + ++F + +D +++ +++G + + V EI Sbjct: 514 SVYRSQRRGGKGRTGMSTREEDL---VTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVG 570 Query: 875 RATKGVVIFST---AKDERVVSVERIRE 899 + G I + KDER+ +V ++E Sbjct: 571 PSALGKAIVNLLPVQKDERIQTVLPVKE 598 >gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503] gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7] gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503] gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] Length = 870 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y Sbjct: 3 DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+P Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 THNL EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++ Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+ Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+ Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D +R E + I +I Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G+A+ N+L++ +++ + + D N+ Y++F TK G +++ L + + Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G+ Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694 Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +L + D+V+ M + + Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ + Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821 Query: 905 EAE 907 AE Sbjct: 822 IAE 824 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +K+ L Y R+ G + + +R++D + + + + + V+ + G + Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + A G + L + + + ++ + V+ ++ G +R+ Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731 Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + D+ G + + + ++++++ T END+++ K G +R ++ + V G Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790 Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVR I+L K D++ S+ VL + + + + + + Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGREFSENQASLGTD 850 Query: 778 DSSVEGNISEERCQELKLKE 797 E E+ ++ E Sbjct: 851 VDLPESEEDNEQNDNEEITE 870 >gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] Length = 870 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y Sbjct: 3 DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+P Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 THNL EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++ Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+ Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+ Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D +R E + I +I Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G+A+ N+L++ +++ + + D N+ Y++F TK G +++ L + + Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G+ Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694 Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +L + D+V+ M + + Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ + Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821 Query: 905 EAE 907 AE Sbjct: 822 IAE 824 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +K+ L Y R+ G + + +R++D + + + + + V+ + G + Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + A G + L + + + ++ + V+ ++ G +R+ Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731 Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + D+ G + + + ++++++ T END+++ K G +R ++ + V G Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790 Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVR I+L K D++ S+ VL + + + + + + Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGRELSENQASLGTD 850 Query: 778 DSSVEGNISEERCQELKLKE 797 E + E ++ E Sbjct: 851 VDLPESEMDNELDNNEEITE 870 >gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] Length = 827 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 366/898 (40%), Positives = 533/898 (59%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + Sbjct: 2 QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R LI+GQGNFGS+DGD PAA RYT Sbjct: 62 KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVVDG +A+I+NPDI++ LM+ + PDFPT +I G G+K AY TGRG +VIR Sbjct: 182 PQNLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIYGYEGVKQAYLTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+ Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGMPRVLNLKQMMEYYIRHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L A RAH+L GL I + NLDEV+ IR SP+ TA+ LM++ Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q++AILE+RL RLTG+ R I E + I E I Sbjct: 412 ----------------FGLTEIQSKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ + + II++ELL VKD RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LANPQKQMQIIREELLKVKDVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G + +DFV +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L E+I + + ++V AT +G V++ L +F + R Sbjct: 576 RTARGRSLANIMELQPAEKIRAYINIRNFD---EPGFIVMATGNGTVKKTGLDEFSRPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE++ ++ I+L G VRFP S IR GR ++GVRGI+L Sbjct: 633 NGIAAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRSM-GRTAMGVRGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 ++ ISM D Sbjct: 692 ADEKCISMVTTKRFDTT------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + + GA+V + VND Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KTGAMVGLLDVNDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D +I++++ G + R V++IR+ R T GV + + + ++ R+ +S+ + +S Sbjct: 758 DDLIIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALARVPKSDEEIDPDS 815 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 15/230 (6%) Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E + + + G VK+ L + RR G + DE L ++ Sbjct: 605 DEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELIDARL--TDGDHQIILAK 662 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G+V + + A G + ++L+ E+ +++ + ++ T Sbjct: 663 SSGYVVRFPESEIRSMGRTAMG---VRGITLDADEKCISMVTTKRF-----DTTLLAVTD 714 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R+++ D+ R + + L + ++ ++ + E+D+++ T G R + Sbjct: 715 NGFGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVGLLDVNDEDDLIIITNNGIVNRQHV 774 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 S IR GRN+ GVR I L GD + ++A V +D + D Sbjct: 775 SDIR-LTGRNTSGVRLIRLMAGDIISALARVPKSDEEIDPDSLPENPDGQ 823 >gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] Length = 833 Score = 871 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTSVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] Length = 836 Score = 871 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 382/897 (42%), Positives = 534/897 (59%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ K A Sbjct: 6 VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ YHPH ++A+YDAL RM Q +SLR L+EGQGNFGSVDGD AA RYTE +L Sbjct: 66 GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ K+TVDF+PNYDG QEPVVL A+ PN+LVNG GIAVGMATNIP HNL Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV DG + +IDNP+ D L+E+I+GPDFPTG VILGR GI+ AYATG+G +VIR +H Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTH 245 Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ QI+VTE+PYQVNKAA+LEKIAELV+ RI I DLRDESDR G R+VIEL Sbjct: 246 IEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRT 373 KR A +LN L+++T LQ F VNM+AL P TL +L+ ++ R+EVV RRT Sbjct: 306 KRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR RAH+L GL IA+ +LDEV++ IR S E+AR L+ R Sbjct: 366 EHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINR------------- 412 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +EVQ AIL+++L RL L R I NE L EI ++L+ Sbjct: 413 -------------FGFTEVQANAILDMQLRRLAALERHKIENEYRDLLKEIAGLEELLAD 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++L +I++EL+ ++D+ RRT I + ++ DED I ++V +++ GYVKR+ Sbjct: 460 PAKILAVIREELVQLRDKFGDERRTLIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIAD 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGG+G +G+ +R+ED V + TH S+LFF+ G V++ KVW LP A Sbjct: 520 GTYRQQHRGGRGVTGMTLREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTA 579 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG +IN++ + GE IT ++P + + Y+ T++G V+R +L F + SG Sbjct: 580 RGIPVINLIGIEPGETITALLPVRDFA---SARYLFMCTRNGRVKRTRLDQFASVRSSGL 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L+ DE+ V + ++++L T+ GQ +RF + +R GR + GV GI + GD Sbjct: 637 IAIGLEEGDELAWVRLTSGNDELILVTEQGQAIRFKETDVRPM-GRPAAGVIGIRMEPGD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI+ E+ Sbjct: 696 RVIA-----------------------------------------------------AEV 702 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +Q +L VS G+GKRT+ +FR+ R G+G+ A +++ N G + A V D D I Sbjct: 703 VQPDQDLLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERN--GPVAAARVVTDTDSI 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LVS +G +IRVP +I R T+GV I + ++V SV IR E + A+ E Sbjct: 761 MLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEE 817 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 15/237 (6%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 + G VKR L + + R G G+ DE L S + ++ + G Sbjct: 612 FMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAWVRL--TSGNDELILVTEQGQAI 669 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + P R A + + + G+R+ + ++ + +G +R Sbjct: 670 RFKETDVR---PMGRPAAGVIGIRMEPGDRVIAAEVVQ------PDQDLLVVSANGYGKR 720 Query: 660 NKLSDFIQINR--SGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716 LS+F R G AMK+ R+ ++ T + I+L + G +R P I Sbjct: 721 TALSEFRVQGRGGQGVTAMKITERNGPVAAARVVTDTDSIMLVSLRGMVIRVPAEQI-SR 779 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR + GV + L + DQV S+ ++ + + +++ + D Sbjct: 780 IGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEEASADTSETAGAARDEAAGE 836 >gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] Length = 858 Score = 871 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 365/907 (40%), Positives = 548/907 (60%), Gaps = 86/907 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E+ I S + ++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 1 MAEEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K++ K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGDP Sbjct: 61 TPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNLGEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+ Sbjct: 181 MATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R + IE +E I+VTE+PY VNKA ++E+IAEL R+KRI I + DESD+ Sbjct: 241 GVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+ IE++R SA V+LN LY+ T +Q+ FS NM+A+ +P+ +L +L A++ + Sbjct: 301 EGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGRPKLLSLKDMLVAYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRT++ L KA+ RAH+L GL IA+ ++D ++ IIR S E A+++LM Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLM------- 413 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+ Q++AIL++RL RLTGL RD I E L I Sbjct: 414 -------------------VDYALSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL V+ + RRT + + +EDED I ED++V+++H Sbjct: 455 DFQDILAKPERIDEIIYTELLEVQSKYGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+ S +RAQ RGG+G G+ + D+DF+ +L STH ++LFF++ G VYK K + Sbjct: 515 AGYIKRMLQSEFRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L + GE I T++ D S ++ Y+ F T+ G V+R +++ Sbjct: 575 EVPEYGRTAKGIPVVNLLGIESGESIQTVINVRGDASESSD-YLFFTTRQGVVKRTPVNE 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I G A+ L DE+++V + +I++ T G V F A+R GR++ GV Sbjct: 634 FGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSM-GRSAAGV 692 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ +++ Sbjct: 693 RGITLRPDDYVVGAQVLID----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L ++EKG+GK+T + I R GKGI+ V++ N G L + Sbjct: 712 ------------NGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKN--GPLAGL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEI 902 V+ ++ I+L ++KG +IR V+ I RAT+GV + D V + ++ +E Sbjct: 758 KVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKVEHVVAEE 817 Query: 903 VDEAEST 909 VD+ ++ Sbjct: 818 VDDEDTD 824 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 17/276 (6%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + + D D + + G VKR P++ + R G + + D D + Sbjct: 596 SGESIQTVINVRGDASESSDYLFFTTRQGVVKRTPVNEFGNIRAHG--LKAINLHDGDEL 653 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 ++ + +++ + G+ + A G I + + ++ Sbjct: 654 INVLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLRPDDYVVGAQVLI--- 710 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQE 693 +N +V+ T+ G ++ + + I G +K E + ++ Sbjct: 711 ------DNGHVLIITEKGYGKQTPVDQYP-IKGRGGKGIKTAQVTEKNGPLAGLKVVDGS 763 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 DI+LTT G +RF + +I GR + GVR I L V + A V H A+ + Sbjct: 764 EDIMLTTNKGVMIRFTVDSISE-TGRATQGVRVIRLDDDSAVATFAKVEHVVAEEVDDED 822 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ + E + + ++ Sbjct: 823 TDLSEASSDLPTAPTEGEQPAEVTELLHRAENDDQE 858 >gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] Length = 822 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 369/905 (40%), Positives = 560/905 (61%), Gaps = 90/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S + A+ ELM + Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKYEDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+ G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINIESERS--DDAYIFFTTRAGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TKLG VRF S++R + R++ GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMS-RSATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ ++ Sbjct: 693 EGDAVVGARVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R+GKG++ +++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKN--GHLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905 + +++++D G +IR V I R+T GV + ++ ++V+ + +E + E Sbjct: 758 EDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAEKEEVGADNE 817 Query: 906 AESTE 910 ES E Sbjct: 818 TESEE 822 >gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 838 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis] gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76] gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137] gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000] gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017] gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027] gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141] gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244] gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031] gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043] gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312] gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342] gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346] gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B] gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A] gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62] Length = 833 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341] Length = 833 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSTEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] Length = 822 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 376/900 (41%), Positives = 552/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ LDEV+ IIR S A+ +LM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 EKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-ENNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L ++EKG+GKRTS+ ++ R GKGI+ ++++ N G L + V+ + Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ +E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEEVEQASEDQE 818 >gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK72] Length = 826 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 366/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+I+VTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADNRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823 >gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 907 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 388/915 (42%), Positives = 540/915 (59%), Gaps = 102/915 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA + Sbjct: 28 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL++ Sbjct: 88 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ K+TVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT I GR GI+ AY GRG+I +R + +E Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 267 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 328 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 387 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 388 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 431 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 432 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 481 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 482 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 541 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 542 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601 Query: 617 ALINILSLNQGERITTIMPFPEDESSWN------------------------NLYVVFAT 652 ++N++ L GE++ I+P +V T Sbjct: 602 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVT 661 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G IA+ ++ DE+++ + ILL+T G +RF S Sbjct: 662 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 721 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L GD+V+ Sbjct: 722 VRPM-GRTAYGVKGITLEAGDEVV------------------------------------ 744 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + +LTV+ G+GKRT ++R+ R GKG+ Sbjct: 745 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 793 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV + + K+E+V Sbjct: 794 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 851 Query: 892 VSVERIRESEIVDEA 906 V V R+ E+ E Sbjct: 852 VGVARVAETTPEAEE 866 Score = 98.3 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 16/245 (6%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DEI+ + ++ D + RF +S ++ A R L + + Sbjct: 403 IALDHIDEIIELIKKAKDRD---AARDEMMARFALSELQAKAILEMQLQRLTGLERQKIL 459 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +A V E + K + + +++ + + + ++G S+ ++L Sbjct: 460 DELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIA 519 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E+ ++TVS G+ KR +R R G+G + + +L F + + +++ Sbjct: 520 EEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATRDEDFLESL---FVASTHSYLLV 576 Query: 856 VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS---VERIRES----EIVDE 905 SDKG + + V+EI A R KG V + A E+V + V R+ E + E Sbjct: 577 FSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAE 636 Query: 906 AESTE 910 E E Sbjct: 637 GEGAE 641 >gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK115] Length = 826 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 366/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] Length = 809 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 370/883 (41%), Positives = 528/883 (59%), Gaps = 85/883 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ K Y Sbjct: 5 EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE Sbjct: 65 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF PNYD S +EP VL A++P +L NG GIAVGMATNIP Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV+DG + +ID PD ++ LM +I+GPDFPT +ILG GI+ AY TGRG I +R Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 HIE TS R +I+VTE+PYQVNKA ++EKIAELVR+K I I L DESDR G R+VI Sbjct: 245 RVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +++R A+A+VILNQLY++T LQ F V M+AL P TL +L ++ +++V+ RR Sbjct: 305 DVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ Sbjct: 365 TKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLME------------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+LRL RLTGL R+ I E + I +L+ Sbjct: 412 -------------DFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ IIK ELL+V+++ RRT I ++ ED I +ED+V+T++H Y+KR+P Sbjct: 459 DEGKIDKIIKDELLAVREKYGDERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR Q+RGG G +G+ ++ DFV ++ + +TH ++LFF++ G VY K + + S Q Sbjct: 519 LDTYRRQKRGGVGVTGMGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQ 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A+IN+L L E+IT ++ E Y+ ATK G V++ LS+F I R G Sbjct: 579 AKGTAIINLLQLESEEKITAVIQVKEFL---PERYLFMATKKGIVKKTSLSEFQSIRRGG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD D+++ V+ E ++L T G V F +R GR + GV+GI+L G Sbjct: 636 LNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSM-GRTARGVKGINLKAG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M + Sbjct: 695 DVVVGM-----------------------------------------------------D 701 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +LT++ +G+GKRT++ ++R+ R GKG+ V++ + GA++ + V + Sbjct: 702 NLARNAEVLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTE--KTGAVIGLKVVRPGQE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +IL++ G +IR V+EI + SR T+GV + + ++ S Sbjct: 760 LILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDKAASFA 802 >gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] Length = 859 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 368/896 (41%), Positives = 543/896 (60%), Gaps = 62/896 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + + Sbjct: 4 PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG +A+I NP++ L++II GPDFPTG ILGR+GI +AY +GRGSI + Sbjct: 184 PPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DRE I++T++PYQ NKAA++E+IA+LV +KRI I+D+RDESDR Sbjct: 244 RGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L+ F+ FR Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + TA++EL+++ Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQ------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS VQ AIL+++L RLT L + I E L ++I + Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II++EL +K TPRRT IV ++ D D I E ++ ++ G Sbjct: 458 LKDILARRERIEAIIEEELAQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ+R +G++ ++++D V H VLFFS G VY +++ Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 S ARG ++ +L + + E+IT+I+ E +++++V T++G +++ LS F Sbjct: 578 QAASRTARGIPIVQMLPIPKDEKITSIVAVSEFS---DDVFLVMLTRNGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V +E+ I+L T G + F +R GR + GV Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM I+ + T + + D + N Sbjct: 694 KAMKLKKGDELISMDIL-----------------------TAQVTAGMAYTEEDEEILDN 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +EE +E +IL ++ G+GKR FR+ R+G G+RA ++ L ++ Sbjct: 731 ENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKF--KSDSDCLASL 788 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 VN D++++VS++G +IR V+ I + SRA GV + ++ + +V + + Sbjct: 789 RVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAAVALVPPA 844 >gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] Length = 816 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1] Length = 826 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 368/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 833 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 363/887 (40%), Positives = 543/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 809 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 364/894 (40%), Positives = 559/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I+VTE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+ I + D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V+ ++ G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D+D+I++ S +G IR+ V+++ + R T+GV + +V S+ RI+ E Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809 >gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] Length = 814 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 372/898 (41%), Positives = 548/898 (61%), Gaps = 90/898 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + + + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ K+TVDF PN+D + +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V + +N + ++ +++II+GPDFPTGA+ILG GI+ AY T Sbjct: 182 NIPPHNLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+VILNQLY++T LQ F V M+AL +P+ ++ +L ++ Sbjct: 302 NREGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLNYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ L++ Sbjct: 362 HQEEVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIE---- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L+EVQ +AI+++RL LTGL R+ + E L Sbjct: 418 ----------------------AFELTEVQAQAIVDMRLRALTGLEREKLETEYAELMKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E+L + + RRT I D+ ED I R+D+V+T++ Sbjct: 456 IGELKAILADRKLLLGVIKEEILIIDGKYSDERRTSIGFDEFDISMEDLIPRQDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ DED+V +LF+ STH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A+IN+L L E+IT ++P E + Y+ ATK G V++ ++ Sbjct: 576 YEIPEASRTARGTAIINLLQLMPDEKITAMIPIDEYK---EGQYLFMATKKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ Q+ DI+L TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRA-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++LA D+V+ M Sbjct: 692 VRGMNLADRDEVVGM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + +L VSEKG GKRT+ +F NR GKG++ +++ + G +V Sbjct: 707 --------QLHTQGTHLLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V VN++++I++++ +G +IR+ N I + R T GV + + + V S+ ++RE+E Sbjct: 757 VKAVNEDNEIMIINTEGIVIRMECNSISVLGRITSGVKLINLNDNATVASIAKVRETE 814 >gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1058] Length = 826 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 367/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK678] Length = 826 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 367/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEIKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 809 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 363/893 (40%), Positives = 560/893 (62%), Gaps = 88/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EEFDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ +++V+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L++R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FGFTEVQAQAILDMRLQRLTGLERQKIEEELAELLKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYV 548 +L++ + + IIK+E+L +K++ RRT+I++ + +E+ +++E D V+T++H GY+ Sbjct: 456 VLANEAMVKEIIKKEILEIKEKYKDERRTKIIQDEQEDFEEEELIQEQDTVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGGKG +G+ R+EDFV ++F+ +TH +LFF+ G Y+ + + +P Sbjct: 516 KRLPLDTYKSQKRGGKGITGISTREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G A++N++ + + E+IT M + +++ TK+G +++ LS+F Sbjct: 576 ASRQAKGTAIVNLIQIGKDEKITACMTVKDF----KEGFLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++++L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD V+ M Sbjct: 691 LEDGDFVVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V++ + G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSDIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRES 900 D D+I+L S +G IR+ ++++ + R T+GV + D +V S+ RI+ Sbjct: 756 DEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAE 808 >gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] Length = 837 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 368/912 (40%), Positives = 560/912 (61%), Gaps = 95/912 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRI++ M+++ + Sbjct: 2 EDNIFDKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ K+TVDF PN+D + +EP VL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V +ID+ + ++ +++II+GPDFPTG +ILG GI+ AY T Sbjct: 182 NIPPHNLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +I+V+E+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G RVVIEL+R A+A+VILNQLY++T LQ F V M+AL G +P+ L+ +L ++ Sbjct: 302 SREGMRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLMEMLNYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S + A+ ELM+R Sbjct: 362 HQEEVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L++VQ++AI+++RL LTGL R+ + E +L + Sbjct: 419 -----------------------FGLTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQ 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+ IL+ R LLG+IK+E+L ++D+ RRT I D+ ED I RED+V+T++ Sbjct: 456 IEHLRAILADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPREDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ ++AQ RGGKG G+ DED+V +LF+ +TH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG A++N+L L GE+I+ ++P + ++ Y++ ATK G +++ + Sbjct: 576 YEIPEASRTSRGTAIVNLLQLMPGEKISAVIPIEKYN---DDEYLLMATKKGLIKKTPIK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ ++D+ + TK GQC+RF S +R GR S+G Sbjct: 633 EYANVRKTGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRP-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L D+VI M I Sbjct: 692 VRGMNLVDRDEVIGMQI------------------------------------------- 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +L VSE G GKRTS +F NR GKG++ +++ + G +V Sbjct: 709 ----------DSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----R 898 V V+++++I++++ +G +IR+ + I R T GV + + + ++V + ++ Sbjct: 757 VKAVDEDNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIAKVRRGDES 816 Query: 899 ESEIVDEAESTE 910 E ++V+ ESTE Sbjct: 817 EDDLVEPEESTE 828 Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 97/242 (40%), Gaps = 17/242 (7%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + ++ ++ + G +K+ P+ Y R+ G + + +R+ED + ++ + V Sbjct: 609 EKYNDDEYLLMATKKGLIKKTPIKEYANVRKTG--LAAITLREEDELIEVKYTDSDHDVF 666 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + + G +N++ ++ + ++ Sbjct: 667 MVTKYGQCIRFNESDVRPTGRTSMGVRGMNLVDRDE---------VIGMQIDSQGTELLI 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCV 706 +++G +R + +F N G +K E ++ V+ ++N+I++ G + Sbjct: 718 VSEYGMGKRTSIDEFTAQN-RGGKGVKCYKITEKTGNVVGVKAVDEDNEIMIINTEGIII 776 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R I GR + GV+ I+L +GD+V +A V D D+ + + + + Sbjct: 777 RMKCDGISEL-GRVTSGVKLINLPEGDKVACIAKVRRGDESEDDLVEPEESTEDAENVET 835 Query: 767 GD 768 + Sbjct: 836 EE 837 >gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK330] Length = 826 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 368/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630] gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus faecalis OG1RF] Length = 833 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 363/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N+ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612] gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612] Length = 834 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 379/905 (41%), Positives = 547/905 (60%), Gaps = 93/905 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V+I +EM++ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 6 EYDRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPT 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ A+YDA+ RMAQ++S R + I GQGNFGS+DGD AA RYT Sbjct: 66 RKSARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ KDTVDF PN+D S EP VL AR P++LVNG GIAVGMATNIP Sbjct: 126 EAKMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVDG +A IDNPDI +D LM I+GPDFPT ++LG++GIK AY TGRG I IR Sbjct: 186 PHNLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 +E T R+QIVVTEIPY VNK+ ++EKIAELV+EKR+ IADLRDE+D ++G R+ Sbjct: 246 SKVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRI 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-------KPERFTLIGILKAFVA 363 VIELKR A+ +ILNQLY++T LQ F V M+AL G +P+ L +L +V Sbjct: 306 VIELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 ++E++ RRT + L KA RAH+L GL IA+ N+DEV+ +IR + + + A+ +LM+R Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMER--- 422 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L+E+Q +AIL++RL RLTGL R+ I E L Sbjct: 423 -----------------------FALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKM 459 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ +L IIK EL +K++ RRT + D + ED I E++V+T++ Sbjct: 460 IAEYKAILADEQLVLNIIKDELTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMT 519 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H+GYVKR+ YR+Q+RGGKG + + R+ DFV LF +TH +LFFS+ G VY+ K Sbjct: 520 HIGYVKRISADTYRSQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKA 579 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P G ARG A++NIL L+ E+ITT++P E + ++ ATK G +++ L+ Sbjct: 580 FEVPEGGRTARGTAIVNILQLDPDEKITTMIPVKEFT---ADKCLIMATKQGIIKKTDLT 636 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ ++G I + L DE+++V + DI++ T+ G +RF +R R S+G Sbjct: 637 EYDSSRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLK-RTSIG 695 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L D V+ M IV Sbjct: 696 VRGIELRDDDVVVGMDIVSD---------------------------------------- 715 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + F+L VS+ G+GK TS +R R GKG++ V+K + G LV Sbjct: 716 -------------DLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTK--KTGELVG 760 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++ + +I++++++G +I++ N+I R T+GV + E++ ++ ++ + + Sbjct: 761 FCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVYKEDPE 820 Query: 904 DEAES 908 ++ E Sbjct: 821 EDIED 825 >gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] Length = 902 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 367/906 (40%), Positives = 548/906 (60%), Gaps = 33/906 (3%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++D + K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ Sbjct: 2 TGANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELK 61 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 WN Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +S+R +L++GQGNFGSVDGD Sbjct: 62 NNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDA 121 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE R+ K AH +L D+ ++TV+F NYDGS +EP+VL R+P +LVNG GIAV Sbjct: 122 AAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAV 181 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMAT+IP HNL + + GC+ ++++P+ +D L++I++ PDFPTGA I G TGI+ Y TG Sbjct: 182 GMATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIYGLTGIRAGYQTG 241 Query: 245 RGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 RG +VIR SHIE + RE IVV EIPYQVNK+ ++EKI ELVREK + IA+LRDE Sbjct: 242 RGRVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SD+ G R+VIELKRG +A+V+LNQLY+ T LQ FS+NMVAL +P L IL F+ Sbjct: 302 SDKDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQPRLLNLKQILNEFL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R EVV RRT + L KAR H+ G A+A++N+DE++ +I+ S + + AR LM R+W Sbjct: 362 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAW 421 Query: 423 NASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 ++ + +++ D +LS+ Q RAIL + L LTGL +D+ Sbjct: 422 QSALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQDE 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDED 531 I E SL I + LDIL+ R+ II+ EL+ ++ + RR+ I D+ DED Sbjct: 482 IVKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDERRSEINPFGGGDIADED 541 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +MVVT++H GY+K P S Y+AQ+RGG+G+ +DEDF+ LF+ +TH ++ Sbjct: 542 LIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMC 601 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++LG + KV+RLP G +RG+ + N++ L+ GE+++ I+P E + YV FA Sbjct: 602 FTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFP---EDEYVFFA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ +LS F ++ G A+ L D ++ V + +DI+L + LG+ +RF Sbjct: 659 TAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRFNEY 718 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + G A+ D +S ++ + + + + Sbjct: 719 --------WAGGAGDEDEAEND--VSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGGLR 768 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 L + + ++ E +L+ +LT ++ G+GKRT D+ + G+GI A D Sbjct: 769 GMRLPENGRIVSLLTAEIGSDLQ-----VLTATQNGYGKRTPIADYTRKGKGGQGIIAID 823 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N G L+ V+ D ++L++ G LIR V ++R RA GV + + + + Sbjct: 824 TGERN--GELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVRLINLDEGTTL 881 Query: 892 VSVERI 897 VS+ER+ Sbjct: 882 VSLERV 887 >gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] Length = 883 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 387/906 (42%), Positives = 548/906 (60%), Gaps = 70/906 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL++VK+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILP------------------------------ 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724 V + + + T G + ++ R S G+ Sbjct: 637 ---------------------VREYEEGRHVFMATASGTVKKTALTEFSRPR----SAGI 671 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++L +GD++I V D + + + + T+ G Sbjct: 672 IAVNLNEGDELIG---VDLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATGVRGINLGE 728 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 729 GDGVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E + Sbjct: 787 VQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDE 846 Query: 905 EAESTE 910 E +S E Sbjct: 847 ELDSLE 852 >gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012] Length = 828 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302] Length = 833 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] Length = 815 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 370/898 (41%), Positives = 554/898 (61%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ K+TVDF NYD S +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM R Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------YKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQRRGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + +N Y+ F T++G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAE--HDDNSYLFFTTRYGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK+G VRF S +R GR + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNM-GRAATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ Sbjct: 693 AGDHVVGASVIS------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKG+GKRT + ++ +R GKG++ ++++ N G L + VN + Sbjct: 705 -----DDQEVLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKN--GPLAGLMAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + ++++++ G +IR V I RAT GV + K ++V+ + + E Sbjct: 758 EDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVDEG 815 >gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1057] Length = 826 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 368/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823 >gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002] gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 809 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 372/894 (41%), Positives = 559/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+ I + D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +R GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V+ ++ G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGRIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I+L S +G IR+ V++I + R T+GV + D +V S+ RIR +E Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809 >gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] Length = 849 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 374/905 (41%), Positives = 553/905 (61%), Gaps = 86/905 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + I + +I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL+ M +G+ Sbjct: 1 MDENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K + K ARI GEV+GKYHPHG+ A+Y+ + RMAQD+S R L++G GNFGSVDGD Sbjct: 61 VADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K + LL D+ KDTVD+ NYDG EPVVL R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATG 244 MATNIP HNLGE +D AV+DNPDI + LM + I GPDFPTG ILGR GIK AY TG Sbjct: 181 MATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETG 240 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RGSI+IR +E ++QI+VTEIPY VNKAA++EKIA LVREK I I DLRDES+ Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 +G R+VIEL++ +DVILNQLYR TSLQ+ F VNM+ L P++ L +LK ++ Sbjct: 301 MEGIRIVIELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + +V VRRT++ L KA DRAH+L GL IA+ ++D ++ +IR S + A LM+ Sbjct: 361 QIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLME----- 415 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LSE+Q +AIL+++ RLTGL R I E +SL +I Sbjct: 416 ---------------------NFGLSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQI 454 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + DIL++ SR+L II+ EL +K++ + RR+ I++ +DM+DED I +ED+V+T++ Sbjct: 455 TDLKDILNNHSRVLEIIRSELTEIKEKYNDKRRSEIIDAEIDMQDEDLIPQEDVVITMTV 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVKR+P+ YR Q RGGKG G+ M ++D V + TH +L F++ G VY+ K + Sbjct: 515 NGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ S ++G ++N+L+L++ E++ ++P + ++ F T G V+R + + Sbjct: 575 QVPLASRTSKGIPIVNLLNLDKDEKVLAMVPVE--RENSPAKFLFFVTAQGIVKRVPIEE 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +SGKIA+ L DE++S + T + IL+ GQ +RF + +R GR + GV Sbjct: 633 FENIRQSGKIAINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPM-GRTATGV 691 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +G ++ G +VI M Sbjct: 692 KGFNV-NGSRVIGMT--------------------------------------------- 705 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + Q+IL+V+EKG+GK++ D+R++NR GKG++ V+ N G LV + Sbjct: 706 --------TDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKN--GPLVFL 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN ++ ++++++G +IR+ + ++ + SR T+GV + S ++ V +V + +SE + Sbjct: 756 RAVNGDEDCLIMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDDE 815 Query: 905 EAEST 909 E E Sbjct: 816 ETEGD 820 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 65/412 (15%), Positives = 134/412 (32%), Gaps = 38/412 (9%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L + N V+ IIR + +RS ID + + + Sbjct: 457 LKDILNNHSRVLEIIRSELTEIKEKYNDKRRSEIID------AEIDMQDEDLIPQEDVVI 510 Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 + + + + R ++ +I + + + LL Q + Sbjct: 511 TMTVNGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYR 570 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVRED---------------MVVTVSHLGYVKRVPL 553 P +R +G+ + + E + V+ G VKRVP+ Sbjct: 571 IKGYQVPLASRTSKGIPIVNLLNLDKDEKVLAMVPVERENSPAKFLFFVTAQGIVKRVPI 630 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + R+ GK + +R+ D + + + +L ++ G + + A Sbjct: 631 EEFENIRQSGKI--AINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPMGRTA 688 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G N + + Y++ T+ G +++KL D+ NR GK Sbjct: 689 TGVKGFN----------VNGSRVIGMTTDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGK 738 Query: 674 IAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 + D+ + + + D L+ T G +R + + RN+ GV+ IS+ Sbjct: 739 GVKTIQVTDKNGPLVFLRAVNGDEDCLIMTNEGIVIRISLEKV-SVYSRNTQGVKLISVE 797 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 V ++AIV ++ D + Q + + + + E Sbjct: 798 DNQTVSTVAIVYKSEDDEETEGDNENGELNQTTDQETAGIQEEDAQTEENAE 849 >gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK160] Length = 826 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 366/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] Length = 824 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 385/894 (43%), Positives = 548/894 (61%), Gaps = 88/894 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y Sbjct: 16 QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 75 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 76 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 136 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 195 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD +D LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 196 HNMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L+ ++ +E V+ RR Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITRR 375 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 376 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 421 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 422 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 469 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R ++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 470 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 529 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Q Sbjct: 530 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 589 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A+IN+L++ ERIT ++ E + Y+ TKHG V++ LS+F I R+G Sbjct: 590 AKGTAIINLLAVENDERITAVIQVKEFR---ADRYLFLGTKHGVVKKTPLSEFGSIRRNG 646 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+LA G Sbjct: 647 LKAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEEGVRSM-GRVARGVRGITLADG 705 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M ++ Sbjct: 706 DEVVAMDVLRS------------------------------------------------- 716 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V +N + Sbjct: 717 ----DSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903 ++L++ +G +IR V+EI + SR T+GV + + A+ +RV S+ RI +S Sbjct: 771 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDSAGE 824 >gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] Length = 809 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 371/894 (41%), Positives = 559/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R+++VVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+ I + D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SGK A+ L D ++ V+ + ++I+L + G CV F + +R GR++ GV+G++ Sbjct: 632 GKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V++ + G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I+L S +G IR+ V++I + R T+GV + D +V S+ RIR E Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809 >gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] Length = 840 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 371/891 (41%), Positives = 544/891 (61%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E +T +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNDRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y + RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I++ LME I GPDFPT +I+GR+GI+ AY TGRGSIV Sbjct: 183 IPTHHLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ +E I++TEIPYQVNKA ++E+IAEL REK+I I D+ DESDR G R Sbjct: 243 VRARVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N LY+ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D V+ +IR S ETA+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R I E +L I + Sbjct: 414 -----------------FQLSDKQAQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ R+L II++EL +K + RRT I+ ++++EDED I E++ +T++ GY+ Sbjct: 457 VLADEERILEIIREELEEIKIKYADKRRTEILTGDIVNIEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L S+H ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G LIN+L + E++ ++ E N ++ F TKHG V+R +S F +I Sbjct: 577 YGRTAKGIPLINLLGIESQEQVNAVINVSEFT---ENSHLFFTTKHGVVKRTDISQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A+ L DE++SV+ +I++ TK GQ + FP + IRV GR + GVRGI Sbjct: 634 RQSGLRAVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M I+ Sbjct: 693 LREDDEVIGMEILED--------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +Q +L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V+ Sbjct: 708 --------DQKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVS 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + I+L++ G +IR + + R+ GV + ++E+V +V ++ + Sbjct: 758 GEEDIMLMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKVPK 808 >gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 837 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 381/900 (42%), Positives = 552/900 (61%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL M ++G+ +K + Sbjct: 4 NKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A ++ D+ K+TVDF PNYD EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 124 EARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E +D A++DNPDI + LM I+GPDFPTG +ILGR GI+ A+ TGRGSI++ Sbjct: 184 PHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSILV 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+E + +IVVTE+PYQVNKA ++ KIA+LVREK+I I L DES+R+G R+ Sbjct: 244 RSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ A DVILNQLYR T LQ+ F VNM+AL P++ + L+ +V + +V V Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDVTV 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N AR LM++ Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQ---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q AILE+RL RLTGL RD I NE L I + DI Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMATIADLRDI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R+L II+ EL VK+ RRT I E DM+DED I ED+V+T++ GY+KR Sbjct: 458 LANHDRVLSIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P Sbjct: 518 MPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSG 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L+L++ E++ ++P D + +++F TK+G V+R +S+F I + Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVRPDS---ESSFLLFVTKNGLVKRTPMSEFDSIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ Sbjct: 635 NGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV- 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G V+ A Sbjct: 693 DGSIVVGAA--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L VSE G+GKRT+ ++R++ R KG++ +V+ N+ G LV+V VN + Sbjct: 702 --TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++V+D G +IR+ V +I I SR T+GV + + + DE V V + + E V+EA E Sbjct: 758 EDAMIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEEDVEEASDQE 817 >gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] Length = 877 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 390/894 (43%), Positives = 535/894 (59%), Gaps = 69/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD S EP VL R P +L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ C+A+ID PD+ + LM I GPDFPT A+I G +GI NAY TGRG I +R Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAIINGASGIYNAYTTGRGKIYLRAR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E R+ I+ TE+PYQVNKA +LEKIAELV+E ++ I+ LRDESD+ G R+VI Sbjct: 246 CHFEDIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN LY+ T Q++F +NMVAL +P L I+ AF+ R E+V RR Sbjct: 306 ELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHCMNLREIISAFINHRREIVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+RAH+L GLAIA+AN+DE++ +I+ + P A+ L++++W+A + L+D Sbjct: 366 TIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALLD 425 Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D G LSE Q +AILELRL RLTGL +D I NE L +I Sbjct: 426 RADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ II++EL+++K++ RRT I++ D+ DED I EDMVVT+SH Sbjct: 486 DEYLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PLS Y+AQRRGG+G+S ++ D+V L + +TH ++L FSS G VY KV+ Sbjct: 546 EGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK +N+L L +GE+I I+P E Sbjct: 606 QLPVASRAARGKPFVNLLPLEEGEKINAILPIRE-------------------------- 639 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 T I + T G + P+ F + + G Sbjct: 640 -------------------------FTDSKFIFMATTAGTVKKTPLKE---FENQRANGK 671 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 I L + D ++ +A+ + + A + + + Sbjct: 672 IAIDLREDDTLVGVAVTD----GQQNVLLFSSTGKAVCFNEADVRSMGRTASGVRGIRLQ 727 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ + E +L ++E G+GKRT +F R G+G+ A S N GA+V Sbjct: 728 EGQKVISLIIATEGTVLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARN--GAVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VNDND+I+L++D GTL+R PV+ I + R T+GV I K+E+V+ V+RI Sbjct: 786 VLVNDNDEIMLITDGGTLVRTPVDGISVVGRNTQGVTIIKLGKNEKVIGVDRIE 839 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 16/251 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + G VK+ PL + QR GK + +R++D + + + +VL F Sbjct: 640 FTDSKFIFMATTAGTVKKTPLKEFENQRANGKI--AIDLREDDTLVGVAVTDGQQNVLLF 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G + A + + + L +G+++ +++ E V+ T Sbjct: 698 SSTGKAVCFNEADVRSMGRTA---SGVRGIRLQEGQKVISLIIATE-------GTVLNIT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R KL +F R G+ + + + + ++I+L T G VR P Sbjct: 748 ENGYGKRTKLEEFTCHKRGGQGLIAIQTSARNGAVVGAVLVNDNDEIMLITDGGTLVRTP 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + I GRN+ GV I L K ++VI + + D + + S +T Sbjct: 808 VDGI-SVVGRNTQGVTIIKLGKNEKVIGVDRIEGLAGVDDADEDDLLEGAESELGASEET 866 Query: 770 EEITSLKNDSS 780 S + S Sbjct: 867 TNDDSEPGEES 877 >gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] Length = 850 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 368/906 (40%), Positives = 542/906 (59%), Gaps = 87/906 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E E E+ + M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MSEE--KDLEFFEEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R LI+G GNFGSV Sbjct: 59 HELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K A +L D+ KDT+++R NYD + +EP VL +R PN+LVNG Sbjct: 119 DGDSPAAMRYTEARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGAT 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+LGEV+ ++ NPD+ LME++ GPDFPTG ++LG++GI+ A Sbjct: 179 GIAVGMATNIPPHHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI +RG IE+ +E+I++TE+PY VNKA ++E+I++L EK+I I L Sbjct: 239 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLN 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIE++R SA V+LN LY+ T LQS F NM+A+ G +P+ +L IL+ Sbjct: 299 DESDRKGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRH 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +EEV+ RR+ + KA DRAH+L GL +A+ ++D +V I+R S + + A+ M Sbjct: 359 YLNHQEEVIRRRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNE 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++R+ RLTGL R+ I E L Sbjct: 419 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYADL 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMV 539 IKE +IL+S R II+QELL ++ + D PRRT ++ G EDED I +ED+V Sbjct: 453 QALIKELNEILASEERRYEIIEQELLEIQQKFDNPRRTELLVGEALSLEDEDLIEQEDVV 512 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++ GY+KR+ S ++ QRRGG+G G+ + D+DFV ++ STH S+LFF++ G VY Sbjct: 513 ITLTKNGYIKRLANSEFKTQRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVY 572 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P S A+G +IN+L+++ E+I I+ PE S ++ F T G V+R Sbjct: 573 QAKGYEIPEYSRTAKGLPVINLLNIDSTEKIQAIISVPE--SDETERFLFFTTLRGTVKR 630 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF I +G A++L D+++ V + ++ I+L T G V F +R GR Sbjct: 631 VKLSDFKNIRTNGLRAIQLREDDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAM-GR 689 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+SL D VI M I+ Sbjct: 690 TAAGVRGVSLRDDDYVIGMDILTP------------------------------------ 713 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E+ +L VSEKG+GKRT++ ++ + R GKG++ +++ N G Sbjct: 714 -----------------EREVLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKN--G 754 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV + V + ++++++KG +IR +++ R GV + +D V S+ + Sbjct: 755 PLVCLRTVTGEEDLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDR 814 Query: 900 SEIVDE 905 E +E Sbjct: 815 EEEAEE 820 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 15/255 (5%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + E + + G VKRV LS ++ R G + +R++D + + + S Sbjct: 608 SVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNG--LRAIQLREDDQLIRVVVTSGQD 665 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++ + G ++ A G +++ + + + P E Sbjct: 666 GIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRDDDYVIGMDILTPERE--------- 716 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704 V+ ++ G +R S++ R GK L ++ + T T E D+++ T G Sbjct: 717 VLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLVCLRTVTGEEDLMIMTNKGV 776 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +RF S + GR ++GVR + L + V S+AIV + + + + +++ Sbjct: 777 IIRFHASDV-SQTGRGALGVRMMRLDQDAIVSSLAIVDREEEAEETVTSSEETVVSEKVT 835 Query: 765 ISGDTEEITSLKNDS 779 + + Sbjct: 836 ENLQNFAQELVDEQE 850 >gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467] Length = 833 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 361/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 ISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] Length = 822 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE S +N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTVINAKSDEGS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L V+EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818 >gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12] gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 845 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 356/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + + +I IL Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D++ +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4] gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4] Length = 960 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 384/920 (41%), Positives = 556/920 (60%), Gaps = 44/920 (4%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 S++I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ NKKY KCA+ Sbjct: 31 ISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCAK 90 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G MG YHPHG++AIYDA+ R+AQ +S+R L++GQGNFGSVDGDPPAA RYTE RL Sbjct: 91 VVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARLM 150 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A ++ D+ DTVDF PNYD S EP VL ARYPN++VNG GIAVGMATNIP HNL Sbjct: 151 KIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNLT 210 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++ C+ +++NP L ++E ++GPDFPT I G++GI NAY TGRG ++R Sbjct: 211 EVINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIYGKSGIANAYRTGRGKFLMRAKCSR 270 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E SG RE I+V+EIPYQVNK ++++IAELV EK I DI+D+RDESDR G R+VIELKR Sbjct: 271 ENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELKR 330 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A +++LNQL+++TS+Q FS+ +A++ +P L ++AF+ R +VV RRT +L Sbjct: 331 TAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVELPLPDAIRAFIDHRVDVVRRRTAFL 390 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435 LNKARDR H+L+G IA+ +LD V+R IR S + AR L + + +L Sbjct: 391 LNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAGV 450 Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 G+ GT+ LS Q ILEL+L RLT L D++ EL + Sbjct: 451 TLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQVRE 510 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E IL+S +L +I +EL V+++ RRT+I++ ++ ED I E + VTV Sbjct: 511 NIAEYESILASDKKLRRVIIKELEEVREKYGDVRRTQIIDESSELTLEDLIADEQVAVTV 570 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+KR P+S YR QRRGG GR G+ R+EDFV L + STH +L F++ G V+ K Sbjct: 571 SHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLLCFTNSGRVFWLK 630 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++ +P +GK + ++L+L GE++ +P E + Y+ FAT+ G V++ L Sbjct: 631 IYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLE--DASKYIFFATREGIVKKTPL 688 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------AIRV 715 DF + G IA+ +D DE+++V + E+ + L T+ G VRF +R Sbjct: 689 PDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGGLRP 748 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI---------- 765 GRN+ G +GI+L KGD VI A+ + +R ++ L Sbjct: 749 M-GRNAGGNKGITLKKGDYVIGAAVTDSREKRDGQRDELAVATKLEKELAAVRAEIAAAE 807 Query: 766 --------SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 S + EE + + V + +L L IL+V+E G+GKRT ++ Sbjct: 808 AELQKARDSKNEEEAKAARKALDVVEEKLCKLDGKLGLSPCLILSVTENGYGKRTDVEEY 867 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R++NR G G+ S + G + ++ V++ +++ +S G +IR+ N IR A R+T Sbjct: 868 RLTNRGGSGVINMKASA--KTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIRAAGRST 925 Query: 878 KGVVIFSTAKDERVVSVERI 897 +GV + + D++V + I Sbjct: 926 QGVKLLNLDTDDKVAAAVTI 945 >gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK408] Length = 826 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4] gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4] Length = 802 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 381/886 (43%), Positives = 546/886 (61%), Gaps = 86/886 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + IT+EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ ++ + K Sbjct: 3 KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I GEV+ +YHPHG+A +YDAL R+AQD++ R L++G GNFGS+DGD PAA RYTE R Sbjct: 63 AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +L D+ KDTVDF PNYDG+ QEP VL +R PN+LVNG GIAVGMATNIP HN Sbjct: 123 LSRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG +A+IDNPD+ L+ LM + GPDFPTG +ILGR GI+ AYATGRG IV+RG + Sbjct: 183 LGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGKA 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE G+R IV+TEIPYQVNKA +LE+IAELV+EKR+ +ADLRDESDR G RVV+EL Sbjct: 243 TIE-RKGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVEL 301 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A VILN+LY++T L+ F V M+AL +PE +L +++ ++ ++EVVVRR + Sbjct: 302 KRDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVRRCQ 361 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A+ R V+ GL +AV N+D VV++I+ +P+ TA+ L+ Sbjct: 362 YELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLIS--------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T L+E Q +AIL++RL RLT L R+ + EL L +I +L+ Sbjct: 407 -----------TFGLTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADE 455 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +++ GI+K+EL ++K+ PRRT IV+ + ED I E +VV +SH GY+KR S Sbjct: 456 AKVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKS 515 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YR+Q RGG+G +G+ ++D DFV L++ +TH +LFF+S G V++ KV+ +P R Sbjct: 516 LYRSQHRGGRGVTGLKLKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGR 575 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G AL N+L L+ E++T I+P + + YV+ T+ G V++ L + I R G Sbjct: 576 GTALPNLLQLSPEEQVTAIIPVADFS---EDKYVLLVTRQGVVKKLPLGELANIRRVGLN 632 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE+++ E ++LL T+ G+ +RF + +R GR + GVRG+ L GD+ Sbjct: 633 AISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPM-GRAARGVRGMKLRPGDR 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V +A++ A Sbjct: 692 VAGLAVLDGAG------------------------------------------------- 702 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V+ G+GKR + DF + R G G+ A VSK + G +V V V D ++I+ Sbjct: 703 ----EVLLVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTS--GPVVGVEVVRDEEEIL 756 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L S G L R+ V E+ + R +GVV+ ++R+V++ +I E Sbjct: 757 LASAAGWLTRLKVKEVPVMGRQARGVVLMRLQPEDRLVALAKIGED 802 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 78/248 (31%), Gaps = 63/248 (25%) Query: 716 FAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + + + L + +++++ + + A + + + + Sbjct: 410 LTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKAL 469 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +E + + + R ++L EQ ++ +S +G+ KR +R +R G+G+ Sbjct: 470 KERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTG 529 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA---SRAT--------- 877 + + + L + N +D ++ + G + R+ V EI A R T Sbjct: 530 LKLKDGDFVRHL---YLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLS 586 Query: 878 -------------------------KGV-------------VI----FSTAKDERVVSVE 895 +GV + S + +V+ Sbjct: 587 PEEQVTAIIPVADFSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAA 646 Query: 896 RIRESEIV 903 E V Sbjct: 647 LPGPEEEV 654 >gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] Length = 857 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 357/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++++ ++ I +V+++ M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MANENGQDGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ++S R +L++G GNFGSVDGD Sbjct: 61 TPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D+ PNYD S +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ ++DNPD LM+ + GPDFPTG +++G++GI++AY +G+ Sbjct: 181 MTTNIPPHNLAEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+I +R +E RE+I+VTEIPY VNKA ++E+IAEL R+KR+ I DL DESDR Sbjct: 241 GTITLRAKVDVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VI+++R SA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ + Sbjct: 301 DGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLKSILEHYLVHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ RRT++ L KA RAH+L GL IA+ ++D +++IIR S +TA+ LM+R Sbjct: 361 EEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMER----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+ Q +AIL++RL RLTGL RD + NE N+L I Sbjct: 416 ---------------------YDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALIT 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-VSH 544 + DIL+ R+ II ELL ++ + RRT ++ G + +++ ++ E+ VV ++H Sbjct: 455 DLKDILAKPERIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P S ++ Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + Sbjct: 515 NGYIKRLPASEFKVQNRGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G +IN+L +N ER+ T++ ++ + F T+ G V+R + + Sbjct: 575 EIPEYGRTAKGIPIINLLGINSDERVQTVVNIGKEVKPEQA--LFFITRLGTVKRTAVGE 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G A+ L DE+ +V + +I + T G V F +A+R GR + GV Sbjct: 633 FANIRSNGLKALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSM-GRTAAGV 691 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L +GD V+ Sbjct: 692 RGIRLREGDYVVG----------------------------------------------- 704 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L + Q IL +SEKG+GKRT+ D+ I R GKG++ ++++ N G L + Sbjct: 705 ------SDLLIPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN--GPLAGI 756 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + I+L++D G LIR V + RAT GV + + +V ++ + Sbjct: 757 AAVTGEEDILLITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATVEAEPDEP 816 Query: 905 EAEST 909 E ++ Sbjct: 817 ETQTA 821 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 96/257 (37%), Gaps = 15/257 (5%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 E + ++ LG VKR + + R G + + ++D ++++ + ++ + Sbjct: 612 PEQALFFITRLGTVKRTAVGEFANIRSNG--LKALTLHEDDELSNVLMTDGQQNIFIGTH 669 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ + A G I + + ++P E ++ ++ Sbjct: 670 NGYAVSFSETAVRSMGRTAAGVRGIRLREGDYVVGSDLLIPGQE---------ILVISEK 720 Query: 655 GNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R +SD+ + + K A + + + T E DILL T G +RF ++ Sbjct: 721 GYGKRTAVSDYPIKGRGGKGVKTANITEKNGPLAGIAAVTGEEDILLITDTGVLIRFKVA 780 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + GR ++GVR I + +V +MA V + + + + + + Sbjct: 781 NV-SQTGRATLGVRLIRVDDEAKVATMATVEAEPDEPETQTATTEPTVPTENVTDTGLAQ 839 Query: 772 ITSLKNDSSVEGNISEE 788 + L + + N Sbjct: 840 VDDLLARAEADQNEPNN 856 >gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131] Length = 886 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 388/891 (43%), Positives = 548/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++ QGNFGS+DGD AA R Sbjct: 63 SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATN Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ V Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+SH Y Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ LS+F + Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+V+ + + D Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK405] Length = 826 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 367/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823 >gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] Length = 907 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 388/915 (42%), Positives = 541/915 (59%), Gaps = 102/915 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ +NK+Y KCA + Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL++ Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ KDTVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT +I GR GI+ AY GRG+I +R + +E Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 481 LMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600 Query: 617 ALINILSLNQGERITTIMPFPEDESS------------------------WNNLYVVFAT 652 ++N++ L GE++ I+P +V T Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G I + ++ DE+++ ILL+T G +RF S Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESD 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L +GD+V+ Sbjct: 721 VRPM-GRTAYGVKGITLEEGDEVV------------------------------------ 743 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + +LTV+ G+GKRT ++R+ R GKG+ Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV + + K+E+V Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850 Query: 892 VSVERIRESEIVDEA 906 V V R+ E+ E Sbjct: 851 VGVARVAETTPEAEE 865 >gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] gi|89516338|gb|EAS18999.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] Length = 840 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 367/900 (40%), Positives = 557/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y Sbjct: 3 DGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGDPPAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG VA IDN DI++D L+ ++ PDFPTG +I G G+K+A TGRG + IR Sbjct: 183 PHNLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIYGYDGVKDAMHTGRGRVKIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E+ RE I+V E+PYQVNKA M++K A+L+ EK++ I+ +RDESDR G R+V Sbjct: 243 GRVRLEEVK-GRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A ++++N+LY++T+LQS FSVN +AL +P+ + ++ FV R +VVVR Sbjct: 302 YILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKGRPQLLNVKEMIHYFVEHRHDVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA +RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D +RNE N L I + DIL Sbjct: 411 ---------------FELSEIQARAIVEMRLRQLTGLEQDKLRNEYNDLIATITDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + IIK+EL+ +K++ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ARKERRMDIIKEELIEIKEKYGDERRSQIEYAGGDLSIEDMIADEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P++ Y+ Q RGG G+ RDEDF+ D+F+ + H +LFF+ G + +V+ +P GS Sbjct: 516 PITEYKTQNRGGVGQKASTTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q + + ++ + DE N+ YV+ TK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + D +L + T ++ ++L K G+ +RF + R GRN+ GVRGI L Sbjct: 636 TNGINAITIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAM-GRNASGVRGIRL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V D++ Sbjct: 695 ADDNDEVIGMVAVNDMDSN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+R +NR GKG++ V++ + G LVA+ V Sbjct: 714 -----------ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTE--KTGGLVALKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+D +++++ G IR+ V +R+ RAT+GV + + ++ + +V ++ + E + E Sbjct: 761 DDDGLMIINKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQEEDSEINED 820 >gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.] Length = 808 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 363/891 (40%), Positives = 555/891 (62%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + ++ ++I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +WNK Y Sbjct: 3 ETEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGDPPAA RYT Sbjct: 63 KKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL + A +++DL K+TVD PNYD S EP +L A+ P +L+NG GIAVGMAT+IP Sbjct: 123 EIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV + +IDNPDI + L++I+ GPDFPT +I GR+GI +AY+TGRG + +R Sbjct: 183 PHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGIIHGRSGIYDAYSTGRGKVKVR 242 Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E ++ E IVVTE+PY VNKA ++EKIAEL+R+K+I + +RDESDR+G R+ Sbjct: 243 ARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 + LK+ + +I+N LY++T ++S F + +A+ +PE TL IL+ FV R+++++ Sbjct: 303 ALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNNRPEVLTLKQILEYFVLHRKDIII 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RTK+ L KA RAH+L GL +A+ N+DEV+ +I+ S +P A++ L+ R Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISR---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ +Q +A+L++RL RLTGL R+ I E ++L +I +I Sbjct: 413 ----------------FDMTPIQAQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S + +L IIK EL +K+E RRT I++ ++ ED IV EDMVVTVS GY+KR Sbjct: 457 LASETLVLNIIKDELTQIKNEYGDLRRTEIIDETENISIEDLIVEEDMVVTVSKDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P S+Y +Q RGGKG++ ++ ++EDFV+ LF+ STH LFF++ G VY KV+ +P Sbjct: 517 TPASIYNSQSRGGKGKTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAG 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GKA++N+L+ +GE++TT++ + E +V+ AT+ G ++R + + + Sbjct: 577 RTSKGKAIVNLLNFAEGEKLTTVLAVKDFE---PGSFVIMATRSGQIKRTDIMAYSRPRA 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+KLD DE+++V ++ + + +G+ +RF S IR GR + G+RG+ LA Sbjct: 634 GGIKALKLDEGDELIAVRITDGTLNVFVCSAMGKSIRFHESDIRA-TGRVTGGIRGMRLA 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 KGD+++ M ++ H Sbjct: 693 KGDRIVGMEVLTHG---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q + V+E GFGKRTS ++ + R GKG+ S+ N G +VA+ V+++ Sbjct: 707 -------QTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERN--GQVVAILIVDED 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D ++L++D G +IR P++ I + SR T+GV + + E+V+ R+ E + Sbjct: 758 DDLMLMADSGKIIRTPISGISVISRNTQGVKLINREATEKVIGAARLAEKD 808 >gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] Length = 855 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 367/905 (40%), Positives = 563/905 (62%), Gaps = 87/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821 Query: 906 AESTE 910 +T+ Sbjct: 822 NSNTD 826 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + DE + + Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 844 Query: 774 SLKNDSSVEGN 784 S + Sbjct: 845 SDLTAEANSEE 855 >gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK353] Length = 826 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366] gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366] Length = 869 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 373/900 (41%), Positives = 556/900 (61%), Gaps = 88/900 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + + +E I + I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MAEDL---ENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGN+GS+ Sbjct: 58 LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSI 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R QK A +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG Sbjct: 118 DGDSPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P HN+ E ++ +A IDN +I + LM+ I+ PDFPTGA+I G TG++ A Sbjct: 178 GIAVGMATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE DRE I+VTEIPYQVNKA M+E+ AELV EK++ I++++ Sbjct: 238 FETGRGRIVMRAKAEIEAAK-DREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIK 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL +P+ L ++ Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHY 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S PE AR LM++ Sbjct: 357 FVEHRHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I++E N L Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ IL S+ + IIK EL +K++ RRT IV DM ED I E++V+ Sbjct: 451 MKTIEYLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVI 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR P + YR Q RGGKG G R+EDF+ L I S H +LFF+ G + Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFW 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 +V+ +P G+ ++G+A+ NI+++ + E+I + D+ N Y++ TK G ++ Sbjct: 571 LRVYEIPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIK 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ D++L T ++I++ + G+ +RF +R G Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-G 689 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRG++LA + D+V+ M V A Sbjct: 690 RTATGVRGVTLAHEKDEVVGMIAVDDPGAT------------------------------ 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 IL VSEKG+GKRT D+R++NR GKG++ +V+ ++ Sbjct: 720 ----------------------ILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DK 755 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA+ V D D +++++ G +IR+ V+E+R+ RAT+GV + + ++ + SV RI Sbjct: 756 TGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815 >gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] Length = 822 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 552/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S +N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L V+EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818 >gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] Length = 822 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 372/900 (41%), Positives = 554/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKDELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSESSDDAYLFFTTRHGVVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + SE + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASEKEEVGTEIE 817 >gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] Length = 812 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 382/891 (42%), Positives = 561/891 (62%), Gaps = 87/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V I D + SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ + Y K Sbjct: 2 QVIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKS 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R LI+GQGNFGS+DGD AA RYTE R Sbjct: 62 ARIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEAR 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++D V +IDN + +L+ +++ I+GPDFPTG +I GR GI AY +GRGSI IR Sbjct: 182 LGELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAKH 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HIE G+RE IV+ E+PYQVNKA ++EKI+ELV++K I I+++RDESDR+G RVVIEL Sbjct: 242 HIE-HRGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIEL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A +++ILN LY++T +Q F +NM+A+ +P+ F L+ IL F+ FR+ VV+RRT Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIRRTI 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+ L++R Sbjct: 361 YELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIER-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSEVQ +AIL+++L+RLT L + ++ E + L +I IL Sbjct: 407 ------------FDLSEVQAQAILDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEE 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 S L +IK+E L ++ + R+T IV+ D++ ED I EDMVVT++H GYVKRVPL Sbjct: 455 SVLNNVIKEEFLEIRKKYANERKTEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLK 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGGKG+ + + DF+ D +I H +++ ++ G ++ KV+++P GS ++ Sbjct: 515 TYERQNRGGKGKKALTTYENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSK 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N+++L++ E+I TI+ + + N + F TK+G V+R LS+F I +G Sbjct: 575 GKAIVNLINLDKDEKIQTIIKTSDFD---ENKSLAFFTKNGIVKRTNLSEFKNIRSTGVR 631 Query: 675 AMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ +D DE+++ + +++ + + TK G +RFP+ A+R GRN+ GV+GI+ +G Sbjct: 632 AIVIDKDDELVTAKIVKEDDKYLFIVTKKGMAIRFPVDAVREM-GRNARGVKGITFKIEG 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ + Sbjct: 691 DEVVGALSLRD------------------------------------------------- 701 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++Q IL+VSEKGFGKRT + +R++NR GKG+ A ++ N+ G LV V +N Sbjct: 702 ---EKQEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEENHD 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++L++ KG +IRV ++ I + T+GV + D++VVSV + + Sbjct: 757 LMLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKTPSQKEE 807 >gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 835 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 369/897 (41%), Positives = 547/897 (60%), Gaps = 90/897 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +ID N + ++ +++I++GPDFPTGA+ILG GI+ AY T Sbjct: 182 NIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+V+LNQLY++T LQ F V M+AL +P+ ++ +L ++ Sbjct: 302 NREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLR 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ L++ Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE---- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L++VQ +AI+++RL LTGL R+ + NE L Sbjct: 418 ----------------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMER 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E+L + + RRT I LD+ ED I +D+V+T++ Sbjct: 456 IGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ +++Q RGGKG G+ +ED+V +LF+ STH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT ++P E E + Y+ ATK G V++ ++ Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE---DGKYLFMATKKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ E DI++ TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D+VI M + D Sbjct: 692 VRGMNLSDRDEVIGMQLHTQGD-------------------------------------- 713 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L SEKG GKRT+ +F NR GKG++ +++ + G ++ Sbjct: 714 ---------------YLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE--KTGNVIG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V VN++++I++++ +G +IR+ I I R GV + + + +V S+ ++RE+ Sbjct: 757 VKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAKVRET 813 >gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1087] Length = 826 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 367/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+ IIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKARGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823 >gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] Length = 822 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGVVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817 >gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A] Length = 858 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 357/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + Sbjct: 695 DNDGQDEVVGMICIKD-------------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 LK + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 711 -------LKTESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] Length = 822 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 370/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817 >gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300] gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300] Length = 822 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 370/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817 >gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] Length = 832 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] Length = 833 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] Length = 809 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 363/892 (40%), Positives = 528/892 (59%), Gaps = 84/892 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I V I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+ +K + K Sbjct: 2 ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GE +GK+HPHG+ A+YDAL RMAQD+S+R LIEGQGNFGS+DGD AA RYTE Sbjct: 62 SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A LL D+ KDTVDF+PN+DGS +EP VL A++PN+LVNG GIAVGMATNIP H Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV ++D+P+ + LM+ I+GPDFPTGA ++ + Y GRGS+ IR Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ R IV+TE+PYQVNKA +++KIAELV+EK+I IAD+RDESDR+G RVVIE Sbjct: 242 HTIEEVRK-RSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVIE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A+ V+LN+LY+ T LQ+ F+ NM+AL +P+ L L+ F+ FR EV++RRT Sbjct: 301 LKRDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 YLL KA R H+L GL A+ N+D VV++++ +P+P+ A L ++ Sbjct: 361 AYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREK------------- 407 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q +AIL+++L RLTGL R+ I E +L E ++ S Sbjct: 408 -------------FELSEAQAKAILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMES 454 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +IK+E+ + ++ RRT+IV +++ E I E++++ ++H G+V RV Sbjct: 455 DQEQRRLIKEEMAQIIEKFGDQRRTKIVSKESEIDIESMIEDEEVIIFLTHKGFVARVSA 514 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q R G G G+ R+ DFV D+ S+ +L F++ G VY K + +P + Sbjct: 515 GTYRTQSRSGTGVRGIKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPS 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG ++ N L G I + + ++ S + V F T+ G V+R L +F +G Sbjct: 575 RGHSIRNFLPGMAGNEIVSRIIPVKEFSLNKD--VFFVTQRGYVKRTPLKEFSNPRSTGI 632 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L+ D ++ V + +++I+L +K G+ ++FP++ +R GRN+ GVRGI L D Sbjct: 633 NAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQM-GRNARGVRGILLDPDD 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V++ A+V D Sbjct: 692 SVVAAAVVEPEDR----------------------------------------------- 704 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 F+L V+EKG+GKR +F + R GKG+ A +S+ + G + + D++ I Sbjct: 705 -----FLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSE--KTGKVADATTLKDDEPI 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ILVS KG +IRV +I + R T+GV I A+D+ VVSV ++ E+E ++ Sbjct: 758 ILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809 >gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868] gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868] gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Riemerella anatipestifer RA-GD] Length = 841 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 367/904 (40%), Positives = 544/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV NKKY Sbjct: 4 EGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 +K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA RYT Sbjct: 64 LKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K + +L DL K+TVDF+ N+D S QEP VL + PN+LVNG GIAVGMATN+ Sbjct: 124 EARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMA 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E VD A IDN +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+R Sbjct: 184 PHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVLR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E+ +R I+VTEIPY VNKA M+ + +ELV+E +I I ++RDESDR+G RVV Sbjct: 244 AKVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELK A +V+LN LY+YT+LQ+ FSVN +AL +P++ L I+ FV R E+V+R Sbjct: 303 YELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVIR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KAR+RAH+L G LD+ + IIR S P+ A+ L+ Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q +AIL+LRLARLTG+ D IR+E ++ I + Sbjct: 415 ------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDLE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL++ +R IIK ELL VK++ RRT I +M ED I E++V+T+SH GY+ Sbjct: 457 DILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G Y +V+ +P Sbjct: 517 KRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + + D +YVV TK+G +++ L + Sbjct: 577 GSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYS 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G A+++ D++L ++I++ TK G+C+RFP R GR S+GVRG Sbjct: 637 RPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAV-GRTSIGVRG 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL D+VI M +V + Sbjct: 696 ISLEDNDEVIGMIVVNDME----------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 715 ----------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQS 762 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V D + +++++ G IR+ V+ +R+ R T+GV + + ++ + +V ++ + V++ Sbjct: 763 VVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDE 822 Query: 907 ESTE 910 E E Sbjct: 823 EIEE 826 Score = 84.1 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V++ VV ++ G +K+ L Y R G + +R++D + + + ++ ++ Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPRTNG--IHAIEIREDDQLLGARLTNGNSEIMIA 669 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + + G + +SL + + ++ + N V+ + Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVND----MENETVLVVS 722 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R + D+ NR GK + L+ +++++++ ND+++ K G +R Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +RV GRN+ GVR I+L D++ ++A V DE I + + + Sbjct: 783 VDNMRVM-GRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841 >gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 833 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4] gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4] Length = 852 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 367/906 (40%), Positives = 562/906 (62%), Gaps = 88/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 EAESTE 910 E + + Sbjct: 822 ENSNAD 827 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T ND+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + + + + T Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844 Query: 774 SLKNDSSV 781 + +S Sbjct: 845 IAEANSEE 852 >gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1] gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22] gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1] gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22] Length = 858 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645] Length = 833 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 363/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + +L ++E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N+ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805 >gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] Length = 829 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 368/905 (40%), Positives = 554/905 (61%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNK+ +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ DE Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 906 AESTE 910 + E Sbjct: 818 EATDE 822 >gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] Length = 880 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 392/899 (43%), Positives = 546/899 (60%), Gaps = 67/899 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVVTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L + ERIT Sbjct: 606 LPQASRTARGKPIVNILPLEENERITA--------------------------------- 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IL V + E I + T G + + FA S G+ Sbjct: 633 ------------------ILPVSEFSPEKFIFMATGDGTVKKTSLDQ---FANVRSNGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D +I + I D D D + + T+ + Sbjct: 672 AVNLREDDSLIGVDI---TDGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADD 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G++V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GSVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E E D Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESD 845 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 156/430 (36%), Gaps = 29/430 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELEAVR--DGFGDARRTEITAAIHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D+++LI D Y Q + E + G ++ E + + Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKY----QLLSDYEAQRRGGKGKSATKMKEEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R IV L E+E E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +R++D + + I + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLREDDSLIGVDITDGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + ++ + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGSVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + ++ + + ++ Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESDLPEGEELEGQEGEVSEAAPESTPDA 870 Query: 774 SLKNDSSVEG 783 + D+ + Sbjct: 871 EVDTDADEQE 880 >gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] Length = 915 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 371/898 (41%), Positives = 543/898 (60%), Gaps = 30/898 (3%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN Sbjct: 6 DHRFAKETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWN 65 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R +L++GQGNFGSVDGD AA Sbjct: 66 SSYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAM 125 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K AH +L D+ +DTV+F PNYDGS QEP+V+ R+P++L NG GIAVGMAT Sbjct: 126 RYTEIRMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMAT 185 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLG+ VD C+ ++ +PD +DAL++ I+ PDFPTGA I G G++ Y TGRG + Sbjct: 186 NIPPHNLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIYGLAGVREGYRTGRGRV 245 Query: 249 VIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 V+RG +HIE G+RE I++ EIPYQVNKA ++EKI ELVREK + I+DLRDESD+ Sbjct: 246 VMRGKTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKS 305 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL F+ R Sbjct: 306 GMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQILAEFLRHRR 365 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KAR H+ G A+A++N+D ++++I+ S + A+ +L+ R W + Sbjct: 366 EVVTRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGL 425 Query: 427 IKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + D++ D +G YLS++Q AIL + L LTGL +D I + Sbjct: 426 VGDMLSRTDLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILAD 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 ++ +I + LDIL+ R+ II EL+ +K PRR+ I D+ DED I Sbjct: 486 YKTIMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDPRRSEINPFGGDIADEDLIPPR 545 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH ++ F++ G Sbjct: 546 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG 605 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + KV++LP G +RG+ + N++ L++ E+++ I+P + + YV FAT G Sbjct: 606 RCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFP---EDEYVFFATAMGV 662 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ +LS F +++ G A+ L D ++ V + NDI+L + LG+ +RF + Sbjct: 663 VKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIRFNE-----Y 717 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 R+S GD + D + + KH SG + + Sbjct: 718 WERSSD-----DEETGDDNDTEISGSQEDDNAESAPISGKHGVRPSGRGSGGLRGMRLPE 772 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 N V E + E +LT + G+GKRT + N+ G+G A + + N Sbjct: 773 NGRIVSLI---TFAPECEQSELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGERN 829 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LVA V+++D ++L++ G LIR V +IR RA GV + + + E +VS+ Sbjct: 830 --GDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSL 885 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 143/411 (34%), Gaps = 51/411 (12%) Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457 DE++ I +P + D+ +++ ++ G T ++ Q + Sbjct: 512 DELIEIKTNFGDPRRSEINPFGGDIADEDLIPPREMVVTLTHG-GYIKTQPTTDYQAQRR 570 Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR- 516 D I + + C IK L R Sbjct: 571 GGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG----RCHWIKVYKLPEGGRNSRGRP 626 Query: 517 -----RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571 + E + + ++ V + +G VK+V LS ++ + G + + Sbjct: 627 INNVIQLDENEKVSAILPVRDFPEDEYVFFATAMGVVKKVQLSAFKNVSKVG--IKAIAL 684 Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFV-----YKEKVWRLPIG----------------- 609 ++ D + + S ++ FS+LG Y E+ Sbjct: 685 KEGDSLVGVARTSGRNDIMLFSNLGKAIRFNEYWERSSDDEETGDDNDTEISGSQEDDNA 744 Query: 610 -----------SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 P RG + + L + RI +++ F E + L V+ AT +G + Sbjct: 745 ESAPISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAP-ECEQSELQVLTATANGYGK 803 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++ + + N+ G+ + +++ + ++ ++ +D++L T G +R + IR Sbjct: 804 RTPIASYSRKNKGGQGNIAINTGERNGDLVAATLVSESDDLMLITSGGVLIRTKVEQIRE 863 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR + GV+ I+L +G+ ++S+ V + D + + + Sbjct: 864 -TGRAAAGVKLINLDEGETLVSLERVAEEEEDEAQAAETQTSAESPSQEQG 913 >gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] Length = 852 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 366/906 (40%), Positives = 562/906 (62%), Gaps = 88/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL E++D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 EAESTE 910 E + + Sbjct: 822 ENSNAD 827 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T ND+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + + + + T Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844 Query: 774 SLKNDSSV 781 + +S Sbjct: 845 IAEANSEE 852 >gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323] gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323] gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] Length = 829 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 369/905 (40%), Positives = 554/905 (61%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ DE Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 906 AESTE 910 + E Sbjct: 818 EATDE 822 >gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14] Length = 849 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 362/907 (39%), Positives = 553/907 (60%), Gaps = 90/907 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ K+TVDF PN+D + +EP VL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +ID+ D ++ ++EI++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ L+ +L+ ++ Sbjct: 302 NREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQPKVMNLLEMLQYYLR 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E+VV RRT+Y LNKA++RAH+L GL IA+ N+DEV+RIIR S N + A+ EL++R Sbjct: 362 HQEDVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+VQ +AI+++RL LTGL R+ I E L + Sbjct: 419 -----------------------FGLSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ + LLG+IK+E+L + ++ RRT+I D+ ED I RE++V+T++ Sbjct: 456 IEEYKAILADKKLLLGVIKKEILVIAEKYGDDRRTKIGFDEFDISMEDLIPRENVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ ++D++ +LFI ++H ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT I+P E E Y+ AT+ G V++ + Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYE---EGKYLFMATEKGLVKKTPIQ 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L D+++ V+ DI L TK G C+RF + +R GR S+G Sbjct: 633 DYANVRKTGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L D VI M I Sbjct: 692 VRGMNLTDNDVVIGMQI------------------------------------------- 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + + +L VSE+G GKRT +F NR GKG++ +++ + G +V Sbjct: 709 ----------ESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + V+++ +I++++ +G +IR+ ++I + R T GV + + +++ V SV ++R++ Sbjct: 757 MKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVAKVRKASAE 816 Query: 904 DEAESTE 910 + E E Sbjct: 817 IDGEEVE 823 >gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] Length = 822 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817 >gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] Length = 862 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 374/892 (41%), Positives = 537/892 (60%), Gaps = 62/892 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG +A+I NP++ L++II GPDFPTG ILGR+GI +AY TGRGSI + Sbjct: 184 PPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DRE I++T++PYQ NKAA++E+IA+LV EKRI I+D+RDESDR Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L F+ FR Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRI 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + +A+ EL+Q Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS VQ AIL+++L RLT L + I E L ++I + Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II++EL +K TPRRT IV ++ D D I E ++ ++ G Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ+R +G++ ++D+D V H VLFFS G VY +++ Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG ++ +L + + E+IT+I+ E ++++V T G +++ LS F Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSEFT---EDVFLVMLTHKGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V +E+ I+L T+ G + F +R GR + GV Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM ++ + T I D V N Sbjct: 694 KAMKLKKGDELISMDVLP-----------------------AQVTAGIADAAEDEDVLDN 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +EE +E +IL ++ G+GKR FR+ R+G G+RA ++ L ++ Sbjct: 731 ETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKF--KSKTDCLASL 788 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 VN D++++VS++G +IR V+ I + SRA GV + D+ + +V Sbjct: 789 HVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAAVAL 840 >gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2] gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 858 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida] Length = 874 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 390/907 (42%), Positives = 548/907 (60%), Gaps = 70/907 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + +E I+VTEIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VI Sbjct: 246 AEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RR Sbjct: 306 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W ++ +++ Sbjct: 366 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 425 Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + D YL+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 AELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L+ Y AQRRGGKG++ M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 546 EGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P Sbjct: 606 QLPLASRTARGKPIVNILPLEENERITAILP----------------------------- 636 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVG 723 V+ + + + T G + P++ R S G Sbjct: 637 ----------------------VKEYEADKFVFMATADGTVKKTPLTDFSRPR----SAG 670 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + ++L D +I + I D + D + + T+ Sbjct: 671 IIAVNLRNEDTLIGVDI---TDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAAGVRGIKLA 727 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 728 ESDNVVSLIVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVG 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V + D+ +++++ GTL+R V E+ R T+GV + T ++E+VV ++RI E + Sbjct: 786 AVQVLEGDEFMMITNGGTLVRTRVREVSRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDED 845 Query: 904 DEAESTE 910 D E E Sbjct: 846 DIIEDAE 852 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 152/423 (35%), Gaps = 29/423 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +++ ARR + + + Sbjct: 470 EHEKILDEYKALLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTEITAATHD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D++DLI+ D Y +V T + R + R + + L + Sbjct: 528 IDLEDLINQEDVVVTLSHEGYVKY--QVLTDYEAQRRGGKGKAATRMKDEDFIERLLVAN 585 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 + S + +K L + T R IV L E+E + Sbjct: 586 THDTILCFSTRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVKEYEAD 643 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 V + G VK+ PL+ + R G V +R+ED + + I + ++ FS G Sbjct: 644 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRNEDTLIGVDITDGNNDIMLFSKAG 701 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A G I ++ N+ V+ T++G Sbjct: 702 KVVRFNEGQVRAMGRTAAGVRGI---------KLAESDNVVSLIVPHNDGDVLTVTENGY 752 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L ++ +R+ + + + ++ + ++ ++ T G VR + + Sbjct: 753 GKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTLVRTRVREV 812 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I + ++V+ + + D D + + + + + Sbjct: 813 -SRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDDIIEDAEITEVENTETPAADSEQGDS 871 Query: 774 SLK 776 S + Sbjct: 872 SEE 874 >gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108] gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108] Length = 809 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 367/894 (41%), Positives = 560/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ + Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISK--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I + D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIVQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +R GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V+ ++ G++V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGSIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D+D+I++ S +G IR+ V+++ + R T+GV + D +V S+ RI+ E Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809 >gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] Length = 837 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 358/900 (39%), Positives = 549/900 (61%), Gaps = 90/900 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ K+TVDF PN+D + +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E++ V + +N + +D +++I++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R +++IE + + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKHYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LN+A +RAH+L GL IA+ N+DEV+RIIR S N +TA+ ELM R Sbjct: 362 HQEEVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMAR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L+EVQ AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FDLTEVQASAIVDMRLRALTGLEREKLEAEYEELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E+L + ++ RRT I D+ ED I RE++V+T++ Sbjct: 456 IGELKAILADRKLLLGVIKKEILVISEKYGDERRTSIGFDEFDISMEDLIPRENVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +GY+KR+ + +++Q RGGKG G+ + D+D++ +LFI +TH ++FF++ G VY+ K Sbjct: 516 KMGYIKRMSMDTFKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A+IN+L L E+IT ++P E E + Y++ AT+ G V++ + Sbjct: 576 YEIPEASRTARGTAIINLLQLMPDEKITAMIPIREYE---DGQYLLMATEKGLVKKTPIK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L D+++ V+ E D++L TK G C+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAIVLREDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRP-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L D+VI M I Sbjct: 692 VRGMNLGDHDEVIGMQISDQG--------------------------------------- 712 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++L SEKG GK T +F NR GKG++ +++ + G +V Sbjct: 713 --------------KYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITE--KTGDVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + V+++ +I++++ +G +IR+ ++I + R T GV + + ++E+V S+ ++R++ Sbjct: 757 MKAVDEDSEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIAKVRKASAE 816 >gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] Length = 858 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] Length = 829 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 371/905 (40%), Positives = 553/905 (61%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T LQ+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE++RIIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ DE Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 906 AESTE 910 + E Sbjct: 818 KSTDE 822 >gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597] gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597] Length = 822 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 557/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817 >gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] Length = 843 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 355/902 (39%), Positives = 537/902 (59%), Gaps = 85/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE IT V+++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K Sbjct: 3 EELSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ K+TVDF+ NYDG+ +EP +L AR+PN+LVNG GIAVGM TN Sbjct: 123 YTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++N D LME + GPDFPTG +++G++GI+ AY TG G+I+ Sbjct: 183 IPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVMGKSGIRKAYETGHGTII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G R Sbjct: 243 LRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+++R SA V+LN LY+ T +Q+ F NM+A+ P+ L IL+ ++ +EEV+ Sbjct: 303 VVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLGLKEILQHYLVHQEEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 363 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLM----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ + +E N + I + D Sbjct: 412 ---------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ R R+ II +ELL +++ RRT ++ G + +++ ++ E+ V+ T++H GY+ Sbjct: 457 ILAHRERINEIIYKELLEIQERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S ++ Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + +P Sbjct: 517 KRMATSEFKTQNRGGRGIQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFI 666 S A+G +IN+L ++ GE I ++ D N Y+ F T +G +R +++F+ Sbjct: 577 YSRTAKGIPVINLLGISSGENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFL 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++V E +I++ T G V F + +R GR++ GVRG Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSM-GRSATGVRG 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ AI+ Sbjct: 696 IRLRDEDYVVGSAILKP------------------------------------------- 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L ++EKG+GK+T + ++ I R GKGI+ ++++ N G L + Sbjct: 713 ----------ESKVLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKN--GPLAGLVT 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + ++L++D+G +IR VN + RAT GV + T ++ +V ++ + E+ + DE Sbjct: 761 VEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDEAPVDDEN 820 Query: 907 ES 908 ++ Sbjct: 821 QT 822 Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 17/235 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G KR P++ + R G + +++ D V ++ I +++ + G+ K Sbjct: 622 TLNGVTKRTPVAEFLNIRSNG--LKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFK 679 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G I + + + P V+ T+ G ++ Sbjct: 680 EADVRSMGRSATGVRGIRLRDEDYVVGSAILKP---------ESKVLVITEKGYGKQTPA 730 Query: 663 SDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 S++ I G +K + E + + T D++L T G +RF ++ + G Sbjct: 731 SEYP-IKGRGGKGIKTANITEKNGPLAGLVTVEGTEDVMLITDRGVMIRFDVNNV-STTG 788 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R ++GV I + +V +MAIV A D + + +A+ ++ + Sbjct: 789 RATLGVHVIKTDENSKVATMAIVDEAPVDDENQTQTPATEAAETESVTVEESSEE 843 >gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] Length = 874 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 357/901 (39%), Positives = 518/901 (57%), Gaps = 77/901 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I V I ++++ +YL Y+++VI+ RA+PD+RDGLKP RRI++ M ++ + Sbjct: 2 SETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSH 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I+G+ G YHPHG +Y L R+AQ W +R LIEGQGNFGS+DGDPPAA RY Sbjct: 62 FRKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RLQK +L +L KDTV+FR NYD + QEP V AR+PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+GEV D +A+IDNPD+ L+E I+GPDFPTG ILG GI+ + TGRG I++ Sbjct: 182 PPHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE D EQI++ IPYQ++ + ++E++ ELV++K+I I+D+RDES R G R+ Sbjct: 242 RGETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A V+ N LY+YT LQS F V + L P+ + +L+ F+ FR EVV+ Sbjct: 302 VIQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGVPQVVNMKEMLQNFIDFRHEVVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L A++R H+L GL IA+ NLDEV+ +IR S P A L ++ Sbjct: 362 RRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL RLTGL RD I E L I I ++ Sbjct: 412 ----------------FGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTEL 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549 + + + +IK+E ++D+ R T I+ ED I E +VVT++H GYVK Sbjct: 456 VEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNMEDLIADEMVVVTITHDGYVK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y+ Q RGGKG S +++EDF+ LF+ STH+ +L F+ G Y KV+ +P Sbjct: 516 RLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARGKA++N++ L +G+RI + + N +V T++G V++ L+ F Sbjct: 576 SRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQN---IVMCTRNGLVKKTPLTAFSHPR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+KL DE++ C +DILL T G+C RF S IR R S GV+GI L Sbjct: 633 SIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMR-RFSQGVKGIRL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD VISM I ++++ Sbjct: 692 RNGDYVISMTI-------------------------------------------ATAQDQ 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + K IL +SEKG+GKR+ + ++ R G+ ++ N G L A+ V D Sbjct: 709 LENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERN--GYLAALMLVRD 766 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +D +++++ G +IR V+EI + R T GV + + A ++ V + + SE +E+ Sbjct: 767 DDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLV-HSEPDEESLDK 825 Query: 910 E 910 E Sbjct: 826 E 826 Score = 81.4 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 7/238 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E +V + G VK+ PL+ + R G + +R+ D + D I +L Sbjct: 605 FHPEQNIVMCTRNGLVKKTPLTAFSHPRSIG--IKAIKLREGDELIDARICEAGDDILLA 662 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFA 651 + G + + ++G I + + + +T + E+ N+ ++ Sbjct: 663 THDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIATAQDQLENGKPNSSTILAI 722 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRF 708 ++ G +R+ +S + R + L + + + ++D+++ T+ G +R Sbjct: 723 SEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLVRDDDDLMIITQGGMIIRQ 782 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +S I GRN++GVR I+LA D V +++V + + + Sbjct: 783 RVSEI-SVVGRNTLGVRLINLAPNDVVRDISLVHSEPDEESLDKEVETLKAKPASNLE 839 >gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] Length = 815 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 365/898 (40%), Positives = 549/898 (61%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ K+TVDF NYD S +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM R Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------YELSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQRRGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + ++ Y+ F T++G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAE--HDDHSYLFFTTRYGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ TK+G VRF + +R GR + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNM-GRAATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ +++ Sbjct: 693 TNDYVVGASVIS------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKG++ ++++ N G L + VN + Sbjct: 705 -----DNQEVLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKN--GPLAGLMAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + ++++++ G +IR V I RAT GV + K ++V+ + + E Sbjct: 758 EDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVNEE 815 >gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49] gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49] Length = 840 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 365/898 (40%), Positives = 553/898 (61%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++G+ + Sbjct: 3 DGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+Q+ + +L D+ K+TVD + N+D + EP VL R P +L+NG GIAVGMATN+P Sbjct: 123 EARMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G +A ID+ +I +D LME I+ PDFPTG +I G G+K+A+ TGRG +V+R Sbjct: 183 PHNLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIYGYDGVKDAFHTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ RE I+V+EIPYQVNKA M++K A+LV EK+I IA++RDESDR G R+V Sbjct: 243 AKASFEEVQ-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+YT+LQS FSVN +AL +P+ L ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+YLL KA +RAH+L GL IA N+DEV+R+IR S N + AR L++ Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIE------------ 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E L I + DIL Sbjct: 410 --------------AFKLTEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIADYKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +++ R + IIK+ELL V+ + RR+ I D+ D I E +V+T+SH GY+KR Sbjct: 456 ANKERRMNIIKEELLEVQRKYGDDRRSVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + ++ ++L K G+ +RF S R GRN+ GVRGI L Sbjct: 636 TNGINAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPM-GRNASGVRGIRL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M + +++ Sbjct: 695 ADDNDEVVGMIAINDLESE----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VS+KG+GKR+S D+RI+NR GKG++ +V++ + G LVA+ V Sbjct: 714 -----------ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTE--KTGQLVAIKNVI 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D+D +++++ G IR+ V+ +R+ RAT+GV + +D+ + +V ++ + E E Sbjct: 761 DSDDLMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKDENEVED 818 >gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] Length = 817 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 374/898 (41%), Positives = 550/898 (61%), Gaps = 84/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S +N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + I++++D G +IR V I R T+GV + R+V+ + EI E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEIDQVTED 816 >gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] Length = 858 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAGE 825 >gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A] gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A] Length = 855 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 367/905 (40%), Positives = 562/905 (62%), Gaps = 87/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821 Query: 906 AESTE 910 +T+ Sbjct: 822 NSNTD 826 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + DE + + Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 844 Query: 774 SLKNDSSVEGN 784 S + Sbjct: 845 SDLTAEANSEE 855 >gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL] gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL] Length = 809 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 362/894 (40%), Positives = 562/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I+VTE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++E++ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+QR Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +++Q +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTDIQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+ I + D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R++DFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 R+GK A+ L D ++ V+ + ++++L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V+ ++ G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVT--DKTGKIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I++ S +G IR+ ++++ + R T+GV + ++ +V S+ RI+ E Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIKVSSIARIKAEE 809 >gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] Length = 809 Score = 866 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 362/894 (40%), Positives = 563/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I++TE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++E++ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+QR Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++VQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FKFTDVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+ I + D E+E+ I ++ VVT++H GY+ Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R++DFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ +++ E+IT M + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQISKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++++L + G CV F + +RV GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVM-GRLAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++ M Sbjct: 691 LEEGDFIVGME------------------------------------------------- 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L V+E GFGKR+ ++R + R KG+ V+ ++ G +V + VN Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I++ S +G IR+ ++++ + R T+GV + ++ RV S+ RI+ E Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809 >gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] Length = 854 Score = 866 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 370/905 (40%), Positives = 553/905 (61%), Gaps = 87/905 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF+ N+D + QEPVV+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG I G +G+++AY TGRG +++ Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVIM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE ++IVV EIPY VNK ++E IA LV EK+I I+ + DESDR+G R+ Sbjct: 242 RAKAEIESHPT-HDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R EV++ Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIQLFVEHRHEVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMER---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FQLSEVQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + +IK EL+ VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LVNEELCKKVIKDELIEVKEKYGDKRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIDADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M + Sbjct: 694 LDEDGQDEVIGMICIKDPLK---------------------------------------- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + I+ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905 V D + +++++ G IR+ V ++RI RAT+GV + K ++++ SV ++ SE +E Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVT-SETEEE 819 Query: 906 AESTE 910 E Sbjct: 820 GSVAE 824 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 106/250 (42%), Gaps = 12/250 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A G I L + + + ++ + ++ +++G Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGQDEVIGMICIKDPL----KETIMVVSENGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I L K DQ+ S+ V + + A + Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVTSETEEEGSVAEGEETAPASDITPDIVPSDDM 844 Query: 774 SLKNDSSVEG 783 + D + + Sbjct: 845 IQETDETDKN 854 >gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 881 Score = 866 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 371/878 (42%), Positives = 534/878 (60%), Gaps = 45/878 (5%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K AR+ G+V+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ K AH LL DL KDTVD+ Sbjct: 61 YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ EVV+ C+A DNP+I + Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIP 272 + LME I GPDFPTG +I G++GI +AY TG+G + IRG H E+ R IV TEIP Sbjct: 181 EGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIP 240 Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332 YQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+LKRG +A+V++N L+ T Sbjct: 241 YQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQ 300 Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392 L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT + L KAR+R H+L GL + Sbjct: 301 LENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTV 360 Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS--------- 443 A+AN+DE++ I+ S NP AR L+ W + L++ S Sbjct: 361 ALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRP 420 Query: 444 ----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 D LS Q AILELRL RLTGL +D + E + +I E IL+ + L+G Sbjct: 421 FGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMG 480 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I++EL V + RRT IVE +D ED I E +V+TVS GY K PLS Y+AQ Sbjct: 481 VIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQ 540 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ KV+ +P S A+G+ ++ Sbjct: 541 RRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIV 600 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L L+ E +T I+P E N YV AT G V+R +L F I +G A++L+ Sbjct: 601 NLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKRVELEQFANIRSNGLRAIELN 657 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 D ++ V I+L + G+ +RF + +R GR + GVRG+ +S A Sbjct: 658 EEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTAKGVRGMR-------VSFA 709 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 ++ D D + + +DS+ +S + + Sbjct: 710 SSTLSEEDADV------------------ENDDSDDNDDSADSSLVSRIVSLVVVPETGE 751 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L S G+GKRT DF R GKG+ A S+ N G LV +++ +++L+SD Sbjct: 752 VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GELVGAVSIDETKELLLISDG 809 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GTL+R E+ + R +GV + +++E +V V I Sbjct: 810 GTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 847 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G VKRV L + R G + + +ED + + I + ++ F Sbjct: 620 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 677 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633 S+ G + + A+G + + + + Sbjct: 678 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 737 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690 V+ A+ +G +R ++DF R G IA+K E++ + Sbjct: 738 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 797 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++LL + G VR + + GRN+ GVR I L++ + ++ + + + + + Sbjct: 798 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 856 Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775 + + E+ + Sbjct: 857 LEGEVDTTETDSEEAVSNNEDTSEE 881 >gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] Length = 840 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 377/908 (41%), Positives = 555/908 (61%), Gaps = 91/908 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ NK + Sbjct: 3 NGEQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVDF N+D + +EP VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G A I+N DI+++ LM I+ PDFPTG +I G G+++A+ TGRG +V+R Sbjct: 183 PHNLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGIIYGYEGVRDAFMTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E+ + RE I++TEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V Sbjct: 243 AKSSVEEVN-GRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ + +V+LN L+++T+LQS FSVN +AL +P+ L I+ FV R EVV+R Sbjct: 302 YILKKDSLPNVVLNTLFKHTALQSTFSVNNIALVKGRPQMLNLKDIIYNFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKYLL KA +RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 362 RTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + L I I++ DIL Sbjct: 411 ---------------FQLSEIQVKAIVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SS R + II+ ELL +K++ RR+ I D ED I E +V+T+SH GY+KR Sbjct: 456 SSEDRRMEIIQTELLEIKEKYGDDRRSEINMVGGDFSMEDMIPNESVVLTISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL Y+ Q RGG G+ RDEDF+ +F + H +LFF+ G + +V+ +P GS Sbjct: 516 PLKEYKIQNRGGVGQKASTTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+++L+ +RI + +E NN YV+ TK G V++ L + + Sbjct: 576 TSKGRAIQNLMNLDPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+LS EN ++L + G+ +RF IR GR + GV+GI+L Sbjct: 636 INGINAISVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPM-GRGAAGVKGITL 694 Query: 730 -AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 ++ D+VI M V + Sbjct: 695 ASEKDEVIGMICVKNP-------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842 +E+ +L VSEKG+GKRT D +RI+NR GKG++ +S+ + G LV Sbjct: 711 -------QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISE--KTGQLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A+ V+D D ++++ G IR+ V++IR R+T+GV + S D+ + +V +I +E Sbjct: 762 AMKTVHDEDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKII-NED 820 Query: 903 VDEAESTE 910 DE E + Sbjct: 821 EDETEIND 828 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 19/258 (7%) Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576 R + ++ +ED I V+ V+ G VK+ L Y R G + + +RD D Sbjct: 593 RINAFILVENLSNEDYINN-HYVLMVTKKGQVKKTILEQYSRPRING--INAISVRDGDE 649 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 + + V+ G + + P RG A + ++L + M Sbjct: 650 LLSAVLTDGENQVMLGLRSGKALR---FEEKHIRPMGRGAAGVKGITLASEKDEVIGMIC 706 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLS--------DFIQINRSGKIAMKLDSRD-EILSV 687 ++ V+ ++ G +R + G + + + +++++ Sbjct: 707 VKNP---QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVAM 763 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 +T E+D+++ K G +R +S IR GR++ GVR ISL D++ ++A +++ D D Sbjct: 764 KTVHDEDDLMIIKKSGVAIRMSVSDIRTM-GRSTQGVRLISLKGDDEIAAVAKIINEDED 822 Query: 748 YDERICYMKHMSAQRRLI 765 E + + + Sbjct: 823 ETEINDDLDVTNGETTEE 840 >gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066] gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066] gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03] Length = 811 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 373/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S +N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++D G +IR V I R T+GV + R+V+ + EI Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ +Q + + RF ++ R S + + L Sbjct: 382 IALDHLDEVITIIRNSQTD---AEAQAELMARFELTE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ + ++ D + ++ + + + + + G + Sbjct: 433 ERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADARRTELMVGEVVSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + +V+ + Sbjct: 493 EDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D + +++KG + R+ EI R KG V + + E + +V + E D Sbjct: 550 THDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTVINAKSDEASDN 609 >gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6] gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6] Length = 822 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S E A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDESESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF S +R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817 >gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM] Length = 841 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 367/904 (40%), Positives = 543/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV NKKY Sbjct: 4 EGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 +K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA RYT Sbjct: 64 LKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K + +L DL K+TVDF+ N+D S QEP VL + PN+LVNG GIAVGMATN+ Sbjct: 124 EARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMA 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E VD A IDN +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+R Sbjct: 184 PHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVLR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E+ +R I+VTEIPY VNKA M+ + +ELV+E +I I ++RDESDR+G RVV Sbjct: 244 AKVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELK A +V+LN LY+YT+LQ+ FSVN +AL +P++ L I+ FV R E+V+R Sbjct: 303 YELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVIR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KAR+RAH+L G LD+ + IIR S P+ A+ L+ Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q +AIL+LRLARLTG+ D IR+E ++ I + Sbjct: 415 ------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDLE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL++ +R IIK ELL VK++ RRT I +M ED I E++V+T+SH GY+ Sbjct: 457 DILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G Y +V+ +P Sbjct: 517 KRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + + D +YVV TK+G +++ L + Sbjct: 577 GSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYS 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G A+++ D++L ++I++ TK G+C+RFP R GR S+GVRG Sbjct: 637 RPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAV-GRTSIGVRG 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL D+VI M +V + Sbjct: 696 ISLEDNDEVIGMIVVNDME----------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 715 ----------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQS 762 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V D + +++++ G IR+ V+ +R+ R T+GV + + ++ + +V ++ + V++ Sbjct: 763 VVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDE 822 Query: 907 ESTE 910 E E Sbjct: 823 EIEE 826 Score = 84.1 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V++ VV ++ G +K+ L Y R G + +R++D + + + ++ ++ Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPRTNG--IHAIEIREDDQLLGARLTNGNSEIMIA 669 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + + G + +SL + + ++ + N V+ + Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVND----MENETVLVVS 722 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R + D+ NR GK + L+ +++++++ ND+++ K G +R Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +RV GRN+ GVR I+L D++ ++A V DE I + + + Sbjct: 783 VDNMRVM-GRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841 >gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] Length = 845 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 390/894 (43%), Positives = 563/894 (62%), Gaps = 90/894 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ +++ I V I EM+NS++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM +G + Sbjct: 5 NDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPD 64 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCA GEV+GKYHPHG+AA+YD++ RMAQD+SLR L++G GNFGSVDGDPPAA Sbjct: 65 KAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAM 124 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + ++ D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMAT Sbjct: 125 RYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMAT 184 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP NL EV+DG V VI+ P +D L +II+GPDFPT +I+G++GI++AY TGRG I Sbjct: 185 NIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRI 244 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R V++IE+ S ++++IVVTE+PYQVNKA ++EKIA+LV+EKRI +I+DLRDESDR G Sbjct: 245 IMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGM 304 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-----YKPERFTLIGILKAFVA 363 R+VIELKR A+A+++LNQL+++T +Q FSVNM+AL ++P L + +V Sbjct: 305 RIVIELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVD 364 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +++V+VRRT++ L+KA RAH+L GL IA+ NLDEV+RIIR S N A+ LM+R Sbjct: 365 HQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMER--- 421 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 SE Q +AI+++RL RLT L R+ + E L + Sbjct: 422 -----------------------FSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAK 458 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IK D+L++ +L IIK+EL +K + RRT+I+ D + ED I +D V+T++ Sbjct: 459 IKYYKDVLANEFMVLDIIKEELGEIKGKFGDERRTKIIPDETDFDVEDLIEEQDSVITLT 518 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVKR+P Y++QRRGGKG G+ R+EDFV +LF STH ++FF++ G VY+ K Sbjct: 519 HFGYVKRLPTDTYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKT 578 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P QA+G A++N+L L+Q E++TT++P E + +Y++ ATK+G V++ L Sbjct: 579 YEIPEAGRQAKGTAIVNLLQLDQEEKVTTVIPIKEYK---EGMYLILATKNGVVKKTDLM 635 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ I + G A+ L DE++ V DILL TK G +RF +R GR S G Sbjct: 636 EYDHIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPL-GRVSQG 694 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L D VI M + + + Sbjct: 695 VRGIKLDDDDVVIGMGVFIEDTS------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L V+E+GFGKRT ++++ R GKGI V++ + G + Sbjct: 718 ----------------LLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTE--KTGKIAG 759 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + VN+ D ++L+S GT+IR+ VN+I + RAT+GV + + +V + RI Sbjct: 760 MKLVNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVYLVGIARI 813 >gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] Length = 852 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 367/906 (40%), Positives = 561/906 (61%), Gaps = 88/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 EAESTE 910 E + + Sbjct: 822 ENSNAD 827 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T ND+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + + + + T Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844 Query: 774 SLKNDSSV 781 + +S Sbjct: 845 IAEANSEE 852 >gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311] gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311] Length = 811 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 373/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S +N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++D G +IR V I R T+GV + R+V+ + EI Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ +Q + + RF ++ R S + + L Sbjct: 382 IALDHLDEVITIIRNSQTD---AEAQAELMARFELTE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ + ++ D + ++ + + + + + G + Sbjct: 433 ERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFADARRTELMVGEVVSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + +V+ + Sbjct: 493 EDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D + +++KG + R+ EI R KG V + + E + +V + E D Sbjct: 550 THDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTVINAKSDEASDN 609 >gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564] gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564] Length = 822 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 368/894 (41%), Positives = 557/894 (62%), Gaps = 85/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + +++++D G +IR V I R+T GV + +D ++V+ + +E + Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEE 811 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + + E + ++ ESE D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTI-INVESERSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 822 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 372/900 (41%), Positives = 552/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 G LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 409 -------------GKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSDKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVDAVEKEEVGTENE 817 >gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42] gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42] Length = 793 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 370/865 (42%), Positives = 532/865 (61%), Gaps = 86/865 (9%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI GEV+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+++ RMAQD++ R +L++G GNFGSVDGD AA RYTE R+ K A +L D+ KDT+D+ Sbjct: 61 YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDG+ +EPVV+ +R+PN+LVNG GIAVGMATNIP H LGEV++G +AV +NP+I Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LME I GPDFPT ILGR+GI+ AY +GRGSI IR + IE+TS +E+I+VTE+PY Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA ++EKIA+LVR+K+I I DLRDESDR G R+VIE++R A+A VILN LY+ T+L Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F +N++AL +P+ +L L+ ++ ++ V+ RRT Y L KA RAH+L GL IA Sbjct: 301 QTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 + +LD V+ +IR S E AR L+++ L+E Q Sbjct: 361 LDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQ 394 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 +AIL++RL RLTGL R+ I E SL I E DIL++ +R+L II++EL +K+ + Sbjct: 395 AQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFN 454 Query: 514 TPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 RRT IV +EDED I RE++V+T++H GYVKR+P S YR+Q+RGGKG G+ Sbjct: 455 DERRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTN 514 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 ++DFV L STH ++LFFS+ G VY+ K + +P A+G +IN+L + +GE I Sbjct: 515 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 574 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692 I+P + Y+ F TK G +R LS F I +G IA+ L DE+++V Sbjct: 575 IIPVSTFD---EEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDG 631 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 + I++ TK G +RFP +R GR + GV+GI+L D V+ M I+ Sbjct: 632 KKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGITLTDDDVVVGMEILEE--------- 681 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 + +L V+E G+GKRT Sbjct: 682 --------------------------------------------DSHVLIVTENGYGKRT 697 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 + ++R+ +R GKG++ ++ N G LV V + +++++ G LIR+ +N+I Sbjct: 698 PASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATKGEEDLMIITASGVLIRMDINDIST 755 Query: 873 ASRATKGVVIFSTAKDERVVSVERI 897 R T+GV + + E V +V + Sbjct: 756 TGRVTQGVRLIRMSDQEHVATVALV 780 >gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] Length = 869 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 365/904 (40%), Positives = 558/904 (61%), Gaps = 88/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y Sbjct: 3 DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 THNL EV+DGC+A ID ++++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++ Sbjct: 183 THNLSEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE G+ E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+ Sbjct: 243 RGKAEIET-EGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++KR A++ V+LN+LY+ T+LQS FSVN +AL +P + L ++KAFV R EVV+ Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRQLNLKDLIKAFVDHRHEVVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA +RAH+L GL IA N+DEV+ II+ S +P A LM+R Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q+RAI+E+RL +LTGL +D +R E + I +I Sbjct: 412 ----------------FSLSEIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + + +IK EL +KD+ R+T IV ++ ED ++M++T+SH+GY+KR Sbjct: 456 LENDDLCMKVIKDELKEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDFV ++ S H ++L F++ G Y KV+ +P G+ Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++G+A+ N+L++ +++ + + D N+ Y++F TK G +++ L + + Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ L D ++ V N++L+ + G+ +RF +A+RV GR + GVRG+ Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGM 694 Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +L D+V+ M + + Sbjct: 695 TLDDDPNDEVVGMVCIKDKEK--------------------------------------- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L VSE+G+GKR++ D+RI+NR GKG++ ++++ + G LVA+ Sbjct: 716 ------------ETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V + + I++++ G IR+ V+++ + RAT+GV + + K ++ + SV ++ + Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821 Query: 905 EAES 908 AE Sbjct: 822 IAEE 825 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 107/259 (41%), Gaps = 12/259 (4%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +K+ L Y R+ G + + +R++D + ++ + + + VL + G + Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + A G + L + + + ++ + V+ ++ G +R+ Sbjct: 677 HENAVRVMGRTASGVRGMT-LDDDPNDEVVGMVCIKD----KEKETVLVVSEQGYGKRSN 731 Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + D+ G + + + ++++++ T+ENDI++ K G +R +S + V G Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVI-G 790 Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVR I+L K D++ S+ VL + + TE Sbjct: 791 RATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEEKAQREALEDGANHEHPTENTDFEDV 850 Query: 778 DSSVEGNISEERCQELKLK 796 + +E N + + +E + Sbjct: 851 SNDIESNENADDTEETTEE 869 >gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159] gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159] Length = 825 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 369/893 (41%), Positives = 547/893 (61%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L IL ++ ++EV+VR Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK EL +K + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ D+ + Y+ F T+ G V+R +S F I + Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDDFH--DKYLFFTTRQGVVKRTSVSAFGNIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T LG VRF SA+R GR + GV+G++L Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI + + Sbjct: 698 KNDYVIGADHIADSRN-------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LT++EKG+GK+T + ++ R GKGI+ +++ N G L + VND+ Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++D G +IR V +I R+ GV + ++ ++V+ ++ I Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSEVIE 815 Score = 96.0 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 121/296 (40%), Gaps = 28/296 (9%) Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L++ +G +I ++ ++ +V TK + + + + + L Sbjct: 335 NMLAIEKGVPKILSLRQILDNYIDHQKEVIVRRTKFDKAKAESRAHIL-----EGLLIAL 389 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733 D DE++++ ++ + I + RF +S R S + + L + D Sbjct: 390 DHLDEVITIIRNSETDTI---AQAELMSRFDLSE------RQSQAILDMRLRRLTGLERD 440 Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ S ++ D + ++ + + + + + G + + Sbjct: 441 KIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDE 500 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E ++T+S KG+ KR +FR R G+G++ T V+ + + LV+ + +D Sbjct: 501 DLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGVQGTGVNDDDFVRELVST---STHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 ++ +++G + R+ EI R KG V + E + ++ ++ + D Sbjct: 558 AMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGETIQTIINVKSDDFHD 613 >gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672] gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672] Length = 805 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 371/875 (42%), Positives = 540/875 (61%), Gaps = 87/875 (9%) Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85 ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MG+ NK Y K AR+ G+V+GK+ Sbjct: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKF 77 Query: 86 HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145 HPHG++A+YD L R+AQD+S+R L++GQGNFGSVDGD AA RYTE R+ K LL D Sbjct: 78 HPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLD 137 Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205 + KDTVDF PNYDGS +EP+VL R PN+L+NG GIAVGMATNIP HNLGEVVD + Sbjct: 138 IDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHR 197 Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265 IDNP+ LD +++ I+GPDFPT +++G + +K AY TGRG+I IR + I++ +EQ Sbjct: 198 IDNPESTLDDILKFIKGPDFPTAGILMGVSDLKTAYLTGRGAIKIRARAEIQQLKSGKEQ 257 Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325 IV+TEIPYQVNK++++EKIAELVR+K IV I +LRDESDR G RVVIE+K+G DVILN Sbjct: 258 IVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGELPDVILN 317 Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385 QLY++T ++ F +N VAL +P+ L+ IL F+ R +V RRTK+LL KA +R H Sbjct: 318 QLYKFTQMEVTFGINTVALVNGRPQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEERLH 377 Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 +L GL AV N+DEV+ II+ S + + A+ +L+ R Sbjct: 378 ILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDR------------------------- 412 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 S++Q AIL+++L +LTGL + + E I+ IL++ L+GIIK EL Sbjct: 413 -FSFSDLQVSAILDMKLQKLTGLEIEKLVEEYKETLKNIEYYKSILNNHQILMGIIKDEL 471 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 L +KD+ RRT IV ++ ED I +MVVT+++ GY+KR PLS + +Q+RGGKG Sbjct: 472 LEIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKG 531 Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625 +S + + EDF+ L + S H+ +LFF++ G ++ KV+ LP +P RG+ + N+LS + Sbjct: 532 KSATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFS 591 Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685 QGE I +++ + + + Y+ TK+G V++ + +F SG +AMKL DE++ Sbjct: 592 QGEYIASVVTLSDLDH---DKYIFMCTKYGIVKKTAVEEFKSGR-SGIVAMKLRENDELV 647 Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 S T ++I + T+ G+ ++F +R GR + GVRGI+L + D V+SM ++ A Sbjct: 648 STVITTDNDNITIATRNGKTIQFESKEVRDM-GRTATGVRGITLEEDDYVVSMEVLTGA- 705 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 FILTV+ Sbjct: 706 ----------------------------------------------------PFILTVTS 713 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+GK + D+RI +R GKG++ + V+ + G +V V D ++L+S G +IR+ Sbjct: 714 NGYGKCSLVSDYRIQSRGGKGLKLSKVTP--KTGPIVGAKQVKLEDDVMLMSKTGKIIRI 771 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V++I + R T+GV + S A DE +VS ++E Sbjct: 772 AVSDIPVLGRDTQGVKLMSVADDE-IVSFAIVKEE 805 Score = 45.2 bits (105), Expect = 0.059, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 64/189 (33%), Gaps = 56/189 (29%) Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR----- 822 + ++ + K + + + +E ++L + ++T++ +G+ KRT F R Sbjct: 473 EIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGK 532 Query: 823 ---------------------------------------------SGKG---IRATDVSK 834 +G S+ Sbjct: 533 SATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFSQ 592 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I ++V + ++ + I + + G + + V E + + R+ G+V +++ +VS Sbjct: 593 GEYIASVVTLSDLDHDKYIFMCTKYGIVKKTAVEEFK-SGRS--GIVAMKLRENDELVST 649 Query: 895 ERIRESEIV 903 +++ + Sbjct: 650 VITTDNDNI 658 >gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] Length = 816 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 363/889 (40%), Positives = 546/889 (61%), Gaps = 85/889 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S +N Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLDEGETIQTIINVQQDSS--DNSYLFFTTRLGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ Sbjct: 693 DGDQVVGAGVI------------------------------------------------- 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 704 ----TEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + ++++++ G +IR V I R+T GV + ++ ++V+ + Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVAP 806 Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 97/238 (40%), Gaps = 22/238 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRNSETD---AEAQAELMAKFELSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + G + Sbjct: 433 ERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR + +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQGTGVKDDDFVKELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +D+++ ++KG + R+ EI R KG V + + E + ++ +++ Sbjct: 550 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGETIQTIINVQQDSSD 607 >gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG] Length = 870 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 368/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I+ Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++D+D + ++ + S Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703 V ++ G +R ++ I G +K + E + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I + GR ++GVR I + +V +MA V D D+ + Q Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ E E Sbjct: 830 PTDAHAQPADGQYAGNADEQVNKLLDRSETDKPAP 864 >gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143] gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143] Length = 827 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 556/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKR+ I +RDES+R+G R V Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 307 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 367 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 416 ---------------FRLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 R+ IIK+EL VK + RRT ++ G + EDED I D+++T+S+ GY+KR Sbjct: 461 VKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 521 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 581 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 639 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 698 EGDTVVGASVITD----------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 711 ------QDEVLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKN--GPLAGLLTVKGD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---EAE 907 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E E Sbjct: 763 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVRTEIE 822 Query: 908 ST 909 + Sbjct: 823 TE 824 >gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72] gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E] Length = 888 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 374/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+ Sbjct: 2 SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241 Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+E Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421 Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472 ++D S LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G V++ + + +PI S ++G+ L+N+++L E +T I+P + + N +V FAT Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF + Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IR + R + GVRG+ + E + Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATIDEEELL 747 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ S + +S + K+ IL E GFGKRT D+ R GKG+ A Sbjct: 748 DEDGDEISDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865 Query: 893 SVERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 866 GMACVEHDD--DEIEESE 881 >gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] Length = 823 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 379/905 (41%), Positives = 543/905 (60%), Gaps = 84/905 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ ++ LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S +R IIK+EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILASEARQRQIIKEELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E ++ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHEDVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV T DIL+ TKLG +RF S +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ + Sbjct: 691 RGIKLNTGDVVVGAGVLNADE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I +EI Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818 Query: 904 DEAES 908 DE Sbjct: 819 DEEAE 823 >gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] Length = 846 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 369/896 (41%), Positives = 549/896 (61%), Gaps = 90/896 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + K ARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+D V +IDN + ++ ++EII+GPDFPTG ILG GI+ AY T Sbjct: 182 NIPPHNLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+VIEL++ +A+V+LNQLY++T LQ F V M+AL G +P+ ++ +L ++ Sbjct: 302 SREGMRIVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVGKQPKVMNILELLGYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV+RIIR S + A+ ELM++ Sbjct: 362 HQEDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEK--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L +VQ +AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FELDDVQAQAIVDMRLRALTGLEREKLEKEYAELMAQ 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+ IL+ LLG+I++E+L +KD+ RRT I D+ ED I +E++V+T++ Sbjct: 456 IERLEAILADEKLLLGVIREEILVIKDKYGDDRRTSIGFDEYDISMEDLIPKENIVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ ++AQ RGGKG G+ DED+V +LF+ +TH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSDDTFKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG A+IN+L L GE+IT ++P + Y++ ATK G V++ L Sbjct: 576 YEIPEASRTSRGTAIINLLQLMPGEKITAVIPIDYYR---DQDYLIMATKKGLVKKTSLR 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +++ + ++G A+ L DE++ V+ +I+L TK GQC+RF + +R GRNS+G Sbjct: 633 EYMNVRKTGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRA-TGRNSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI+LA D+VI M +V Sbjct: 692 VRGINLADRDEVIGMQLVTQGHD------------------------------------- 714 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L VSEKG GKRT ++F NR GKG++ +++ + G ++ Sbjct: 715 ----------------LLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITE--KTGNVIG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + V+++D+I++++ G +IR+ + I + R T GV + + E V S+ ++R+ Sbjct: 757 IKAVDEDDEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVASIAKVRD 812 >gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1] gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7] gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1] Length = 888 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 373/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+ Sbjct: 2 SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241 Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+E Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421 Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472 ++D S LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G V++ + + +PI S ++G+ L+N+++L E +T I+P + + N +V FAT Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF + Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IR + R + GVRG+ + + E + Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ + +S + K+ IL E GFGKRT D+ R GKG+ A Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865 Query: 893 SVERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 866 GMACVEHDD--DEIEESE 881 >gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] Length = 859 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 374/912 (41%), Positives = 555/912 (60%), Gaps = 88/912 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E+ + +++ I ++I ++M+ +Y+ Y+++VI+GRA+PD+RDGLKPVHRR+LFGM Sbjct: 1 MSENT---ENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G NK Y K ARI GEVMGK+HPHG+A+IYD + RMAQ WSLR +L++GQGNFGSV Sbjct: 58 NELGNNSNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSV 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RLQ+ A +L+D+ K+TVDF N+D + +EP VL R PN+L+NG Sbjct: 118 DGDMPAAMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGAS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNI HNL EVVDG +A IDN DI ++ L++ ++ PDFPTG +I G G+K Sbjct: 178 GIAVGMATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIYGYEGVKQG 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG +V+RG ++E + RE++V+ E+PYQ+NKAA+ +KIA+L +K I I++ R Sbjct: 238 FETGRGRVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEAR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VI+LKR A A+V++NQLY+Y+ LQ+ + +N VAL +P L +L Sbjct: 298 DESDRDGMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKGRPRVLNLKDMLSE 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FR EVVVRRT++ L KA ++AH+L G IA+ +LDEV+ +IR S PE A+ LM R Sbjct: 358 FVDFRHEVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILELRL RLTG+ RD I+ E + + Sbjct: 418 --------------------------FELSEIQSKAILELRLQRLTGMERDKIKEEYDEV 451 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I +ILS IIK EL VK R+T I +M ED I ED+V+ Sbjct: 452 MKLIAYLKEILSDEGLRFKIIKDELEDVKKRFGDERKTEIQYLASEMRMEDIIAEEDVVI 511 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SHLGY+KR YR Q+RGG+G G R+ED++ LF+ STH ++LFF+ G Y Sbjct: 512 TISHLGYIKRTSAYDYRQQKRGGRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYW 571 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+ +P G +G+A+ N+++L ++I I+ + D+ ++ Y+V T +G ++ Sbjct: 572 LKVYEIPEGEKSGKGRAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIK 631 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L DF + ++G A+ ++ D++L + + I++ K G+ +RFP + +R G Sbjct: 632 KTLLEDFSRPRQNGVNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVRD-TG 690 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R ++GVRGI + D+V+ M V Sbjct: 691 RGAIGVRGIEVDNDKDEVVGMICVNK---------------------------------- 716 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + + + +L VSEKGFGKRT ++RI+NR GKG++ ++++ + Sbjct: 717 ----------------EDETRTVLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITE--K 758 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G+L+A+ V + D +++ G IR+ V +IR A RAT+GV + + + +V R+ Sbjct: 759 TGSLIAILDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARL 818 Query: 898 RESEI---VDEA 906 E E +EA Sbjct: 819 DEQEEQRLDEEA 830 >gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8] gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8] Length = 949 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 359/928 (38%), Positives = 549/928 (59%), Gaps = 80/928 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ Sbjct: 41 EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 100 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R L +GQGNFGSVDGD AA R Sbjct: 101 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 160 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG GIAVGMAT Sbjct: 161 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 220 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D VA ID+PDI++D LM+ + PDFPTG +I G G+ AY TGRG +V Sbjct: 221 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 280 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R H E+ R+ +VVTE+PYQVNK+ +E+IA+ VR++RI IADLRDESDR G R Sbjct: 281 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+GA+A+++ NQ+Y+++ LQ F VNMVAL G +P+ TL ++ +V R E+V Sbjct: 341 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+ TAR+ L + + D Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460 Query: 430 LIDLIDDSSYTIGS-----------------------DGTMYLSEVQTRAILELRLARLT 466 + I+ G D +L+E Q AIL LRL+RLT Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520 Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-L 525 GL R+ I E + +I+E IL+SR R + +IK+ELL+VK+ D RRT I Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 580 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D+ ED I R+ +VVT+++ G KR P+ YR Q RGG G G R++DF+ L++ + Sbjct: 581 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 640 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDES 641 H +L F+ G + + + +P G A+G+++ ++ ++ +R+ ++ EDE+ Sbjct: 641 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 700 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 N+ YV+ AT+ G V++ L + + +G I +K+D D+++ +N +++ + Sbjct: 701 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 760 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G+ V F R GRN+ GVRG+ L +++ M V A D Sbjct: 761 GGRAVHFDEGDARPM-GRNTRGVRGMELPGDQELVGMISVPPAMHD-------------- 805 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + +L ++E G+GKRT+ D+R+ Sbjct: 806 -----------------------------------DLDVLAIAEHGYGKRTALSDYRVQG 830 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R GKG+ + + GALV++ V ++ ++++++ G +IR V EI R T+GV Sbjct: 831 RGGKGLITLNRTDR--TGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQ 888 Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909 + + + V R+ +++ + + T Sbjct: 889 VIDLKDGDAIADVTRVADTDEPEADDGT 916 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 11/275 (4%) Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 R ++ + +++ + V+ + G VK+ L Y R G + Sbjct: 681 PDDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEG 740 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 D+ L + + + +S G + + P R + + L + + Sbjct: 741 DQLIEASL---TGGDNTVVVASSGG--RAVHFDEGDARPMGRNTRGVRGMELPGDQELVG 795 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVET 689 ++ P + ++L V+ +HG +R LSD+ R GK + L+ D +S++ Sbjct: 796 MISVP--PAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKG 853 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + D+++ T+ G +R + I GRN+ GV+ I L GD + + V D Sbjct: 854 VLGDEDLMVITEGGIMIRTRVGEISTM-GRNTQGVQVIDLKDGDAIADVTRVADTDEPEA 912 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + + E +D+ + + Sbjct: 913 DDGTADDEAPDADAAAAANGEMDDDAASDAVEDTS 947 >gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8] Length = 888 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 373/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+ Sbjct: 2 SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241 Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+E Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421 Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472 ++D S LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G V++ + + +PI S ++G+ L+N+++L E +T I+P + + N +V FAT Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLK--DENSFVFFAT 659 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF + Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IR + R + GVRG+ + + E + Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ + +S + K+ IL E GFGKRT D+ R GKG+ A Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865 Query: 893 SVERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 866 GMACVEHDD--DEIEESE 881 >gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] Length = 831 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 366/893 (40%), Positives = 549/893 (61%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +EKRI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 -----DNQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++ KG +IR V+ I R+T GV + D ++V+ ++ + Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810 Score = 94.5 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S G+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 +D ++ ++ G + R+ EI RA KG+ + + E + ++ ++ +I+D Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608 >gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum ATCC 824] gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018] Length = 830 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 358/899 (39%), Positives = 543/899 (60%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I+ EM+ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++Y AL R+AQD++LR +++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A ++ D+GK+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +IDNP+ + LM I+GPDFPT +I+G++GI+ AY TGRG I +R Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+K+ A++++ILNQLY++T LQ F +NM+AL +PE L IL+ ++ F+E+V+ R Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA RAH+L GL IA+ ++DEV+ +IR S + A+ LM + Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+L+L RLTGL R+ I +E N L I E IL Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +++L II+ EL +K + R+T I D++ ED I E++V+T++H GY+KR+ Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +Q+RGG+G + +++DFV ++FI STH ++LFF++ G +YK K +++P Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L L+ E+I ++ E + ++V TK G +++ + + I +S Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFD---EESFLVMCTKKGIIKKTVVGMYKNIRKS 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE++SV ++DI++ T G +RF +R GRN++GV+GI+L + Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M + Sbjct: 693 DDFVVGMEVPNQESDVLVVSENGFGKR--------------------------------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 T +++ +R GKG+ VS ++ G LV V V D D Sbjct: 720 --------------------THVGEYKCQHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++L+++ G IR+ V++I SR GV + DE+V+++ +I + + +S E Sbjct: 758 ELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEE 816 >gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] Length = 870 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 368/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I+ Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++D+D + ++ + S Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703 V ++ G +R ++ I G +K + E + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I + GR ++GVR I + +V +MA V D D+ + Q Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ E E Sbjct: 830 PNDSHEQPTDGQYAGNADEQVNKLLDRAETDKPAP 864 >gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1] gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4] Length = 874 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 371/906 (40%), Positives = 547/906 (60%), Gaps = 91/906 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+GKDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V +IDN D D++ L+ I++GPDFPTG +ILG GI AY T Sbjct: 182 NIPPHNLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGTAGINEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG + +R ++ IE + +IVVTE+PY VNKA ++EKIAELVR+K++ I DLRDES Sbjct: 242 GRGKVRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DRQG R+ IEL+R + +V+LN LY++T LQ F V M+AL +P+ L +LK ++ Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNEPKVLNLYDMLKYYLI 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N + A+ LM+R Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q++AI+++RL LTGL R+ + E L Sbjct: 419 -----------------------FSLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ + +LLG+I+ E+L + D+ RRT I D+ ED I + V+T++ Sbjct: 456 IAELRAILADKKKLLGVIRTEILLIADKYGDDRRTSIGFDEYDISMEDLIPVTNTVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ L +RAQ RGGKG G+ D+D++ +L + ++H ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A++N+L L GE+IT ++P E ++ ATK G V++ ++ Sbjct: 576 YEIPEASRTARGTAIVNLLQLQPGEKITAVIPIREYT---EGHFLFMATKKGIVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ D+ L TK GQC+RF + +R GR S+G Sbjct: 633 DYANVRKTGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVR-KTGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G++L GD+VI M + DA Sbjct: 692 VIGMNLTDGDEVIGMQMQSQGDA------------------------------------- 714 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ VSEKG GK T +F NR GKG++ +++ + G +V Sbjct: 715 ----------------LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITE--KTGNIVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EI 902 V VN +++++L++ +G +IR+ V++ + R T GV + + ++ V S+ ++RE + Sbjct: 757 VKAVNQDNELMLITTEGIIIRIKVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSL 816 Query: 903 VDEAES 908 +D A++ Sbjct: 817 IDNADT 822 >gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1] gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1] Length = 933 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 442/905 (48%), Positives = 598/905 (66%), Gaps = 24/905 (2%) Query: 1 MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + G + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL Sbjct: 1 MSDETDIIDPASPAPADGYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + + YVK A+I G+VMG +HPHG+ AIYDALAR+ Q WS+R+ L++GQGNF Sbjct: 61 YASKLGNFVAGRPYVKSAKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS D DPPA+ RYTE RL + + LLDDL KDTVDF NYDG QEP VL AR+PN+LVN Sbjct: 121 GSPDPDPPASMRYTEARLARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GGIAVGMATN+P HNLGEV+DGC+A ++NP I + L+E I GPDFPT +ILG +G Sbjct: 181 GAGGIAVGMATNVPPHNLGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLILGTSGA 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 K AY TGRGSI++R IE GDRE IV T IPYQV +A ++EKIAE ++KRI I+ Sbjct: 241 KAAYTTGRGSILMRCRHEIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D+RDES+R G R+VI+LKR A+A+V+LNQ++R+T QS F NM+A+ G +PE L Sbjct: 301 DIRDESNRDGTRIVIDLKRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLMLRDF 360 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 ++AF++FREEV+ RRTK+ LNKAR+RAH+L+GL +AV+NLDEVV IIR +PNP TAR L Sbjct: 361 IQAFISFREEVITRRTKFELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERL 420 Query: 418 MQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + + W DI I L++ GT LS Q +AIL+LRL RLT LGRD+I +E Sbjct: 421 LTKEWPIGDIAQYIRLVEAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDE 480 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L L +I+E L IL+ R +L ++++EL ++ TPR + I ++DED I R+ Sbjct: 481 LKELAEKIEEFLAILADRVKLYEVMREELEEIRATYATPRISEIAPAWDGLDDEDLIERD 540 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMVVTV+ GY+KR PLS +RAQ RGGKGR+G+ +DED + ++F+ STH VLFFS+ G Sbjct: 541 DMVVTVTLDGYIKRTPLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAG 600 Query: 597 FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 VY+ KVW+LP G P RG+ +IN+L L+ E I T++P PEDE W L VVFAT G Sbjct: 601 KVYRLKVWKLPEGGPTTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKG 660 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 NVRRN + F I +GK AMK D D ++ V +D++L +K G+ +RF + Sbjct: 661 NVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDV 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R F R S GVRG+ LA GD+V+S++ + +ER Y+K + Sbjct: 721 REFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPWKG----------- 769 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + +++ ER LK KEQFILTV G+GK +SSY++R + R G+G+ D Sbjct: 770 ----EKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNI 825 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 N G++VA F V +Q++LV+D+ LIR+ + +R+ R T GV +F+ K+E VVS Sbjct: 826 DRN--GSVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVMGRNTAGVRLFTVGKNEHVVS 883 Query: 894 VERIR 898 +I Sbjct: 884 AVKID 888 Score = 58.3 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 102/295 (34%), Gaps = 39/295 (13%) Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 ED + + G V+R + + GK ED + + +V+ Sbjct: 640 PLPEDEDEWGALSVVFATAKGNVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAP 699 Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLN------------- 625 V+ S G + + G + ++SL+ Sbjct: 700 SDDVMLASKSGKAIRFAAEDVREFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEERE 759 Query: 626 ----------QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + E + P D +++ +G + + ++ + R G+ Sbjct: 760 QYIKFAPWKGEKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGV 819 Query: 676 MKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 + +D+ D SV ++L T + +R + ++RV GRN+ GVR ++ K Sbjct: 820 VNIDNIDRNGSVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVM-GRNTAGVRLFTVGKN 878 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + V+S + + +E + +RR +T T++ +D ++ + E Sbjct: 879 EHVVSAVKIDETEEPENEAEEAIVEEMVERRGGGDETTPDTTVHSDDNLGEDPPE 933 >gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] Length = 841 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 363/891 (40%), Positives = 539/891 (60%), Gaps = 85/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA VILN LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV Sbjct: 303 IVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ NKA RAH+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+L II+ EL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV S +RAQRRGG+G G+ + DEDFV L STH ++LFF++ G VYK K + +P Sbjct: 517 KRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ ERI I+ Y+ F T+ G V+R ++ F I Sbjct: 577 YGRAAKGIPVINLLGIDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V E+ +++ T G V F + +R GR + GVRGI Sbjct: 635 RANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD V+ A++ Sbjct: 694 LRDGDYVVGAAVI----------------------------------------------- 706 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ +L ++E G+GKRT ++ I R GKGI+ +++ N G L + V+ Sbjct: 707 ------TEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + I+++++KG LIR V + RAT GV + + +VV++ + Sbjct: 759 GEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 809 >gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025] gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025] Length = 825 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 368/893 (41%), Positives = 546/893 (61%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L IL ++ ++EV+VR Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK EL +K + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ D+ + Y+ F T+ G V+R +S F I + Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDDFH--DKYLFFTTRQGVVKRTSVSAFGNIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T LG VRF SA+R GR + GV+G++L Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI Sbjct: 698 KNDYVIGA---------------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + +LT++EKG+GK+T + ++ R GKGI+ +++ N G L + VND+ Sbjct: 706 -DHIADNRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++D G +IR V +I R+ GV + ++ ++V+ ++ I Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSEVIE 815 Score = 96.0 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 121/296 (40%), Gaps = 28/296 (9%) Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L++ +G +I ++ ++ +V TK + + + + + L Sbjct: 335 NMLAIEKGVPKILSLRQILDNYIDHQKEVIVRRTKFDKAKAESRAHIL-----EGLLIAL 389 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733 D DE++++ ++ + I + RF +S R S + + L + D Sbjct: 390 DHLDEVITIIRNSETDTI---AQAELMSRFDLSE------RQSQAILDMRLRRLTGLERD 440 Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ S ++ D + ++ + + + + + G + + Sbjct: 441 KIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDE 500 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E ++T+S KG+ KR +FR R G+G++ T V+ + + LV+ + +D Sbjct: 501 DLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGVQGTGVNDDDFVRELVST---STHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 ++ +++G + R+ EI R KG V + E + ++ ++ + D Sbjct: 558 AMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGETIQTIINVKSDDFHD 613 >gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321] gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321] Length = 822 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 367/900 (40%), Positives = 557/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L +++KG+GKRT + ++ R GKG++ +++ N G+L + V + Sbjct: 706 ------QDEVLIITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAAEKEEVGTENE 817 >gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J] gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J] Length = 837 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 363/899 (40%), Positives = 543/899 (60%), Gaps = 85/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+ NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ TL I+ ++ + EV+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYIKHQIEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 ++ R+ II +E+ +K + RRT ++ G + +++ ++ E+ V +T S+ GY+KR Sbjct: 456 ANPERVKAIIIEEMDEIKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ Y F T+ G V+R S+F I + Sbjct: 576 RTAKGLPVVNLLKLDEEETIQTII--KAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+LG VRF S+IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ A + Sbjct: 693 DQDLVVGAARITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GK+T + ++ R GKGI+ +++ N G + + V+ Sbjct: 706 ------DQEVLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKN--GPIAGLVTVSGQ 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + I+++++KG +IR ++++ RAT GV + +D ++V+ + ++ E Sbjct: 758 EDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVTFALVEAEAETEDIEPE 816 >gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113] gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113] Length = 846 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 381/903 (42%), Positives = 537/903 (59%), Gaps = 71/903 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E + + V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R LI+GQGNFGS+DGD PAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYD S EP VL AR PN+L NG GIAVGMATN Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++ C+A+ID+P + + LM I GPDFPT ++ G GI+ AY TGRG IV Sbjct: 182 IPPHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIRGIQEAYLTGRGRIV 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H+E ++ I+VTE+PY VNKA +LEKI LV++K+IV I LRDESD+ G Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+EL+R +V+LNQLY +T LQS+F +NMVAL +P+ L L+ F+ R+EV Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEVFLRHRQEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+RAHVL GLAIA+ N+D ++ +I+ S +P AR L+ R W + Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 D++ +S LS Q +AILE+RL RLTGL + I +E + Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I I E L+IL++ RL+ +I++EL+ + ++ PRRT I + +D+ ED I E++VV Sbjct: 482 IIFISELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY Sbjct: 542 TLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KV+ LP GS ARGK +N+L L +GERI T++ E Sbjct: 602 KKVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIRE---------------------- 639 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719 ++ I + T LG + ++ R Sbjct: 640 -----------------------------FEKDKYIFMVTALGVVKKTSLADFSRPR--- 667 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S G+ + L +GDQ++ + E + + R + + Sbjct: 668 -SSGIIALDLREGDQLVGADLTD----GEQEIMLFSSGGKVIRFSERDVRPLGRTARGVK 722 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +E + ILT +E G+GKRT+ ++R+ R GKGI + + N G Sbjct: 723 GMELPSKHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGKGIISIRTTPRN--G 780 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 A+V V D+++L+S+ GTLIR PV+ I + R T+GV + + + ER+V +ERI E Sbjct: 781 AVVGAVQVEKEDEVVLISNGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840 Query: 900 SEI 902 Sbjct: 841 DGE 843 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 ++ E + + + A R + E S + ++ N + R ++L +E ++T+S Sbjct: 486 SELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVVTLSH 545 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+ K + +R R GKG AT + + + I L F N +D ++ S +G + Sbjct: 546 SGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKL---FIANTHDTLLCFSSRGKVYWK 602 Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 V E+ SR +G V + + ER+ +V IRE E Sbjct: 603 KVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIREFEKD 643 >gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] Length = 831 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 366/893 (40%), Positives = 550/893 (61%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +EKRI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 705 -----DKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++ KG +IR V+ I R+T GV + D ++V+ ++ + Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810 Score = 94.5 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S G+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 +D ++ ++ G + R+ EI RA KG+ + + E + ++ ++ +I+D Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608 >gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169] gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1] Length = 888 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 373/918 (40%), Positives = 550/918 (59%), Gaps = 58/918 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+ Sbjct: 2 SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241 Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+E Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421 Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472 ++D S LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G V++ + + +PI S ++G+ L+N+++L E +T I+P + + N +V FAT Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF + Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IR + R + GVRG+ + E + Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLTTIDEEELL 747 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ + +S + K+ IL E GFGKRT D+ R GKG+ A Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865 Query: 893 SVERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 866 GMACVEHDD--DEIEESE 881 >gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707] gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707] gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] Length = 846 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 379/903 (41%), Positives = 533/903 (59%), Gaps = 71/903 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E + + V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R LI+GQGNFGS+DGD PAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYD S EP VL R PN+L NG GIAVGMATN Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ C+A+ID+P + + LM I GPDFPT ++ G GI+ AY TGRG I Sbjct: 182 IPPHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGARGIQEAYLTGRGRIF 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H+E ++ I+VTE+PY VNKA +LEKI LV+EK+IV I LRDESD+ G Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+EL+R +V+LNQLY +T LQS+F +NMVAL +P+ L L+AF+ R+EV Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEAFLRHRQEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+RAHVL GLAIA+AN+D ++ +I+ S +P AR L+ R W + Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421 Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 D++ S LS Q +AILE+RL RLTGL + I +E + Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I I L+IL++ RL+ +I++E + ++++ TPRRT I + +D+ ED I E++VV Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTPRRTEIQDNHVDLRLEDLIQEENVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY Sbjct: 542 TLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KV+ LP GS ARGK +N+L L +GERI T++ E Sbjct: 602 KKVYELPQGSRVARGKPFVNLLPLEEGERINTVLSIRE---------------------- 639 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719 ++ I + T G + ++ R Sbjct: 640 -----------------------------FEKDKYIFMVTASGVVKKTSLADFSRPR--- 667 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S G+ + L +GDQ++ + E + + R + + Sbjct: 668 -SSGIIALDLREGDQLVGADLTD----GVQEIMLFSSGGKVIRFSERDVRPVGRTARGVK 722 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +E + ILT +E G+GKRT+ ++R+ R G+GI + + N G Sbjct: 723 GMELPSEHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGRGIISIRTTPRN--G 780 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +V V D+++L+SD GTLIR PV+ I + R T+GV + + + ER+V +ERI E Sbjct: 781 EVVGAVQVEKEDEVVLISDGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840 Query: 900 SEI 902 Sbjct: 841 DGE 843 >gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] Length = 856 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 356/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +KRI I++ DESDR+G R+V Sbjct: 243 AKAEIEIGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KAR+RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D NN YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni] gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] Length = 866 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 356/905 (39%), Positives = 537/905 (59%), Gaps = 85/905 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + +++ + I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM Sbjct: 1 MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSV Sbjct: 60 NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNL EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ A Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+ +R IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +R Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R I E L Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIEAEYTDL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I++ DIL+ R+ II QELL + ++ RRT + G + +++ ++ E+ V+ Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513 Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 ++H GY+KR+ S + Q RGG+G G+ D+DFV L STH ++LFFS G VY Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K K + +P QA+G +IN+L L+ GER+ ++ D ++ + ++ F TK G V+R Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +S+F I +SG A+ L D ++SV + +I++ + G V F S +R GR Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++L D V+ Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L + +L ++EKG+GK+T+ ++ I R GKG + +++S N G Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + V+ ++ I++ +D G +IR ++ I RAT GV + + +V ++ ++ + Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816 Query: 900 SEIVD 904 E + Sbjct: 817 EEDEE 821 >gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 829 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 358/900 (39%), Positives = 538/900 (59%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 2 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 409 -------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNIRT 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + + Sbjct: 692 EGDFVVGTSRID------------------------------------------------ 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 704 -----DNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I RA +GV + + ++V+ + +E +S E Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 816 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 614 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 671 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + +N V+ +++G +R + Sbjct: 672 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDNQEVLVISENGLGKRTQA 722 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 723 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 781 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V + + + + Sbjct: 782 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 821 >gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 848 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 552/900 (61%), Gaps = 85/900 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ + + K Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +LI+GQGNFGSVDGD PAA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK + +L D+ KDTVD + N+D + +EP VL R P +L+NG GIAVGMATN+P H Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDG A IDN D+ +D LME ++ PDFPTG I G G++ A+ TGRG +V+R Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRAK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + E+ RE I+VTEIPYQVNKA M++K A+++ +K+I I+ +RDESDR G R+V Sbjct: 245 ATFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVYV 303 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +++LN+LY+YT+LQS FSVN +AL +PE L ++ FV R VVVRRT Sbjct: 304 IKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHVVVVRRT 363 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA RAH+L GL IA N+DEV+ IIR S N + AR+ L++R Sbjct: 364 EYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIER------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE+Q +AI+E+RL +LTGL +D +R+E + I++ DIL+ Sbjct: 411 -------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAK 457 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + R + II++EL +KD+ RR+ I D+ D I + +V+T+S+ GY+KR L Sbjct: 458 KERRMSIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSL 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y+ Q RGG G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS + Sbjct: 518 TEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS 577 Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G+A+ N++++ Q + + + + DE NN +++ ATK G V++ L + + + Sbjct: 578 KGRAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTN 637 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ + DE+LSV+ T E+ ++L K G+ +RF S R GRN+ GVRGI+LA Sbjct: 638 GINAITIKDDDELLSVKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITLAN 696 Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M V +++ Sbjct: 697 DQDEVIGMVSVNDVESN------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL VSEKG+GKR+S D+RI+NR GKG++ V++ + G LVA+ V D Sbjct: 714 ---------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVAIKNVTDA 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D +++++ G IR+ V +R+ RAT+GV + + ++ + +V +++ + + E E Sbjct: 763 DDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLE 822 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 57/419 (13%), Positives = 139/419 (33%), Gaps = 48/419 (11%) Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD--GTMYLSEVQTR 455 +E+++ I + + M S +++++ D D ++ G + ++++ Sbjct: 442 EEIMKTIEDLKDILAKKERRM--SIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPD 499 Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515 + + ++ + R + + + L + Sbjct: 500 KKVVITISNAGYIKRTSLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQK 559 Query: 516 RRTRIVEGLLDM---------------EDEDCIVREDMVVT----------------VSH 544 + + E + V T + Sbjct: 560 GKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATK 619 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G VK+ L Y R G + + ++D+D + + + + + V+ G + + Sbjct: 620 KGQVKKTALEQYSRPRTNG--INAITIKDDDELLSVKLTTGESQVMLALKSGKAIR---F 674 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 P R + + ++L + M D S ++ ++ G +R+ L D Sbjct: 675 EESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESN----ILVVSEKGYGKRSSLED 730 Query: 665 F--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + G + + + E+++++ T +D+++ K G +R ++++RV GR + Sbjct: 731 YRITNRGGKGVKTISVTEKTGELVAIKNVTDADDLMIINKSGIAIRMEVASLRVM-GRAT 789 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 GVR I+L D + ++A V D DE T + + N+ Sbjct: 790 QGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLEGVVGETTENPAGESTTQEQNTSNEEE 848 >gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 823 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D ++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDALLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A [imported] - Buchnera sp. (strain APS) gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 830 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241 Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+ Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L Y SE Q +AIL+LRL ++T L ++ I E N L + KE Sbjct: 422 YLAKK-----------HEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYV Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PLS Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG+ ++N+L L+ ERIT I+P + +NL + T HG V+++ LS F + Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + K D+V+S+ + + + Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + DQI++++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I + I Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826 >gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] Length = 853 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 372/902 (41%), Positives = 539/902 (59%), Gaps = 87/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E SV I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRRILF M +G ++K Sbjct: 2 DETLNSSVSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ G+V+GKYHPHG++A+YDAL RMAQ WS+R +L++GQGNFGSVDGD PAA R Sbjct: 62 PFKKSARVVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A LL D+ KDTVDF PNYD S +EP VL ARYPN+L+NG GIAVGMATN Sbjct: 122 YTEARMSRLAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E ++ +A+++NP+ID D LM+I+ GPDFPTG I GR+GI++A+ TGRGS+ Sbjct: 182 IPPHNLAETINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSAFMTGRGSVT 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + +E R+ +++TE+PYQVNKA ++E IA VR+K++ I DLRDESDR G Sbjct: 242 MRARAIVEVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ IELK+ +V+LN LY++T LQ F N++AL +P+ + +L F+ R +V Sbjct: 302 RIAIELKKNEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLLHFLDHRRQV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR + L KA RAH+L GL IA+ +DEV+++IR S A+ LM+ Sbjct: 362 VTRRCLFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLME--------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q +AIL++RL RLTGL RD I+ E + I Sbjct: 413 -----------------HFGLSDLQAQAILDMRLQRLTGLERDKIKAEYEEIQRLITHLK 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ L+ +I +E+ +V+D PRR+ I++ ++ ED I EDMVVT+S+ GY+ Sbjct: 456 AILADEKLLMNVIVEEMEAVRDRYADPRRSEIMDETAELSVEDLITEEDMVVTISNEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR S+YRAQRRGG+G++ + +DEDFV L + STH +LFFS G V+++KV+ +P Sbjct: 516 KRNATSLYRAQRRGGQGKTAMTTKDEDFVAQLMVASTHDYLLFFSDQGRVFRKKVYEVPQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARGKAL+N+L + + ERI+ + E + N +++ ATK+G V++ +LS++ I Sbjct: 576 AGSTARGKALVNLLPVEKDERISATLAIREFD---ENRFIIMATKNGVVKKTRLSEYQNI 632 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+KLD D ++SV + D++L T G+ +RF S +R GR++ GV G+ Sbjct: 633 RANGIIAIKLDDDDGLISVLVSNGDEDVMLATSGGKAIRFAESDVRPM-GRSTRGVTGMR 691 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L VISM +V + Sbjct: 692 LPGDCNVISMTLVSDEATLLAVSENGFGKRT----------------------------- 722 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +VSE + + R G+G+ N G +VA V+ Sbjct: 723 -------------SVSE-----------YNVQKRGGQGVFTLKTGGRN--GDMVAALLVH 756 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+DQ+++++D G L+R+ +N + + R T+GV + + + ERV+ R+ E DE + Sbjct: 757 DDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAEQ-ADDELAT 815 Query: 909 TE 910 E Sbjct: 816 DE 817 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 98/258 (37%), Gaps = 16/258 (6%) Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E+ + + + G VK+ LS Y+ R G + + D+D + + + + V+ + Sbjct: 607 DENRFIIMATKNGVVKKTRLSEYQNIRANG--IIAIKLDDDDGLISVLVSNGDEDVMLAT 664 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G + + RG + R+ + ++ ++ Sbjct: 665 SGGKAIRFAESDVRPMGRSTRGVTGM---------RLPGDCNVISMTLVSDEATLLAVSE 715 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +S++ R G+ L + +++ ++ +++ T G+ VR + Sbjct: 716 NGFGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAALLVHDDDQVMMMTDSGRLVRIRL 775 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + + GRN+ GV+ I+ +G++VI V D ++ + + Sbjct: 776 NGV-SVIGRNTQGVKLIACKEGERVIGAVRVAEQADDELATDELIEGTADEATANDAAAG 834 Query: 771 EITSLKNDSSVEGNISEE 788 E +S V + ++ Sbjct: 835 EQQEAAGESDVSNDEGDD 852 >gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] Length = 836 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 358/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 7 NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA R Sbjct: 67 PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G R Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL RLTGL RD I E L I + D Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548 IL+ R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+ Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++ Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVN 696 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ + + Sbjct: 697 LREGDFVVGTSRID---------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN Sbjct: 711 -------DNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +++++D G +IR V I RA +GV + + ++V+ + +E +S Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDS 821 Query: 909 TE 910 E Sbjct: 822 PE 823 Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + +N V+ +++G +R + Sbjct: 679 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDNQEVLVISENGLGKRTQA 729 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V + + + + Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 828 >gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 556/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817 >gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] Length = 870 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 368/890 (41%), Positives = 541/890 (60%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I+ Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + + + V+ G VKR P+ + R G + ++D+D + ++ + S Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++L + LG+ K + A G I R+ + + Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703 V ++ G +R ++ I G +K + E + V T DIL+ T G Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF I + GR ++GVR I + +V +MA V D D+ + Q Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ E E Sbjct: 830 PTDEHAQPADGQYAGNADEQVNKLLDRAETDKPAP 864 >gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] Length = 829 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 357/900 (39%), Positives = 538/900 (59%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 2 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 409 -------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNIRT 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + + Sbjct: 692 EGDYVVGTSRID------------------------------------------------ 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 704 -----DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I RA +GV + + ++V+ + +E ++ E Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 816 Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 614 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 671 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + ++ V+ +++G +R + Sbjct: 672 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 722 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 723 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 781 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V D + + + Sbjct: 782 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 821 >gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] Length = 858 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] Length = 858 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821 Query: 907 ESTE 910 + E Sbjct: 822 PTEE 825 >gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 839 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 351/895 (39%), Positives = 539/895 (60%), Gaps = 84/895 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ ++ IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MAENDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGS+DGD P Sbjct: 61 TPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K A +L D+ K+TVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIPTHNLGEV+ ++DNPD + LM+++ GPDFPTG V++G++GI+ AY TGR Sbjct: 181 MATNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVMGKSGIRKAYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R IE+ R+QIVV EIPY VNKA ++E+IA+L R K I I D+ DE+DR Sbjct: 241 GTIVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ + Sbjct: 301 EGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKEILQYYLEHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E VV RRT++ L KA +RAH++ GL IA+ ++DE++ IIR S E A+ +LM+ Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLME------ 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+ Q +AIL++RL RLTGL R+ I E L I Sbjct: 415 --------------------NYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544 + DIL+ + R+ II ELL ++ + RRT + + ++EDED I E ++VT++H Sbjct: 455 DYKDILAHQERINQIIYDELLEIQKKFGDKRRTELQVGDITNIEDEDLIEEESIIVTLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ +++Q RGG+G G+ + +DF+ L TH +LFF++ G VY K + Sbjct: 515 NGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G +IN+L ++ E+I+ ++ + + ++ ++ F TK G V+R +++ Sbjct: 575 EIPEYGRSAQGIPIINLLGIDNKEKISAVINVSHET-NDDDKFLFFTTKQGTVKRTPVTE 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +G A+ L DE++ V+ + ++++ T G + F S +R GR++ GV Sbjct: 634 FKNIRSNGLKAINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSM-GRSAAGV 692 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L D VI A + Sbjct: 693 RGIRLRDDDYVIGTAPLDD----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SE G+GK+T + ++ I R G G++ +V+K N G LV + Sbjct: 712 ------------DSNVLVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKN--GPLVGL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V ++ I+LV+D G +IR V + R+ GV + V ++ ++ + Sbjct: 758 TTVKGDEDIMLVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIAKVEK 812 >gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806] Length = 850 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 360/903 (39%), Positives = 536/903 (59%), Gaps = 64/903 (7%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 5 QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124 Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL A + LL D+ +TVDF N+DGS QEPVVL +R P +L+NG GIAVGMATNIP Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++DG VA+I NPD+ L I GPDFPTG ILGR GI+ AY TGRGSI +R Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244 Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE DR+ I++TE+PYQ NKAA++EKIA+LV +++I I+D+RDESDR G Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKR A V+LN LY+ T LQS F NM+AL +P TL L+ F+ FR E Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + + +A+ L+Q Sbjct: 365 VITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQ-------- 416 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSEVQ AIL+++L RLT L + I+ E L +I + Sbjct: 417 ------------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ + R+ II++EL +K TPRR+ I + ++ + D I E ++ V+ GY Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + +Q R +G++G M+++D + H SVLFF+ G VY + +P Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 GS ARG ++ +L + +GE+IT+++ E + Y++ T+ G +++ L+ F Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSEFS---EDNYLIMLTQKGFIKKTALAAFSN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725 I +G IA+ L+ D++ V +E+ +++ ++ G + F +R GR + GV+ Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSL-GRATKGVK 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L GD++ISM I+ +++ + Sbjct: 695 SMKLRSGDELISMDILPSQIV-------------------------AQIAESNQEETEDE 729 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 SEE E+ ++L ++ G GKR R+ NR+G G+R K N L A+ Sbjct: 730 SEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKN--DKLAALH 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN N++ ++++++G +IR V+ I SR+ G+ + +D+ + +V + S+ + Sbjct: 788 VVNPNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEES 847 Query: 906 AES 908 +S Sbjct: 848 EDS 850 >gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01] gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01] Length = 879 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARGK ++NIL L +GERIT I+P Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 DE + E I + T G + P++ FA S G+ Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ + Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 68/429 (15%), Positives = 154/429 (35%), Gaps = 29/429 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ + H+L + + E + +R A Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 524 THDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + A + + Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEANAEGQAPEAPAAD 870 Query: 774 SLKNDSSVE 782 S E Sbjct: 871 DAAEGSEEE 879 >gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 836 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 358/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 7 NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA R Sbjct: 67 PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G R Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL RLTGL RD I E L I + D Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548 IL+ R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+ Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++ Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVN 696 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ + + Sbjct: 697 LREGDFVVGTSRID---------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +++++D G +IR V I RA +GV + + ++V+ + +E +S Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDS 821 Query: 909 TE 910 E Sbjct: 822 PE 823 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + ++ V+ +++G +R + Sbjct: 679 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDSQEVLVISENGLGKRTQA 729 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V + + + + Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 828 >gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] Length = 845 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 363/905 (40%), Positives = 550/905 (60%), Gaps = 86/905 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN DID+D LM I+ PDFPTG I G +G+++AY TGRG +V+ Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+ Sbjct: 242 RAKTEIESHPT-HDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R EVV+ Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIRLFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ+RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FQLTEVQSRAIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +IK EL+ VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LTNEELCKKVIKDELIEVKEKYGDQRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQHRGGVGSKGSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M + + Sbjct: 694 LDEDGTDEVIGMICIKNP------------------------------------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +E+ I+ +SE G+GKR+ D+R +NR GKG++ +++ + G LVA+ Sbjct: 712 ---------QEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITE--KTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905 V D + +++++ G IR+ V +RI RAT+GV + K ++++ SV ++ + Sbjct: 761 VTDENDLMIINKSGITIRLHVASVRIMGRATQGVRLIDLEKRNDQIGSVCKVTSESEEEN 820 Query: 906 AESTE 910 ++ + Sbjct: 821 VDNED 825 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 103/241 (42%), Gaps = 12/241 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A G I L + + + ++ ++ +++G Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGTDEVIGMICIKN----PQEETIMVISENGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L +++++++ T END+++ K G +R ++++R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLSITEKTGKLVAIKSVTDENDLMIINKSGITIRLHVASVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I L K DQ+ S+ V + + + G +E Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVTSESEEENVDNEDSVSVDGIPFNEEGSADEKQ 844 Query: 774 S 774 Sbjct: 845 E 845 >gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801] gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802] gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801] gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802] Length = 857 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 370/887 (41%), Positives = 534/887 (60%), Gaps = 60/887 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +++EM +SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 PQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + + LL D+ +TVDF N+DGS QEPVVL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG +A+I NP++ L ++I GPDFPTG ILGR+GI++AY +GRGSI + Sbjct: 184 PPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITM 243 Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DR+ I+VTE+PYQ NKAA++E+IA+LV EKRI I+D+RDESDR Sbjct: 244 RGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T +QS F NM+AL +P+ TL L F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA++R H+L GL IA+ NLD V+++IR + + TAR L+++ Sbjct: 364 ETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQ------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS VQ AIL+++L RLT L + I E L +I + Sbjct: 418 --------------------FGLSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II++EL +K TPRRT I+ ++ D D I E ++ ++ G Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIIHDEGEIVDTDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ R +G++ ++++D V H VLFFS G VY +++ Sbjct: 518 YIKRMPVSTFGAQSRATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG ++ +L + + E+IT+I+ E ++Y + T+ G +++ LS F Sbjct: 578 PAASRTARGVPIVQMLPIPKDEKITSIVAVSEFR---EDVYFIMLTRKGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V+ +E+ I++ T+LG + F IR GR++ GV Sbjct: 635 NIRTNGLIAIVLGEGDQLRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPL-GRSTRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM I+ + + T E TS Sbjct: 694 KAMKLKKGDELISMDILSSQVIAGISTVHEGEEEEDLLENEEELTVEETSG--------- 744 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +ILT++ G+GKR FR+ NR+G G+R + L ++ Sbjct: 745 ------------GPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKF--KSPSDRLASL 790 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 VN+ D++++VS++G +IR V+ I SR GV + +D+ + Sbjct: 791 LVVNEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDDAI 837 >gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 823 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 355/905 (39%), Positives = 536/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147] gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 836 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 357/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 7 NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA R Sbjct: 67 PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G R Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL RLTGL RD I E L I + D Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLAD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548 IL+ R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+ Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++ Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVN 696 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ + + Sbjct: 697 LREGDYVVGTSRID---------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +++++D G +IR V I RA +GV + + ++V+ + +E ++ Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDA 821 Query: 909 TE 910 E Sbjct: 822 PE 823 Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + ++ V+ +++G +R + Sbjct: 679 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 729 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V D + + + Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 828 >gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008] gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008] Length = 822 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 380/904 (42%), Positives = 541/904 (59%), Gaps = 84/904 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ S + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILGSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E ++ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV T DIL+ TKLG +RF +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ + Sbjct: 691 RGIKLNAGDVVVGAGVLNTDE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I +EI Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818 Query: 904 DEAE 907 +E E Sbjct: 819 EEVE 822 >gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116] gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116] Length = 878 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARGK ++NIL L +GERIT I+P Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 DE + E I + T G + P++ FA S G+ Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ + Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 66/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ + H+L + + E + +R A Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 524 THDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + A + + Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEANAEGQAPEAPADD 870 Query: 774 SLKNDSSV 781 + + Sbjct: 871 AAEGSEEE 878 >gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] Length = 840 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 372/909 (40%), Positives = 549/909 (60%), Gaps = 92/909 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 EPNIFDKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+GK+TVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN + +++ ++EII+GPDFPTGA ILG+ GI+ AY T Sbjct: 182 NIPPHNLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +I+VTE+PY VNKA ++EK+AEL +EK+I I DLRDES Sbjct: 242 GRGKIRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G R+VIEL+R +A+VILNQL ++T LQ F V M+AL +P L+ +LK ++ Sbjct: 302 DRSGMRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLYLE 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 ++EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ ELM+R Sbjct: 362 HQKEVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FGLSDAQAQAIVDMRLRALTGLEREKLENEFKELEAK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ +LLG+I++E++ + D+ RRT I DM ED I E+ +V ++ Sbjct: 456 IEELRAILADEKKLLGVIREEIMLISDKYGDDRRTSIGFDEFDMSMEDLIPDENTIVAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ D+D++ DL + + H ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSVDNFKSQNRGGKGIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKT 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P GS ARG A+IN+L L GE IT I+P E + ++ ++ ATK+G V++ + Sbjct: 576 YAIPEGSRTARGTAIINLLQLLPGESITAIIPMKEYD---DDKFLFMATKNGMVKKTPMM 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L TK+GQC+RF + +RV GR S+G Sbjct: 633 EYANVRKNGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRV-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ L D+V+ M Sbjct: 692 VIGMKLNDDDEVVGM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ + + +L VSE G GKRT +F R GKG+ +++ + G +V Sbjct: 707 --------QMDTQGEKLLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITE--KTGKIVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESE 901 V+D+ I++++++G +IR+ V +I + R T GV + + D RV S+ ++R+ Sbjct: 757 AKLVHDDHDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDDG 816 Query: 902 IVDEAESTE 910 E E E Sbjct: 817 SKSEGEGLE 825 >gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] Length = 879 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARGK ++NIL L +GERIT I+P Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 DE + E I + T G + P++ FA S G+ Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ + Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 99/255 (38%), Gaps = 15/255 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D E + + G VK+ PL+ + R G V +RD+D + + I + + ++ Sbjct: 637 DEFSPEKFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIM 694 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + ++ A A + + L +++ +++ N ++ Sbjct: 695 LFSKAGKVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILT 745 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 T++G +R +L+++ R+ + + + + + + +++++ T G VR Sbjct: 746 VTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVR 805 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GRN+ GV I A+ + V+ + + + + + Sbjct: 806 TRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEENAEGQAP 864 Query: 768 DTEEITSLKNDSSVE 782 + S E Sbjct: 865 EAPAADDAAEGSEEE 879 >gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] Length = 871 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 371/897 (41%), Positives = 540/897 (60%), Gaps = 90/897 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN ++ ++ L+ I++GPDFPTGA+ILG TGI AY T Sbjct: 182 NIPPHNLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R +++IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DLRDES Sbjct: 242 GRGKIRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DRQG R+ IEL+R + +V+LN LY++T +Q F V M+AL +P+ L +L ++ Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLD 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N A+ L++R Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L++VQ +AI+++RL LTGL R+ I E L Sbjct: 419 -----------------------FSLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ +LLG+I++E+L + ++ RRT I D+ ED I + V+ ++ Sbjct: 456 IAELKAILADEKKLLGVIREEILLIAEKYGDERRTSIGFDEYDISMEDLIPVTNTVIAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ L +RAQ RGGKG G+ DED++ +L + ++H ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L GE+IT ++P E Y+ ATK+G V++ ++ Sbjct: 576 YEIPEAGRTARGTAIINLLQLQPGEKITAVIPIKEYT---EGHYLFMATKNGIVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ E DI L TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRS-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G++L GD+V+ M + DA Sbjct: 692 VIGMNLTDGDKVVGMQMESQGDA------------------------------------- 714 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ VSEKG GK T + +F NR GKG++ +++ + G +V Sbjct: 715 ----------------LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITE--KTGNIVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V VN +D+++L++ +G +IR+ V++ + R T GV + + A D V S+ ++RE Sbjct: 757 VKAVNQDDEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIAKVRED 813 >gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum MolK2] gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum MolK2] Length = 842 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 361/873 (41%), Positives = 531/873 (60%), Gaps = 65/873 (7%) Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++ Sbjct: 2 HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGSVDGD AA RYTE RL K AH LL D+ K+TVDF PNYDGS EP +L AR P Sbjct: 62 GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIP 121 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+L+NG GIAVGMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREK 291 G +G++ Y TGRG +V+R +H E + + I+V E+PYQVNK +LE+IAELV EK Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEK 241 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 R+ I+D+RDESD+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L +L+ F+ R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456 A++ELM RSW++ ++D++ + + + + DG LS+ Q + Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421 Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516 IL++RL RLTGL +D I E + +I + LDIL+ R+ II +EL ++ E R Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481 Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576 R++I +++ ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D+ Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 + LF+ +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696 + + +V AT G V++ L++F ++G IA+ LD D ++ + ++D+ Sbjct: 602 KQFD---EQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L + G+ VRF + +R GR + GVRG++L +G QVI+M + A E+ Sbjct: 659 MLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LT +E G+GKRT + Sbjct: 718 -------------------------------------------VLTATENGYGKRTPISE 734 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R KG+ A S+ N G +VA V D+I+L++ G LIR V+EIR RA Sbjct: 735 YTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRA 792 Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 T+GV + + + ++ ++R+ ES+ E + Sbjct: 793 TQGVTLIAVGEGNKLSGLQRVVESDAEGEDAAD 825 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 604 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 661 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 662 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 718 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 719 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 778 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + Sbjct: 779 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGATESDGEAPSA 837 Query: 766 SGDT 769 Sbjct: 838 DTTE 841 >gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] Length = 866 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 355/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + +++ + I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM Sbjct: 1 MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSV Sbjct: 60 NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNL EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ A Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+ +R IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +R Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R I E L Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I++ DIL+ R+ II QELL + ++ RRT + G + +++ ++ E+ V+ Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513 Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 ++H GY+KR+ S + Q RGG+G G+ D+DFV L STH ++LFFS G VY Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K K + +P QA+G +IN+L L+ GER+ ++ D ++ + ++ F TK G V+R Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +S+F I + G A+ L D ++SV + +I++ + G V F S +R GR Sbjct: 633 TAVSEFTNIRQLGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++L D V+ Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L + +L ++EKG+GK+T+ ++ I R GKG + +++S N G Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + V+ ++ I++ +D G +IR ++ I RAT GV + + +V ++ ++ + Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816 Query: 900 SEIVD 904 E + Sbjct: 817 EEDEE 821 >gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002] gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002] Length = 841 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 367/893 (41%), Positives = 531/893 (59%), Gaps = 65/893 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA-HFLL 143 YHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DP AA RYTECRLQ A + LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ +TVDF N+DGS QEPVVL +R P +LVNG GIAVGMATNIP HNLGE++DG Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD- 262 A+I NP+I + LM+ I PDFPTGA ILGR+GIK+AY TGRGSI +RGV+ IE + Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240 Query: 263 --REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 +E I+VT++PYQ NKAA++E+IA++V +K+I I+D+RDESDRQG R+VIELKR A Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN LY++T LQ+ F NM+AL +P+ L L+ F+ FR EV+ RRT+Y L KA Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++R H+L GL IA+ NLD V+ +IR + + AR+ LM Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLM---------------------- 398 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LS+ Q AIL+++L RLT L D I E L ++I + DIL+ R R+ I Sbjct: 399 ----DGYNLSQAQADAILQMQLRRLTALEADKIEAEHQDLLLKITDLEDILARRERVYAI 454 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I+ EL +K + RRT +V D++D D I E + ++ GY+KR+P++ + AQ Sbjct: 455 IEAELTEIKTIHQSDRRTELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQN 514 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 R +G++ M+++D V H VLFF+ G VY +++P S ARG I Sbjct: 515 RATRGKAATKMKEDDGVDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQ 574 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L + + E+IT ++ E + Y+V T++G +++ LS F +I +G IA+ L+ Sbjct: 575 LLPIPKDEKITAMLAVSEFT---EDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLED 631 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLA-KGDQVIS 737 DE+ V QE+ I++ + G + F + +R GR++ GVR + L D+++S Sbjct: 632 GDELRWVRLARQEDSIIVASSEGMAIHFQADHNQLRPL-GRSTRGVRAMKLKSDDDKLVS 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M IV + ++ + E E E + Sbjct: 691 MDIVSS--------------------------QITAAIAAADTAEDEDDNEEVTENVDQG 724 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +++ V+ KGFGKR FR+ NR+G G+RA ++ L ++ VN D+++LV+ Sbjct: 725 PWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKF--KSKADRLASLRIVNPEDELMLVT 782 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +G +IR V I + SR+ GV + D+ +V+V + D E+ + Sbjct: 783 GRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAVALVPPPAEEDGLETVD 835 >gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365] gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365] Length = 891 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 540/896 (60%), Gaps = 59/896 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 +T V+I EM++S++ YA++VI+ RA+PD RDGLKPVHRRILF + WN+ Y+KC Sbjct: 6 NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++GQGNFGS+DGDPPAA RYTECR Sbjct: 66 ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A LL DL K+TVD++PNYD EP VL + PN+L+NG GIAVGMATNIP HN Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++D +A++++PD+ + L EI+ GPDFPTG +I GR GI+ A+ GRG++VIRG + Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAVVIRGRT 245 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E +R+ IVVTE+P+ VNK+ +E A LVR+KRI I+D+RDESDR+G RVV EL Sbjct: 246 QFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ V+LN L++ T+LQ+ F+VNM+A+ +P+ +L L+ F+ R VV RR Sbjct: 306 KRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRTVVRRRCL 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDL 433 + L +AR+R ++ GL +AV +D V+ IIR S + + A+ LM +R + Sbjct: 366 FELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERAGR 425 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 D + + G ++LS Q +AIL++RL RLTGL R+ + E L IL Sbjct: 426 PADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGILGD 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +L G+I EL ++D+ PRRT IV+ ++ DE I EDMVVT + GYVKR L Sbjct: 486 DVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTAL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y AQ RGGKG G D+DFV D+F+ STH +L F+++G VY++KV+ LP GS + Sbjct: 546 DEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRIS 605 Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ +N++ L E + ++P E ++L AT+ G V++ + F +I +G Sbjct: 606 KGRPFVNVIEALQPDEYVVGMLPVKEFT---DDLSAFMATRMGTVKKTVAAAFSRIRVTG 662 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ +D DE++ V + D+LL TK GQ +RF +R GR + GVRGI LA G Sbjct: 663 IKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPM-GREARGVRGIGLAGG 721 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M++ Sbjct: 722 DAVVGMSVFER------------------------------------------------- 732 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV E G+GKRT + R GKG+ ++ N G + V V ++D Sbjct: 733 --DCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERN--GPVSGVRLVGEDDH 788 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +I++S G LIR+ V +I + SRAT+GV + E+V S+ER+ E + ++E+ Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLAEPDDDADSEA 844 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 122/412 (29%), Gaps = 42/412 (10%) Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R +++++ D D T D + + Q + ++ + R + S Sbjct: 490 RGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTALDEYS 549 Query: 480 LGIEIKE--CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--------- 528 + + + R + Sbjct: 550 AQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRISKGRP 609 Query: 529 ----DEDCIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVV 570 E E +V + + +G VK+ + + R G G+ Sbjct: 610 FVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAFSRIRVTGIKAIGID 669 Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630 DE L VL + G + + ++ +ARG + + L G+ + Sbjct: 670 DGDELVEVRL--TRPDMDVLLVTKRGQSIRFQEDQVRPMGREARG---VRGIGLAGGDAV 724 Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--- 687 + F D ++ ++G +R LS + R GK + + + + V Sbjct: 725 VGMSVFERDCEDA----ILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNGPVSGV 780 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 +++ +++ + G+ +R + I R + GVR + L G+QV S+ + D D Sbjct: 781 RLVGEDDHVIMISSTGKLIRMRVRDI-PVQSRATQGVRLMRLDPGEQVASLERLAEPDDD 839 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D + D D + + + + E Sbjct: 840 ADSEAVTPELGDDDEIGNEVDEAGEGDAGADDADDSAADADAGTSEEGTEDE 891 >gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 830 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 390/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241 Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+ Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L Y SE Q +AIL+LRL ++T L ++ I E N L + KE Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + ++ +IK ELLS+++ RRT+I E ++ ED I +ED+VVT+SH GYV Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSNINMEDLINQEDVVVTLSHSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PLS Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG+ ++N+L L+ ERIT I+P + +NL + T HG V+++ LS F + Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + K D+V+S+ + + + Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + DQI++++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I + I Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826 >gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334] gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334] Length = 821 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 369/901 (40%), Positives = 559/901 (62%), Gaps = 87/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF S +R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMS-RGATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G+L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GSLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908 + +++++D G +IR V I R+T GV + +D ++V+ + + E+ E E+ Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEKEEVGTENET 817 Query: 909 T 909 Sbjct: 818 E 818 >gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] Length = 911 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 362/907 (39%), Positives = 534/907 (58%), Gaps = 67/907 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 3 SPQERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RY Sbjct: 63 FRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRY 122 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL D+ +TVDF N+DGS QEPVVL AR P +L+NG GIAVGMATN Sbjct: 123 TESRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG VA+IDNP + LME I GPDFPTGA I+G GI+ AYATGRGS+ Sbjct: 183 IPPHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVT 242 Query: 250 IRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DRE I++TE+PYQ NKAA++EKIA++V E R+ I+DLRDESDR Sbjct: 243 MRGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDR 302 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A V+LN LY+ T LQ+ F VNM+ L +P+ +L+ L+ F+ FR Sbjct: 303 DGMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFR 362 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+Y L KA++R H+L G IA+ NLD V+ +IR S + +A+ EL++ Sbjct: 363 IETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIE------ 416 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + S Q AIL+++L RLT L + I+ E +L +I Sbjct: 417 --------------------SYGFSATQADAILQMQLRRLTALEAEKIQQEHEALTEKIA 456 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL++R R+L IIK+E++ +++ RRT I D+ D I E + + V+ Sbjct: 457 DLEDILANRDRILAIIKEEVIQIRNAYANERRTLIKADENDLSDISLIANEQVAILVTEQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ + + AQ R +G+SG M+D+D + +H VLFFS G Y + ++ Sbjct: 517 GYIKRMLVDTFEAQNRATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQ 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S A+G L+ +L + + E++T+++ E + Y+V T+ G +++ LS F Sbjct: 577 IPESSRTAKGYPLVQMLPIPKEEKVTSVIGVSEFS---EDDYLVMLTQGGFIKKTALSAF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 +I +G IA+ L+ DE+ V T ++ +L+ ++ G + F +R GR + G Sbjct: 634 NRIRTNGLIAISLEDGDELRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPL-GRPTKG 692 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ +SL +GDQ+ISM I+ + + +++ Sbjct: 693 VKSMSLREGDQLISMDILPSQ----------------------------VVEEVEGAIDD 724 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + + ++L VS G GKR +FR+ NR+G G+ A + LVA Sbjct: 725 SDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKF--RKDGDELVA 782 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +D++++VS +G ++R V+ I + SR GV + D+ + +V + + Sbjct: 783 LRIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVPHLDES 842 Query: 904 DEAESTE 910 D +E Sbjct: 843 DNEMPSE 849 >gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] Length = 823 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 367/889 (41%), Positives = 541/889 (60%), Gaps = 85/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I SV++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEAKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ ++DNPD+ LME++ GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG I++ S +E+I++TE+PY VNKA ++E+I+EL R+KRI I LRDES R+G R Sbjct: 243 VRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VILN +Y+ T+LQS F NM+A+ P+ +L IL+ ++ ++EV+ Sbjct: 303 IVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL R+ I NE L I + D Sbjct: 414 -----------------FDFSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK+ELL + RRT ++ +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVVQIIKEELLDLGKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV + +RAQRRGG+G G+ + DEDFV L STH ++LFF++ G VYK K + +P Sbjct: 517 KRVANTEFRAQRRGGRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ ERI I+ Y+ F TK G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGIDSSERIQAIIAVKN--HEAAEQYLFFTTKLGVVKRTDVQAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L +DE+++V + I++ T G V F S +R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDM-GRAAAGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ AI+ Sbjct: 694 LREGDYVVGTAILTP--------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E +L ++E G+GKRT+S ++ + R GKGI+ +++ N G L + V+ Sbjct: 709 --------ESEVLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + I++++DKG +IR V + RAT GV + + +VV++ + Sbjct: 759 GEEDILVITDKGVIIRFNVATVSQTGRATLGVRLMKMENEAKVVTMATV 807 >gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 830 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241 Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+ Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L Y SE Q +AIL+LRL ++T L ++ I E N L + KE Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYV Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PLS Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG+ ++N+L L+ ERIT I+P + +NL + T HG V+++ LS F + Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + K D+V+S+ + + + Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + DQI++++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I + I Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826 >gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 823 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] Length = 869 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 363/904 (40%), Positives = 558/904 (61%), Gaps = 88/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y Sbjct: 3 DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 THNL EV+DGC+A ID ++++ LM+ I+ PDFPTGA I G G+K+A+ TG+G IV+ Sbjct: 183 THNLSEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGKGRIVL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE + E+I+++EIPY VNKA +++ IA+LV EKRI I+++ DESDRQG R+ Sbjct: 243 RGKAEIET-ENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++KR A++ V+LN+LY+ T+LQS FSVN +AL +P+ L ++KAFV R EVV+ Sbjct: 302 VVDVKRDANSSVVLNKLYKMTALQSSFSVNNIALVNGRPKLLNLKDLIKAFVDHRHEVVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA +RAH+L GL IA N+DEV+ II+ S +P A LM+R Sbjct: 362 RRTKYDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q+RAI+E+RL +LTGL +D +R E + I +I Sbjct: 412 ----------------FSLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + + +IK EL +KD+ R+T IV ++ ED ++M++T+SH+GY+KR Sbjct: 456 LENDDLCMKVIKDELQEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDFV ++ S H ++L F++ G Y KV+ +P G+ Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++G+A+ N+L++ +++ + + D N+ Y++F TK G +++ L + + Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ L D ++ V N++L+ + G+ +RF +A+RV GR + GVRG+ Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGM 694 Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +L D+V+ M + + Sbjct: 695 TLDDDSNDEVVGMVCIKDKEK--------------------------------------- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L VSE+G+GKR++ D+RI+NR GKG++ ++++ + G LVA+ Sbjct: 716 ------------ETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V + + I++++ G IR+ V+++ + RAT+GV + + K ++ + SV ++ + Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821 Query: 905 EAES 908 AE Sbjct: 822 IAEE 825 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 105/259 (40%), Gaps = 12/259 (4%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +K+ L Y R+ G + + +R++D + ++ + + + VL + G + Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + A G + L + + + ++ + V+ ++ G +R+ Sbjct: 677 HENAVRVMGRTASGVRGMT-LDDDSNDEVVGMVCIKD----KEKETVLVVSEQGYGKRSN 731 Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + D+ G + + + ++++++ T+ENDI++ K G +R +S + V G Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVI-G 790 Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVR I+L K D++ S+ VL + + + E Sbjct: 791 RATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEEKAQREALEDAAIHEHPIENTDFEDV 850 Query: 778 DSSVEGNISEERCQELKLK 796 VE N + + + + Sbjct: 851 SDDVESNENADDTEGTTEE 869 >gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 830 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241 Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+ Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L Y SE Q +AIL+LRL ++T L ++ I E N L + KE Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYV Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PLS Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG+ ++N+L L+ ERIT I+P + +NL + T HG V+++ LS F + Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + K D+V+S+ + + + Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + DQI++++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I + I Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826 >gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] Length = 866 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 356/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + +++ + I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM Sbjct: 1 MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSV Sbjct: 60 NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE RL K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNL EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ A Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+ +R IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +R Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R I E L Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I++ DIL+ R+ II QELL + ++ RRT + G + +++ ++ E+ V+ Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513 Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 ++H GY+KR+ S + Q RGG+G G+ D+DFV L STH ++LFFS G VY Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K K + +P QA+G +IN+L L+ GER+ ++ D ++ + + F TK G V+R Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKDS-LFFTTKLGTVKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +S+F I +SG A+ L D ++SV + +I++ + G V F S +R GR Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++L D V+ Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L + +L ++EKG+GK+T+ ++ I R GKG + +++S N G Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + V+ ++ I++ +D G +IR ++ I RAT GV + + +V ++ ++ + Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816 Query: 900 SEIVD 904 E + Sbjct: 817 EEDEE 821 >gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 830 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ + I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241 Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+ Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L Y SE Q +AIL+LRL ++T L ++ I E N L + KE Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYV Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PLS Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARG+ ++N+L L+ ERIT I+P + +NL + T HG V+++ LS F + Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI Sbjct: 648 RFAGIIAINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + K D+V+S+ + + + Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + DQI++++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I + I Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826 >gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 848 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 351/897 (39%), Positives = 538/897 (59%), Gaps = 84/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGM TN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNL EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG++ Sbjct: 183 IPTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ +EQIVVTE+PY VNKA ++E+I+EL R+K+I I +RDESDR+G R Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R ASA VILN LY+ T LQ+ FS NM+A++ P+ +L IL A++A + EV+ Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I E L I + D Sbjct: 412 ---------------NGYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T+++ GY+ Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L+ E+I T++ + N+ Y+ F T+ G V+R + +F I Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVRGEAGESND-YLFFVTRLGVVKRTAVKEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ +I++ T G V F + +RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ ++ Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 K+ +L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + I++ + +G +IR V+ + RAT GV + + +V ++ ++ E++++ Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816 >gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 824 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 379/906 (41%), Positives = 542/906 (59%), Gaps = 84/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I +E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + ILSS +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILSSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E ++ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVQEDVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV DILL TKLG +RF + +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ + Sbjct: 691 RGIKLNAGDVVVGAGVLNADE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+GFGKR + + + R GKG + ++ N+ G +V+V Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVSV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIE 818 Query: 904 DEAEST 909 ++A Sbjct: 819 EDATEE 824 >gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] Length = 869 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 372/900 (41%), Positives = 557/900 (61%), Gaps = 88/900 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + + +E I ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM Sbjct: 1 MAEDL---ENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGNFGS+ Sbjct: 58 LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSI 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R QK A +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG Sbjct: 118 DGDFPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGAS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P HN+ E ++ VA ID+ DI++ LM+ ++ PDFPTGA+I G TG++ A Sbjct: 178 GIAVGMATNMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIYGYTGVQEA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE RE I+VTEIPYQVNKA M+E+ AEL+ EK+I I++++ Sbjct: 238 FETGRGRIVMRAKAEIETNKE-RETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIK 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL +P+ L +++ Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGRPQLLNLKDLIRH 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R +VVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S PE AR LM++ Sbjct: 357 FVDHRHDVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQ 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I++E N L Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ IL S+ + IIK EL +K++ RRT IV DM ED I ED+V+ Sbjct: 451 MKTIEYLQSILDSKELRMQIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVI 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR P + YR Q RGGKG G R+EDF+ L + S H +LFF+ G + Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFW 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 +V+ +P GS ++G+A+ NI+++ + E+I + D+ N Y++ TK G ++ Sbjct: 571 LRVYEIPEGSRLSKGRAIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIK 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ D++L T ++I++ + G+ +RF +R G Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-G 689 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRG++LA D+V+ M V + Sbjct: 690 RTATGVRGVTLAHDQDEVVGMIAVDDPNVT------------------------------ 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L VSEKG+GKRT D+R++NR GKG++ V++ + Sbjct: 720 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTE--K 755 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GALVA+ V D D +++++ G +IR+ V+E+R+ RAT+GV + + ++ + SV +I Sbjct: 756 TGALVAIKNVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVAKI 815 >gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] Length = 852 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 370/889 (41%), Positives = 539/889 (60%), Gaps = 85/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + I ++I +EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRILFGM ++GV NK Sbjct: 3 EGENENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR L++GQGNFGS+DGD PAA R Sbjct: 63 PHKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A +L D+ KDTVD++ N+D S +EPVVL A+ P +L+NG GIAVGMATN Sbjct: 123 YTEARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGEV+ G +A I+N +I + LME + PDFPTG +I G G+K A+ TGRG IV Sbjct: 183 MAPHNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIV 242 Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG ++IE G E IV+TEIPY VNKA+M+EK A+L+ EK+I I+ +RDESDR G Sbjct: 243 MRGKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V ELKR A VILN LY++T LQ+ FSVN VAL +P L ++ +V R EV Sbjct: 303 RIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RRT+Y L +A RAH+L G IA+ +LDEV+ +IR S +PETAR L++R Sbjct: 363 VIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAIL++RL RLTG+ R+ I E + I+E Sbjct: 415 ------------------FDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + + + IIK EL +KD RRT I D ED I E++++TVSH GYV Sbjct: 457 EILENEDKRMEIIKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L+ YR Q RGG G GV +++DF LF STH +L F+ G ++ K + +P Sbjct: 517 KRTALTEYRTQGRGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G+ ++G+ + N++++ +RI +I+ + D NN ++V TK G +++ L + Sbjct: 577 GNKTSKGRPIQNLINIQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYS 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ + D++++V+ + I++ K G+ + FP +A+R GR + GV+ Sbjct: 637 RPRTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPM-GRTATGVKA 695 Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L + D VI M A Sbjct: 696 ITLTGQDDFVIGMVCASEDTAT-------------------------------------- 717 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L VSE G+GKR+ ++RI+NR GKG++A +V+ ++ GALVA+ Sbjct: 718 --------------LLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVT--DKTGALVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V D D +++++ G +IR+ ++ +RI RAT+GV + +++ SV Sbjct: 762 EVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 100/244 (40%), Gaps = 13/244 (5%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V V+ G +K+ L Y R G + +R++D + ++ + + ++ + G Sbjct: 619 VMVTKKGVIKKTTLEQYSRPRTNG--IIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAI 676 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + A G + ++L + +S + ++ +++G +R Sbjct: 677 HFPETAVRPMGRTATG---VKAITLTGQDDFV----IGMVCASEDTATLLVVSENGYGKR 729 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + L+++ NR GK ++ D+ ++++ T +D+++ K G +R + +R+ Sbjct: 730 SYLNEYRITNRGGKGVKAMNVTDKTGALVAIKEVTDADDLMIINKSGIIIRISMDTLRIM 789 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVR I + DQ+ S+ + + + E I + + + + T Sbjct: 790 -GRATQGVRLIKVGDSDQISSVEKITIEEVEEIEDIESSEASDSPDASDTANEAPETPGD 848 Query: 777 NDSS 780 + Sbjct: 849 EPND 852 >gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] Length = 835 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 351/888 (39%), Positives = 534/888 (60%), Gaps = 84/888 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K ARI G+ Sbjct: 1 MSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGD 60 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG++AIY+++ RMAQD+S R LL++G GNFGSVDGD AA RYTE R+ K A Sbjct: 61 VMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIAL 120 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDTVDF+PNYD + +EPVVL +R+PN+LVNG GIAVGM TNIP HNL EV+ Sbjct: 121 EMLRDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVIS 180 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +++NPD LME I GPDFPTGA+++G++GI+ AY TG G++ +R IE+ S Sbjct: 181 GLHLLMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAKVDIEEQS 240 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + +I+V EIPY VNKA ++ +IA+L REK+I I D+ DESDR+G R+ I+++R S Sbjct: 241 NGKSRIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSP 300 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN LY+ T +QS F+ NM+A+ P+ L IL+ ++ +E+V+ RRT + L KA Sbjct: 301 SVVLNNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKA 360 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 + RAH+L GL IA+ ++D ++ IIR S + E A+ LM Sbjct: 361 QARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNE-------------------- 400 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LS+ Q +AIL++RL RLTGL R+ + E I + DIL+ R+ I Sbjct: 401 ------YELSDKQAQAILDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSI 454 Query: 501 IKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 I QELL ++++ RRT ++ +L +EDED I E++V+ ++H GY+KR+P S ++ Q Sbjct: 455 IYQELLEIQEKFGDDRRTELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQ 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGG+G G+ + D+DF+ L STH VLFF+++G VY+ K + +P A+G +I Sbjct: 515 RRGGRGVQGMGVHDDDFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVI 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L L++GE+I T++ + E ++ ++ F T G V+R +++F I ++G A+ L Sbjct: 575 NLLDLSEGEKIQTVINV-DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLR 633 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 DE+L+V +I++ T G V F +A+R GR + GVRGI L D + Sbjct: 634 EGDELLNVSITDGNQNIIIGTHGGYAVSFSENAVRQM-GRTASGVRGIRLRDDDYAVGSD 692 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 ++ + Sbjct: 693 VLK-----------------------------------------------------PDSN 699 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 + +SEKG+GK+T + D+ I R GKGI+ +++++ N G+L + V+ + I++++DK Sbjct: 700 VFVISEKGYGKQTPASDYPIKGRGGKGIKTSNITEKN--GSLAGLTIVDGTEDIMVITDK 757 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 G +IR V + R+T GV + + D +V ++ ++ + + E Sbjct: 758 GVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQPEADDE 805 >gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] Length = 822 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 365/900 (40%), Positives = 555/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL I++ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RIAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G +RF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +++ N G+L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817 >gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] Length = 843 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 366/902 (40%), Positives = 550/902 (60%), Gaps = 87/902 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGS+DGD PAA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN DID D LM+ I+ PDFPTG I G +G++ AY TGRG IV+ Sbjct: 182 PTHNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIYGVSGVREAYETGRGRIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE ++I+V EIPY VNK ++EKIA LV EK++ I+ + DE+DR+G R+ Sbjct: 242 RAKTEIESHPT-HDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T LQS F+VN +AL +P +L +++ FV R EVV+ Sbjct: 301 VIDVKRDANASVVLNKLFKMTELQSSFNVNNIALVHGRPRLLSLKDLIRLFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ RAI+E+RL +LTGL ++ + E L +I +I Sbjct: 411 ----------------FQLTEVQARAIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS+ +IK ELL VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +R Q RGG G G RDEDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L++ +++T + D N+ YV+F TK+G +++ L + + Sbjct: 575 RTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V +NDI++ + G+ +RF +A+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+V+ M + Sbjct: 694 LDEDGQDEVVGMICIKDP------------------------------------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++ I+ +SE G+GKR+ D+R +NR GKG++ ++++ + G LVA+ Sbjct: 712 ---------QKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITE--KTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905 V D + +++++ G IR+ V ++RI RAT+GV + K ++ + SV ++ S+ ++ Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLGKRNDSIGSVCKVN-SDTEEQ 819 Query: 906 AE 907 E Sbjct: 820 ME 821 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 163/481 (33%), Gaps = 27/481 (5%) Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R I ++D I + + ++ ++ ++ I++ + + Sbjct: 373 RAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQARAIVEMRLRQLTGL 432 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + + + + + +V++ + + + +++ + Sbjct: 433 LQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFN 492 Query: 429 DLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD S LS+ +T+ + D I + + Sbjct: 493 PEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNT 552 Query: 485 K---------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 L + + + ++ + + T + + E Sbjct: 553 LLFFTQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSH 612 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 V+ + G +K+ L Y R+ G + + +R++D V ++ + ++ + Sbjct: 613 --YVLFCTKNGVIKKTVLEQYSRPRQNG--VNAITIREDDRVIEVRMTKGDNDIVIANRN 668 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G + + A G I L + + + ++ + ++ ++HG Sbjct: 669 GRAIRFNETAVREMGRTATGVRGIT-LDEDGQDEVVGMICIKD----PQKETIMVISEHG 723 Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R+ + D+ + NR GK L+ +++++++ T END+++ K G +R ++ Sbjct: 724 YGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVAIKSVTDENDLMIINKSGITIRLKVAD 783 Query: 713 IRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R+ GR + GVR I L K D + S+ V + E+I + +T Sbjct: 784 VRIM-GRATQGVRLIDLGKRNDSIGSVCKVNSDTEEQMEQILPDAANAEDNSAGENETGN 842 Query: 772 I 772 Sbjct: 843 E 843 >gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141] Length = 822 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 372/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE QT+AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] Length = 833 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 549/896 (61%), Gaps = 90/896 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V +ID+ + ++ +++II+GPDFPTG +ILG GI+ AY T Sbjct: 182 NIPPHNLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG + +R V+ IE + +I+V+E+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKVRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G RV IEL+R A+A+VILNQLY++T LQ F V M++L +P L+ +L ++ Sbjct: 302 NREGMRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNEPRVMNLLDMLNYYLE 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM+R Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+VQ++AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYKELMEK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E++ ++D+ RRT I D+ ED I R+D+V+T++ Sbjct: 456 IGELKAILADRKLLLGVIKEEIIIIRDKYGDERRTSIGFDEFDISMEDLIPRQDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ ++AQ RGGKG G+ +ED+V +LF+ +TH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMSNDTFKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG A+IN+L L E+IT ++P E + Y+ +TK G V++ ++ Sbjct: 576 YEIPEASRTSRGTAIINLLQLMPEEKITAVIPIEEYK---EGEYLFMSTKKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ E DI+L TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKYTNNERDIILITKYGQCIRFNERDVRS-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++LA D+VI M Sbjct: 692 VRGMNLADRDEVIGM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + +L VSEKG GKRT +F NR GKG++ +++ + G +V Sbjct: 707 --------QLDSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITE--KTGNVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V V+ +D+I++++ G +IR+ + I R T GV + + E V S+ ++R+ Sbjct: 757 VKAVDLDDEIMIINTGGIIIRMKCDNISSLGRVTSGVKLINLPDGETVASIAKVRK 812 >gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] Length = 822 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 823 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 820 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 364/898 (40%), Positives = 543/898 (60%), Gaps = 91/898 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I+DE++ S+L Y+++VI RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 5 EGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKSYS 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+ MGK+HPHG+++IYDA+ RMAQ++S R LI+G GNFGSVDGD AA RYTE Sbjct: 65 KSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ A ++L D+ KDTVDF PNYD +EP VL +++PN+LVNG GIAVGMATNIP Sbjct: 125 VKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDA--------LMEIIRGPDFPTGAVILGRTGIKNAYATG 244 HNLGEV+DG +ID + L+++I+GPDFPT +++G GI+ AY TG Sbjct: 185 HNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAYTTG 244 Query: 245 RGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RGS+ IR + IEK ++ QI+VTEIP+ VNK+ ++EKIAELV+EK+I I DLRDES Sbjct: 245 RGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLRDES 304 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+VIEL+R + +ILN LY++T ++ F +N++AL P+ TL +L+ F+A Sbjct: 305 NRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEYFIA 364 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 ++EV++RRT + L KA+D AH++ GL A+ +DEV+ IIR S N ETAR LM R Sbjct: 365 HQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTR--- 421 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 SE Q++AIL++RL RLTGL R+ + + L E Sbjct: 422 -----------------------FEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDE 458 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I L +L S + IIK EL ++ + D PRR+ I M+ ED I ED+V+TV+ Sbjct: 459 IAYHLAVLQSDKMVREIIKTELGEIRVKYDNPRRSIITIDTTKMDIEDLIADEDVVITVT 518 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KR+PL+ YR+QRRGG+G +G+ + DFV LFI STH +LFFS+ G VY+ + Sbjct: 519 HKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRA 578 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +P A+G A+IN+L+L+Q E+IT + + + ++ Y++ T+ G +++ L Sbjct: 579 HAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKDFK---DDSYLLTVTRKGIIKKTALE 635 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + G IA+ LD DE+++V ++DILL T G+ +RFP + +R GR + G Sbjct: 636 EYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPM-GRTARG 694 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L K + V+ + ++ D D + Sbjct: 695 VRGMKLGKKEYVVGVDVIGGYDKDME---------------------------------- 720 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +LT++E GF KRT +FRI NR G G+ V+K + G L Sbjct: 721 ----------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNK--KTGKLAG 762 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + V +++++++D G +IR V+ I + R+ +GV T +D +VV++ + + Sbjct: 763 IKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGEDNKVVALAKFVSKD 820 >gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14] gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14] Length = 876 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 375/907 (41%), Positives = 546/907 (60%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R LL++GQGNFGSVDGD PA Sbjct: 63 SNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + +EP V+ + PN+LVNG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNPDIDLD LM+ I+ PDFPTGA I G G++ AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE + + ++IVVTEIPY VNKA ++E IAELV+E +I I+++ DES RQ Sbjct: 243 RVVMRAKAEIE-SDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V++LKR ++A+VILN+L++ T+LQS FSVN +AL +P L +K FV R Sbjct: 302 GMRIVVDLKRDSNANVILNKLFKMTALQSSFSVNCIALVKGRPRLLGLKDCVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT+Y L KA++RAH+L GL IA N+DEVV IIR S P A+R L QR Sbjct: 362 DVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL D + E L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 ILS ++K ELL VK++ RRT I + ED + +V+TVSHLG Sbjct: 456 YNQILSDPELCKKVMKDELLEVKEKYGDARRTEIKYSSEEFNPEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS +R Q RGG G G R++DF +++ + H ++L F+ G Y K + + Sbjct: 516 YIKRTPLSDFREQARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L++ + + + + DE N+ YV+FATK+G V++ L Sbjct: 576 PEGDRNSKGRAIQNMLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ L DE++ V EN++++ + G+ RF + IR GR + GV Sbjct: 636 YSRPRANGVIAINLAEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTM-GRTATGV 694 Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L D V+ M V +AD Sbjct: 695 RGMKLDGDDDAVVGMVPVNNADV------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+RI+NR GKG++ +++ + G LVA Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITE--KTGRLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D + +++++ G IR+ V ++R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDENDLMIINKSGIAIRLSVADVRVMGRATQGVRLINLSKKNDIIASVCKVMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EASVEEE 828 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 110/274 (40%), Gaps = 15/274 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + V+ + G VK+ L Y R G + + + D + D+ + + ++ Sbjct: 611 EEFINSHYVIFATKNGTVKKTCLEAYSRPRANG--VIAINLAEGDELVDVRLTNGENELI 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + A G + + L+ + M + + V+ Sbjct: 669 IANRNGRACRFHENTIRTMGRTATG---VRGMKLDGDDDAVVGMVPVNNA---DVETVMV 722 Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ G +R+++ D+ NR +A+ + +++++ T END+++ K G + Sbjct: 723 VSEQGYGKRSQVEDYRITNRGGKGVKTLAITEKTG-RLVAIKNVTDENDLMIINKSGIAI 781 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R ++ +RV GR + GVR I+L+K + +I+ ++ ++ + + ++ Sbjct: 782 RLSVADVRVM-GRATQGVRLINLSKKNDIIA-SVCKVMSSELEASVEEESRAQWAKKSEE 839 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + S + +VE EE + + Sbjct: 840 IKADTTGSAASVETVESADDEEVKADTSDDNTPV 873 >gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 844 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 379/901 (42%), Positives = 557/901 (61%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + V I+ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL M ++G+ +K + Sbjct: 4 NKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF PNYDG EP V+ AR+PN++VNG GIAVGMATNIP Sbjct: 124 EARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E +D AV+D+PDI + LM I+GPDFPTG +ILGR+GI+ AY TGRGSI+ Sbjct: 184 PHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIIT 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+E+ + +IVVTEIPYQVNKA ++ KIA+LVREK++ I L DES+R G R+ Sbjct: 244 RSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ +V++NQL+R TSLQ+ F VNM+AL P++ + +L+ +V + +VVV Sbjct: 304 VIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVV 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA DRAH+L GL IA+ ++DE++R+IR S N AR LM+R Sbjct: 364 RRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMER---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q AILE+RL RLTGL RD I NE L I + DI Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ SR++ IIK EL VK+ PRRT I E MEDED I ED+V+T++ GY+KR Sbjct: 458 LANHSRVIQIIKDELTEVKNRFGDPRRTEISEADYSMEDEDLIPVEDVVITMTTNGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P Sbjct: 518 MPIDTYRTQNRGGRGVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAG 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L+L++ E++ ++P + + Y++F T++G V+R +S+F I + Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVNPES---ESEYLLFVTQNGLVKRTPMSEFDSIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ Sbjct: 635 NGKIAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRFHEDGIRAM-GRTASGVKGFNV- 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G V+ +A Sbjct: 693 DGSVVVGVATSRDGT--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSE G+GKRT+ ++R++ R KG++ ++++ + G LV+V VN + Sbjct: 708 --------HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQ--KTGDLVSVRAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAEST 909 + ++++++ G +IR+ V I I SR T+GV + + +DE V + + E E D AE + Sbjct: 758 EDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEEAEDTAEVS 817 Query: 910 E 910 E Sbjct: 818 E 818 >gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271] gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271] Length = 826 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 536/900 (59%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +SI +EM+ +YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K Y Sbjct: 2 QRDKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG++A+YD+L RM QD+SLR LI+GQGNFGS+DGD PAA RYT Sbjct: 62 KKSARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVV G +A+I+NP+I +D +ME I PDFPTG +I G G+K AY TGRG +VIR Sbjct: 182 PQNLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIYGYEGVKQAYRTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE IVVTE+PYQVNK ++EKI +LV +K+I IAD+RDESDR G R+ Sbjct: 242 ARAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V ++AL P+ T+ +++A++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLTIKEMMEAYILHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L+ A +AH+L GL I + NLDEV+ IR SPN A+ LM+R Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ++AILE+RL RLTG+ R I N+ I+E I Sbjct: 412 ----------------FALTEVQSKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R + IIK+ELL VK RRT IV + ED I +ED+V+TV+H G++KR Sbjct: 456 LANPERQMEIIKEELLRVKAVFGDERRTEIVPQEGEFSIEDMIAQEDVVITVTHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G + +DFV +FI STH +LFF+S+G + KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L +GE I + + + L++V AT G +++ ++ F + R Sbjct: 576 RTARGRSLANIMELQKGETIRAYINVKTFD---DPLFIVMATARGLIKKTEIEAFSRPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE++ E+DI++ G VRF +R GR ++GV+GI+L Sbjct: 633 NGIAAISIEDGDELIEARLTDGEHDIIMAKNSGYAVRFAERDVRAM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + ISM +D Sbjct: 692 DDEYCISMVTSKRSDTS------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + ++G LV + VND Sbjct: 709 ---------LLAVTDNGFGKRSLVDDYRLTRRGARGVITLKAHE--KVGNLVGLLDVNDG 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D +I+++ G + R V+ IR+ R T GV + + +++ + R+ +++ D + E Sbjct: 758 DDLIIITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKTDDPDVIDGPE 817 >gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] Length = 861 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 367/891 (41%), Positives = 534/891 (59%), Gaps = 55/891 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + ++I +EM+ SYL Y+++VI+GRA+PD+RDG KPVHRRIL+ M +MG++ NKKY KC Sbjct: 2 NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A++ G+ MG YHPHG++AIYD L R+AQ +SLR +I+GQGNFGSVDGDPPAA RYTECR Sbjct: 62 AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A +L D+ +TVDF PNYD S EP VL + PN++VNG GIAVGMATNIP HN Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++ + +++NP L +++ ++GPDFPTG I GR+GI NAY TGRG ++R + Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIYGRSGIANAYRTGRGRFLMRAKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ R I+VTEIPYQVNKA ++E++A+LV +K I +I+D+RDESDR G R+VIEL Sbjct: 242 SIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIEL 301 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRGA A ++LNQLY++T +Q FS+ +A+ +P L ++ F+ R +VV RRT Sbjct: 302 KRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRELPLPDAIRHFIDHRVDVVRRRTA 361 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDIKDL 430 YLL KAR+R H+L+G IA+ +LD V++IIR S + AR L Q R+ D Sbjct: 362 YLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEALA 421 Query: 431 IDLIDDSSYTIGS----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +D Y I + T+ LS Q AILEL+L RLT L D++ EL + I E Sbjct: 422 GVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERIAE 481 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +L +I +EL V+ RRT+IV+ +++ ED I E + VTVSH G Sbjct: 482 YESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSHSG 541 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR P+S YR Q+RGG GR G+ R+EDFV L + STH +L F++ G VY K++ + Sbjct: 542 YLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIYEI 601 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +GK++ ++L+L GE++ IM + ++ FAT++G V++ L DF Sbjct: 602 PDVGAAGKGKSIASLLNLQPGEQVRAIMAVRDLT--EEGKFIFFATRNGTVKKTPLKDFS 659 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G IA+ +D DE++ + L T G +RF + +R GR + GVRG Sbjct: 660 NVMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSM-GRPARGVRG 718 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L K D V+ MA D+ Sbjct: 719 IDLGKKDHVVGMAATPKDRGVGDDGKACAC------------------------------ 748 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL+V++ G+GKRT ++R+ R GKG+ + N G +V++ Sbjct: 749 ------------LILSVTQNGYGKRTDVDEYRLQTRGGKGVINVKTTAKN--GKVVSIQL 794 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+D +++++S G +IR+ +R A R+T+GV + + +++V + I Sbjct: 795 VDDTSELMVISQYGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAAAVVI 845 >gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] Length = 886 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 371/936 (39%), Positives = 557/936 (59%), Gaps = 122/936 (13%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +++ I ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKP HRRIL+ M +G+ +K Sbjct: 3 DQQGIIKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG++A+YD + RMAQD+S R L++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A ++ D+ K+TV+F+ NYDGS +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H LGEV+DG +A+ NPDI + LM+ I GPDFPT ILGR+GI+ AY TGRGS+++ Sbjct: 183 PPHQLGEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSLIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+T DRE+I+VTE+PYQVNKA ++EKIA+LVREK+I I DLRDESDR+G RV Sbjct: 243 RAKAEIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRV 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E++R A+A VILN LY+ TS+Q+ F VNM+A+ +P TL +L ++ ++E+V Sbjct: 303 VMEIRRDANASVILNNLYKQTSMQTTFGVNMLAIVSGRPRTLTLKEMLYHYLEHQKEIVR 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA R H+L GL IA+ +LDEV++IIR + + AR +LM+R Sbjct: 363 RRTQFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMER---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q++AIL++RL RLTGL R+ I E + + I E I Sbjct: 413 ----------------FELSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S LL +I+ EL VK+ + RRT I ++ EDED I +D+++T++ GY+KR Sbjct: 457 LESDEVLLELIRTELEEVKERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQRRGG+G G+ D D+VT L STH ++LFF++ G VY+ + + +P S Sbjct: 517 LTTDSYRAQRRGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFP--------------------------------- 637 ++G +IN++ + + E++ T++P Sbjct: 577 RTSKGVPIINLIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEE 636 Query: 638 -------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690 E+ ++F T+ G V+R+ LS + +IN++G IA++L DE+ SV Sbjct: 637 PEEALDAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLA 696 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + E+++ + G+ +RFPI+ +R GR + GV+ ++L+ VI M + Sbjct: 697 STEDEVFTVSNTGKAIRFPITNVRSM-GRGARGVKAMNLSADAIVIGMELARDEQD---- 751 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +L ++EKGFGK Sbjct: 752 -------------------------------------------------VLVITEKGFGK 762 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 RT +FR +R GKG+ A+ V+ +G +VA+ V+ +D I+++++ G +IR I Sbjct: 763 RTPMTEFRTQSRGGKGLIASKVTDR--VGQIVALRIVDVDDDIMIMTESGIVIRTDSQNI 820 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 R +GV + + +RV +V ++++ + V+E Sbjct: 821 SSVGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEE 856 Score = 77.9 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 106/254 (41%), Gaps = 15/254 (5%) Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 E + ++ ++ G VKR PLS Y + G + + ++D +T + + ST V Sbjct: 645 EVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNG--LIAIRLFEDDELTSVRLASTEDEV 702 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 S+ G + + + ARG +N ++ E + + V+ Sbjct: 703 FTVSNTGKAIRFPITNVRSMGRGARGVKAMN---------LSADAIVIGMELARDEQDVL 753 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCV 706 T+ G +R +++F +R GK + D I+++ ++DI++ T+ G + Sbjct: 754 VITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTESGIVI 813 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R I GRN+ GV+ I + +GD+V ++A + DA +E I + + Sbjct: 814 RTDSQNISSV-GRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIVLEEGETGSEEQPV 872 Query: 767 GDTEEITSLKNDSS 780 +E + + Sbjct: 873 STSEMNSESEQTEE 886 >gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 823 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 536/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRI++GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155] gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155] gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155] Length = 842 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 349/913 (38%), Positives = 524/913 (57%), Gaps = 92/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + ++N + +A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + ++Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D+ RRTRIV ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KLSDF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ + D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNEDDRLLSLNVVRP------------------------------ 720 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRTS ++ + R GKGI Sbjct: 721 -----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + + G+LV V+D+ ++ ++ G +IR ++R A R TKGV + + A+ + +++ Sbjct: 758 R--KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIA 815 Query: 894 VERIRESEIVDEA 906 + R + + E+ Sbjct: 816 IARNADEDEAAES 828 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 91/237 (38%), Gaps = 13/237 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ LS + + R GG + +R+ D + + S +L Sbjct: 616 KSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGG--IVAINLREGDELVGAVLCSAEDDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + + P R + + + N+ +R+ ++ + Y++ Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNEDDRLLSLNVVR------PDTYLLV 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R GK + + ++ + ++ T G +R Sbjct: 727 ATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTGGVIR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R AGR + GVR ++LA+GD +I++A D + + Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLAEGDTLIAIARNADEDEAAESISESDADTAESPEA 842 >gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] Length = 861 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 366/899 (40%), Positives = 532/899 (59%), Gaps = 89/899 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + +E E + M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MSEEVKHFEETFES----TDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R LI+G GNFGSV Sbjct: 57 SELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K A +L D+ KDT++FR NYD + +EP VL AR PN+LVNG Sbjct: 117 DGDGAAAMRYTEARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGAT 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+ ++ NPD+ LME + GPDFPTG ++LG++GI+ A Sbjct: 177 GIAVGMATNIPPHNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI +RG IE+ +E+I++TE+PY VNKA ++E+IA+L EK+I I L Sbjct: 237 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLN 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIE++R SA V+LN LY+ T LQS F NM+A+ +P+ +L IL+ Sbjct: 297 DESDRVGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRH 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +EEVV RR+ + KA DRAH+L GL IA+ ++D +V I+R S + + A+ M Sbjct: 357 YLDHQEEVVRRRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNE 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++R+ RLTGL R+ I E N L Sbjct: 417 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYNEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMV 539 I+ +L+S II+QELL ++ D PRRT ++ G EDED I +ED+V Sbjct: 451 QATIQYLEKVLASEELRYEIIEQELLEIQQRFDNPRRTELLVGEALSLEDEDLIEQEDVV 510 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++ GY+KR+ + ++AQRRGG+G G+ + D+D+V ++ STH S+LFF++ G VY Sbjct: 511 ITLTKNGYIKRLANTEFKAQRRGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVY 570 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P S A+G +IN+L+++ E+I I+ PE S Y+ F T G V+R Sbjct: 571 QAKGYEIPEYSRTAKGLPVINLLNIDSAEKIQAIISVPE--SDETERYLFFTTLRGTVKR 628 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +LS+F I +G A++L DE++ V + + I+L T G V F +R GR Sbjct: 629 VRLSEFKNIRTNGLRAIQLREDDELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAM-GR 687 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+SL GD VI M I+ Sbjct: 688 TASGVRGVSLRDGDYVIGMDILTP------------------------------------ 711 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +L VSEKG+GKRT++ ++ + R GKG+R +++ N G Sbjct: 712 -----------------DNEVLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKN--G 752 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV + V ++ ++++++KG +IR ++ R GV + +D V S+ + Sbjct: 753 PLVCLRTVTGDEDLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSLAIVD 811 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 98/268 (36%), Gaps = 15/268 (5%) Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 + E + + G VKRV LS ++ R G + +R++D + + + S + Sbjct: 606 SVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNG--LRAIQLREDDELIRVVVTSGND 663 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 ++ + G ++ A G +++ + + + P + Sbjct: 664 GIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDGDYVIGMDILTP---------DNE 714 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704 V+ ++ G +R S++ R GK L ++ + T T + D+L+ T G Sbjct: 715 VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLVCLRTVTGDEDLLIMTNKGV 774 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +RF + GR ++GVR + L + V S+AIV + + + Sbjct: 775 IIRFHAEDV-SQTGRGALGVRMMRLDQDAIVSSLAIVDREEETEEGSEATDSSTESVATE 833 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQE 792 + ++K + + E Sbjct: 834 NPTASLSDEAIKGNMKDFAQQLVDEENE 861 >gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56] Length = 836 Score = 861 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 357/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 7 NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA R Sbjct: 67 PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G R Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL RLTGL RD I E L I + D Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLAD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548 IL+ R+ II++EL VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+ Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L L+ GE+I TI+ D+ Y+ F T++G V+R S F I Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++ Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVN 696 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ + + Sbjct: 697 LREGDYVVGTSRID---------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +++++D G +IR V I RA +GV + + ++V+ + +E ++ Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDA 821 Query: 909 TE 910 E Sbjct: 822 PE 823 Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR S + R G + +RD D + ++ S V+ + LG+ + K Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +N+ + ++ V+ +++G +R + Sbjct: 679 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 729 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R G M + R ++ + + D+++ T G +R ++ I GR Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + GV+ + L Q+++ A+V D + + + Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 828 >gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 823 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I+ D Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR +++ R+T GV + A V S+ + + Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817 Query: 906 AESTE 910 TE Sbjct: 818 EPETE 822 >gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GFLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis] Length = 845 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 354/894 (39%), Positives = 540/894 (60%), Gaps = 86/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNFLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815 >gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301] gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301] gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] Length = 856 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 359/906 (39%), Positives = 530/906 (58%), Gaps = 69/906 (7%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGS+D DPPAA RYTE Sbjct: 64 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123 Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 RL+ LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN E++ G +A+I NP+I LM I GPDFPTG +LG GI++AY TG+GSI +R Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMR 243 Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ I+ R+ I++TE+PYQ NKAA++E+IAE+V EKR+ I+D+RDESDR G Sbjct: 244 GVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDG 303 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKR A V+LN LY+ T LQS FS NM+AL +P TL L+ F+ FR E Sbjct: 304 MRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIE 363 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR S + A++EL+ Sbjct: 364 TIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELI--------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSEVQ+ AIL+++L RLT L + I E L I++ Sbjct: 415 -----------------DVYGLSEVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDY 457 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R R+L II+ EL ++ PRRT ++E ++E D I E ++ ++ GY Sbjct: 458 RDILARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGY 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + AQ RG +G++G +D+D V H ++LFFS G VY +R+P Sbjct: 518 IKRMPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIP 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG ++ +L + + ERIT+I+P ++ Y+V T+ G +++ LS F Sbjct: 578 AASRNARGVPIVQLLPIPREERITSIVPVSAFS---DDEYLVMLTQGGYIKKTALSAFAN 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725 I +G IA+ L D++ V E+ IL+ ++ G + F S +R GR + GVR Sbjct: 635 IRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPL-GRATRGVR 693 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL GD +ISM ++ + + + + Sbjct: 694 AMSLRSGDTLISMDVLPASLTANMT----------------------------ETGDEDE 725 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +++ + + ++L V+ +G GKR + FR+ R+G G+RA ++ LV++ Sbjct: 726 ADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKF--RSKQDELVSLR 783 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIV 903 V D+++++S + +IR + I SRA GV + D+ + +V + E E+ Sbjct: 784 IVESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGEEELD 843 Query: 904 DEAEST 909 + +E Sbjct: 844 ETSEDA 849 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 18/255 (7%) Query: 668 INRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 L D E+ +++ E ILL T+ G R P++ R + G G Sbjct: 480 QRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGYIKRMPVNEF-TAQSRGTRGKAG 538 Query: 727 ISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 D V ++ + D + Y E Sbjct: 539 AKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLPIPREE 598 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 I+ +++++ +++ G+ K+T+ F +N G+ A +S+ L Sbjct: 599 RITSIVPVSAFSDDEYLVMLTQGGYIKKTALSAF--ANIRSNGLIAIALSEG---DQLRW 653 Query: 844 VFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900 V D I++ S KG I +++R RAT+GV S + ++S++ + S Sbjct: 654 VRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASL 713 Query: 901 -----EIVDEAESTE 910 E DE E+ + Sbjct: 714 TANMTETGDEDEADD 728 >gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 831 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 366/893 (40%), Positives = 549/893 (61%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +E RI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ N Sbjct: 705 -----DKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + I++++ KG +IR V+ I R+T GV + D ++V+ ++ + Sbjct: 758 EDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810 Score = 94.9 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S G+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 +D ++ ++ G + R+ EI RA KG+ + + E + ++ ++ +I+D Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 17/237 (7%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + + G VKR +S + R+ G + +++ D + ++ + + ++ + Sbjct: 608 DKYFFFTTKQGIVKRTEVSEFSNIRQNG--LRALNLKEGDELINVLLTNGQEDIIIGTRS 665 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G+ + + A G + + L + + + V+ T++G Sbjct: 666 GYSVRFNEATIRGMGRSATG---VRGVKLREEDW------VVGASRINDKQEVLVITENG 716 Query: 656 NVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 +R +++ + + ++ + T DI++ T G +R +S Sbjct: 717 YGKRTSAAEYPTKGRGGKGIKTANITAKNG-QLAGLMTVDGNEDIVVITTKGVIIRTNVS 775 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +I GR+++GV+ + L ++++ +V D D ++ S + Sbjct: 776 SI-SQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDNDPTAITQTDTALAEAPINSSKE 831 >gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A] gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A] Length = 867 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 543/911 (59%), Gaps = 89/911 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E+ ++ I V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM Sbjct: 1 MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + + N + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++G GNFGSV Sbjct: 57 HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K A ++ D+ K+TV+F NYDGS +EP VL +RYPN+LVNG Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D A +DNPDI + LM+ I+GPDFPTG ILG TG++ A Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQILGITGLRQA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I +R I +T +R ++++TEIPYQVNK ++E+IAE+V+ K I I+DLR Sbjct: 237 YETGKGIIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+VIEL++ + V LN LY++T LQ+ F +NM+AL +P +L L Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A + E++ RRT++ L KA R H+L L A+ ++D V++II+ + NPE AR L+ Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIA- 414 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 T +E+Q R+IL ++L RLTGL D I E ++L Sbjct: 415 -------------------------TYDFTEIQARSILTMQLQRLTGLEIDKIHEEADNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMV 539 +I E IL + IIK EL +KD+ D PR + + D+++ED I ED+V Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDIV 509 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTV++ GY+KR+ L Y+ Q RGG G SGV + D+DFV + + STH LFF++LG V+ Sbjct: 510 VTVTNNGYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K K + LP GS Q++G ++N L+ GE++ + + + + Y+ F TK G V+R Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFD--AEDHYLFFVTKRGIVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++++ I ++G IA+ L DE+L ++ ILL G+ + F + IR GR Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREI-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ + ++++ A+V + D Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 IL ++E G+GKRTS ++R+ NR GKG++ +V+ N G Sbjct: 715 --------------------ILVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKN--G 752 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + V +++ II+VSD+G IR+P+++I RAT+GV I + D++V ++ + Sbjct: 753 KLKTLRKVTNDEDIIVVSDRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812 Query: 900 SEIVDEAESTE 910 E +E S E Sbjct: 813 QEPEEEVVSNE 823 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 68/429 (15%), Positives = 145/429 (33%), Gaps = 25/429 (5%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFS--------PNPETARRELMQRSWNASDIK 428 +A + AH + + + D + II+ +P + L + ++ Sbjct: 443 HEEADNLAHKITEYKQILGDEDLKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDL 502 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 ++ I + G M L E + + + ++ + D + + + + Sbjct: 503 IPVEDIVVTVTNNGYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFF 562 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED---EDCIVREDMVVTVSHL 545 L +L G + G +D + + V+ Sbjct: 563 TNLGRVFKLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDAEDHYLFFVTKR 622 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VKR ++ Y+ R+ G + +R++D + + H +L +S G Sbjct: 623 GIVKRTHINNYKNIRQNG--IIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETD 680 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + A G + + + E I E ++ T++G +R ++++ Sbjct: 681 IREIGRTATG---VRGMDIPDDEEIVGFAVVDGIEDD-----ILVITENGYGKRTSITEY 732 Query: 666 IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 NR GK L+ D+ ++ T + DI++ + G +R PI I R + Sbjct: 733 RLQNRGGKGVKTLNVTDKNGKLKTLRKVTNDEDIIVVSDRGITIRMPIDQI-SQTKRATQ 791 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR I+L +V ++AIV H + + + Q L + Sbjct: 792 GVRIITLKGDQKVSTIAIVDHQEPEEEVVSNEAVVTQEQMALSNQKKVLEVVELEALEES 851 Query: 783 GNISEERCQ 791 + + + Sbjct: 852 VDEEDTKNA 860 >gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39] gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39] gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] Length = 822 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 370/902 (41%), Positives = 551/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+ G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRCVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] Length = 848 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 365/893 (40%), Positives = 547/893 (61%), Gaps = 86/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGS+DGD AA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG I G +G+++AY TGRG +V+ Sbjct: 182 PTHNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE ++IVVTEIPY VNKA +++ IA+L +K+I I+++ DE+DR+G R+ Sbjct: 242 RAKAEIESHPT-HDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R EVV+ Sbjct: 301 VIDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMAR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS+ +IK ELL VK++ RR+ IV + ED ++MV+T+SH+GY+KR Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDNRRSEIVYASEEFNPEDFYADDEMVITISHMGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G R+EDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIEADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M + + Sbjct: 694 LDEDGQDEVIGMICIKDPET---------------------------------------- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + I+ VSE G+GKR+ D+R +NR GKG++ +++ ++ G+LVA+ Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGSLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 V D + +++++ G IR+ V ++RI RAT+GV + K ++++ SV ++ Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVA 813 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 103/244 (42%), Gaps = 12/244 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + A G I L + + + ++ + ++ +++G Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGQDEVIGMICIKD----PETETIMVVSENGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGSLVAIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I L K DQ+ S+ V + + ++ Q Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVASENEEEVQQEEETPATDIQPADGETIQPATD 844 Query: 774 SLKN 777 Sbjct: 845 EPNE 848 >gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R] Length = 845 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 354/894 (39%), Positives = 541/894 (60%), Gaps = 86/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815 >gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] Length = 877 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 389/894 (43%), Positives = 545/894 (60%), Gaps = 67/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+S+ Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIAREDVVVTLSNA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPV----------------------------- 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 DE + E I + T G + + FA S G+ Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTSLDQ---FANVRSNGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ + Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFNEDKVRAMGRTAAGVRGMKLADE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 840 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 67/427 (15%), Positives = 155/427 (36%), Gaps = 29/427 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ + H+L + + E + +R + A Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELETVRDAFGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 524 SHDIDMEELIAREDVVVTLSNAGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFNEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + + + D + T Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEAELPEGEEAEAAESTTETSAEDAQTPT 870 Query: 774 SLKNDSS 780 + + Sbjct: 871 ADSDTEE 877 >gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] Length = 841 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 21 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 81 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 653 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 712 EGDTVVGAS--------------------------------------------------- 720 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 721 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836 >gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] Length = 861 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 375/899 (41%), Positives = 546/899 (60%), Gaps = 92/899 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I ++I DEM+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM +GV N+ Y Sbjct: 3 DGEKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQ WSLR L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K A +LDDL K+TVDF PN+D S QEP VL ++ PN+LVNG GIAVGMATN+ Sbjct: 123 EARLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVD + +DN DI+ + L++ ++ PDFPTG +I G G ++A TGRG IVIR Sbjct: 183 PHNLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIYGVDGARDALLTGRGRIVIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ SG REQI+VTEIPYQVNKA M++K A+LV +K+I I+D+RDESDR G R+V Sbjct: 243 AKAEIEE-SGGREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELKR A +V+LN+LY+YTSLQS FS+N + L +P L ++ FV FR EVVVR Sbjct: 302 YELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDGRPRLLNLREMITEFVKFRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA +RAH+L GL IA N+DEV+ IIR S +PE AR LM+R Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS++Q+RAI+E+RL +LTGL +D +R E L I + DIL Sbjct: 411 ---------------FALSDLQSRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK EL+ ++ + RR+RI +M+ ED I E++V+T+SH GY+KR Sbjct: 456 AREERRMQIIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L ++ Q RGG G G RD+DF+ LF+ + H +L F+ G + +V+ +P G+ Sbjct: 516 NLDEFKVQSRGGMGSKGSTTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L++ Q ++I + + D+ N ++V TK G +++ L + + Sbjct: 576 TAKGRAIQNLLNIEQDDKIKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L N+++L TK G+ +RF + +R GRN+ GVR ++L Sbjct: 636 ANGINAITIRENDELLEARLTDGTNEMVLATKAGRAIRFNEAKVRPM-GRNASGVRAVTL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+V+ M V Sbjct: 695 QNDTDEVVGMICVKDNT------------------------------------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIGAL 841 + I+ VSEKG+GKR+ D +RI+NR GKG++ +++ ++ G L Sbjct: 712 ---------ETIMVVSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINIT--DKTGPL 760 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +A+ V D D +++++ G IR+ ++ IR+ RA +GV + + + +V R+ S Sbjct: 761 LAIKTVADEDDLMIITKAGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVARVPRS 819 Score = 81.4 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 92/207 (44%), Gaps = 18/207 (8%) Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760 RF +S ++ S + + L + D++ + A ++ D + + + Sbjct: 410 RFALSDLQ------SRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQ 463 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + D S +E + SE + ++L E+ ++T+S G+ KRT+ +F++ Sbjct: 464 IIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRTNLDEFKVQ 523 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 +R G G + + + + L F +++ +++ ++KG + V E+ ++ KG Sbjct: 524 SRGGMGSKGSTTRDKDFLEHL---FVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKGR 580 Query: 881 VIFST---AKDERVVSVERIRESEIVD 904 I + +D+++ + ++++ + Sbjct: 581 AIQNLLNIEQDDKIKAYVKVKDLTDKE 607 >gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL ++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDTYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA] gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200] gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA] gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200] gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Streptococcus pneumoniae AP200] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 841 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 21 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 81 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 653 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 712 EGDTVVGAS--------------------------------------------------- 720 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 721 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836 >gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4] gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae TIGR4] gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14] gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974] gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2] gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A] gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4] gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14] gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54] gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHXAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVT PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6] gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585] gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B] gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6] gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585] gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B] gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570] gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] Length = 878 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 381/896 (42%), Positives = 542/896 (60%), Gaps = 70/896 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+L+NG GIAVGMATNIP HN Sbjct: 127 MAKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+DGC+A I++ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+V EIPYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R+VIE Sbjct: 247 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +IRF+ P A+ L+ + W + +++ Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL+ +I++ELL++K + RRT I E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLMEVIREELLAIKAQYSDARRTEITENTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P Sbjct: 607 LPEASRGARGRPIVNLLPLEQNERITAILP------------------------------ 636 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724 V + + + T G + + R S G+ Sbjct: 637 ---------------------VREYEEGLYVFMATASGTVKKTALQDFSRPR----SAGI 671 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++L GD++I V D + + + + + + T+ Sbjct: 672 LAVNLNDGDELIG---VDLTDGSNEVMLFSAEGKVVRFAEEAVRSMGRTATGVRGIKLNG 728 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + E ILTV+E G+GKRT+ ++ I +R+ +G+ + VS+ N G ++ Sbjct: 729 EDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIKVSERN--GNVIGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E Sbjct: 787 IQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEP 842 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 91/244 (37%), Gaps = 15/244 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L + R G + DE DL V+ FS+ G Sbjct: 645 YVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + + A G + + LN +++ +++ ++ T++G Sbjct: 703 VVRFAEEAVRSMGRTATG---VRGIKLNGEDKVVSLI------IPRGEGEILTVTENGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R +++ +R+ + + + + + + I++ T G VR +S + Sbjct: 754 KRTAENEYPIKSRATQGVISIKVSERNGNVIGAIQVEPTDQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I A+ ++V+ + V + D D+ + + + +S Sbjct: 813 SVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDDEDGLAAEGEEVKSDSTDLPDANSS 872 Query: 775 LKND 778 D Sbjct: 873 ESVD 876 >gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum IPO1609] gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum IPO1609] Length = 842 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 361/873 (41%), Positives = 531/873 (60%), Gaps = 65/873 (7%) Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++ Sbjct: 2 HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGSVDGD AA RYTE RL K AH LL D+ K+TV+F PNYDGS EP +L AR P Sbjct: 62 GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIP 121 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+L+NG GIAVGMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREK 291 G +G++ Y TGRG +V+R +H E + Q I+V E+PYQVNK +LE+IAELV EK Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEK 241 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 R+ I+D+RDESD+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L +L+ F+ R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456 A++ELM RSW++ ++D++ + + + + DG LS+ Q + Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421 Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516 IL++RL RLTGL +D I E + +I + LDIL+ R+ II +EL ++ E R Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481 Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576 R++I +++ ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D+ Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 + LF+ +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696 + + +V AT G V++ L++F ++G IA+ LD D ++ + ++D+ Sbjct: 602 KQFD---EQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L + G+ VRF + +R GR + GVRG++L +G QVI+M + A E+ Sbjct: 659 MLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LT +E G+GKRT + Sbjct: 718 -------------------------------------------VLTATENGYGKRTPISE 734 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R KG+ A S+ N G +VA V D+I+L++ G LIR V+EIR RA Sbjct: 735 YTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRA 792 Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 T+GV + + + ++ ++R+ ES+ E + Sbjct: 793 TQGVTLIAVGEGNKLSGLQRVVESDAEGEDAAD 825 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 13/244 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ L+ + R+ G + + DF+ I V+ F Sbjct: 604 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 661 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648 S G + + QARG +N L +G+++ ++ P + + V Sbjct: 662 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 718 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705 + AT++G +R +S++ + R G IA++ ++++ E++I+L T G Sbjct: 719 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 778 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + IR GR + GV I++ +G+++ + V+ +DA+ ++ + + Sbjct: 779 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGVTESDGEAPSA 837 Query: 766 SGDT 769 Sbjct: 838 DTTE 841 >gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] Length = 914 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 375/913 (41%), Positives = 536/913 (58%), Gaps = 66/913 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + E + ++I +E++ SYLTYA++VI+ RA+PD RDGLKP RRIL M Sbjct: 1 MSIAVATPPPSEPREPLPLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ KCA I GE M +YHPHG+ +IY LARMAQ W++R LL+ GQGNFGS+ Sbjct: 61 LDLGLTPGGSTSKCAGIVGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 G PPAA RYTE +L A +LDD+ DTVDF+P+YD QEP VL AR+PN+LVNG G Sbjct: 121 HGLPPAAMRYTEAKLSPVAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGEV D +A+IDNP ID + L+E + GPDFPTG VI GR GI+ A Sbjct: 181 GIAVGMATSIPPHNLGEVCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVICGRMGIREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG IV+R +E+T R QIV TEIPYQ+ K +L+K+ +LV RI IAD+ Sbjct: 241 YLTGRGRIVLRAKHVVEETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVV 300 Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DESD RQ R+V++LKR +VILNQLY+Y+ LQ F V M+AL +P+ TL +LK Sbjct: 301 DESDRRQPVRIVVKLKRNEDPNVILNQLYQYSPLQDTFGVIMLALVDGRPKTLTLRELLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ R V+ RRT +LL + R RAHV+ GL IA+ +DE++ IIR SPNP AR LM Sbjct: 361 IYLDHRANVIRRRTAFLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMG 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + ++ ++ + T L+ Q AIL +RL +LTGL D + E Sbjct: 421 MAVGPDVMRRALN-------DPEAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRE 473 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDM 538 L I + DIL+ R+ IIK +L +K + PRRT I + + E I E M Sbjct: 474 LRAAIADAEDILAREVRVREIIKADLEELKRKYADPRRTVISDEELGSYDKEALIREEYM 533 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT++ GY+KR+P S YRAQ RGG+G++ ++ DF+ +F+ TH +LFF+ G + Sbjct: 534 VVTITDGGYIKRLPPSTYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLI 593 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + KV+ +PI A G+A++N+L L +GERIT ++P +N ++ AT+ G V+ Sbjct: 594 HWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFP---DNEFLFMATRRGTVK 650 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS + + R G IA+ L+ D++++V + ++L+T+ G +RF S +R G Sbjct: 651 KTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPM-G 709 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRGI L DQV+ M + D Sbjct: 710 RPACGVRGIRLEGDDQVVGMVVANGPDDPAS----------------------------- 740 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LTV GFGKRT ++R +R GKG+ ++ N Sbjct: 741 ---------------------LLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIKTTERN-- 777 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA+ V D D+++L +++G LIR ++E R R T+GV + + +RVV++ ++ Sbjct: 778 GPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRVVALAKLP 837 Query: 899 ESEIV-DEAESTE 910 ESE+ D+ + E Sbjct: 838 ESELSQDQPDVAE 850 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 12/268 (4%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PLS Y +RGG + + + D + + V+ Sbjct: 634 FPDNEFLFMATRRGTVKKTPLSAYSRPQRGG--IIALGLEEGDQLIAVARTQPGDHVILS 691 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + + P R + + L +++ ++ + ++ Sbjct: 692 TRNGMAIRFEESDVR---PMGRPACGVRGIRLEGDDQVVGMV---VANGPDDPASLLTVC 745 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709 +G +R +LS++ +R GK + + + + V T ++++LTT+ G +R Sbjct: 746 SNGFGKRTRLSEYRAQHRGGKGLIDIKTTERNGPVVAIAKVTDADEVMLTTERGILIRTG 805 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S R GRN+ GVR I + +GD+V+++A + ++ D+ Sbjct: 806 LSETRDI-GRNTQGVRLIRVDEGDRVVALAKLPESELSQDQPDVAEVEPPPDSNAPPLAP 864 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797 + +++ + K +E Sbjct: 865 SDRLLANGILALDDLSGTDSASHEKEEE 892 >gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEELDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDSS--DDAYLFFTTRHGIVKRTSIKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026] Length = 829 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 367/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814 >gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] Length = 850 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 356/902 (39%), Positives = 530/902 (58%), Gaps = 64/902 (7%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 5 QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124 Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL A + LL D+ +TVDF N+DGS QEPVVL +R P +L+NG GIAVGMATNIP Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++DG VA+I NPD+ L I GPDFPTG ILGR GI+ AY TGRGSI +R Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244 Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE DR+ I++TE+PYQ NKAA++EKIA+LV +++I I+D+RDESDR G Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKR A V+LN LY+ T LQS F NM+AL +P TL L+ F+ FR E Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + + +A+ L+Q Sbjct: 365 VITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQ-------- 416 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSEVQ AIL+++L RLT L + I+ E L +I + Sbjct: 417 ------------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ + R+ II++EL +K TPRRT I + ++ + D I E ++ V+ GY Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + +Q R +G++G M+++D + H SVLFF+ G VY + +P Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 GS ARG ++ +L + +GE+IT+++ E + Y++ T+ G +++ L+ F Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSEFS---EDNYLIMLTQKGFIKKTALAAFSN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725 I +G IA+ L+ D++ V +E+ +++ ++ G + F +R GR + GV+ Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSL-GRATKGVK 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L GD++ISM I+ + + Sbjct: 695 SMKLRSGDELISMDILPSQIVAQIAESNEEETEDESEEIN-------------------- 734 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E+ ++L ++ G GKR R+ NR+G G+R K N L A+ Sbjct: 735 -----PEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKN--DKLAALH 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN +++ ++++++G +IR V+ I SR+ G+ + +D+ + +V + S+ + Sbjct: 788 VVNPHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEES 847 Query: 906 AE 907 + Sbjct: 848 ED 849 >gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 864 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 390/898 (43%), Positives = 539/898 (60%), Gaps = 71/898 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K + V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 EFAKEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL D+ K+TVDF NYDGS +EP V R PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ EVVD CVA+ID+P I + LME + GPDFPT AVI G TGI AY TGRG I + Sbjct: 183 PPHNMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAAVINGATGIHEAYHTGRGRIYL 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R SH+E R+ +VVTE+PYQVNKA +LEKIAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG +VILN LY++T +Q++F +NMVAL +P L +L+AF+ R EVV Sbjct: 303 MVIELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQPRLLDLKQVLEAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S +P A+ LM R+W + + + Sbjct: 363 TRRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDE 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ ++ YLS+ Q +AIL+LRL RLTGL ++ + +E L Sbjct: 423 MLARAGAATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL S RL+ +I+ ELL ++++ RRT I+E LD+ ED I ED+VVT Sbjct: 483 EKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLTLEDLITEEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K P+S YRAQ+RGG+G+S +DEDFV L + STH ++L FSS G Y Sbjct: 543 LSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRGKAYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP GS ARGK ++N+L L +GERI I+P Sbjct: 603 KVYELPQGSRAARGKPIVNLLPLEEGERINAILP-------------------------- 636 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRN 720 V ++ + ++T G + P+ R Sbjct: 637 -------------------------VREYLEDLYVFMSTSSGTVKKTPLVDFSRPR---- 667 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S G+ + L GDQ++ +AI + + A R + Sbjct: 668 SNGIIAVDLRDGDQLVDVAITD----GSRDVMLLTSAGKAIRFSEEQVRPMGRTACGVRG 723 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 V + + + E +L +E G+GKRT DF + R G+G+ A N GA Sbjct: 724 VRLAEDQRVISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAIQTGGRN--GA 781 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V V D D+++L++D GTL+R PV +I + R T+GV + E +V + R+ Sbjct: 782 VVGATLVADEDEVMLITDGGTLVRTPVADISVLGRNTQGVRLIRLTDQEHLVELARVA 839 Score = 79.1 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 7/173 (4%) Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + ++V+S +L D + + + R + E + + + + + Sbjct: 470 EQEKVVSEYKELLEKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLT 529 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L +E ++T+S G+ K +R R G+G AT + + LV + Sbjct: 530 LEDLITEEDVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLV---VCST 586 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899 +D I+ S +G + V E+ SRA +G I + + ER+ ++ +RE Sbjct: 587 HDTILCFSSRGKAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVRE 639 >gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803] gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803] Length = 860 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 375/911 (41%), Positives = 543/911 (59%), Gaps = 63/911 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + + + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 2 TDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMR 121 Query: 130 YTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 YTE RL+ + + LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMAT Sbjct: 122 YTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+DG +A+I NP+I LM+II GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 182 NIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSI 241 Query: 249 VIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +RGV+ IE DR+ I+VTE+PYQ NKAA++E+IA+LV +K+I IAD+RDESD Sbjct: 242 TMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESD 301 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+VIELKR A A V+LN LY+ T +QS F N++AL PE T+ L F F Sbjct: 302 RDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEF 361 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R E + RRT+Y L KA +R H+L GL IA+ NLD V+R+IR + + +A+ EL++ Sbjct: 362 RIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVE----- 416 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LSEVQ AIL+++L RLT L D I E + L +I Sbjct: 417 ---------------------GFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKI 455 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R R+ II++EL +K TPRRT IV+ ++ D D I + ++ ++ Sbjct: 456 ADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTE 515 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P S + Q R +G++ ++D+D V H VLFFS G VY + Sbjct: 516 QGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAY 575 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++PI S ARG ++ +L + + E+IT+++ E + ++ Y + TK G +++ LS Sbjct: 576 QIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFD---DDTYFIMLTKQGYIKKTALSA 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 F I +G IA+ L D++ V E+ +++ ++ G + F +R GR + Sbjct: 633 FSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRAL-GRATR 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+ + L GD +ISM I+ + S Sbjct: 692 GVKSMRLRSGDALISMDILPSQVVANI---------------------AVGSEDEPDEDL 730 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G ++ +E ++L V+ KGFGKR FR+ +R+G G++A ++ LV Sbjct: 731 GGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRF--KSKDDQLV 788 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---E 899 A+ VN +D++++V+++G +IR VN+I SR+ GV + D+ + +V + E Sbjct: 789 ALHVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGE 848 Query: 900 SEIVDEAESTE 910 E+ + +ES E Sbjct: 849 EELAEMSESEE 859 >gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae] Length = 822 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] Length = 829 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 366/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ L+++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814 >gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] Length = 880 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 386/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A+I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L++A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V++ RRT I + D++ E+ I +ED+VVT+S+ Sbjct: 486 ELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V + E I + T G + + FA + G+ Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKSGKVVRFNEDKVRAMGRTASGVRGMKLPED 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + T+ DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTSDDENVVGLQRID 839 Score = 67.5 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 59/420 (14%), Positives = 150/420 (35%), Gaps = 26/420 (6%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI--KDLIDLI 434 L++ + + L +A+ + ++ +IR +R+ + + D+ +LI Sbjct: 474 LDEYKALLEEIAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELI 533 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + Y+ + Q + E + G +++E + + D + Sbjct: 534 AQEDVVVTLSNAGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCF 592 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLG 546 S + ++ + T R IV L E E E + + G Sbjct: 593 STRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDG 652 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 VK+ L + R G V +RD+D + + I + + ++ FS G V + ++ Sbjct: 653 TVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKV 710 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 A + + + L + +++ +++ N ++ T++G +R +L+++ Sbjct: 711 RAMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVTQNGYGKRTELAEYP 761 Query: 667 QINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 R+ + + + + + + +++++ T G VR ++ + GRN+ G Sbjct: 762 TKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV-SQVGRNTQG 820 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V I + + V+ + + + + E+ + + Sbjct: 821 VTLIRTSDDENVVGLQRIDEVEEAEVVEGEADVANAEAPVASESSEEQASDASDGEQDTE 880 >gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 858 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 358/896 (39%), Positives = 556/896 (62%), Gaps = 85/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM +G + Y Sbjct: 3 DQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYT Sbjct: 63 KKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K +++DDL KDTVD PN+D + EP V+ + PN+LVNGG GIAVGMATN+P Sbjct: 123 ECRLEKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+DGC A IDN +I+ + LM+ I+ PDFPTG I G G+K+AY TGRG +V+R Sbjct: 183 THNLSEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++++I++TEIPY VNK ++E IA+LV+E ++ I++ DES RQG R+V Sbjct: 243 AKAEIE-SDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A+V+LN+L++ T+LQS FSVN +AL +P TL +K FV R +V +R Sbjct: 302 IDVKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLTLKDCIKYFVEHRHDVTIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA +RAH+L G+ IA N+DEVV+II+ S P AR L QR Sbjct: 362 RTKFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E+Q++AI+++RL+++TGL +++ + + L I IL Sbjct: 411 ---------------FNLDELQSQAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + ++K EL +K++ RRT+I+ + ED + +V+TVSHLGY+KR Sbjct: 456 TDDNLCKKVMKDELNELKEKFGDERRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +R Q RGG G GV R++DF ++ + H ++LFF+ G Y K + +P G+ Sbjct: 516 PLSEFREQARGGVGSKGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + I+ +DE N+ VVFATK+G +++ L + + Sbjct: 576 DSKGRAIQNLLNIDPDDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ + DE++ V +N+I++ K G+ VRF +R GR + GVRG+ L Sbjct: 636 ANGVIAINIAEGDEVVDVRLTNGKNEIIMANKNGRAVRFNEETVRAM-GRTATGVRGMKL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 DQV+ M +V A+A Sbjct: 695 DGDDDQVVGMIVVNDAEA------------------------------------------ 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ VSE G+GKR+S D+R++NR GKG++ ++++ + G +VA+ VN Sbjct: 713 ---------ENVMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITE--KTGRVVAIKNVN 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903 D++ +++++ G IR+ V+E+R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 DDNDLMIINKSGITIRLAVSEVRVMGRATQGVRLINLSKKNDVIASVCKVMSSELE 817 >gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537] Length = 851 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 357/902 (39%), Positives = 548/902 (60%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 ERNDMRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +LI+G GNFGSVDGD PAA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMAT+ Sbjct: 123 YTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATS 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ ++DNPD+ LM + GPDFPTGA+++G++GI+ AY TGRG++ Sbjct: 183 IPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVMGKSGIRRAYETGRGTVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T REQI+VTE+PY VNKA ++E+++ELVR+KRI I +RDESDR+G R Sbjct: 243 VRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A++ KP+ L IL A++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGKPKTLNLKEILVAYLEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S + A+ L++ Sbjct: 363 RRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 413 ----------------SYSLSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ +R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T++ GY+ Sbjct: 457 ILAHSARVDKIIYNELLDIQQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + D+D + + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPTAEFKAQNRGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L+ + E+I T++ D+++ + Y+ F T+ G V+R + DF I Sbjct: 577 YGRHAKGIPVVNLLNFDNDEKIQTLISV-SDQTAASESYLFFVTQLGVVKRTAVKDFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+L+V E +I++ T G V F S +RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI I+ Sbjct: 695 LRDDDIVIGADILNPKAN------------------------------------------ 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++E G+GK+T++ ++ I R GKGI+ +++ N G+LV + V+ Sbjct: 713 -----------VLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKN--GSLVGMTIVD 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L +++G +IR + + RAT GV + K+ +V ++ ++ + E Sbjct: 760 GDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTD 819 Query: 909 TE 910 ++ Sbjct: 820 SQ 821 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 17/258 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E + V+ LG VKR + + R G + + D+D V ++ I + +++ Sbjct: 607 QTAASESYLFFVTQLGVVKRTAVKDFSNIRTNG--LKALTLHDDDEVLNVMITNGEQNII 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G+ + + A G I R+ + V+ Sbjct: 665 IATHDGYSVSFSESDVRVMGRSAAGVRGI---------RLRDDDIVIGADILNPKANVLV 715 Query: 651 ATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 T++G ++ +++ + + ++ + + DI+LTT G + Sbjct: 716 ITENGYGKQTAATEYPIKGRGGKGIKTANITAKNG-SLVGMTIVDGDEDIMLTTNQGVMI 774 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF ++ GR ++GVR I L K +V ++A V D + K + + + Sbjct: 775 RFTADSV-SQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTDSQAKAVDETQSEQA 833 Query: 767 GDTEEITSLKNDSSVEGN 784 + S+ Sbjct: 834 SELLSRAQDDQQSTHSEE 851 >gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] Length = 843 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 345/892 (38%), Positives = 531/892 (59%), Gaps = 85/892 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+ IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 2 PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+ +++N D LME + GPDFPTG +++G++GI+ AY TGRG+I Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+++R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM---------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS Q +AIL++RL RLTGL R+ + +E + I + Sbjct: 412 ----------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGY 547 DIL+ R+ II ELL ++++ RRT ++ G + +++ ++ E+ V+ T++H GY Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S ++ Q RGG+G G+ + ++DF+ L STH +LFF++ G VY+ K + +P Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDF 665 S A+G +IN+L ++ GE I ++ +N Y+ F T G +R +++F Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + I +G A+ L DE+++V +I++ T G + F +R GR++ GVR Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVR 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L + D V+ A++ Sbjct: 695 GIRLRENDYVVGSAVL-------------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ++ ++EKG+GK+T + ++ I R GKGI+ ++++ N G L + Sbjct: 711 ---------APESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V N+ ++L++D+G +IR V+ + R+T GV + T ++ +V ++ + Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 17/264 (6%) Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 + + + D + + G KR P++ + R G + ++D Sbjct: 593 DSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG--LKAINLKD 650 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 D V ++ I H +++ + G+ K + A G I R+ Sbjct: 651 GDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGI---------RLREN 701 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVET 689 V+ T+ G ++ ++ I G +K + E + + T Sbjct: 702 DYVVGSAVLAPESKVMVITEKGYGKQTPAEEYP-IKGRGGKGIKTANITEKNGPLAGLVT 760 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 D++L T G +RF + + GR+++GV I + +V +MAIV D Sbjct: 761 VEGNEDVMLITDRGVMIRFNVDNV-STTGRSTLGVHVIKTDENSKVATMAIVEEEKDDES 819 Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773 E + + S +T+ Sbjct: 820 EDSADTSTATHEAPSASTETQSEE 843 >gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] Length = 843 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 345/892 (38%), Positives = 531/892 (59%), Gaps = 85/892 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+ IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 2 PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+ +++N D LME + GPDFPTG +++G++GI+ AY TGRG+I Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+++R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM---------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS Q +AIL++RL RLTGL R+ + +E + I + Sbjct: 412 ----------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGY 547 DIL+ R+ II ELL ++++ RRT ++ G + +++ ++ E+ V+ T++H GY Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S ++ Q RGG+G G+ + ++DF+ L STH +LFF++ G VY+ K + +P Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDF 665 S A+G +IN+L ++ GE I ++ +N Y+ F T G +R +++F Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + I +G A+ L DE+++V +I++ T G + F +R GR++ GVR Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVR 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L + D V+ A++ Sbjct: 695 GIRLRENDYVVGSAVL-------------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ++ ++EKG+GK+T + ++ I R GKGI+ ++++ N G L + Sbjct: 711 ---------APESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V N+ ++L++D+G +IR V+ + R+T GV + T ++ +V ++ + Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 92/264 (34%), Gaps = 17/264 (6%) Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 + + + D + + G KR P++ + R G + ++D Sbjct: 593 DSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG--LKAINLKD 650 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 D V ++ I H +++ + G+ K + A G I R+ Sbjct: 651 GDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGI---------RLREN 701 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVET 689 V+ T+ G ++ ++ I G +K + E + + T Sbjct: 702 DYVVGSAVLAPESKVMVITEKGYGKQTPAEEYP-IKGRGGKGIKTANITEKNGPLAGLVT 760 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 D++L T G +RF + + GR+++GV I + +V +MAIV D Sbjct: 761 VEGNEDVMLITDRGVMIRFNVDNV-STTGRSTLGVHVIKTDENSKVATMAIVEEEKDDES 819 Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773 E + + +S +T+ Sbjct: 820 EDSADTSTATNEAPSVSTETQSEE 843 >gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415] gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415] Length = 829 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 361/887 (40%), Positives = 547/887 (61%), Gaps = 85/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+D P+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ +LM R Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV DL STH VLFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E + + F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLTDGETIQTIISLNQNEI--DEKSLFFTTRQGLVKRTSISEFTNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V T +++I++ T G VRF +R GR + GV+GI+L Sbjct: 634 NGLRALNLKDGDELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNM-GRGATGVKGITLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 DQV+ +++ Sbjct: 693 DADQVVGASVIR------------------------------------------------ 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++EKG+GKRT + ++ R GKGI+ +++ N G+L + V+ + Sbjct: 705 -----DDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GSLAGLVTVDGH 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + I++++D G +IR V+ I R+T GV + ++ ++V+ I Sbjct: 758 EDIMIMTDTGVIIRTGVSNISQTGRSTMGVKVMRLDENAKIVTFALI 804 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 102/239 (42%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ +Q + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRGSQTD---AEAQAQLMSRFDLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ + ++ D + ++ + + + + + G + Sbjct: 433 ERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +D ++ +++G + R+ EI R KG V + E + ++ + ++EI + Sbjct: 550 THDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLKLTDGETIQTIISLNQNEIDE 608 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 89/255 (34%), Gaps = 17/255 (6%) Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 + T + + E + + G VKR +S + R+ G + ++D D Sbjct: 588 KLTDGETIQTIISLNQNEIDEKSLFFTTRQGLVKRTSISEFTNIRQNG--LRALNLKDGD 645 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635 + ++ + + ++ + G+ + K + A G I + +Q Sbjct: 646 ELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNMGRGATGVKGITLRDADQ--------- 696 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCT 691 ++ V+ T+ G +R S++ + + V Sbjct: 697 VVGASVIRDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGSLAGLVTV-D 755 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 DI++ T G +R +S I GR+++GV+ + L + ++++ A++ +E Sbjct: 756 GHEDIMIMTDTGVIIRTGVSNI-SQTGRSTMGVKVMRLDENAKIVTFALIEPEPEADEEA 814 Query: 752 ICYMKHMSAQRRLIS 766 + + Sbjct: 815 EANEEEKGQGVNEEN 829 >gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 848 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 351/897 (39%), Positives = 538/897 (59%), Gaps = 84/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGM TN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNL EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG++ Sbjct: 183 IPTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ +EQIVVTE+PY VNKA ++E+I+EL R+K+I I +RDESDR+G R Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R ASA VILN LY+ T LQ+ FS NM+A++ P+ +L IL A++A + EV+ Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I E L I + D Sbjct: 412 ---------------NGYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T+++ GY+ Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L+ E+I T++ + N+ Y+ F T+ G V+R + +F I Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVRGEAGESND-YLFFVTRLGVVKRTAVKEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ +I++ T G V F + +RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ ++ Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 K+ +L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + I++ + +G +IR V+ + RAT GV + + +V ++ ++ E++++ Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816 >gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4] gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4] Length = 843 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 356/917 (38%), Positives = 522/917 (56%), Gaps = 92/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D + I V I EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + L A+ME I+GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + EV+VRRT+YLL KA++RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+ KRT D+ + R GKG+ Sbjct: 723 -------------------------FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K + G LV V+D+D++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 K--KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIVDEAESTE 910 + R + AE+T+ Sbjct: 816 IARNADEPEELAAETTD 832 >gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] Length = 825 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 361/890 (40%), Positives = 538/890 (60%), Gaps = 85/890 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ +++NP++ + LME++ GPDFPTG +++G++GI+ AY TG+GSI + Sbjct: 183 PPHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+ Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+++R SA VILN LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ NKA RAH+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMER---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AIL++RL RLTGL RD I NE SL I + DI Sbjct: 413 ----------------FSLSDRQAQAILDMRLRRLTGLERDKIENEYQSLLELIADLKDI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549 L++ R+L II+ EL + RRT ++ +L +EDED I E++V+T+++ GY+K Sbjct: 457 LANPQRVLEIIQTELQELGQRFGDERRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RV S +RAQRRGG+G G+ + DEDFV L STH ++LFF+++G VYK K + +P Sbjct: 517 RVANSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEY 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L ++ ERI I+ Y+ F T+ G V+R ++ F I Sbjct: 577 GRAAKGIPVINLLGIDSNERIEAIIS--ASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ L DE+++V ++ +++ T G V F +R GR + GVRGI L Sbjct: 635 ANGLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFKEELVRDM-GRTAAGVRGIRL 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ +++ Sbjct: 694 REDDYVVGASVIK----------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ +L ++E G+GKRT ++ I R GKGI+ +++ N G L + V+ Sbjct: 707 ------EDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSG 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + I+L++DKG +IR V + RAT GV + +VV++ + Sbjct: 759 KEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTMATVDP 808 >gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 367/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSI +R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + +++++D G +IR + I RAT GV + +D ++V+ + +E + Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811 Score = 94.1 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S +G+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] Length = 852 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 386/907 (42%), Positives = 534/907 (58%), Gaps = 72/907 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+AA+YD + RMAQ +++R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVDF NYDGS QEP VL R PN LVNGG GIAVGMATN+P H Sbjct: 126 RMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+A+ID+ + +D LM + GPD PT A+I G GI+ AY TGRG +VIR Sbjct: 186 NLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAIINGVAGIREAYRTGRGRMVIRAR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 E+ + ++VTE+PYQVNKA +LEKIA LV+EKRI I +LRDESD+ G RVVI Sbjct: 246 CEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN LY++T L+S+ +NMVAL +P+ +L +L AF+ R EVV RR Sbjct: 306 ELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQPKLHSLRDVLDAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD-IKDLI 431 T Y L KAR+R HVL GLA+A+AN+DEV+ +I+ SP P A+ L+ RSW I +++ Sbjct: 366 TVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGITEML 425 Query: 432 DLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSE Q +AIL+LRL RLTGL ++ I E L Sbjct: 426 QRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRDLLGS 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL S RL+ +I++ELL++K+ PRRT I +D+ ED I ED+VVT+S Sbjct: 486 INELLAILGSGDRLMAVIREELLAIKEHYADPRRTEITANRVDLTLEDLIQPEDVVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL Y+AQ RGGKG++ M+DEDF+ LF+ +TH ++L FSS G Y KV Sbjct: 546 HGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLCFSSHGKCYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP GS +RGK ++N+L L+ ERI+ ++ ++ Sbjct: 606 YELPHGSRGSRGKPIVNLLPLDPAERISAVVS---------------------IKEFDDQ 644 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSV 722 F + + T+ G + P+S R S Sbjct: 645 HF------------------------------VFMATRKGTVKKTPLSDFSRPR----SS 670 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 G+ ++L + D ++++ I E + A R + ++ Sbjct: 671 GIIAVNLQEDDWLVNVGITD----GEREIMLLTDAGKAIRFPEDAVRPMGRTAGGVRGIQ 726 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + Q L L E ILT +E G+GKRT ++ +R G+G+ + S+ N G +V Sbjct: 727 LGTGQSVIQLLILGEGDILTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERN--GNVV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V + D+I+L+++ GTL+R+PV EI I SR T+GV + + +ER+ V RI Sbjct: 785 GAAQVTEEDEIMLITNAGTLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVARIEPLND 844 Query: 903 VDEAEST 909 E E Sbjct: 845 TVEDEDA 851 >gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 842 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 369/910 (40%), Positives = 539/910 (59%), Gaps = 79/910 (8%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD E I S + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 2 SDNESTARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVD DPPAA Sbjct: 62 DRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAA 121 Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTECRL A LL D+ +TVDF NYDGS QEP+VL AR P +L+NG GIAVGM Sbjct: 122 MRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E+VDG +A+I NP++ LM+ I PDFPTGA+I+G+ GI+ AY TGR Sbjct: 182 ATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRS 241 Query: 247 SIVIRGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 SI +RGV+ +E R+ I++TE+PYQ NKAAM+EKIAELV EK++ IAD+RDE Sbjct: 242 SITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G RVVIELKR A V+LN LY+ T LQ+ F VNM+A+ +P TL L+AF+ Sbjct: 302 SDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FREEV+ RRT+Y L KA +R H+L G +A+ LD V+ +IR + + TAR EL Sbjct: 362 DFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL----- 416 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + LSE Q IL+++L RLT L + I+ E L Sbjct: 417 ---------------------QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVR 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + DIL+ R R++ II +EL +K +PRR+R+ ++ +D I + V+ + Sbjct: 456 QIADLRDILARRERVMQIISEELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFL 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+KR+ L ++ Q R +G++G ++++D + F +H ++LFF++ G VY Sbjct: 516 TEQGYIKRMGLEEFQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLP 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++P GS ARG A++ +L + + ER+T+++P + ++ Y+V T+ G +++ L Sbjct: 576 AHQIPQGSRAARGSAIVQLLPITREERVTSMVPVSQFS---DDEYLVMLTRGGYIKKTAL 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 S F + +G IA+ L+ DE+ V +D+++ T+ G +RFP +R GR Sbjct: 633 SAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPL-GRA 691 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVR I+L GD ++SM I+ ER Sbjct: 692 TRGVRAITLNAGDDIVSMDIISAESVMAAER----------------------------- 722 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + KL ++L ++++G GKR++ +FR NR GKG+ AT Sbjct: 723 ----------EGEKLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKF--RQASDE 770 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L A+ VN D+I+LV+ +G ++R I SR GV++ ++ +V V + + Sbjct: 771 LAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPAA 830 Query: 901 EIVDEAESTE 910 + +E E++E Sbjct: 831 LVAEE-ETSE 839 >gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] Length = 822 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 367/901 (40%), Positives = 555/901 (61%), Gaps = 90/901 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + ++ I I +EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MAKK--EEIQDIHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ + ++K Y K ARI G+ MGKYHPHG+++IYDA+ R+AQD+S R L++G GNFGS+ Sbjct: 59 SELNLSYDKPYRKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSI 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++ K +L D+ K+TVD+ PN+D + +EPVVL +R+PN+LVNG Sbjct: 119 DGDSQAAMRYTEAKMTKMTGEMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSN 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD +A+I+NP+I+++ L++ ++GPDFPTG +I+G+TGI NA Sbjct: 179 GIAVGMATNIPPHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R +HIE+ S R++IVVTEIPY VNKA M+EKIA+LVR+K++V I+D+R Sbjct: 239 YTTGRGRIKLRSKTHIEEISKKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RV I+L++ +A +ILNQLY+YT LQ FSV +AL +P+ L IL Sbjct: 299 DESDRNGIRVAIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVH 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +++++VRRT+Y L KA+ RAH++ GL IA+ N+DE+++IIR S N A +LM+R Sbjct: 359 YLNHQKDIIVRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIRASYN--DAEEKLMER 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSEVQ +AI+++RL RL GL R+ + NE L Sbjct: 417 --------------------------FDLSEVQAKAIVDMRLRRLQGLEREKLENEYAEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ +L+S ++ IIK+EL +KD+ RRT D + ED I ED+VV Sbjct: 451 LKTIEYLESVLASDELVMSIIKEELSEIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVV 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H+GYVKR+P S Y+ Q+RGGKG + + R+ DFV LF +TH ++FF++ G VY+ Sbjct: 511 TITHVGYVKRLPASTYKTQKRGGKGVTALSTRENDFVKHLFFTTTHHYIMFFTNKGKVYR 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S A+G A++N+L+L+ GE+IT ++P E + ++ Y+V AT++G ++ Sbjct: 571 LKGYEIPDASRIAKGTAIVNLLALDPGEKITAVIPIKEFK---DDEYLVMATRNGVFKKT 627 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+++ ++G +A+ L DE++ V +I+L T G ++F + +R GR Sbjct: 628 SLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAI-GRV 686 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GV+GISL D +I M I Sbjct: 687 SKGVKGISLKDDDYLIGMDIATD------------------------------------- 709 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++L+V+EKG+GK T + + R+GKG+ ++K + GA Sbjct: 710 ----------------NAYVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTK--KTGA 751 Query: 841 LVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + + + D I+++S GT+IR+ + I R+T GV + + +D + ++ ++ Sbjct: 752 LSGMCVIEKEKDDIMVISIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKVPS 811 Query: 900 S 900 Sbjct: 812 Q 812 Score = 95.6 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 106/260 (40%), Gaps = 26/260 (10%) Query: 657 VRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 VRR + + I + LD+ DEI+ + + + + RF +S Sbjct: 368 VRRTEYD-LKKAKARAHIVEGLLIALDNIDEIIKIIRASYND-----AEEKLMERFDLSE 421 Query: 713 IRV-----FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ R G+ L + + A +L + + + + + + Sbjct: 422 VQAKAIVDMRLRRLQGLEREKL-ENEY----AELLKTIEYLESVLASDELVMSIIKEELS 476 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + ++ + ++ E + + ++L +E ++T++ G+ KR + ++ R GKG+ Sbjct: 477 EIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGV 536 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884 A + + + L F + I+ ++KG + R+ EI ASR KG V + + Sbjct: 537 TALSTRENDFVKHL---FFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLA 593 Query: 885 TAKDERVVSVERIRESEIVD 904 E++ +V I+E + + Sbjct: 594 LDPGEKITAVIPIKEFKDDE 613 >gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031] gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031] gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104] Length = 822 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 367/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSI +R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + +++++D G +IR + I RAT GV + +D ++V+ + +E + Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D++ S +L AD + + + +S + + + S K + + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSL 492 Query: 790 CQELKLKEQFIL-TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E ++E +L T+S +G+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] Length = 949 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 382/900 (42%), Positives = 550/900 (61%), Gaps = 93/900 (10%) Query: 6 ISSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 +SD+ E+KGI + I +EM+ SY+ YA++VI+GRA+PD RDG KPVHRR+LF Sbjct: 56 PASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLF 115 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G+ +K Y K AR+ G+V+GKYHPHG+ A+YD + RM QD+SLR LI+GQGNFG Sbjct: 116 AMKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFG 175 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA RYTE R+ + A +L D+ K+TV F PNYDGS +EP VL A+ PN+LVNG Sbjct: 176 SIDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNG 235 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATN+ HN+GEV+DG + +I+NPDI + LM +I+GPDFPTGA ILG GIK Sbjct: 236 STGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGTAGIK 295 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY TGRG++ IR V+ I++ DR++I+VTE+PYQVNKA M+E IA+LVREK I+ I+D Sbjct: 296 SAYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISD 355 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR+G RVVIEL RG + V+LNQLY++T +++ F V +AL KP+ L +L Sbjct: 356 LRDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGKPKELNLKELL 415 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + ++ +R E++ +RT Y L K+ +RAH+L GL IA+ N+DEVV +I+ S N + A++ LM Sbjct: 416 EIYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLM 475 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + L E+Q++AIL++RL RLTGL + EL Sbjct: 476 E--------------------------NFALDEIQSKAILDMRLQRLTGLETKKVLEELE 509 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I E I+ S II+ ELL +K++ RRT+I++ ++ +ED I E++ Sbjct: 510 GLVKLIGELNKIIESDELKYEIIRNELLELKEKYGDARRTKIMQAASEVREEDLIHEEEV 569 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+++ GY+KR+PL Y Q RGG+G G+ M++EDFV +LFI STH +LFF++LG + Sbjct: 570 VVTITNGGYIKRIPLKTYTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRL 629 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y EKV+ +P GS Q+RGKA++N+L L GE I ++P E + N Y++ AT+ G ++ Sbjct: 630 YWEKVYEIPEGSRQSRGKAIVNLLELKGGETINAMIPVKEFD---KNHYLLMATREGTIK 686 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F ++G IA+ LD DE++ V + ++L+ +K G+ +RF +R G Sbjct: 687 KTPLSEFKNPRKAGIIAVTLDEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPM-G 745 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRG++L D+V+S+ IV Sbjct: 746 RTARGVRGMALDGPEDEVVSLDIVDETTTLLTVTE------------------------- 780 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 GFGKRT + R GKG+ ++ N Sbjct: 781 ----------------------------NGFGKRTEYSQYPAHRRGGKGVITIITNERN- 811 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G + V V D+D++I S G +IR+P +I I R T+GV I + ++V + RI Sbjct: 812 -GPVSRVRSVADDDELIFTSADGIIIRIPAKDISIQGRNTQGVRIINLKSGDKVAGIARI 870 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 14/249 (5%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +K+ PLS ++ R+ G + ++D + + + VL S G + Sbjct: 680 TREGTIKKTPLSEFKNPRKAGIIAVTLD--EDDELVRVLLTDGKKEVLIVSKKGKAIRFS 737 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + ARG + ++L+ E + ++ ++ + ++G +R + Sbjct: 738 EKDVRPMGRTARG---VRGMALDGPEDEVVSLDIVDETTTLLTVT-----ENGFGKRTEY 789 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAGR 719 S + R GK + + + + V +++++ T+ G +R P I GR Sbjct: 790 SQYPAHRRGGKGVITIITNERNGPVSRVRSVADDDELIFTSADGIIIRIPAKDI-SIQGR 848 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GVR I+L GD+V +A + + A+ + ++ K A +G+ E+ + + Sbjct: 849 NTQGVRIINLKSGDKVAGIARIQNGKAEKNLKLTAFKGKEATEATGAGEEAEVPEGEAED 908 Query: 780 SVEGNISEE 788 E + E+ Sbjct: 909 LNEFDEVED 917 >gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] Length = 822 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5] Length = 851 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 332/895 (37%), Positives = 534/895 (59%), Gaps = 83/895 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVK 73 I ++I ++M+++Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M ++ + +K K Sbjct: 14 RIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRK 73 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GK+HPHG+ ++YDA+ R+AQDWS+R L++GQGNFGS+DGD PAA RYTE Sbjct: 74 SARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEA 133 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K ++ D+ K+TVD+ N+D + EP VL + P ++VNG GIAVGMATN+ H Sbjct: 134 RMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPH 193 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C A IDNP+I + +++ I+GPDFPTG +I G G++ A TGRG +++R Sbjct: 194 NLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIYGYEGVREAMLTGRGRVMMRAK 253 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE T RE IV+TEIPY +NKA M++KIA+++ EK+I I+ + DESDR G R++I Sbjct: 254 TDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIIII 313 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK A A V+LN L++ T LQ+ F+VN +AL +P+ + ++K FV R +VVVRR Sbjct: 314 LKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNGRPQMLPMRDLVKHFVDHRHDVVVRRA 373 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA +R H++ GL IA N+DE+V IIR S P+ A++ +++R Sbjct: 374 RFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIER------------- 420 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS++Q AI+E+RL LTGL + E + L +I ++L + Sbjct: 421 -------------FNLSDIQASAIIEMRLRALTGLEYGKLIAERDELTKQIAYLKEVLEN 467 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + IIK ELL +K++ RR+ IV + ED +DMV+T+SH+GY+KR PL Sbjct: 468 VGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPL 527 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + YR Q RGG G G RDEDF+ +++ S H ++LFF+ G + KV+ +P G+ + Sbjct: 528 AEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSS 587 Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G+A+ N++ + +++ + DE NN +++ TK G +++ KL + + ++ Sbjct: 588 KGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQN 647 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ + D+++ + + + ++++ + G+ +RF S +R GR GVRGIS+ + Sbjct: 648 GVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVRPI-GRVGAGVRGISIEE 706 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M V Sbjct: 707 SDEVVGMICVEP------------------------------------------------ 718 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +Q +L +SE G+GKRT ++RI+NR GKG++ +V++ + G L+++ V D++ Sbjct: 719 ---DSKQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTE--KTGKLISIQAVTDDN 773 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +++++ G IR V++IR+A RAT+GV I + + + + SV + + DE Sbjct: 774 DLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREGDAIASVMAVPAAGDEDEE 828 >gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2] gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2] Length = 837 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 377/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL M ++G+ +K + Sbjct: 4 NKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A ++ D+ KDTVDF PNYD EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 124 EARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E +D A++DNP+I + LM I+GPDFPTG +ILGR GI+ A+ TGRGSI++ Sbjct: 184 PHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMV 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+E + +IVVTEIPYQVNKA ++ KIA+LVREK+I I L DES+R+G R+ Sbjct: 244 RSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ A DVILNQLYR T LQ+ F VNM+AL P++ + L+ +V + +V V Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTV 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N AR LM++ Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQ---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q AILE+RL RLTGL RD I NE L I + DI Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R+LGII+ EL VK+ RRT I E DM+DED I ED+V+T++ GY+KR Sbjct: 458 LANHDRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P Sbjct: 518 MPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSG 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L+L++ E++ ++P D + +++F TK+G V+R +S+F I + Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVRPDS---ESSFLLFVTKNGLVKRTPMSEFDSIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ Sbjct: 635 NGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV- 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G V+ A Sbjct: 693 DGSIVVGAA--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L VSE G+GKRT+ ++R++ R KG++ +V+ N+ G LV+V VN + Sbjct: 702 --TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++V++ G +IR+ V++I I SR T+GV + + A +E V V + Sbjct: 758 EDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESVAKVAIV 804 >gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121] gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121] Length = 843 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 357/917 (38%), Positives = 522/917 (56%), Gaps = 92/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D + I V I EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + L A+ME I+GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + EV+VRRT+YLL KA++RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+ KRT D+ + R GKG+ Sbjct: 723 -------------------------FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K + G LV V+D+D++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 K--KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIVDEAESTE 910 + R + AE+T+ Sbjct: 816 IARNADEPEELAAETTD 832 >gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] Length = 910 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 359/928 (38%), Positives = 549/928 (59%), Gaps = 80/928 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ Sbjct: 2 EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R L +GQGNFGSVDGD AA R Sbjct: 62 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG GIAVGMAT Sbjct: 122 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D VA ID+PDI++D LM+ + PDFPTG +I G G+ AY TGRG +V Sbjct: 182 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R H E+ R+ +VVTE+PYQVNK+ +E+IA+ VR++RI IADLRDESDR G R Sbjct: 242 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+GA+A+++ NQ+Y+++ LQ F VNMVAL G +P+ TL ++ +V R E+V Sbjct: 302 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+ TAR+ L + + D Sbjct: 362 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 421 Query: 430 LIDLIDDSSYTIGS-----------------------DGTMYLSEVQTRAILELRLARLT 466 + I+ G D +L+E Q AIL LRL+RLT Sbjct: 422 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 481 Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-L 525 GL R+ I E + +I+E IL+SR R + +IK+ELL+VK+ D RRT I Sbjct: 482 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 541 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D+ ED I R+ +VVT+++ G KR P+ YR Q RGG G G R++DF+ L++ + Sbjct: 542 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 601 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDES 641 H +L F+ G + + + +P G A+G+++ ++ ++ +R+ ++ EDE+ Sbjct: 602 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 661 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 N+ YV+ AT+ G V++ L + + +G I +K+D D+++ +N +++ + Sbjct: 662 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 721 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G+ V F R GRN+ GVRG+ L +++ M V A D Sbjct: 722 GGRAVHFDEGDARPM-GRNTRGVRGMELPGDQELVGMISVPPAMHD-------------- 766 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + +L ++E G+GKRT+ D+R+ Sbjct: 767 -----------------------------------DLDVLAIAEHGYGKRTALSDYRVQG 791 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R GKG+ + + GALV++ V ++ ++++++ G +IR V EI R T+GV Sbjct: 792 RGGKGLITLNRTDR--TGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQ 849 Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909 + + + V R+ +++ + + T Sbjct: 850 VIDLKDGDAIADVTRVADTDEPEADDGT 877 Score = 77.9 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 11/275 (4%) Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 R ++ + +++ + V+ + G VK+ L Y R G + Sbjct: 642 PDDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEG 701 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 D+ L + + + +S G + + P R + + L + + Sbjct: 702 DQLIEASL---TGGDNTVVVASSGG--RAVHFDEGDARPMGRNTRGVRGMELPGDQELVG 756 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVET 689 ++ P + ++L V+ +HG +R LSD+ R GK + L+ D +S++ Sbjct: 757 MISVP--PAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKG 814 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + D+++ T+ G +R + I GRN+ GV+ I L GD + + V D Sbjct: 815 VLGDEDLMVITEGGIMIRTRVGEISTM-GRNTQGVQVIDLKDGDAIADVTRVADTDEPEA 873 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + + E +D+ + + Sbjct: 874 DDGTADDEAPDADAAAAANGEMDDDAASDAVEDTS 908 >gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8] gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus] gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8] Length = 805 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 378/887 (42%), Positives = 534/887 (60%), Gaps = 86/887 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I GEVMGKYHPHG+AAIYDAL RMAQ W+LR LI+GQGNFGS+DGDPPAA+RYTE R Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +L D+ KDTVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HN Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD VA+I+NP I L+ +M + GPDFPTG + + GIK AYATGRGS+ +R Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKLS-KKGIKEAYATGRGSLKVRAKV 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ G R +VVTEIPYQVNKA+++ +IA LV+ K+I DI LRDESDRQG R+ IEL Sbjct: 242 RVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRGA+ V+LNQLY++T+LQ+ F+VN++A+ +P+ +L+ +++ ++ R+EVV RR+ Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSL 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA +RAHVL GL IA+ ++DEV+ +IR S + AR LM+R Sbjct: 361 FELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +RLL +K +LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 455 ARLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLE 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ RGGKG ++ED T +F+ H +L F++ G VY+ KV+ LP QAR Sbjct: 515 SYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + ++L L + E + ++ + Y+VFAT+ G V+R L ++ + ++G I Sbjct: 575 GVHVKSLLPLAEDEEVAALLSVRGLD---QEGYLVFATERGLVKRTALKEYQNLGQAGLI 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 A++L D ++ V E++ +L T+ GQ +RFP+ +R GR++ GV G+ K D Sbjct: 632 AIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPED 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ +V + Sbjct: 691 RVVSLVVVKPGEMVD--------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L+VS +G+GKRT ++ + R G G+ VS ++G L A+ V + + Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDL 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++S +G IR PV EIR SRAT GV + + +D+ V S + E Sbjct: 758 LVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%) Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + + + + L S + + E + +L + Sbjct: 494 EDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFT 553 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV----------------- 847 +G R Y+ R +G+ + + E + A+ V Sbjct: 554 NRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGYLVFATERGL 613 Query: 848 ----------------------------------NDNDQIILVSDKGTLIRVPVNEIRIA 873 + D+ IL + +G IR P+ E+R Sbjct: 614 VKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRAT 673 Query: 874 SRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 R T+GV+ K ++RVVS+ ++ E+VD Sbjct: 674 GRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705 >gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] Length = 828 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 554/900 (61%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + D L Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909 + I+++++KG +IR V I RAT GV I D ++V+ + E +DE + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIDEINTD 817 >gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS] gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes] gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS] gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] Length = 828 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I+++++KG +IR V I RAT GV I D ++V+ ++ + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RI++++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] Length = 871 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 340/894 (38%), Positives = 540/894 (60%), Gaps = 85/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +G+ + K Sbjct: 5 EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K + ++ D+ K+TVDF+ N+D + EP V+ + P +L+NG GIAVGMATN+P H Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++G +A ++N DI++D LM+ I+ PDFPTG +I G G++ A+ TGRG IV+R Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMRAK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E+ RE I+V+EIPYQVNKA M+++ A+LV EK+I I+++RDESDR G R+V Sbjct: 245 VGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVYI 303 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A+ +V+LN LY+YT LQS FSVN +AL +P+ L ++ FV R +VVVRRT Sbjct: 304 LKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIHYFVEHRHDVVVRRT 363 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 K+ L KA +RAH+L GL IA N+DEV+ +IR S N + A+ +L++R Sbjct: 364 KFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIER------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS++Q+RAI+E+RL +LTGL +D +R E L I+ +L+ Sbjct: 411 -------------FKLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLAD 457 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + +IK+EL ++ + RR++I D+ ED I E++V+T+SH GY+KR L Sbjct: 458 VNLRTALIKEELEDMRAKYGDERRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNL 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y+ Q RGG G+ RD DF+ +++ + H ++FF+ G Y +V+ +P GS A Sbjct: 518 NEYKTQNRGGVGQKSAGTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTA 577 Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G+AL N++++ +++ + + D+ + ++ TK G V++ L + + + Sbjct: 578 KGRALQNLINIESDDKVKAFICTQDLKDKDYTTSHNLIMVTKKGMVKKTSLDKYSKPRVN 637 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ + DE+LS + + I++ K G+ +RF + R GR + GVRGI L Sbjct: 638 GVAAITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPM-GRTASGVRGIRLKD 696 Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI + V +++ Sbjct: 697 ESDEVIGLVSVNDMNSE------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E G+GKR+S ++RI+NR GKG++ ++++ + G L+++ V D Sbjct: 714 ---------ILVVAENGYGKRSSLDEYRITNRGGKGVKTLNITE--KTGQLISINTVTDA 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ + ++ + Sbjct: 763 DDLMIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIAAVTKVMKDDVEE 816 >gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] Length = 829 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 364/897 (40%), Positives = 546/897 (60%), Gaps = 86/897 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +I++R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMSADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +I++ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I+ Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814 >gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase [Candidatus Kuenenia stuttgartiensis] Length = 838 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 539/902 (59%), Gaps = 88/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ I + I +EM++SYL+YA++VI+ RA+PD RDGLKP RRIL M + + Sbjct: 2 TERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRA 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K+ KCA+I+G+ G YHPHG +Y L RMAQD++ R LI+GQGNFGS+DGDPPAA R Sbjct: 62 KFRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ +++DL K TVD+ PNYD + EPVVL +++PN+L NG GIAVGMAT+ Sbjct: 122 YTEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATS 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN E+ DG VIDNP++ ++ LM +I GPDFPTGA I G +GIK Y TGRG+I+ Sbjct: 182 IPPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGTSGIKEGYKTGRGTII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +H+E + R+ IVVTEIPYQ+N+ +LE+IA LVRE+ + I+D+R+ESDR G R Sbjct: 242 VRAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+LK+G +V+LNQLY++T LQ FS+ M+AL +PE L +L ++ R+ V+ Sbjct: 302 LVIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNRPETLNLKQMLICYIEHRKVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 V+RT++LL KA++RAHVL GL IA+ N+D V+ +I+ S + ARR L+ Sbjct: 362 VKRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLIS---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE+Q AIL++RL RLTGL + I E L +IKE Sbjct: 412 ----------------TFSLSEIQANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQS 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L IIK+++ +K++ RRT IV + D+E ED I E++ V +SH GY+K Sbjct: 456 ILANEKLVLDIIKKDVAEIKEQFGDKRRTEIVGAVGDLEREDLITEENVTVIISHEGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PLS YR Q+RGGKG G M++ DF LF+ STH +LFF+ G VY KV+ +P Sbjct: 516 RLPLSAYRKQQRGGKGVIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQM 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+ALIN+L L +GE +T+ +P ++ +V AT HG +++ L + Sbjct: 576 GKITKGRALINLLELKEGENVTSFIPVRNF----DDRQLVMATSHGIIKKTVLKAYGNPK 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ LD D ++ V+ + D++L T+ G+ VRF +R GR S GV+GI L Sbjct: 632 KGGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRFSEEDVRSV-GRVSRGVKGIKL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD+V M +V Sbjct: 691 KNGDKVCGMVVVDD---------------------------------------------- 704 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++T+ E GFGKRT+ ++ NR G+G+ ++ N G +V + V + Sbjct: 705 -------ESSLMTICENGFGKRTNFEEYSAKNRGGQGVINIKTTERN--GKVVGLLDVRE 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEAE 907 D++I+++ G +IR PVN IRI R T+GV +F K ++++SV R+ E D+ E Sbjct: 756 TDELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVARVIPEENPATDDLE 815 Query: 908 ST 909 + Sbjct: 816 TE 817 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 92/220 (41%), Gaps = 15/220 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +K+ L Y ++GG + D L + ++ + G + Sbjct: 614 TSHGIIKKTVLKAYGNPKKGGIIAINLDEGDTLIGVKL--TNGKQDLILGTEQGKAVRFS 671 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +RG + + L G+++ ++ + ++ ++G +R Sbjct: 672 EEDVRSVGRVSRG---VKGIKLKNGDKVCGMVVVD------DESSLMTICENGFGKRTNF 722 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ NR G+ + + + + V + +++++ TK G+ +R P++ IR+ GR Sbjct: 723 EEYSAKNRGGQGVINIKTTERNGKVVGLLDVRETDELIMITKGGKIIRTPVNTIRII-GR 781 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 N+ GV+ + K D++IS+A V+ + + + + Sbjct: 782 NTQGVKLFDIGKADKLISVARVIPEENPATDDLETENDIP 821 >gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV + + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] Length = 899 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 372/905 (41%), Positives = 547/905 (60%), Gaps = 91/905 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 DENIFDKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP+VL ARYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HN+ E++ V +IDN + ++ L+EI++GPDFPTGA+ILG GI+ AY TG Sbjct: 182 NIPPHNMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTRGIEEAYRTG 241 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RG I +R V++IE + + +I+VTE+PY VNKA ++EKIAELVR+K+I I +LRDESD Sbjct: 242 RGKIRVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESD 301 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G R+ IEL+R +A+VILNQLY++T LQ F V M+AL +P+ TL+ +L ++ Sbjct: 302 REGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQPKVLTLLEMLSYYLKH 361 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 +EEVV RR Y LNKA++RAH+L GL A+ +DEV+ IIR S N A+ L++R Sbjct: 362 QEEVVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIER---- 417 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++Q +AI+++RL LTGL R+ +++E L I Sbjct: 418 ----------------------FEFDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRI 455 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E IL+ LLG+IK E+ + D+ RRT I D+ ED I E+ V+ ++ Sbjct: 456 AEFEAILADEKLLLGVIKGEIQVINDKFGDERRTSIGFDEFDISMEDLIPDENTVIAMTR 515 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 LGY+KR+ + +++Q RGGKG G+ DEDF+ DLF+ +TH ++FF++ G VY+ K + Sbjct: 516 LGYIKRMTIDNFKSQHRGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAY 575 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S ARG A++N+L L ERIT I+ E + +N Y+ ATK G V++ K+ + Sbjct: 576 EIPESSRTARGTAIVNLLQLLPEERITAIIALKEYK---DNRYLFMATKDGIVKKTKIKE 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I ++G A+ L DE++ V+T + DI+L TK G C+RF +R GR S+GV Sbjct: 633 YQNIRKTGLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVRN-TGRASMGV 691 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G++L GD+V++M I Sbjct: 692 IGMNLTNGDEVVAMQI-------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +++LTVSE G GK T +F R GKG++ +++ + G +V Sbjct: 708 ---------HTQGKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITE--KTGNVVGA 756 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902 VN+ ++++++++G +IR+ VN I I R T GV + + KD RV S+ +++ES + Sbjct: 757 KAVNEEHEVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLAKVKESSM 816 Query: 903 VDEAE 907 E + Sbjct: 817 NSEED 821 >gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 368/894 (41%), Positives = 551/894 (61%), Gaps = 85/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + +++++D G +IR + I RAT GV + +D ++V+ + +E + Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811 Score = 93.3 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTV-INVESDRSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511] gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511] Length = 843 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 381/890 (42%), Positives = 549/890 (61%), Gaps = 87/890 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E +G+ V I + +Q SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 6 ENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAA 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGS+DGD AA RY Sbjct: 66 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A LL D+ KDTVDF PNYD S +EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H L E++D + ++NP+ +++ LM++++GPDFPTG VI G+ GI +AY+TGRG I + Sbjct: 186 PPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGRGRIKV 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIE+ +RE IV+ E+PYQVNK+ ++E IA+LVR+K+I I+++RDESDR+G RV Sbjct: 246 RAKTHIEQHK-NREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A +D++LN L++ T +Q+ F + M+A+ +P+ FTL +L F+ R+ V++ Sbjct: 305 VIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHRKTVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL IAV N+DEV++IIR S + AR LM R Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSR---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAILE+RL RLTGL + I +EL L I+ I Sbjct: 415 ----------------FDLSEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + + IIK+ELL VK+ RRT IV+ D++ ED I E MVVT++H GY+KR Sbjct: 459 LKSETMIEEIIKKELLEVKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP+ Y QRRGGKG++ V ++DF+ FI +TH +++F + G +Y KV+R+P GS Sbjct: 519 VPVKQYEKQRRGGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGS 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L++ E+I I+P + + +VF T++G V+R LS++ I Sbjct: 579 RTAKGKAVVNLINLDKDEKIKAIIPTQDFN---EDKSLVFFTRNGIVKRTNLSEYSNIRS 635 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD DE++ + + + + TK G C+RFP+S +R GR + GV I Sbjct: 636 VGVRAINLDENDELIDAKIIKPDTKWLFVVTKKGMCIRFPVSDVREI-GRVARGVTAIKF 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD V + + + + Sbjct: 695 KIDGDYVCGATTIENEEDE----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG GKRT + ++R +R+GKG+ A ++ + G +V V V Sbjct: 714 -----------ILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTP--KTGDVVGVVFVE 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ ++ ++ G +IRV + IR A RAT GV I + +RVVS+ + Sbjct: 761 EDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVSIAKCP 810 >gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17] gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17] Length = 881 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 374/902 (41%), Positives = 547/902 (60%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y Sbjct: 8 DHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 68 KKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+P Sbjct: 128 ECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNLGEV+DGC A IDNP+IDL+ LM I+ PDFPTGA I G G+K+AY TGRG +V+R Sbjct: 188 THNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA ++E IAELV+E +I I++ DES RQG R+V Sbjct: 248 AKAEIESDES-HDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGMRIV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +R Sbjct: 307 IDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 367 RTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E+Q++AI+++RL++LTGL D + E L I IL Sbjct: 416 ---------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K EL VK++ PRRT I + ED + +V+TVSH+GY+KR Sbjct: 461 NDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRT 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G Sbjct: 521 PLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDR 580 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L++ +++ + +DE N+ YVVFATK+G V++ L + + Sbjct: 581 NSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ + DE++ V N++++ + G+ VRF S IR GR S GVRG+ L Sbjct: 641 ANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRL 699 Query: 730 AKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 +GD V+ M +V ++ Sbjct: 700 DEGDDAVVGMIVVNDSET------------------------------------------ 717 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ VSE G+GKR+ D+RI+NR GKG++ V++ + G LVA+ V Sbjct: 718 ---------ENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTE--KTGRLVAIKNVT 766 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907 D++ +++++ G +IR+ V + R+ RAT+GV + + K++ + SV ++ SE+ E Sbjct: 767 DDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826 Query: 908 ST 909 Sbjct: 827 EE 828 >gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1] gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1] gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] Length = 828 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I+++++KG +IR V I RAT GV I D ++V+ ++ + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RI++++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] Length = 885 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 365/895 (40%), Positives = 539/895 (60%), Gaps = 49/895 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 SESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ +L D+ +TVDF N+DGS QEP+VL +R P + +NG GIAVGMATNI Sbjct: 124 ECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG VA+I N +I + L++ I GPDFPTGA ILG++GI++AY GRGSI + Sbjct: 184 PPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE D+E I+VTE+PYQ NKAA++EKIAELV +K+I I+D+RDESDR Sbjct: 244 RGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRN 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A V+LN LY+ T LQ+ F N++AL +P+ TL L+ F+ FR Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+ NLDE++++IR + + A++EL++ Sbjct: 364 ETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIE------- 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSEVQ+ AIL+++L RLT L I+ E L ++I + Sbjct: 417 -------------------NYGLSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+L II+ E + +K+ TPRRT I +++D D I E ++ ++ G Sbjct: 458 LQDILAKRERILEIIETEAIEIKERHATPRRTVIELAEGELDDTDLIANEKAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + AQ R +G+SG M+++D V H S+LFFS G VY +++ Sbjct: 518 YIKRMPVNSFEAQSRATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 PIGS ARG ++ +L + + E++T+I+ E ++ Y+V TK G +++ LS F Sbjct: 578 PIGSRVARGVPIVQMLPIPRDEKVTSIVAVSEFT---DDKYLVMLTKGGYIKKTSLSAFA 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D + V ++ +++ + G + F +R GRN+ GV Sbjct: 635 NIRSNGLIAISLGEGDSLRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPL-GRNTRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM I+ + + I + L E ++ + N Sbjct: 694 KSMKLIKGDELISMDILPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNN 753 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG-IRATDVSKINEIGALVA 843 I ++L ++ G+GKR F + NR GKG I K + + A Sbjct: 754 I-----------GSWVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAA 802 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + VN+++++++++ KG +IR ++ I I SR+ GV + + + V + Sbjct: 803 LRVVNESEELMIITAKGIIIRQAIDAISIQSRSATGVRVQKLDDADAIAEVALVP 857 Score = 43.2 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 7/130 (5%) Query: 647 YVVFATKHGNVRRNKLSDFI------QINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700 +V+ T +G +R +S F + + K K +D++ ++ + ++++ T Sbjct: 757 WVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAALRVVNESEELMIIT 816 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G +R I AI R++ GVR L D + +A+V + + I + Sbjct: 817 AKGIIIRQAIDAI-SIQSRSATGVRVQKLDDADAIAEVALVPATETEETIEIEEGIMEAE 875 Query: 761 QRRLISGDTE 770 E Sbjct: 876 VVETEEDMEE 885 >gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1] Length = 874 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 539/900 (59%), Gaps = 62/900 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + + I DEMQNS L YA++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K Sbjct: 4 NDNSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKA 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCA G V+G+YHPHG+A++YDAL R+AQD+S+R L++G GNFGS+DGD PAA RY Sbjct: 64 YRKCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K +L D+ K+TVDF NYD +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 124 TEAKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D +I++PD L+ LME I+GPDFPTG +I+G+ GI+ AYATGRG I++ Sbjct: 184 PPHNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIMGKAGIRAAYATGRGKIIL 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +H E+ R I++ EIP+ + K +L+ I +LV++KRI + +RDESD+ G RV Sbjct: 244 RSRTHFEEIK-GRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRV 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A +++LN+L+ T LQ + M+AL +P+ TL +L+ ++ F+ +V+ Sbjct: 303 VIELKKDAMPEIVLNKLFALTQLQDTVGIIMLALVNGEPKILTLKQMLQHYLDFQVDVIQ 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L G +A +DEV+ IIR S + A+ +++R + D+ L Sbjct: 363 RRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDV-DMSAL 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + + LSE Q AI+++RL +LTGL R I +EL L +I + DI Sbjct: 422 LDRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +R+ GII +L +++ + RRT I +++ ED I ED VVT+++ GY+KR Sbjct: 482 LADVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDIEDLIPEEDCVVTLTNNGYIKR 541 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL+ Y+ Q RGG+G +G+ R+EDFV ++FI +H +VLF S+LG +YK K + +P GS Sbjct: 542 MPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYEVPDGS 601 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG LIN++ L++GE+I ++ + + Y+ TK G ++R+ LS + + + Sbjct: 602 KASRGFNLINLIPLSEGEKIAAMIKTTDFS---EDKYITIVTKKGKIKRSNLSLYKNVRK 658 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ LD DEI V I + T+ G +R + R + R++ GVR I L Sbjct: 659 NGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMS-RSAHGVRAIKLR 717 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+S+A V Sbjct: 718 EGDYVVSIARVREG---------------------------------------------- 731 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LTV+E G+GKRT +RI NR G G+ V + G + + V++ Sbjct: 732 -------ATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVD--DVRGHVCGIKIVDEE 782 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D IILVS G +IR+ ++IR+ R KGV + + +VV+ R E + E E E Sbjct: 783 DDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNEGAQVVAFTR-AEHDDNAETEKVE 841 Score = 88.3 bits (217), Expect = 6e-15, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 15/255 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + V+ G +KR LS+Y+ R+ G + + + D + + + + + Sbjct: 630 FSEDKYITIVTKKGKIKRSNLSLYKNVRKNG--LIAIGLDEGDEIAGVRMTDGNAQIFVA 687 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + G +R + + L +G+ + +I ++ T Sbjct: 688 TRNGMAIRI---EENKGRSMSRSAHGVRAIKLREGDYVVSIARVR------EGATLLTVT 738 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709 ++G +R +L + NR G D V + +E+DI+L + G +R Sbjct: 739 ENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRIL 798 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S IRV GR + GVR + + +G QV++ H D E++ + A+ Sbjct: 799 ASDIRVM-GRIAKGVRVMRVNEGAQVVAFTRAEHDDNAETEKVEQLTEEQAKEAEEEAKL 857 Query: 770 EEITSLKNDSSVEGN 784 EE + ++ + Sbjct: 858 EEANEVVIEADETED 872 >gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] Length = 881 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 373/902 (41%), Positives = 547/902 (60%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y Sbjct: 8 DHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 68 KKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+P Sbjct: 128 ECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNLGEV+DGC A IDNP+IDL+ LM I+ PDFPTGA I G G+K+AY TGRG +V+R Sbjct: 188 THNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA ++E IAELV++ +I I++ DES RQG R+V Sbjct: 248 AKAEIESDES-HDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGMRIV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +R Sbjct: 307 IDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 367 RTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E+Q++AI+++RL++LTGL D + E L I IL Sbjct: 416 ---------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K EL VK++ PRRT I + ED + +V+TVSH+GY+KR Sbjct: 461 NDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRT 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G Sbjct: 521 PLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDR 580 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L++ +++ + +DE N+ YVVFATK+G V++ L + + Sbjct: 581 NSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ + DE++ V N++++ + G+ VRF S IR GR S GVRG+ L Sbjct: 641 ANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRL 699 Query: 730 AKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 +GD V+ M +V ++ Sbjct: 700 DEGDDAVVGMIVVNDSET------------------------------------------ 717 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ VSE G+GKR+ D+RI+NR GKG++ V++ + G LVA+ V Sbjct: 718 ---------ENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTE--KTGRLVAIKNVT 766 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907 D++ +++++ G +IR+ V + R+ RAT+GV + + K++ + SV ++ SE+ E Sbjct: 767 DDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826 Query: 908 ST 909 Sbjct: 827 EE 828 >gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] Length = 828 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I+++++KG +IR V I RAT GV I D ++V+ ++ + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RIR+++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150] gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150] Length = 823 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V +T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G+TGI AY TG+GSIV+R Sbjct: 182 PHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKTGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPGRVIAIIKEELDESKRKFGDARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S N ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-ENNHLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF + IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L +SEKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ N Sbjct: 705 ----TDDQEVLIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GHLAGIATVSGN 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+V E+ + Sbjct: 759 EDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSARIVTFALVEPEEVVKAPEADQ 818 >gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 370/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + +IL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLANIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822] gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822] Length = 852 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 373/904 (41%), Positives = 541/904 (59%), Gaps = 62/904 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I ++ EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 QPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LIEG GNFGS+D DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + + LL D+ +TVDF +DGS QEPVVL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VDG +A+I NP+I LM+ I GPDFPTG ILGR+GIK+AY +GRGSI + Sbjct: 184 PPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITM 243 Query: 251 RGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DR+ I+VTE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR Sbjct: 244 RGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A A V+LN LY+ T +Q+ F NM+AL +P+ L L F+ FR Sbjct: 304 GMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V++RRT Y L KA +R H+L GL +A+ANLD ++++IR + + +A+REL+++ Sbjct: 364 QVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQ------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSEVQ AIL+++L RLT L + I+ E L +I + Sbjct: 418 --------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL R R+ II++EL +K TPRRT+IVE + D D I E V+ ++ G Sbjct: 458 LTDILQRRERVDQIIQEELTQLKSTHATPRRTQIVEEEGGIVDIDLIANEQAVILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P++ + Q R +G+SG ++++D V H +LFFS G VY +++ Sbjct: 518 YIKRMPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG ++ +L + + E+IT+++ E + Y+V T+ G +++ LS + Sbjct: 578 PSSSRTARGVPIVQMLPIPKDEKITSMVAVSEFT---EDQYLVMLTRQGYIKKTALSAYA 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V +E+ I++ T+ G + F +R GR + GV Sbjct: 635 NIRANGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPI-GRTARGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 R + L D++IS+ I+ I + +++ E Sbjct: 694 RSMKLKGTDEIISVDILP-----------------------GQVVANIGTSEDEIEDENL 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 SEE E ++L ++ G+GKR FR+ NR+G G++A N L A+ Sbjct: 731 ESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRF--KNAQDQLAAI 788 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN D++++V+ +G +IR V+ I SR G+ + D+ + +V + + D Sbjct: 789 HIVNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGIRVQRLDDDDAIAAVALVPPAGEDD 848 Query: 905 EAES 908 E+E Sbjct: 849 ESEE 852 >gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5] gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5] Length = 821 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 371/907 (40%), Positives = 550/907 (60%), Gaps = 88/907 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + ++ I V I EM+++Y+ YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MSEETLFPED-----IQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +NK Y K ARI G+V+GKYHPHG++A+YD + RM QD+SLR LI+GQGNFGSV Sbjct: 56 HELGVAYNKPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSV 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL++ + LL DL K+TV+F+ NYD + QEP +L AR PN+L+NG Sbjct: 116 DGDSAAAMRYTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSS 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVDG + ++D P+ D+ +M++I+GPDFPT I G+ GI +A Sbjct: 176 GIAVGMATNIPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDA 235 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + IE + RE I+VTEIPYQVNK+ +LEKI ELV+EKRI IADLR Sbjct: 236 YRTGRGRIRMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+V+E+KRG A+ ILN+LY++T ++ F V +AL P L IL+ Sbjct: 296 DESDREGMRIVVEIKRGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEY 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R E+V+ R K+ L A +AH+L GL +A+ NLDEV+ IR S + A+ +L+ R Sbjct: 356 FIEHRREIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIAR 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S+ Q +AIL++RL RLTGL + I + + Sbjct: 416 --------------------------FQFSDEQAQAILDMRLQRLTGLEIEKIIRDYEEV 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + DIL++ SR++ II+ EL ++++ PRRT I++ +++ ED I E V+ Sbjct: 450 LALIDDLQDILANDSRVIDIIRTELHEIREKYADPRRTIIIDDHEEIDLEDLIADEPTVI 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+++ GYVKR P Y++Q RGGKG+ G+ +++ DFVTD+F+ STH ++ F+ G VY Sbjct: 510 TLTNDGYVKRTPADTYKSQHRGGKGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P +RGKA++N + L + E+I+T+ P E + +++F TK+G ++ Sbjct: 570 IKAYNIPEQGRNSRGKAIVNFVDLEKDEKISTVFPVREFS---EDKFLLFITKNGIAKKT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS++ I + G A+ LD DE++ V N +++TT+ G + F +R GR Sbjct: 627 PLSEYANIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRAV-GRV 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GV+GI+L D V+S + Sbjct: 686 SRGVKGITLVNNDYVVSAETISKDIDPS-------------------------------- 713 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +ILTV++ G+GKRT + ++R+ +R GKG + N G Sbjct: 714 ------------------YILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN--GL 753 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V D D+I+L+S +G +IR+ IRI R T+GV + ++D+R++SV + ++ Sbjct: 754 VVRGLQVVDGDEILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVA-VAKT 812 Query: 901 EIVDEAE 907 + +EA+ Sbjct: 813 DDEEEAQ 819 >gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228] Length = 864 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 373/901 (41%), Positives = 555/901 (61%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +++ + + I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K Sbjct: 2 DQKAARVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R +L++G GNFGS+DGD AA R Sbjct: 62 PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ A ++ D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGM+T+ Sbjct: 122 YTEARMSPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTS 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +I+ P+I+ LM I+GPDFPTG I+GR I AY GRG + Sbjct: 182 IPPHNLGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + +E S R+QI+V E+PYQVNKA +++KIA+LV+ +++ I+D+RDESDR G R Sbjct: 242 VRAKTRVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ V+LNQLY+++ LQ FSV M+AL +P+ +L IL+ ++ ++EVV Sbjct: 302 IVIELKREATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L+KA DRAH+L G IA+AN+DE+V +I+ + +TAR LM+ Sbjct: 362 RRRTQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLME---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q AIL +RL LTGL RD I +E L +I Sbjct: 412 ----------------NYKLSETQANAILRMRLQSLTGLERDKIESEYTDLQEQITYYRS 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LL IIK+E+L++K + + RRT I+ D+E ED I E +VVT+++ GY+K Sbjct: 456 ILASEEKLLEIIKEEILAIKAKYNDERRTSIMNRATDLELEDLIEEEQIVVTMTNQGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PL +YR+QRRGGKG G+ ++EDFV ++F +TH LFF++ G VY+ K +++P Sbjct: 516 RMPLDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPET 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QARG A+IN+L L +GE+I ++P E + Y++ ATK+G +++ L ++ N Sbjct: 576 GRQARGTAIINLLELEEGEKINAVIPIKEFP---ADAYLIMATKNGLIKKTALEEY-NTN 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ L DE++ V + +I L T+ + + F + +R GRNS GV+GI+L Sbjct: 632 YTGLIAINLRENDELIGVRVIEAKENIFLVTRNAKAIHFSEADVRSV-GRNSYGVKGINL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI + I Sbjct: 691 ETEDEVIDLGI------------------------------------------------- 701 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L ++E G+GKRT ++R+ NR GKGI ++++ N G L A V+D Sbjct: 702 ----DSAGDELLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKN--GQLAAARIVDD 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++ ++ G +IRV +EI R T GV I + ++++VVS+ RI + + D+ ++ Sbjct: 756 SLEMMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNK 815 Query: 910 E 910 E Sbjct: 816 E 816 >gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] Length = 820 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 362/893 (40%), Positives = 543/893 (60%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL +++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLREILGSYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV++IIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ +L +EDED I ++++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSLEDEDLIEETNVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ +D S + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDDGESIQTIINVAQDRS--EDAYLFFTTRSGLVKRTSVAEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF S +R GR++ GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G + Sbjct: 693 PG-----------------------------------------------------DQVVG 699 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + +L ++EKG+GKRT + ++ R GKGI+ +V+ N G L + V + Sbjct: 700 ASVITDQDEVLIITEKGYGKRTRADEYPTKGRGGKGIKTANVADKN--GPLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + ++++++ G +IR V I R+T GV + +D ++V+ ++ E Sbjct: 758 EDLMIITNTGVMIRTSVANISQTGRSTMGVKVMRLDQDAQIVTFTTVQADEKD 810 Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 95/239 (39%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + +Q + + +F +S R S + + L Sbjct: 382 IALDHIDEVIKIIRNSQTD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + G + Sbjct: 433 ERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +D+++ ++KG + R+ EI R KG V + E + ++ + + D Sbjct: 550 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGESIQTIINVAQDRSED 608 >gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] Length = 859 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 354/894 (39%), Positives = 544/894 (60%), Gaps = 86/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 ARAEIESGQA-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALIHGRPKTLNLRDLIKYFIEHRREVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M + + Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTE 815 >gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] Length = 929 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 365/892 (40%), Positives = 527/892 (59%), Gaps = 91/892 (10%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+ Sbjct: 79 KEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVI 138 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHG++A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL K A L Sbjct: 139 GKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMEL 198 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 L DL KDTVD++PNYD S EP L AR+PN+LVNG GIAVGMATNI HN+ E ++ Sbjct: 199 LRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEAT 258 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +ID+PD +D LM+I+ GPDFPTGA+I+G GI+ +Y TGRGSI +R +H+E T Sbjct: 259 CYLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVESTKTG 318 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 R ++V TEIPY VNK + EKIA LV EKRI I+D+RDES ++G R+VIELK+G V Sbjct: 319 RSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQV 378 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 +LN LY+YTSLQ+ F N +AL P+ +L +L+ ++ + +VV RRT++ L KA+ Sbjct: 379 VLNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAH+L G IA+ ++DEV+ IIR S A L++R Sbjct: 439 RAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIER---------------------- 476 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 S QT AILE++L RLTGL RD I EL+ L I D+L+ ++LG+IK Sbjct: 477 ----FGFSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIK 532 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 +E+ + + RRT+I D++ ED I EDMVVT++H GYVKR+P++ YRAQ+RG Sbjct: 533 EEMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRG 592 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG SGV ++++D + ++FI STH VLFFSS G VY+ KV LP G+ QARG A++N+L Sbjct: 593 GKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLL 652 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 GE+I +++ + Y++FAT G V++ ++ + + R G IA+ + + D Sbjct: 653 PFEDGEKIASVISCRAFP---EDEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGD 709 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +L V + I++ T G+ + F +R GR++ GVRGI++ G +V+ M Sbjct: 710 RLLGVRRVKPGDKIIMATTAGKAIMFCEDQVRA-TGRDTSGVRGITMKGGTEVLGM---- 764 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 E+ + Sbjct: 765 -------------------------------------------------EITNGSGELFV 775 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V+E G+GKRT ++ NR G+G+ +++ GAL A+ V ++ ++++ T+ Sbjct: 776 VTEHGYGKRTPVAEYPEQNRGGQGVYTIQMTER--KGALAAMKVVGPQHELFIITENATV 833 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI------RESEIVDEAES 908 IRV EI RAT+GV + S + +RV +V R+ E + DE E Sbjct: 834 IRVKTAEISQTGRATQGVKMMSVDEGDRVCAVARMTAGKDKPEDSVEDEGEE 885 >gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 369/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE QT+AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + +++++D G +IR + I RAT GV + +D ++V+ + +E + Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R + + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQTQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S +G+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 372/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V N Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] Length = 828 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 368/898 (40%), Positives = 531/898 (59%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +SI DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K Y Sbjct: 2 QRDKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GK+HPHG+ A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TV F N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVV+G +A+I+NP+I +D +ME I PDFPT +I G G+K AY TGRG +VIR Sbjct: 182 PQNLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIYGYEGVKQAYHTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI EL+ K+I IAD+RDESDR G R+ Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V ++AL P+ L +++A++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLNLKEMMEAYLKHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L A +AH+L GL I + NLDEV+ IR SPN A+ +LM++ Sbjct: 362 RRTTYELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q++A+LE+RL RLTG+ RD I + N I+E I Sbjct: 412 ----------------FGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ + + IIK ELL VK RRT I + ED I +ED+V+T++H ++KR Sbjct: 456 LANPEKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G R EDFV +F+ STH +LFF++ G + KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ L GE+I + + + L+++ AT G++++ ++ F + R Sbjct: 576 RAARGRSLANIMELQPGEKIKAYINVKTFD---DPLFIIMATAKGSIKKTEIEAFSRPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE++ E+DI+L G VRF +R GR ++GV+GISL Sbjct: 633 NGIAAITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPM-GRTAMGVKGISLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G+ ISM D Sbjct: 692 EGETCISMVTSKRPDTS------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R KG+ + ++G LV + VND+ Sbjct: 709 ---------LLAVTDNGFGKRSKVEDYRLTRRGAKGVITLKAHE--KVGHLVGLLDVNDS 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D +I+++ G + R V+ IR+ R T GV I + + + + R+ +S +E E+ Sbjct: 758 DDLIIITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATARVPKSVDEEENEA 815 >gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] Length = 842 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V++NP++ LME+I GPDFPTGA+++GR+GI AY TGRGSIV+R Sbjct: 182 PHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVMGRSGIHRAYDTGRGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L ++KRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYILHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELMQR Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E ++L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDALIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 S R+ II +E+ VK + RRT ++ G + +++ ++ E+ V +T+S++GY+KR Sbjct: 456 SKPERVQTIIIEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ + + Y F TK G V+R S+F I + Sbjct: 576 RTAKGLPIVNLLKLDDGETIQTIINARK--VEVADKYFFFTTKGGVVKRTSASEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ T+ G VRF S+IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEDDELINVLLTDGTEDIIIGTRSGYSVRFNESSIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ + + Sbjct: 693 DEDMVVGASRITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GKRT++ ++ R GKGI+ +++ N G L + V+ + Sbjct: 706 ------DQEVLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKN--GPLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++++++KG +IR ++ + RAT GV + +D ++V+ + V+E STE Sbjct: 758 EDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIVTFALVEPEPEVEEVNSTE 817 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 88/248 (35%), Gaps = 17/248 (6%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + + G VKR S + R+ G + ++++D + ++ + ++ + Sbjct: 608 DKYFFFTTKGGVVKRTSASEFNNIRQNG--LRALNLKEDDELINVLLTDGTEDIIIGTRS 665 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G+ + + A G + + + ++ V+ T++G Sbjct: 666 GYSVRFNESSIRNMGRSATGVRGVKLRDEDM---------VVGASRITDDQEVLIITENG 716 Query: 656 NVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 +R S++ + + + + T + + D+++ T G +R IS Sbjct: 717 YGKRTAASEYPTKGRGGKGIKTANITAKNG-PLAGLTTVSGDEDMMIITNKGVIIRTSIS 775 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + GR ++GVR + L + ++++ A+V + + ++ + Sbjct: 776 NV-SQTGRATLGVRVMRLDQDSKIVTFALVEPEPEVEEVNSTEVSVVTDINETSPTSADG 834 Query: 772 ITSLKNDS 779 ++ Sbjct: 835 DNQAPSEE 842 >gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1] Length = 872 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 369/906 (40%), Positives = 545/906 (60%), Gaps = 56/906 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+ Sbjct: 2 SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241 Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 HIE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+E Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421 Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472 ++D S LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G V++ + + +PI S ++G+ L+N+++L E +T I+P + + N +V FAT Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF + Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 IR + R + GVRG+ + + E + Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ + +S + K+ IL E GFGKRT D+ R GKG+ A Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865 Query: 893 SVERIR 898 + + Sbjct: 866 GMACVE 871 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 19/229 (8%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D V + G VKRV LS + R GG + D + ++ Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAI--TDGEQEIM 704 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKAL--INILSLNQGERITTIMP-----------FP 637 FS+ G + K + S A+G +N+L+ E + Sbjct: 705 LFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVV 764 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQEN 694 + ++ A ++G +R + D+ R G IA+K +++ T E Sbjct: 765 SLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEE 824 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 D++L + G VR P++ I AGRN+ GV+ I +A + ++ MA V H Sbjct: 825 DVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEH 872 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 57/195 (29%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R D + + + + + ++L ++ +LTVS G+ K D++ R Sbjct: 511 RAELIDIRDEFGDERKTDIVDARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKR 570 Query: 823 SGKGIRATDVSKIN---------------------------------------------- 836 GKG AT + + + Sbjct: 571 GGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNL 630 Query: 837 ---EIGALV-AVFPVND-NDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 E LV A+ PVND D+ + + GT+ RV +++ R G+ A+ Sbjct: 631 INLESDELVTAILPVNDLKDENSFVFFATASGTVKRVALSQFANL-R-AGGLRAIDLAEG 688 Query: 889 ERVVSVERIRESEIV 903 + ++ V I + E Sbjct: 689 DTLIGVA-ITDGEQE 702 >gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] Length = 841 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 368/917 (40%), Positives = 522/917 (56%), Gaps = 95/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + + + V I EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTETLPPN---SRGRVEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 58 YDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L D+ +DTVDF NYDG QEP VL +R PN+LVNGG Sbjct: 118 GNDPAAAMRYTEARLDPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EVVDG + +DNPD L ALM+ I+GPDFPT ILG G Sbjct: 178 GIAVGMATNIPPHNLREVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGTQG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +R V +E+ + R +VVTE+PYQVN ++E IA L R+ +I I Sbjct: 238 IADAYRTGRGSIRMRAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGI 297 Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+ DES+ + G R+VI LKR A A V+LN LY++T LQ F VNM+AL P L Sbjct: 298 ADIADESNSRGGMRIVITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAHVL GLA A+ +LD V+ +IR SPN + AR Sbjct: 358 QMVRHYVNHQIDVIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEART 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + EVQ AIL+++L +L L R I + Sbjct: 418 GLME--------------------------LLDIDEVQATAILDMQLRKLAALERQRILD 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L +I + D+L R I++ ELL + ++ RRT+I+ D+ ED I Sbjct: 452 ELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYGDDRRTKIIPYEGDVSIEDLIAE 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH VLFF++ Sbjct: 512 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNK 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI +++ P E Y++ TK G Sbjct: 572 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDERIASVIQIPNYEV---APYLILGTKKG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+DF G I + L DE++ + E+D+LL + GQ +RF + + Sbjct: 629 LVKKSRLADFDSPRSGGLIGINLREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ +G +++S+ ++ Sbjct: 689 RPM-GRATSGVLGMRFNEGAELLSINVIKPGT---------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L +E G+ KRT+ D+ + R GKG+ Sbjct: 720 -------------------------FLLVATEGGYAKRTAVEDYPVQGRGGKGVLTIQHD 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + + G LVA V+ +D++ ++ G +IR P E+R ASR TKGV + + + +++ Sbjct: 755 E--KRGRLVAALIVDADDELYAITSSGGVIRTPAAEVRRASRQTKGVRLINLGEGNTLLA 812 Query: 894 VERIRESEIVDEAESTE 910 V R + AE E Sbjct: 813 VARNADRPSDVSAEEAE 829 >gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301] Length = 822 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] Length = 864 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 374/879 (42%), Positives = 537/879 (61%), Gaps = 40/879 (4%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GK Sbjct: 1 MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143 YHPHG+ A+YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYTECRLQ + LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG V Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--- 260 A+I NP+I LM+ I GPDFPTGA +LG +GI+ AY TGRGSI +RGV+ IE Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240 Query: 261 -GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DRE I++TE+PYQ NKAA++EKIA++V EKR+ IAD+RDESDR G R+VIELKR + Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN LY+ T LQ+ F NM+AL KPE L L+ F+ FR E + RRT+Y L K Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A R H+L GL IA++ LDE++ +IR +P+ TA+ EL+ Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELIT-------------------- 400 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSEVQ AIL+++L RLT L D IR E L +I + DIL+ R R+L Sbjct: 401 ------NYGLSEVQADAILQMQLRRLTALEADKIRQEHEDLQTQIADLQDILARRERILE 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 II+ E+ +K+ TPRRT I+ G ++++ D I E ++ V+ GY+KR+P++ + AQ Sbjct: 455 IIETEIAQLKESFSTPRRTVILPGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQ 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 R +G++ ++D+D + H S+LFFS G VY K +++P+ S +RG A++ Sbjct: 515 SRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 +L + + E+IT+I+P E Y+V TK GN+++ +L+ F I +G IA+ L+ Sbjct: 575 QMLPIPREEKITSIVPVDEFSR---EEYLVMLTKGGNIKKTELASFSNIRANGLIAISLE 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVIS 737 D++ V E+ IL+ ++LG + F +R + R + GVR + L KGD+++ Sbjct: 632 EGDQLRWVRRARVEDSILVGSRLGMAIHFRCTHEQLRPLS-RATRGVRAMKLKKGDELVG 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M I+ A D + + + E + ++ + +E Sbjct: 691 MDILPAAILDTLNTDEPETAEIEAVEIEAVEIEAVEIEAVETENQEETAE--VTSTGSIG 748 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856 ++L ++ G+GKR FR+ NR+G+G+ AT L + V ND+D+I++V Sbjct: 749 PWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIMMV 808 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + +G +IR VN I I SR+ GV + +++ + V Sbjct: 809 TKRGIIIRQAVNAISIQSRSATGVRVQRLDEEDAINGVA 847 >gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] Length = 864 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 372/907 (41%), Positives = 546/907 (60%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD A Sbjct: 63 NDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNL EV+DGC A IDNP ID D LME I+ PDFPTGA I G G+++AY TGRG Sbjct: 183 ATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIYGLQGVRDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IVIR + IE + ++IV+TEIPY VNK ++E IA+LV+E ++ I++ DES RQ Sbjct: 243 RIVIRAKAEIE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL +P L +K FV R Sbjct: 302 GMRIVIDVKREANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLALKDCVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV +RRT++ L KA++RAH+L GL IA N+DEVV IIR S P A++ L R Sbjct: 362 EVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL D + E L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAH 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VK++ RRT+I+ + ED + +V+TVSHLG Sbjct: 456 LQQILEDPELCKKVMKDELNEVKEKYGDDRRTKIIPAEHEFNAEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFREQARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G+ A+G+A+ N+L++ + + I+ +DE N+ YVVFATK+G V++ L Sbjct: 576 PEGAKDAKGRAIQNLLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + + DE++ V N++++ + G+ VRF IR GR + GV Sbjct: 636 YSRPRTNGVIAINIANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTM-GRTATGV 694 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RGI L KG DQV+ M +V + Sbjct: 695 RGIRLDKGDDQVVGMIVVNDSV-------------------------------------- 716 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA Sbjct: 717 -------------QETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNIT--DKTGRLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D++ +++++ G IR+ V + R+ RAT+GV + + K++ + SV + SE+ Sbjct: 762 IKNVTDDNDLMIINKSGITIRLAVADCRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EATVEEE 828 >gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673] gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673] Length = 850 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 372/901 (41%), Positives = 542/901 (60%), Gaps = 92/901 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 EPNVFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ G V +IDN + L+ ++EI++GPDFPTGA ILGR GI+ AY T Sbjct: 182 NIPPHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V IE + + +IVVTE+PY VNKA ++EKIAELV+EK++ I DLRDES Sbjct: 242 GRGKIRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G RV IEL+R +A+V++N+L ++T LQ F V M+AL +P L +L+ ++ Sbjct: 302 NREGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYYLQ 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL A+ ++DEV++IIR S N A+ +LM+R Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSE+Q +AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ +LLG+I++E++ + D+ RRT I DM ED I +D+VV ++ Sbjct: 456 IAELKAILADEKKLLGVIREEIIVISDKYGDERRTAIGYDEYDMSAEDLIPDDDVVVAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GY+KR+ +++Q RGGKG G+ DED++ DL + + H V+FF++ G VY+ K Sbjct: 516 NFGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N+L L GE+IT+I+ E E ++ Y+ AT++G V++ L Sbjct: 576 YEIPEAGRTARGTAIVNLLQLMPGEKITSIIAMKEFE---DDKYLFMATRNGMVKKTSLK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L TK G C+RF + +RV GR S+G Sbjct: 633 EYENVRKNGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRV-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ + D+VI M + + Sbjct: 692 VIGMKFDEDDEVIGMQMSSQGEC------------------------------------- 714 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L SE G+GKRT +F NR GKG+R + I++ G L+ Sbjct: 715 ----------------LLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKI--IDKTGDLIG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901 V+++ +I+L++++G +I++ VN+I I R T GV + S D V S+ ++RESE Sbjct: 757 AKLVDNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAVASIAKVRESE 816 Query: 902 I 902 Sbjct: 817 N 817 >gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] Length = 873 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 374/885 (42%), Positives = 534/885 (60%), Gaps = 63/885 (7%) Query: 11 EEEKGI---TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 EE I VSI DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRIL+ M + + Sbjct: 2 EETSNIQQKVPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + KCAR+ G+V+GKYHPHG+ A+YDAL RM Q +SLR LI+GQGN+GSVDGD PAA Sbjct: 62 TGAHKKCARVVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL + A LL DL KDTVDF PNYD S EP VL A++P +LVNG GGIAVGMA Sbjct: 122 MRYTESRLSRMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNLGE++D +A+I NPD+ L+ L+ ++ GPDFPTG +I G++GI AY TGRGS Sbjct: 182 TNIPPHNLGEIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGS 241 Query: 248 IVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 I +RG S +EK GDREQ+V TEIPYQVNKA ++ KIAE ++EKRI I+++RDESDR+ Sbjct: 242 ITMRGRSQVEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDRE 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+ELK+ V+LNQLYR T LQ+ F V +++ +P +L L F+ R Sbjct: 302 GMRIVVELKKDIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRR 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN-AS 425 EVV RR ++ L +A + ++ GL +A +++D +V IR S +P+ AR L + Sbjct: 362 EVVTRRCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLG 421 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + + + G +LSE Q +AILE+RL+RLTGL R+ + E L I+ Sbjct: 422 EFLRRAGRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIE 481 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL+ L+ +I EL +K RRT IV +++ ED I EDMVVT+SH Sbjct: 482 RLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHA 541 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR P S YRAQRRGGKG G+ R+ED+V+ LF+ STH+ V FFS G V+ +KV+ Sbjct: 542 GYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYE 601 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G+A++N + + GE++ I P P + +VV T+ G +++ L+++ Sbjct: 602 IPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFD---GETFVVTLTRRGQIKKTALNEY 658 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 G I ++++ D++ + + ++++ T+ G +RFP +R GR ++GV+ Sbjct: 659 ENYRDKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP-TGRATMGVK 717 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+ + + Sbjct: 718 GIELDEGDVVVGLGVSGDGRDR-------------------------------------- 739 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L V E+G+GK+T +FR+ +R GKG+ D S+ N G +V V Sbjct: 740 --------------VLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN--GPVVGVA 783 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 V+ +D++++V+D+G +IR +EIR R +GV I +DER Sbjct: 784 MVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + M + + + + K + + +E + ++L +E + Sbjct: 476 LSQTIERLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMV 535 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S G+ KRT + +R R GKG+ + + + + L F + + + SDKG Sbjct: 536 VTISHAGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQL---FVASTHSYVFFFSDKG 592 Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903 + V EI A R KG I + E+V ++ + + Sbjct: 593 KVFVKKVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGE 638 >gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] Length = 859 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 364/901 (40%), Positives = 540/901 (59%), Gaps = 85/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I + ++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ+WS R L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ ++ NPD LME I GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE +E+I+V E+PY VNKA ++E+IA+L R+KRI I DL DESDR G R Sbjct: 243 VRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+++R SA V+LN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ +E V+ Sbjct: 303 VVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEIVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y KA RAH+L GL IA+ ++DE++RIIR S + A+ L++ Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE Q++AIL++R+ RLTGL RD I E L I + D Sbjct: 413 ----------------TYGLSEKQSQAILDMRMVRLTGLERDKIEAEYTELMALIADMAD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+ II+ ELL V++ RRT ++ +L +EDED I ED+V+T++ GY+ Sbjct: 457 ILANPERVHTIIETELLEVQERFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S +++QRRGG+G G+ + D+DF+ L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPSSEFKSQRRGGRGVQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ GE + ++ + LY+ F T+ G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGVDSGETVQAVINVRGEAE--EGLYLFFTTRLGTVKRTDVKAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE++SV + +I++ T +G V F +R GR + GVRGI Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI + Sbjct: 694 LRENDYVIGV-------------------------------------------------- 703 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++ +L ++EKG+GKRT + ++ I R GKGI+ +++ N G L + V Sbjct: 704 ---DLLTEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L+++ G +IR V+ + RAT GV + A+D +V ++ ++ I +E + Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVKVSTMAKVDAEVIKEEMDE 818 Query: 909 T 909 Sbjct: 819 A 819 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 17/254 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LG VKR + + R G +V+++ D + + + + +++ + +G+ Sbjct: 618 TRLGTVKRTDVKAFSNIRSNG--LKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFH 675 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G I R+ + + V+ T+ G +R K Sbjct: 676 EKDVRNMGRTAGGVRGI---------RLRENDYVIGVDLLTEDSEVLIITEKGYGKRTKA 726 Query: 663 SDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 S++ I G +K + + T + DI+L T G +RF +SA+ G Sbjct: 727 SEY-AIKGRGGKGIKTANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNVSAV-SQTG 784 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R ++GVR I +A+ +V +MA V + + S + + ++ Sbjct: 785 RATLGVRVIRVAEDVKVSTMAKVDAEVIKEEMDEAGIISESPSIEDSELNESIQENDTSN 844 Query: 779 SSVEGNISEERCQE 792 +S E Sbjct: 845 NSDNDTEGNNDLTE 858 >gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 814 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 364/896 (40%), Positives = 559/896 (62%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I +V + ++M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EDNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ KDTVDF PN+D EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D CVA + NP+I ++ L +I+ GPDFPTGA ILG++GIK+AY TGRG + +R Sbjct: 183 PHNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ IE +RE+I+V+EIPYQVNK+ ++EKIA+LV++K+I I+D+RDESDR+G R+V Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ++A+++LN LY+YT L++ F + +AL P+ L +++ ++ ++EVV R Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + + ++ ++ Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q++AIL+++L RL+GL D + E L I L IL Sbjct: 412 ---------------FNLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETISYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S L+ +I E+ +KD+ RR++I+ +++ E+ I +ED+++T+++ GY+KR+ Sbjct: 457 NSEENLIKLIISEMEEIKDKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTNDGYIKRL 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+SLG VY K + +P GS Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 Q+RG A+INIL+L GERIT +M E + +V TK G +++ + +F I ++ Sbjct: 577 QSRGTAIINILNLESGERITEMMTLSELN---EDSQIVLQTKDGTIKKTEAENFTNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D+++SV +E +++++TK G ++F +R GR + GVR I LA+ Sbjct: 634 GIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSM-GRIAQGVRAIKLAE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+SM I Sbjct: 693 GDEVVSMNI--------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K E ++L V+E GFGK+TS +F+ NR GKG++ V+ ++ G +V PV+ ++ Sbjct: 702 --KGDETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVVDTLPVDLDN 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906 I++VS G +IR+ V +I I R T GV + + +R+VSV + E +E Sbjct: 758 DIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTKYSALEEEEED 813 >gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1] gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1] Length = 840 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 94/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG G Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+ RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT D+ + R GKG+ Sbjct: 723 -------------------------YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K + G LV VND+D++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 K--KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRES--EIVDEAEST 909 + R + E D AES+ Sbjct: 816 IARNADEPDEPDDNAESS 833 Score = 81.4 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 13/235 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ + + R GG + +R ED + + S+ +L Sbjct: 616 KTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSDDDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + + P R + + + N + + ++ Y++ Sbjct: 674 LVSAQGQSIRFSATDEAL-RPMGRATSGVQGMRFNGDDELLSLNVVR------EGTYLLV 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 AT G +R + D+ R GK + + + + ++++ T G +R Sbjct: 727 ATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +R AGR + GVR ++L +GD ++++A + D+ + + Sbjct: 787 TAAKQVR-KAGRQTKGVRLMNLGEGDTLLAIARNADEPDEPDDNAESSGKGAKES 840 >gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27] gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27] Length = 805 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 377/887 (42%), Positives = 534/887 (60%), Gaps = 86/887 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I GEVMGKYHPHG+AAIYDAL RMAQ W+LR LI+GQGNFGS+DGDPPAA+RYTE R Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +L D+ KDTVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HN Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD VA+I+NP I L+ +M + GPDFPTG + + GIK AYATGRGS+ +R Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKLS-KKGIKEAYATGRGSLKVRAKV 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ G R +VVTEIPYQVNKA+++ +IA LV+ K+I DI LRDESDRQG R+ IEL Sbjct: 242 RVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRGA+ V+LNQLY++T+LQ+ F+VN++A+ +P+ +L+ +++ ++ R+EVV RR+ Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSL 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA +RAHVL GL IA+ ++DEV+ +IR S + AR LM+R Sbjct: 361 FELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +RLL +K +LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 455 ARLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLE 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ RGGKG ++ED T +F+ H +L F++ G VY+ KV+ LP QAR Sbjct: 515 SYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + ++L L + E + ++ + ++VFAT+ G V+R L ++ + ++G I Sbjct: 575 GVHVKSLLPLAEDEEVAALLSVRGLD---QEGHLVFATERGLVKRTALKEYQNLGQAGLI 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 A++L D ++ V E++ +L T+ GQ +RFP+ +R GR++ GV G+ K D Sbjct: 632 AIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPED 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ +V + Sbjct: 691 RVVSLVVVKPGEMVD--------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L+VS +G+GKRT ++ + R G G+ VS ++G L A+ V + + Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDL 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++S +G IR PV EIR SRAT GV + + +D+ V S + E Sbjct: 758 LVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%) Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + + + + L S + + E + +L + Sbjct: 494 EDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFT 553 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV----------------- 847 +G R Y+ R +G+ + + E + A+ V Sbjct: 554 NRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGHLVFATERGL 613 Query: 848 ----------------------------------NDNDQIILVSDKGTLIRVPVNEIRIA 873 + D+ IL + +G IR P+ E+R Sbjct: 614 VKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRAT 673 Query: 874 SRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 R T+GV+ K ++RVVS+ ++ E+VD Sbjct: 674 GRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705 >gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] Length = 862 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 386/905 (42%), Positives = 567/905 (62%), Gaps = 69/905 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K IT + I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +G WN+ Sbjct: 2 NDLAKEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+Y+A+ RMAQ + +R LI+GQGNFGSVDGDP AA R Sbjct: 62 SYKKSARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ LL DL K+TVD+ NYDG+ Q P +L R PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI +D+LM+ I GPDFP+ A+I G+K AY TGRG I Sbjct: 182 IPPHNLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYRGLKEAYETGRGKIY 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR S IE RE IV+ EIPYQ+NK+ +LEKIAELV+ KRI I +LRDESD+ G Sbjct: 242 IRARSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++K A ++++LN LY TSLQ F +NMVAL+ +P+ +L IL AFV R + Sbjct: 302 RIVIDIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQPKTMSLKDILSAFVCHRRSI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR + L KA +R HVL GL +A++N+D V+ +I+ + + A EL + W +++I Sbjct: 362 ITRRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNII 421 Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++ I + I D Y ++ Q +AILELRL +LT L + + E ++ Sbjct: 422 NMRKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENV 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539 +++ + +L + S L+G+I+QEL+S+K+E + PRRT I + +++ E+ I + D+V Sbjct: 482 LKKMENLICVLQNPSSLMGLIRQELVSIKEEYNDPRRTEISENIVSNIDLENLINQRDVV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+S+ GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y Sbjct: 542 VTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+RLP + +RG+ +IN+L L+ ERIT I+P + V AT G V++ Sbjct: 602 WMKVYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQ---VFMATSSGFVKK 658 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L +F + G IA+ L++ DE++ + +N+++L T G+ VRF + +R GR Sbjct: 659 TALMEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQVRSM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRG+ L +GD+V+S+ I Sbjct: 718 SASGVRGVHLLQGDRVVSLII--------------------------------------- 738 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + ILTV+E GFGKRT+ ++ + +R+ +G+ + V++ N G Sbjct: 739 --------------PKDQSSILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERN--G 782 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +V V+ DQI++V+D G L+R+ V+E+ I R T+GV++ TA DE VV ++R+ E Sbjct: 783 NVVGAVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVMLIRTACDEHVVGLQRVVE 842 Query: 900 SEIVD 904 S ++ Sbjct: 843 SVEIE 847 >gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] Length = 851 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 354/910 (38%), Positives = 547/910 (60%), Gaps = 89/910 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV Sbjct: 2 SEGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSA 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY Sbjct: 62 HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K + +L D+ K+TVDF+ N+D + QEP V+ + P +L+NG GIAVGMATN+ Sbjct: 122 TEARMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL EVVDG +A IDN DI++D L+ I+ PDFPTG +I G G++ A+ TGRG IV+ Sbjct: 182 APHNLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R E+ + RE I+VTEIPYQVNKA M++ A+LV +K+I I+++RDESDR G RV Sbjct: 242 RAKVGFEEVN-GREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRV 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V ELKR A +V+LN LY+YT LQS FSVN +AL +P+ L ++ FV R +VVV Sbjct: 301 VYELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIYHFVEHRHDVVV 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA +RAH+L GL IA N+DEV++IIR S + + AR L++R Sbjct: 361 RRAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIER---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D +R E + I ++ Sbjct: 411 ----------------FKLSEIQARAIVEMRLRQLTGLEQDKLRAEYEEIMKLITYLKEL 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S+ + +IK EL ++D+ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 455 LASKEMRMQVIKDELAEIRDKYGDERRSQIEYSGGDVSIEDLIADESVVITISHAGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS Y+ Q RGG G+ RD+DF+ LF+ + H +++F+ G Y +V+ +P G+ Sbjct: 515 TSLSEYKTQNRGGVGQKSAGTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGT 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N++++ +++ + + D+ + ++ TK G V++ L + + Sbjct: 575 KASKGRAIQNLINIESDDKVKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ + DE+L + + +L+ K G+ VRF R GR + GVRGI+ Sbjct: 635 RVNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPM-GRTASGVRGIT 693 Query: 729 L-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D+VI + V D + + Sbjct: 694 LADENDEVIGIVTVNKEDVNETQ------------------------------------- 716 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGAL 841 IL V+E G+GKRT + +RI+NR GKG++ ++++ + GAL Sbjct: 717 ------------ILVVTENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITE--KTGAL 762 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RES 900 +A+ V D+D +++++ G IR+ V+++R+ RAT+GV + + ++ + +V ++ RE Sbjct: 763 IAINNVTDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLINIKGNDSIAAVTKVLRED 822 Query: 901 EIVDEAESTE 910 E + E+ E Sbjct: 823 EEIVLDENGE 832 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 89/244 (36%), Gaps = 16/244 (6%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 + V+ G VK+ L Y R G + + +++ D + + + + VL G + Sbjct: 615 IMVTKQGQVKKTSLEKYSKPRVNG--VAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMV 672 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + + P R + + ++L + ++ N ++ T++G +R Sbjct: 673 R---FEEEKTRPMGRTASGVRGITLADENDEVIGI-VTVNKEDVNETQILVVTENGYGKR 728 Query: 660 N--------KLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPI 710 + G + + + L T ++D+++ K G +R + Sbjct: 729 TKLVEEDGVDVYRITNRGGKGVKTLNITEKTGALIAINNVTDDDDLMIINKSGLTIRMMV 788 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S +RV GR + GV+ I++ D + ++ VL D + + I E Sbjct: 789 SDLRVM-GRATQGVKLINIKGNDSIAAVTKVLREDEEIVLDENGEISDAENGTDIDSTEE 847 Query: 771 EITS 774 E Sbjct: 848 ETQE 851 >gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] Length = 863 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 367/908 (40%), Positives = 551/908 (60%), Gaps = 85/908 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM +G Sbjct: 3 ENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD A Sbjct: 63 SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+DG+ +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNPDID + LM I+ PDFPTGA I G G+K+AY TG+G Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +VIR + IE ++IVVTEIPY VNKA ++E IA+LV+E +I I+++ DES RQ Sbjct: 243 RVVIRAKAEIESHES-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL +P TL +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLTLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L GL IA N+DEVV +IR S P A+R L +R Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL + + E L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL +VK++ RRT I + ED + +V+TVSHLG Sbjct: 456 LQSILDDPELCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR LS ++ Q RGG G G R+EDF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTALSEFKEQARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G+ ++G+A+ N+L+++ + + + +DE+ N+ YVVFATK+G V++ L Sbjct: 576 PEGTKDSKGRAIQNMLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+ + DE+++V N+++L + G+ VRF A+R GR S GV Sbjct: 636 YSRPRANGVNAINIVDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTM-GRVSTGV 694 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L G D+V+ M +V AD Sbjct: 695 RGMRLDGGDDEVVGMVVVNEADK------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE G+GKR+S D+R +NR GKG++ ++ ++ G LV+ Sbjct: 718 --------------ESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVS 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D + +++++ G IR+ V+ +R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDENDLMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCKVMSSEL 821 Query: 903 VDEAESTE 910 ++ + Sbjct: 822 EAADKNDD 829 >gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS] gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS] Length = 836 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 346/917 (37%), Positives = 519/917 (56%), Gaps = 92/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGS+ +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRIV ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPNERIAQVIQIKSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+DF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKSRLTDFDSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDELLSLNVVRP------------------------------ 720 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRTS ++ R GKGI Sbjct: 721 -----------------------DTYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGNLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIA 815 Query: 894 VERIRESEIVDEAESTE 910 + R E+ + +T+ Sbjct: 816 IARNAEAGDSTDEVNTD 832 >gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152] gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152] Length = 838 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 365/890 (41%), Positives = 554/890 (62%), Gaps = 85/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ Y Sbjct: 3 EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQDWS+R ++++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK + +L D+ KDTVD N+D + QEPVVL R PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G VA I+N DI++D LM+ + PDFPTG +I G G+++A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE I+VTEIPYQVNKA M++K A+LV EK+I IA++RDESDR G R+V Sbjct: 243 AKAVIEEVK-GRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGRPEQLNLKQLIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA RAH+L GL IA N+DEV++IIR S N + AR L++R Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E + + + I + DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R IIK ELL +K++ RR+ I DM ED I +VVT+S+ GY+KR Sbjct: 456 ANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G Sbjct: 516 NLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+A+ N++++ Q + + + + +E N+ YV+ ATK G V++ L + + Sbjct: 576 NTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L G+ +RF + R GR + GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+VI M V +++ Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+RI+NR GKG++ ++S+ + G LVA+ V+ Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D++ +++++ G +IR+ V ++R+ RAT+GV + + D+ + +V ++ Sbjct: 761 DSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVAKVV 810 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 98/256 (38%), Gaps = 13/256 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + + + + V+ + G VK+ L Y R G + + +++ D + Sbjct: 593 SVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDEL 650 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 + + + + V+ + G + + P R + + ++L M Sbjct: 651 LEAKLTTGDSQVMLALASGKSIR---FEEAKTRPMGRTASGVRGITLQHENDEVIGMVAV 707 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-N 694 D S ++ ++ G +R+ L D+ G + + + L + N Sbjct: 708 NDMESN----ILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSN 763 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 D+++ K G +R + +RV GR + GVR I++ D + ++A V+H + +E Sbjct: 764 DLMIINKSGLVIRMAVEDLRVM-GRATQGVRLINIKDDDSIAAVAKVVHEEEAEEESADE 822 Query: 755 MKHMSAQRRLISGDTE 770 ++ + S + E Sbjct: 823 TENGTNIENNTSDNQE 838 >gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232] gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232] Length = 828 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 367/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++++++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I+++++KG +IR V I RAT GV I D ++V+ ++ + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RIR+++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 871 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 387/899 (43%), Positives = 546/899 (60%), Gaps = 67/899 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ NYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+ IDN DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV+EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L R WN ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL++V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT Sbjct: 606 LPLASRNARGKPIVNILPLEEGERITA--------------------------------- 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IL V+ ++ I + T G + P++ FA + G+ Sbjct: 633 ------------------ILPVDQFCEDKFIFMATGDGTVKKTPLTQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D D + + T+ + Sbjct: 672 AVNLRDDDSLIGVDITT---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLNDD 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + +LTV++ G+GKRT ++ + R+ +G+ + VS N G +V Sbjct: 729 DQVVSLIVPANDGDVLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E + D Sbjct: 787 QVVEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETD 845 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 15/247 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D + + + G VK+ PL+ + R G V +RD+D + + I + + ++ Sbjct: 637 DQFCEDKFIFMATGDGTVKKTPLTQFANVRANG--LIAVNLRDDDSLIGVDITTGDSDIM 694 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS G V + ++ A A + + LN +++ +++ N+ V+ Sbjct: 695 LFSKAGKVVRFSEDKVRAMGRTA---AGVRGMKLNDDDQVVSLI------VPANDGDVLT 745 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 T++G +R +LS++ R+ + + + D + + +++++ T G VR Sbjct: 746 VTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRNGPVVGAVQVVEGDEMMMITDAGTLVR 805 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GRN+ GV I A+ + V+ + + D + +S + S Sbjct: 806 TRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDELDETDLVEEENEESVSESEQETSE 864 Query: 768 DTEEITS 774 + T Sbjct: 865 QNSDSTE 871 >gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093] gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093] Length = 827 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 380/899 (42%), Positives = 533/899 (59%), Gaps = 83/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M ++G+ KY Sbjct: 6 NEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 VK A + GEV+ KYHPHG+ AIYDA+ RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 66 VKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ A +L D+ K+TVDF+ N+DG+ EP VL + PN+LVNG GIAVGMATNIP Sbjct: 126 EARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVDG +A++DNP+I LD LME I+GPDFPTG ++ RTGI+ A+ TGRGSI +R Sbjct: 186 PHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGG-VMSRTGIRQAFETGRGSIRLR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E+ IVVTEIPYQVNK ++++ A LVR KRI DIA++RDESDRQG R+V Sbjct: 245 AKVRFEERGRG-TSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELKRGA +++LNQLY+YT LQS FSVN +A+ P L L F+ R +VV R Sbjct: 304 FELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+RAH+L G IA+ LDEV+ +IR S + TAR L+ Sbjct: 364 RTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAE----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+EVQ +A+L++RL RLTGL R+ ++ E L EI IL Sbjct: 413 ---------------FGLTEVQAQAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + L +IK+EL VK RRT+I + D+ ED I E MVVT++ GY+KR Sbjct: 458 GDANELRKVIKRELREVKKNFADARRTQISDNDSDISKEDLIAEEHMVVTLTRGGYIKRT 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ YRAQ RGG+G + +++D + L + +TH +LFF+ G VY+EK++ LP Sbjct: 518 PLAAYRAQARGGRGVNAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAER 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG L NIL L + ER+ T++ + Y VFAT+ G +++ + ++ +N S Sbjct: 578 AARGSHLRNILPLAEDERVATVLSVRDFN---AEGYFVFATRQGMIKKTAIREYGNLNAS 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE++SV ++L T+ GQ +RFP + +R GR + GVRGI L Sbjct: 635 GLIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVRD-TGRATQGVRGIRLKP 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++S++++ Sbjct: 694 NDALVSLSVI-------------------------------------------------A 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L + +L V+E G+GKRT D+ + R G+G+ V+ + G LV++ V ++ Sbjct: 705 GEHLGDAELLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTP--KTGPLVSLDYVRGDE 762 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++S+ G LIR V E+ R ++GV I +RVVSV + E + A T+ Sbjct: 763 ELLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETLGRAADTD 821 >gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] Length = 851 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 352/892 (39%), Positives = 529/892 (59%), Gaps = 85/892 (9%) Query: 11 EEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+ GI VSI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI++ ++ +N Sbjct: 3 EQNSGIQQPQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELANSYN 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD AA Sbjct: 63 RPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ + A L D+ K+TVDFRPNYD + QEP VL + PN+L+NG GIAVGMAT Sbjct: 123 RYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGE+ D ++D+P + LME+++GPDFPT + G+ +AY TGRG++ Sbjct: 183 NIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGKGLSDAYHTGRGTV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +E+ + IV+ EIP+ +NK++++EKIA LV + +I I+DLRDESDR+G Sbjct: 243 KVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDESDRKGI 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+LKRG D+++N LY+YT L++ F +NM+A+ +P L L FV R EV Sbjct: 303 RVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALSCFVDHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RRT+Y L KA RAH+L GL IA+ ++DEVV +IR S +P+ AR LMQR Sbjct: 363 VIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSEVQ RAIL++RL RLTGL R+++ E L +I+ Sbjct: 415 ------------------FELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547 +L + L +K+E+ +++ TPRRT ++ ++ ED I E++V+T+S GY Sbjct: 457 SVLENPEVLRSELKREIREIRETFATPRRTEVLTDALGGIDIEDLIPDEEVVITLSRRGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR L Y+ Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P Sbjct: 517 MKRTSLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 GS A+G + N+L L +GE +TT++ E + Y +F TK G V+R+ S + + Sbjct: 577 EGSRTAKGVHINNLLPLEEGEWVTTVLAVREFA---EDKYFLFVTKRGMVKRSSASLYAR 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +SG +A+ L DE++ V +++ I+L T G +RF +R GR + GV+GI Sbjct: 634 CRKSGLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDVRPM-GRVATGVKGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L + D V++ I+ D + Sbjct: 693 ALRRQDVVVAGVILKENDQTTE-------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 I+++S GFGKRT +R+ +R GKGI V+ ++ G +V PV Sbjct: 715 ------------IMSISANGFGKRTRVDLYRLQSRGGKGIINFKVT--SKTGPVVGAMPV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 DND +I+++ ++R+ V ++R RAT GV++ + VV +R+ E Sbjct: 761 RDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 812 >gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289] gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289] Length = 860 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 361/908 (39%), Positives = 552/908 (60%), Gaps = 86/908 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L L A N+DEVV +IR S P A++ L +R Sbjct: 362 DVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 E+Q++AI+++RL++LTGL D + E + L IK+ Sbjct: 416 --------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKD 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL + R ++K EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILDNPERCREVMKAELQEVKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G A+G+A+ N+LSL G+ + + +D++ ++ +VVFATK G V++ L Sbjct: 576 PEGDKNAKGRAIQNMLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V +N++++ + G+ RF S IR GR S GV Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L + D+V+ M +V Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LV Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITE--KTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 A+ V D + +++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ SE Sbjct: 762 AIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821 Query: 902 IVDEAEST 909 + + E Sbjct: 822 METQVEEE 829 >gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] Length = 876 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 366/910 (40%), Positives = 542/910 (59%), Gaps = 92/910 (10%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +++D++ I V + +M++SY+ YA++VI RA+PD+RDG+KPV RRIL+ M+++ Sbjct: 1 MATDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNN 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K + KCARI G+ MGKYHPHG+++IY A+ MAQDW++R L++G GNFGSVDGD Sbjct: 61 GPDKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL K + ++ DL KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 MATNIPTHNL EV+ V +I+N D +LD +M+I++GPDFPTG ILG GI+ A Sbjct: 181 MATNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTRGIEEA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +RG+S IE + +I++TE+PY VNKA ++EKIAELVR+K+I I + Sbjct: 241 YRTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGIS 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S R+G R+VI+++R A+A+VILN+LY++T LQ F V M+AL +P+ L+ IL+ Sbjct: 301 DHSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQPKVLNLLQILEY 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +EEVV RRT+Y LNKA++RAH+L GL A+ +DEV+ IR S A+ L+ + Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +E Q +AI+++RL LTGL RD ++ E + L Sbjct: 421 --------------------------FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDEL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE IL+ R LLG+I+ E+ + D+ RRTRI + D+ ED I ++ V+ Sbjct: 455 QKKIKEYQAILADRKVLLGVIRDEIQIISDKFGDERRTRIGHDVYDITTEDLIPNDNNVL 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SHLGY+KR+ + AQ RGGKG G + D++ DLF+ +H ++FF++LG Y Sbjct: 515 TMSHLGYIKRMSPENFHAQNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYT 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG A+IN+L L GE+IT I+P E + N Y+ ATK G V++ Sbjct: 575 LKAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFK---ENQYLFMATKKGMVKKT 631 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + F + +SG A+ L D+++ V+ + D+ L T G +RF +R GR Sbjct: 632 PVPAFRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRA-TGRG 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S+GVRGI L D+VI M Sbjct: 691 SMGVRGIWLDGEDEVIGM------------------------------------------ 708 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L+ + +++L SE G GKRT +FRI R GKGI ++ G Sbjct: 709 -----------QLQAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNER--TGK 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V VND D+++L++ G +IR+ V+++ + R+ GV + + V S+ ++R+ Sbjct: 756 LVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVM--DSVASIAKVRKD 813 Query: 901 EIVDEAESTE 910 + + E ++ Sbjct: 814 DSDEGEEDSD 823 >gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302] gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302] Length = 867 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 369/907 (40%), Positives = 543/907 (59%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGS+DGD PA Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G G++ AY TGRG Sbjct: 183 ATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQ Sbjct: 243 RIVMRAKAEIESDES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTKY L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL D + E L +I Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VKD+ RRT I + ED + +V+TVSH+G Sbjct: 456 FQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS + Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L++ + I I+ DE+ N+ YV+FATK+G V++ L Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V N++++ + G+ VRF + IR GR + GV Sbjct: 636 YSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGV 694 Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L D+V+ M V A+ Sbjct: 695 RGMRLDGSDDEVVGMVTVNEAET------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV+ Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D + +++++ G +IR+ V ++R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDENDLMIINKSGIVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EATVEEE 828 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 104/267 (38%), Gaps = 15/267 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + V+ + G VK+ L Y R G + DE L + ++ Sbjct: 611 ETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRL--TNGRNELI 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + A G + + L+ + M + V+ Sbjct: 669 MANRNGRAVRFNENTIRTMGRTATG---VRGMRLDGSDDEVVGMVTVNEA---ETETVMV 722 Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ G +R+++ D+ NR +A+ + ++S++ T END+++ K G + Sbjct: 723 VSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTG-RLVSIKNVTDENDLMIINKSGIVI 781 Query: 707 RFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 R ++ +RV GR + GVR I+L K D + S+ V+ ++ + + + I Sbjct: 782 RLAVADVRVM-GRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWANKSEEI 840 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQE 792 DT+ S + + + ++ +E Sbjct: 841 KKDTQAEASESAEDAPFVDFEDDNKEE 867 >gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] Length = 859 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 359/894 (40%), Positives = 536/894 (59%), Gaps = 83/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKEQFPQREISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH ++ D+ KDTVDF PNYDG +EP VL AR+PN+LVNG GIAVGM TN Sbjct: 123 YTEARMSKIAHEMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNL EV+ ++ N D + LME + GPDFPTG +++G++GI+ AY TG+G+I+ Sbjct: 183 IPTHNLSEVIGAIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE S +E+I+V EIPY VNKA ++E+IAEL R+KR+ I +RDES R+G R Sbjct: 243 VRAKLDIETLSSGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE ++ ASA VI+N LY+YT LQ+ F +NMVA+ P +L IL+ ++ +EEV+ Sbjct: 303 VVIECRKDASASVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR+ + NKA RAH+L GL IA+ ++DE+V I+R S + + A+ ++ Sbjct: 363 RRRSIFEKNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I E L +I Sbjct: 413 ----------------DYKLSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQ 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 +L S + II EL+ ++ + RRT ++ G + +DED I +++VT++ GY+ Sbjct: 457 VLGSETMRYQIIYDELIEIESKFGDDRRTELMVGEIHNIDDEDLIEESNVIVTLTQNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +RAQ RGG G G+ M D+DFV + STH SVLFF++ G V+ K + +P Sbjct: 517 KRIDDVEFRAQNRGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L+L Q E + ++ E + +++F TK+G V+R SD+ I Sbjct: 577 FGRAAKGIPVVNLLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNI 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+KL DE++ V + +++I++ ++ G V F + +R GR + GVRGI Sbjct: 637 RNNGLIALKLAEGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSM-GRTATGVRGIR 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GDQV+ M+++ Sbjct: 696 LNDGDQVVGMSVLGP--------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +L V+EKG+GK+T + ++ I NR GKG++ +V++ N G LV + V+ Sbjct: 711 --------DDNVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKN--GILVGLTTVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + I+L++++G IR I RAT+GV + A+D V ++ ++ E Sbjct: 761 GEEDIMLMTNQGIAIRFHAKNISQTGRATQGVRLIRLAEDSYVSAIAKVEAIEE 814 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 14/222 (6%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 + N I+ T+ G R R R GV+G+S+ D V +M D+ Sbjct: 500 LIEESNVIVTLTQNGYIKRIDDVEFRA-QNRGGTGVKGMSMNDDDFVETMLSTSTHDSVL 558 Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE--QFILT 802 R+ + K + + +L N E + ++ E + +L Sbjct: 559 FFTNTGRVFHSKGYEIPEFGRAAKGIPVVNLLNLQQDETVQAMINVTPIEDAEVKEHLLF 618 Query: 803 VSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 V++ G KRT++ D+ I N G+ A +++ LV V + +D II+ S G Sbjct: 619 VTKNGTVKRTNASDYFNIRN---NGLIALKLAEG---DELVKVVLTSGDDNIIIASRDGY 672 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +R R GV ++VV + + + V Sbjct: 673 AVSFQETNVRSMGRTATGVRGIRLNDGDQVVGMSVLGPDDNV 714 >gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811] gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811] Length = 851 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 358/893 (40%), Positives = 532/893 (59%), Gaps = 84/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNL EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLIHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 ---------------DGYLLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T++ GY+ Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ + + Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKD-YLFFVTRLGVVKRTAVSEFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ I++ TK G VRF +R+ GR + GVRGI Sbjct: 636 RTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIM-GRAAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD VI +V D Sbjct: 695 LRDGDLVIGSDVVSLNDN------------------------------------------ 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ Sbjct: 713 -----------VLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GTLAGMIIVH 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ I++ + +G +IR + RAT GV + +V ++ ++ E Sbjct: 760 GDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRLEDGAKVATLAKVEHEE 812 Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 11/213 (5%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-----DYDE 750 I+ T+ G R P + + R GV+GI++ D V M D + + Sbjct: 507 IVTLTRNGYIKRVPQAEFKA-QNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGK 565 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 + + + + LK + + E + ++ V+ G K Sbjct: 566 VYRMKGYEVPEYGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVVK 625 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 RT+ +F SN G++A + +++V + I++ + G +R ++ Sbjct: 626 RTAVSEF--SNIRTNGLKALTLRD---DDEVLSVQITDGTQSIMIATKDGYSVRFTEEDV 680 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 RI RA GV + V+ + + ++ V Sbjct: 681 RIMGRAAAGVRGIRLRDGDLVIGSDVVSLNDNV 713 >gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] Length = 825 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 362/899 (40%), Positives = 539/899 (59%), Gaps = 86/899 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV Sbjct: 2 DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ K+T+D++ NYD + EP+VL AR P++LVNG GIAVGM Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+ G ++ NPD LM++I GPDFPTG VI+GR+GI +AY +G+G+ Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +V+R ++IE+ RE+I+VTEIP+ VNKA +++KIAEL R+K I I +RDESDR G Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E+ Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRTK+ L+KA RAH+L GL IA+ ++DE+V IIR S + + A+ L+ R Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H G Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S +R Q RGG+G G+ ++D+DF+ L STH +LFF++ G VY +K + + Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L L++GE+I ++ PE + F TK G V+R + +F Sbjct: 576 PEYSRIAKGLPIINLLQLDKGEKIQAMINVPE---GHEEGNLFFITKMGVVKRTSVEEFS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I SG IA+ L DE+ +V T + +I++ T LG F S +RV GR++ GVRG Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVM-GRSAAGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + D VI ++ Sbjct: 692 INLRENDYVIGSEVLKPG------------------------------------------ 709 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SE G+GKRT+ ++ I R GKGI T V K N G L + Sbjct: 710 -----------AEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKVGKKN--GRLAGMTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ I+L++ G +IR ++ RAT GV + + + V S+ + + E Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVPNDDDDSE 815 >gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] Length = 881 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 393/930 (42%), Positives = 559/930 (60%), Gaps = 83/930 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + SD + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV Sbjct: 59 NVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +A Sbjct: 179 GIAVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDA 238 Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG I IR + IE RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ L Sbjct: 239 YRTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGL 298 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G R+V+E+KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ Sbjct: 299 RDESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIS 358 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ R EVV RRT Y L KARDRAH+L LA+A+AN+D V+ +IR +PNP A+ L+ Sbjct: 359 AFIRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIA 418 Query: 420 RSWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGR 470 + W+ + +++ DS+ DG YL+E Q +AIL+LRL +LTGL Sbjct: 419 QPWDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 + + +E L ++I E L IL S RL+ +I++EL ++KD+ + PRRT I E D+ E Sbjct: 479 EKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADINIE 538 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I E++VVT+SH GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L Sbjct: 539 DLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 598 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FSS G +Y KV++LP S ARG+ +IN+L L Q ERIT I+P Sbjct: 599 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILP--------------- 643 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 V + + + T G + P+ Sbjct: 644 ------------------------------------VREYEEGKFVFMATASGTVKKTPL 667 Query: 711 SAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 R S G+ ++L +GD++I V D+ + + + Sbjct: 668 QDFSRPR----SAGIIAVNLNEGDELIG---VDLTDSTNEVMLFSADGKVVRFAEDCVRP 720 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 T+ + + + + ILTV+E G+GKRT+ ++ NR+ +G+ + Sbjct: 721 MGRTATGVRGMKLSDDDKVVSLIIPRGDGDILTVTENGYGKRTAQSEYPTKNRATQGVIS 780 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 VS+ N G +V V + DQI+++++ GTL+R V+E+ I R T+GV + T + E Sbjct: 781 IKVSERN--GKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGE 838 Query: 890 RVVSVERIRE----------SEIVDEAEST 909 VV ++R+ + +E++DE S Sbjct: 839 LVVGLQRVEDEDDALDDDEVNEVIDEELSE 868 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 61/424 (14%), Positives = 139/424 (32%), Gaps = 31/424 (7%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + H+L + + E + I+ N + Sbjct: 477 EHEKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADIN 536 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483 + + + + G L++ + + + D I L + + Sbjct: 537 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 596 Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 + + G + ++++ R T I+ Sbjct: 597 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVRE-------YEE 649 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 V + G VK+ PL + R G + DE DL + V+ FS+ Sbjct: 650 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TDSTNEVMLFSAD 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V + + A G + + L+ +++ +++ + ++ T++G Sbjct: 708 GKVVRFAEDCVRPMGRTATG---VRGMKLSDDDKVVSLI------IPRGDGDILTVTENG 758 Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R S++ NR+ + + + +++ + + I++ T G VR +S Sbjct: 759 YGKRTAQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 818 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GRN+ GV I +G+ V+ + V D D+ D + Sbjct: 819 V-SIVGRNTQGVTLIRTTEGELVVGLQRVEDEDDALDDDEVNEVIDEELSEAPDSDLADD 877 Query: 773 TSLK 776 + + Sbjct: 878 ANEE 881 >gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] Length = 848 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 372/891 (41%), Positives = 548/891 (61%), Gaps = 82/891 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + K Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 +++K A ++ D+ KDTVD N+D + +EP VL R P +L+NG GIAVGMATN+P H Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDG A ID+ DID++ LME ++ PDFPTG I G G++ A+ TGRG +V+RG Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRGK 244 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + E+ RE +VVTEIPYQVNKA M++K A+LV EK+I I+ +RDESDR G R+V Sbjct: 245 AVFEEVQ-GRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVYI 303 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A +++LN LY+YT+LQS FSVN +AL +PE L ++ FV R EVVVRRT Sbjct: 304 LKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVRRT 363 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 KY L KA +RAH+L GL IA N+DEV+ +IR S N + AR +LM+R Sbjct: 364 KYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMER------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E+Q +AI+E+RL +LTGL +D +R+E + L I++ DIL Sbjct: 411 -------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDK 457 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + R + IIK EL +KD+ RR+ I DM ED I E +V+T+SH GY+KR PL Sbjct: 458 KERRMQIIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPL 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y+ Q RGG G+ R+EDF+ D+F+ + H ++FF+ G + +V+ +P GS + Sbjct: 518 TEYKTQNRGGVGQKASTTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTS 577 Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G+A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + + Sbjct: 578 KGRAIQNLINIEPDDKVKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRIN 637 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ + DE+L + T +++I+L K G+C+RF S R GR++ GVRGI LA Sbjct: 638 GINAITIKEDDELLEAKLTTGDSEIMLAVKSGKCIRFEESKTRPM-GRSASGVRGIRLAD 696 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 E Sbjct: 697 --------------------------------------------------EKTDEVVGMV 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + + IL VSE G+GKR+S D+R++NR GKG++ V+ ++ G LVA+ V D+D Sbjct: 707 VVNNNDSDILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVT--SKTGELVAIKNVTDDD 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++++ G IR+ V +R+ RAT+GV + + D+ + +V ++++ E Sbjct: 765 DLMIINKSGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDED 815 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 86/210 (40%), Gaps = 22/210 (10%) Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760 RF ++ I+ + + + L + D++ S ++ D + + + Sbjct: 410 RFKLTEIQ------AKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQ 463 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + ++ + S +E + +++ E+ ++T+S G+ KRT +++ Sbjct: 464 IIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTEYKTQ 523 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKG 879 NR G G +A+ + + + V N Q ++ + KG + V EI S+ +KG Sbjct: 524 NRGGVGQKASTTRNEDFLEDM----FVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKG 579 Query: 880 ---VVIFSTAKDERVVSVERIRESEIVDEA 906 + + D++V I ++ DE Sbjct: 580 RAIQNLINIEPDDKVK--AFICTQDLKDED 607 >gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142] gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142] Length = 862 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 373/881 (42%), Positives = 535/881 (60%), Gaps = 62/881 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 4 PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRLQ + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNI Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG +A+I NPD+ L++II GPDFPTG ILGR+GI +AY TGRGSI + Sbjct: 184 PPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243 Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE DRE I++T++PYQ NKAA++E+IA+LV EKRI I+D+RDESDR Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L+ F+ FR Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + +A+ EL+Q Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS VQ AIL+++L RLT L + I E L ++I + Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II+ EL +K TPRRT IV ++ D D I E ++ ++ G Sbjct: 458 LKDILARRERIEAIIEDELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ+R +G++ ++D+D V H VLFFS G VY +++ Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG ++ +L + + E+IT+I+ E ++++V T++G +++ LS F Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSEFR---EDVFLVMLTRNGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V +E+ I+L T+ G + F +R GR + GV Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM ++ + T I D V N Sbjct: 694 KAMKLKKGDELISMDVLP-----------------------AQVTAGIGDAAEDEDVLEN 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +EE +E + +IL ++ G+GKR FR+ R+G G+RA ++ L ++ Sbjct: 731 ETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKF--KSKTDCLASL 788 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 VN D++++VS++G +IR V+ I + SRA GV + Sbjct: 789 HVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRL 829 >gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX] gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX] Length = 848 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 362/928 (39%), Positives = 520/928 (56%), Gaps = 100/928 (10%) Query: 1 MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 MT+ + + + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ Sbjct: 1 MTDVNTTPEAPDNTGGRIEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G ++ Y KCAR+ G+VMG YHPHG++AIY+ L R+AQ W++R+ L++G GNFG Sbjct: 61 AMYDSGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S DP AA RYTEC+L A +L D+ K+TVDFRPNYDG QEPVVL AR+PN+LVNG Sbjct: 121 SPGNDPAAAMRYTECKLAPLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234 GIAVGMATNIP HNL EV +G +D+PD + L++ I+GPDFPT I+GR Sbjct: 181 SSGIAVGMATNIPPHNLREVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIVGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI+ Y TGRGSI +R V IE+ R+ +VVTE+PYQVN + KIAELV+E +I Sbjct: 241 RGIEETYRTGRGSITMRAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKIS 300 Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD++DES R G R+VI LKR A A V+LN LY++T LQ F NM+AL P Sbjct: 301 GIADVKDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLR 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L +++ +VA + EV+VRRT+YLL KA +RAH+L L A+ +DEV+ +IR S + + A Sbjct: 361 LDQMIRHWVAHQIEVIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + LM+ + + +VQ RAIL+++L +L L R + Sbjct: 421 KNGLME--------------------------LLAIDDVQARAILDMQLRKLAALERQQL 454 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E + L +I + +IL S R II+ EL + ++ RRT IV DM ED I Sbjct: 455 TSEYDELMAQIADYNEILESPERQRRIIRDELAEIVEKYGDDRRTEIVPYEGDMRMEDFI 514 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT++ GY KR L YRAQ+RGGKG G ++ +D V F+ +TH +LFF+ Sbjct: 515 AEEDIVVTITRGGYAKRTRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFT 574 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + LP + +RG + N++ E I ++ + + Y+V AT+ Sbjct: 575 NKGRVYRTKAYELPELARDSRGHHVANLVPFLPDEEIAQVLALRDYD---AAPYLVLATR 631 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA- 712 G V++ KL++F SG IA+ L DE+++ +D+LL + Q +RFP S Sbjct: 632 SGLVKKTKLAEFDSARSSGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDD 691 Query: 713 -IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GV G+ A+GD ++SM ++ + D Sbjct: 692 SLRPM-GRATSGVIGMRFAEGDYLLSMDVIREGEGATD---------------------- 728 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +L +E G+ KRT + + + R GKG+ Sbjct: 729 ----------------------------VLVATEGGYAKRTPADQYPVQKRGGKGVLTAR 760 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + + G LV V+ D+I+ ++ G +IR EI+ + RAT GV + +K V Sbjct: 761 IVE--SRGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKGNHV 818 Query: 892 VSVERIRESEIVD---------EAESTE 910 V++ R E D +AE TE Sbjct: 819 VAIARNTEGMGDDAENGAHGSEDAEDTE 846 >gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] Length = 859 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 363/908 (39%), Positives = 551/908 (60%), Gaps = 86/908 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RR ++ L KA++RAH+L L A N+DEVVRIIR S P A+R L +R Sbjct: 362 DVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 E+Q+RAI+++RL++LTGL D + E L IK+ Sbjct: 416 --------------------FEFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL++ R ++K+EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+LSL G+ + + +D+ ++ YVVFATK G V++ L Sbjct: 576 PEGDKNSKGRAIQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V N++++ + G+ RF S IR GR S GV Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L + D+V+ M +V Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LV Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 A+ V D++ +++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ SE Sbjct: 762 AIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821 Query: 902 IVDEAEST 909 + + E Sbjct: 822 MESQVEDD 829 >gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222] gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222] Length = 890 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 388/893 (43%), Positives = 542/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S+ Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V + E I + T G + + FA + G+ Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D + D + + T+ Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 103/260 (39%), Gaps = 15/260 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E + + G VK+ L + R G V +RD+D + + I ++ ++ F Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + ++ A + + + L + +++ +++ N ++ T Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +L+++ R+ + + + D + + +++++ T G VR Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ + GRN+ GV I A+ + V+ + + + + +A Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETAV 866 Query: 770 EEITSLKNDSSVEGNISEER 789 +S + S G+ S+ Sbjct: 867 VSESSEEQASDASGSESDSE 886 >gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4] gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4] Length = 840 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 94/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG G Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+ RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT D+ + R GKG+ Sbjct: 723 -------------------------YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K + G LV VND+D++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 K--KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLLA 815 Query: 894 VERIRES--EIVDEAEST 909 + R + E D AES+ Sbjct: 816 IARNADEPDETDDNAESS 833 Score = 81.0 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 13/235 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ + + R GG + +R ED + + S+ +L Sbjct: 616 KTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSDDDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + + P R + + + N + + ++ Y++ Sbjct: 674 LVSAQGQSIRFSATDEAL-RPMGRATSGVQGMRFNGDDELLSLNVVR------EGTYLLV 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 AT G +R + D+ R GK + + + + ++++ T G +R Sbjct: 727 ATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +R AGR + GVR ++L +GD ++++A + D+ + + Sbjct: 787 TAAKQVR-KAGRQTKGVRLMNLGEGDNLLAIARNADEPDETDDNAESSGKGAKES 840 >gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 839 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 346/917 (37%), Positives = 516/917 (56%), Gaps = 92/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR+ Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G + +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D ++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 723 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIVDEAESTE 910 + R E + + ++ Sbjct: 816 IARNAEEAADEAVDESD 832 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G VK+ L+ + + R GG + +RD D + + S +L Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + + P R + + + N + + ++ Y++ AT Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R + ++ R GK + + ++ +++++ T G +R Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R AGR + GVR ++L +GD ++++A AD S Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVDESDGAAGSDG 839 >gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] Length = 823 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 376/895 (42%), Positives = 537/895 (60%), Gaps = 84/895 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ S + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E ++ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV T DIL+ TKLG +RF +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ + + Sbjct: 691 RGIKLNAGDVVVGAGVLNNDE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIR 898 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIP 813 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 10/219 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E ++ TK G R + R + GV G+ + D V + V + Sbjct: 501 LIADEEMVITLTKQGYIKRMNANVYRN-QHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLL 559 Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 R +K +V +++ E ++ + V+ Sbjct: 560 FFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVHEDVNLFMVT 619 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 E G KRT+ ++R R G+ A ++ + + L++V N I++ + G IR Sbjct: 620 EFGVVKRTAIEEYRNIRR--SGLNAINLDEGDR---LISVNVTTGNQDILIGTKLGIAIR 674 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +++R+ RA GV + VV + E Sbjct: 675 FSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNNDESE 713 >gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 835 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 363/907 (40%), Positives = 546/907 (60%), Gaps = 84/907 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 ++I E I +I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + Sbjct: 5 KNIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKE 64 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 MG++ N Y K ARI G+V+GKYHPHG++A+Y A+ RM QD+SLR +I+GQGNFGS+DG Sbjct: 65 MGLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDG 124 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ +L DL K+TVDF PNYDGS +EPV+L + P++L+NG GI Sbjct: 125 DFAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGI 184 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HN+ EV D V +ID+ +I + +++ I+GPDFPTGA+ILG++GIK+ Sbjct: 185 AVGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIKDYME 244 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 GRGS+ IR + IE+ RE I+V EIPYQVNKA ++ IA+LV++K+I IADLRDE Sbjct: 245 KGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDE 304 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIE+KR A+ V+LNQLY++T +Q F V M+AL +P+ + IL + Sbjct: 305 SDRDGIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEILIHHI 364 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ +++RRTK+ L KA R H+L GL IA+ N+D V++II+ S + + AR LM + Sbjct: 365 EHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK-- 422 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + L+++QT AILE+++ +LTGL R +I +E L Sbjct: 423 ------------------------LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIR 458 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I++ +L+ ++L IIK E L +K + RRT+I D ED I E++ VT+ Sbjct: 459 LIEKLRSVLADPKKVLDIIKNEALDIKRKYGDKRRTQIQAAEADFNIEDLIQEEEVAVTM 518 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+KR+PL Y+AQ RGG+G + + R+EDFV +LFI S+H+ +LFF++ G +Y + Sbjct: 519 SHAGYIKRIPLDTYKAQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMR 578 Query: 603 VWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRN 660 ++ +P G+ ++GKA++N+L L E+IT +P + Y++ T++G +++ Sbjct: 579 IYEIPEGARTSKGKAIVNLLQLQGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKI 638 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L FI + G IA+KL+ D + V+ + ++++ TK G +RF S IRV GR Sbjct: 639 ALDKFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI-GRA 697 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 GV+GI L KGD+VI M + D Sbjct: 698 GRGVKGIELKKGDEVIGMEVFSPDDVF--------------------------------- 724 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 L++SE G+GKRT +R+ R+G G+ +S+ N G Sbjct: 725 --------------------LSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERN--GN 762 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ + ND +++++++ G IR+ VN I + R T+GV + ++V ++ + + Sbjct: 763 MIGIKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKD 822 Query: 901 EIVDEAE 907 E +E + Sbjct: 823 ENSEEPQ 829 >gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] Length = 890 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 388/893 (43%), Positives = 542/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S+ Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V + E I + T G + + FA + G+ Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D + D + + T+ Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 15/248 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E + + G VK+ L + R G V +RD+D + + I ++ ++ F Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + ++ A + + + L + +++ +++ N ++ T Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +L+++ R+ + + + D + + +++++ T G VR Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ + GRN+ GV I A+ + V+ + + + + +A Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETAD 866 Query: 770 EEITSLKN 777 +S + Sbjct: 867 VSESSEEQ 874 >gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] Length = 878 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 368/907 (40%), Positives = 548/907 (60%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R LI+GQGNFGSVDGD PA Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL K+TVD N+D + QEP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNLGEV+DGC A IDNPDID D LM+ I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIYGIQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE +S + ++IV+TEIPY VNK ++ IA+L +E R+ IA++ DES RQ Sbjct: 243 RIVVRATAEIE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+V+LN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 362 DVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL + + NE N L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++K EL VK++ RRT I + ED + +V+TVSHLG Sbjct: 456 LNQILNDPELCKKVMKDELNEVKEKYGDARRTMIKPDDHEFNPEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS +R Q RGG G G RD+DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFREQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L++ +++ + D NN YVVFATK+G V++ L Sbjct: 576 PEGDRNSKGRAIQNLLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V N++++ + G+ VRF + IR GR S GV Sbjct: 636 YSRPRANGVIAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTM-GRTSTGV 694 Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L +GD V+ M +V + Sbjct: 695 RGMRLDEGDDAVVGMIVVNDPEK------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+R++ R GKG++ +++ ++ G LVA Sbjct: 718 --------------ETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNIT--DKTGRLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D++ +++++ G +IR+ V + R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDDNDLMIINQSGIVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EASVEEE 828 >gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] Length = 872 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 373/907 (41%), Positives = 543/907 (59%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD A Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNL EV+DGC A IDNPDI+L+ LM+ I+ PDFPTG I G G+K+AY TGRG Sbjct: 183 ATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 I++R + IE ++IVVTEIPY VNK ++E IA LV+E ++ IA+ DES RQ Sbjct: 243 RIILRAKAEIESDES-HDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTK+ L KA+DRAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 362 DVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL + + E + L I Sbjct: 416 --------------------FDLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +ILS ++K EL VK++ RRT+I+ + ED + +V+TVSHLG Sbjct: 456 LENILSDPELCKKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS +R Q RGG G G R+ DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSDFREQARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G+ ++G+A+ N+L++ + I I+ +DE N+ YVVFATK+G V++ L Sbjct: 576 PEGTKDSKGRAIQNLLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V EN++++ + G+ VRF IRV GR + GV Sbjct: 636 YSRPRTNGVIAINIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVM-GRTATGV 694 Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L GD VI M +V Sbjct: 695 RGMRLDDGDDAVIGMIVVDDPI-------------------------------------- 716 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE G+GKR+S D+R +NR GKG++ ++ ++ G LVA Sbjct: 717 -------------NETVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D++ +++++ G IR+ V E R+ RAT+GV + + K++ + SV R SE+ Sbjct: 762 IKNVTDDNDLMIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EASFEED 828 >gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 832 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 373/897 (41%), Positives = 553/897 (61%), Gaps = 86/897 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + +V I DEM+N Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M QMG+ +K + K Sbjct: 13 NLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPFRKS 72 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG++++YDA+ RMAQD+S R + + GQGNFGSVDGD AA RYTE R Sbjct: 73 ARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYTEAR 132 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + + +L D+ K+TVDF N+DGS QEPVVL +R+P++LVNG GIAVGMATNIP HN Sbjct: 133 MSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG +A ID+PDI +D LM I+GPDFPT VILG++GI+ AY TGRG I IR Sbjct: 193 LGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREAYETGRGRIKIRSKV 252 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313 ++ + ++QIV++EIPY VNKA +++KIAELV++KR+ I D+RDE+D + G R+V+E Sbjct: 253 AVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIRIVVE 312 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR +A ++LNQLY++T LQ + V +AL +P+ +L IL +VA ++E++VRRT Sbjct: 313 LKRDTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQILHYYVAHQKEIIVRRT 372 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 K+ L KA RAH+L G IA+ N+DEV++IIR S + + A+ LM R Sbjct: 373 KFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDR------------- 419 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+++Q +AIL++RL RLTGL R+ I E L +I E IL+ Sbjct: 420 -------------FALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILAD 466 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +LGIIK EL +KD+ RRT + D + ED I E++VVT++H+GYVKR+ Sbjct: 467 EKLVLGIIKDELTEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAA 526 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGGKG S + R+ DF+ +F STH +LFF++ G Y+ K + +P+G + Sbjct: 527 DTYRAQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTS 586 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG A++NIL L+ E ITT++ E + Y V AT+HG +++ ++D+ ++G Sbjct: 587 RGTAIVNILQLDPDESITTMIQVKTFE---ADKYFVMATRHGLIKKTAMTDYESSRKNGI 643 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + L DE++ V+ D+++ T LG +RF + + GR S+GVRGI L D Sbjct: 644 NGINLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNA-TGRMSMGVRGIGLRADD 702 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ M +++ Sbjct: 703 HVVGMDLLI--------------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +L V+EKG+GKRTS+ +R+ R GKGI+ +K + G LV + D +I Sbjct: 712 --ADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTK--KTGNLVGFSVLEDGGEI 767 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++ G +I++ ++I R+T+GV + DER+ ++ +++ E +D+ + + Sbjct: 768 MMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQNEEPLDDVDIED 824 >gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] Length = 852 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 376/903 (41%), Positives = 547/903 (60%), Gaps = 91/903 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + I SI DE+++S+L+YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G++ N+ Sbjct: 3 DTFSGNIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEV+GKYHPHG+AA+YD L R+AQD+S+R L++GQGNFGSVDGDP AA R Sbjct: 63 PYRKSATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ DTV+F PN+D S +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 123 YTEARLTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATK 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D VA+I++P++D + L I+GPDFPTG +++G GI+ A TGRGS+ Sbjct: 183 IPPHNLGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVR 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R +H E+ G+R QIVVTE+PYQVNKA +L+KIAELV++++I DIADLRDESDR G R Sbjct: 243 VRAKAHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A V+LN L+++T +Q F VN+VAL P+ + L+ ++A + EVV Sbjct: 303 IVIELKREAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L +AR RAH+L GL IA++NLDEVV IR S N ETARR L++R Sbjct: 363 TRRTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKR--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL+LRL RLT L R + + L +I+ Sbjct: 414 -----------------FRLSERQAQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEG 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 +L+ S++ GII++ELL +K RRT I + E ED I E+MV+++SH GY+ Sbjct: 457 VLADESKVYGIIREELLEIKAAYADERRTAITAQEGAEFEVEDLIAEEEMVISISHEGYL 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K VP+ +R Q RGG G +G+ +++ D++ LFI +TH +LFF++ G VY+ KV +LP Sbjct: 517 KSVPIGSFRKQGRGGVGVAGMELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPR 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G+ + N+L L GERI ++ + + Y++FAT+ G V++ D+ Sbjct: 577 MGRAAKGRHVANLLPLAPGERIAAVISTRDFD---EAEYLLFATRRGMVKKTPFRDYNTP 633 Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G IA+KL DE+++V + E++++ T+ G+ +RF +R GR + GV+GI Sbjct: 634 LKNEGIIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVRPM-GRATAGVKGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D ++SM +V AD Sbjct: 693 TLKGDDALLSMDVVSDEAAD---------------------------------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + V+EKGFGKRT+ +FR R G+G+ A V+ E G + V V Sbjct: 713 ------------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVN--GERGKIAGVQVV 758 Query: 848 NDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR----ESEI 902 ++++VS+ GT IR+ + + RA +GV + + + + V ++ ++ E Sbjct: 759 RPGLHELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKVVSSRGEPGE 818 Query: 903 VDE 905 DE Sbjct: 819 PDE 821 >gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] Length = 825 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 358/892 (40%), Positives = 538/892 (60%), Gaps = 86/892 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV Sbjct: 2 DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ K+T+D++ NYD + EP+VL AR P++LVNG GIAVGM Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+ G ++ NPD LM++I GPDFPTG VI+GR+GI +AY +G+G+ Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +V+R ++IE+ RE+I+VTEIP+ VNKA +++KIAEL R+K I I +RDESDR G Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E+ Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRTK+ L+KA RAH+L GL IA+ ++DE+V IIR S + + A+ L+ R Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H G Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S +R Q RGG+G G+ ++D+DF+ L STH +LFF++ G VY +K + + Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L L++GE+I ++ PE + + F TK G V+R + +F Sbjct: 576 PEYSRTAKGLPIINLLQLDKGEKIQAMINVPE---GHEDGNLFFITKMGVVKRTSVEEFS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I SG IA+ L DE+ +V T + +I++ T +G F S +RV GR++ GVRG Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHMGYAASFKESDVRVM-GRSAAGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + D V+ ++ Sbjct: 692 INLRENDYVVGSEVLKPG------------------------------------------ 709 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SE G+GKRT+ ++ I R GKGI T + K N G L + Sbjct: 710 -----------AEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKN--GPLAGMTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V+ I+L++ G +IR ++ RAT GV + + + V S+ + Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVP 808 >gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] Length = 986 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 362/883 (40%), Positives = 540/883 (61%), Gaps = 87/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + ++ + K A Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEVMGKYHPHG+++IY+A+ RMAQD+S+RL LI+G GNFGS+DGDP AA RYTE RL Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG GIAVGMATN+P HNL Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV +IDNP+ L+ LM + GPDFPTG +I+G GIK+AY TGRG++ IR H Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVH 371 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE R+++V+TEIPYQVNK+ + E+IA+ V EK+I I+D+RDES+R+G R+VI+L Sbjct: 372 IENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDL 431 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+GA V+LN LY+ T LQ+ FSV +AL P +L +++ ++ +++VV RRTK Sbjct: 432 KQGAVPQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTK 491 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L +A+ R H+L GL IAV N+DEVV IIR S + A+ + +R Sbjct: 492 FDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSER-------------- 537 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + ++Q AIL++RL RLTGL RD++ +++ L +I D+L + Sbjct: 538 ------------FGIDDIQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNP 585 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553 ++L +IK+EL+ + + +PRRT+I + + ED I EDMV+TV+H Y+KR+P+ Sbjct: 586 EKMLEVIKEELMQIAERYASPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPV 645 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + YRAQ+RGGKG G+ ++D DFV DLF+ STH VLFF++ G VY+ KV LP+GS + Sbjct: 646 ATYRAQKRGGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTS 705 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG AL+N+L L + E T ++ + +N Y+VFATK G V++ ++++ + R G Sbjct: 706 RGSALVNVLPLAEDEHPTAVITTRDFP---DNQYLVFATKQGMVKKTAIAEYDKSRRDGL 762 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE+++V + N I+L T G+ + F +R RN+ GV+GISL Sbjct: 763 IAINLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRP-TSRNTSGVKGISLKNNA 821 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++ M I Sbjct: 822 YMLGMEISNGKGD----------------------------------------------- 834 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L ++E G+GKRT ++ + +R G+G+ ++ ++ GALVA V ++ Sbjct: 835 ------LLVITENGYGKRTPISEYSLQHRGGQGVTTIAMT--SKKGALVACRVVGPQHEL 886 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +++S++G +IRV +I + RAT+GV I + + + V ++ R Sbjct: 887 MIMSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVSAMAR 929 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 73/285 (25%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730 + +D+ DE++ + ++++ K RF I I+ R G+ Sbjct: 509 IAVDNIDEVVHIIRSSKDD---AEAKSRMSERFGIDDIQGEAILQMRLRRLTGL------ 559 Query: 731 KGDQVISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D++ + + D K + + + E S + Sbjct: 560 ARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASPRRTKISTNEAQIL 619 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++TV+ + KR +R R GKG++ + + + L F + Sbjct: 620 DVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQGLSLKDNDFVEDL---FVAS 676 Query: 849 DNDQIILVSDKGTLIRVPVNEIRI---ASR------------------------------ 875 +D ++ ++KG + R+ V+E+ + SR Sbjct: 677 THDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDEHPTAVITTRDFPDNQY 736 Query: 876 ---ATK------------------GVVIFSTAKDERVVSVERIRE 899 ATK G++ + + +V+V R+ E Sbjct: 737 LVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCE 781 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 101/269 (37%), Gaps = 17/269 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G VK+ ++ Y RR G + ++D D + ++ V ++ Sbjct: 731 FPDNQYLVFATKQGMVKKTAIAEYDKSRRDG--LIAINLKDGDELVNVRRVCEGNRIILC 788 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 +S G + P +R + + +SL + + E S ++ T Sbjct: 789 TSAGKAIMFSEEDVR---PTSRNTSGVKGISLKNNAYMLGM------EISNGKGDLLVIT 839 Query: 653 KHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 ++G +R +S++ +R G+ IAM +++ ++++++ ++ G +R Sbjct: 840 ENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGA-LVACRVVGPQHELMIMSEEGVMIRV 898 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 I +GR + GV+ ++L+ D V +MA ++ + S + Sbjct: 899 KSMDISS-SGRATQGVKIMNLSSTDHVSAMARMVAKKKSSHAQAADKNQPSLPLAFATTP 957 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797 + D G E L E Sbjct: 958 ASDADPADADEVNIGGEEEFDENLLDDDE 986 >gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] Length = 829 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 357/899 (39%), Positives = 542/899 (60%), Gaps = 86/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + V I+ EM+ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++Y AL R+AQD++LR +++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A ++ D+GK+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +IDNP+ + LM I+GPDFPT +I+G++GI+ AY TGRG I +R Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+K+ A++++ILNQLY++T LQ F +NM+AL +PE L IL+ ++ F+E+V+ R Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA RAH+L GL IA+ ++DEV+ +IR S + A+ LM + Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL+L+L RLTGL R+ I +E N L I E IL Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +++L II+ EL +K + R+T I D++ ED I E++V+T++H GY+KR+ Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +Q+RGG+G + +++DFV ++FI STH ++LFF++ G +YK K +++P Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L L+ E+I ++ E + ++V TK G +++ + + I +S Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFD---EESFLVMCTKKGIIKKTVVGMYKNIRKS 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE++SV ++DI++ T G +RF +R GRN++GV+GI+L + Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M + Sbjct: 693 DDFVVGMEVPNQESDVLVVSENGFGKR--------------------------------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 T +++ +R GKG+ VS ++ G LV V V D D Sbjct: 720 --------------------THVGEYKCQHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++L+++ IR+ V++I SR GV + DE+V+++ +I + + +S E Sbjct: 758 ELMLINNL-HSIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEE 815 >gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.] Length = 848 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 360/902 (39%), Positives = 554/902 (61%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + + ++I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ Y Sbjct: 3 DGEKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ ++YD++ RMAQ+WS+R ++++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK + +L D+ KDTVD R N+D + QEP VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G +A I+N +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E+ RE I+VTEIPYQVNKA M++K AELV +K+I I+++RDESDR G R+V Sbjct: 243 AKAIVEEVK-GRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA RAH+L GL IA N+DEV+ IR S N + AR +L+ R Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E +++ + I + DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R IIK+EL +KD+ RR+ I DM ED I +VVT+S+ GY+KR Sbjct: 456 ANEPRRYDIIKEELAHIKDKYGDERRSIIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 NTKGRAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L G+ +RF + R GR + GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+VI M V +++ Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKGFGKR+ D+R++NR GKG++ ++S+ + G LVA+ V+ Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISE--KTGNLVAIKNVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D++ +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ E V+E Sbjct: 761 DSNDLMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEEDLE 820 Query: 909 TE 910 E Sbjct: 821 GE 822 Score = 67.5 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 13/253 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + V+ + G VK+ L Y R G + + +++ D + + + + + V+ Sbjct: 606 EEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDELLEAKLTTGDSQVM 663 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + P R + + ++L M D S ++ Sbjct: 664 LALASGKSIR---FEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMESN----ILV 716 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVR 707 ++ G +R+KL D+ G + + + L + ND+++ K G +R Sbjct: 717 VSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLTIR 776 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + +RV GR + GVR I++ D + ++A V H + ++ + + Sbjct: 777 MAVEDLRVM-GRATQGVRLINIKDSDSIAAVAKVAHEEDVEEDLEGETEAGIEIENDSNE 835 Query: 768 DTEEITSLKNDSS 780 + ++ Sbjct: 836 NDSNENDSSENNE 848 >gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] Length = 842 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 359/906 (39%), Positives = 551/906 (60%), Gaps = 89/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ ++++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIQNKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD-- 904 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ D Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEEDII 821 Query: 905 -EAEST 909 E + T Sbjct: 822 AEEDDT 827 >gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735] gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735] Length = 867 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 371/907 (40%), Positives = 543/907 (59%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG+A++Y AL RM QDW++R L++GQGNFGS+DGD PA Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G G++ AY TGRG Sbjct: 183 ATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQ Sbjct: 243 RIVMRAKAEIESDES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTKY L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL D + E L +I Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VKD+ RRT I + ED + +V+TVSH+G Sbjct: 456 FQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS + Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L++ + I I+ DE N+ YV+FATK+G V++ L Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V N++++ + G+ VRF + IR GR + GV Sbjct: 636 YSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGV 694 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L G D+V+ M V A+ Sbjct: 695 RGMRLDGGDDEVVGMVTVNEAET------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV+ Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D + +++++ G +IR+ V ++R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDENDLMIINKSGIVIRLVVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EATVEEE 828 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 104/267 (38%), Gaps = 15/267 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + V+ + G VK+ L Y R G + DE L + ++ Sbjct: 611 EIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRL--TNGRNELI 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + A G + + L+ G+ M + V+ Sbjct: 669 MANRNGRAVRFNENTIRTMGRTATG---VRGMRLDGGDDEVVGMVTVNEA---ETETVMV 722 Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ G +R+++ D+ NR +A+ + ++S++ T END+++ K G + Sbjct: 723 VSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTG-RLVSIKNVTDENDLMIINKSGIVI 781 Query: 707 RFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 R ++ +RV GR + GVR I+L K D + S+ V+ ++ + + + I Sbjct: 782 RLVVADVRVM-GRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWANKSEEI 840 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQE 792 DT+ S + + ++ +E Sbjct: 841 KKDTQAEASESAEDEPLVDFEDDNKEE 867 >gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] Length = 834 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 361/910 (39%), Positives = 546/910 (60%), Gaps = 90/910 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM Sbjct: 1 MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV Sbjct: 55 NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++ K A +L D+ KDTVDF NYDG+ +EP VL AR+PN+LVNG Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV++G ++++PDI + LM+ I GPDFPTG V++G++GI+ A Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG+I++R IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R+ I +E L Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539 I + DIL+ R R+ II EL+ ++ RRT + + ++EDED I ED++ Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V ++H GY+KR+P+ +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K + +P A+G +IN+L +N E+I+ ++ + + ++ Y+ F TK G V+R Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +++F I +G A+ L DE++ VE +++ +++ T G + F S +R GR Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRGI L D VI A + Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +L +SE GFGK+TS+ ++ I R G G++ +V+ N G Sbjct: 710 ----------------SDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--G 751 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV + VN ++ I+LV+D+G +IR + + R+ GV + RV ++ ++ + Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKVDK 811 Query: 900 SEIVDEAEST 909 + E+T Sbjct: 812 EVDEETEEAT 821 >gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae] Length = 822 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 367/900 (40%), Positives = 554/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGM TNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVWSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR V I R+T GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817 >gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833] gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833] Length = 834 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 348/917 (37%), Positives = 518/917 (56%), Gaps = 92/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTEVNTPPGPP-ADRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++ Y K +RI G+VMG YHPHG+A+IYD + R+AQ WSLR L++GQGNFGS Sbjct: 60 FEGGYRPDRGYFKSSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE R+ A +L D+ KDTVDF+PNYDG +EPVVL +R+PN+LVNG Sbjct: 120 GNDPAAAMRYTESRMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E + +++P++ + L+ E I+GPDFPTGA+I+GR G Sbjct: 180 GIAVGMATNIPPHNLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIVGRRG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSI++R V +E+ + R+ +VVTE+PY VN + IAELVRE +I I Sbjct: 240 IEEAYRTGRGSIIMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A V+LN LY++T LQ+ F NM+AL P L Sbjct: 300 ADVRDESSSRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ ++ + +VVVRRT++LL KA +RAH+L GL A+ +DEV+ +IR SP+ A+ Sbjct: 360 QFVRHYIRHQIDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQT 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + EVQ +AIL+++L +L L R I++ Sbjct: 420 GLMA--------------------------LLEIDEVQAQAILDMQLRKLAALERQQIQD 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + L +I + DIL S R ++ +EL + + RRT+I DM +ED I Sbjct: 454 EYDGLMAQIADYNDILGSEMRQRRLVSEELGEIIAKYGDERRTKITAYEGDMSEEDLIAE 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR + YRAQRRGGKG G +R +D V F+ STH +L F++ Sbjct: 514 EDVVVTITRGGYAKRTSIDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ L N+L++ E + I+ + Y+V AT+ G Sbjct: 574 GRVYRFKAYELPEAARDARGQHLANLLAMQPDEHVMEILSLRNYD---EAPYLVLATRSG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ +L+++ G IA+ L DE+++ ++E+D+LL +K Q +RF + + Sbjct: 631 MVKKTRLAEYDSPRSGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ A+GD++++M ++ D Sbjct: 691 RPM-GRATAGVIGMRFAEGDELLAMEVIRDGD---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +L +E G+ KRT + + + R GKG+ + Sbjct: 722 ------------------------EEVLVATEGGYAKRTPADQYPVQGRGGKGVLTAKIV 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V D++ ++ G +IR EI+ + R T GV + ++ + +V+ Sbjct: 758 Q--SRGKLIGAIMVRPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGDSLVA 815 Query: 894 VERIRESEIVDEAESTE 910 + R ES +E + + Sbjct: 816 LARNAESLNNEENGAGD 832 >gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 812 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 352/892 (39%), Positives = 528/892 (59%), Gaps = 83/892 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 VSI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++G + + K AR Sbjct: 3 QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG++A+YDAL RMAQD+S+R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 63 VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A L D+ K+TVDFRPNYD + EP VL + PN+L+NG GIAVGMATNIP HNLG Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ + ++D P ++ LM+ ++GPDFPT + G+ +AY TGRG++ +RG I Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEI 242 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ + IV+ EIP+ +NK++++EKIA LV E++I +ADLRDESDR+G RVVI+LKR Sbjct: 243 EERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKR 302 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G D+++N LY+YT L+S F +NM+A+ G +P+ L L+ F+ R EV++RRT+Y Sbjct: 303 GTIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYD 362 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LM Sbjct: 363 LRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALM------------------ 404 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 G LSE Q +AIL++RL RLT L + + E N L +I+ +L + Sbjct: 405 --------GRFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEV 456 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +I++E+ ++D T RRT ++E ++ ED I ED+V+T+S GY+KR L Sbjct: 457 LRSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDN 516 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ QRRGGKG +GV ++DFV D + H +L F++ G +++ KV R+P GS A+G Sbjct: 517 YQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKG 576 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N++ L++ E +T ++ E + Y +F T+ G V+R+ S + + ++G IA Sbjct: 577 VHIANLVQLDKDELVTNVLTVREFA---EDRYFLFVTRRGMVKRSSASLYAKCRKTGLIA 633 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V + I+LTT G +RF +R GR++ GV+GI+L D+V Sbjct: 634 VGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPM-GRSATGVKGIALRGKDRV 692 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ I+ D Sbjct: 693 VACVILAEEDTTS----------------------------------------------- 705 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I++VS GFGKRT + +R+ +R G G++ V+ + G ++ PV D+D ++L Sbjct: 706 ---MIMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTP--KTGDVIGAMPVRDDDALVL 760 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ ++R+ +N++R RAT+GV + + VV +RI E E+VD E Sbjct: 761 LTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDEREVVDGEE 812 >gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] Length = 821 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 375/903 (41%), Positives = 530/903 (58%), Gaps = 87/903 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE++ + V + EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N Sbjct: 2 DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG++++YDA R+AQD+S R L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF PNYDGS QEP VL A+ PN+LVNG GIAVGMAT Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+DG V +ID+PD+ LD LM I+GPDFPTGA ILGR GI AY+TGRGS+ Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE S + +IV+TEIPYQVNKA ++E IA+L R K I I LRDESDR+G Sbjct: 242 KMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+ + D+ILN+LY++T LQ F V M+AL P TL +L ++ R+ V Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L+KA RAH+L GL IA+ ++DEV++ IR S E A+ LM + Sbjct: 362 VTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q+ AIL++RL RLTGL RD I+ E L I Sbjct: 414 ------------------FDLSEKQSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +L+GII+ ELL K + RRT+I ++ ED I E MV+T++ GY+ Sbjct: 456 SVLADEHKLMGIIRDELLETKKKYADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +VY Q +GG+G G+ +DED V L S H +VLFF++ G VY+ K + +P Sbjct: 516 KRINANVYHTQNKGGRGIKGMATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPE 575 Query: 609 GS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + ++G A IN+L L+QGE++ ++ + + N + AT+ G V++ L +F Sbjct: 576 ANSRNSKGIAAINLLPLSQGEKVNALIDVDQVDPQAN---LFMATERGLVKKTSLQEFSN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + R+G IA+ L D + V + +I+L TK G + F + +R GRN+ GVRGI Sbjct: 633 VRRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPM-GRNTRGVRGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +LA+ D VI I+ Sbjct: 692 TLAEDDMVIGADILADD------------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTVSE+GFGKR + +++ R GKG++ ++ + G +V V V Sbjct: 709 ----------SQVLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITP--KTGVIVGVEVV 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + ++IL++ G +IR + I + R T GV I ++++V +++ I + Sbjct: 757 RNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTISVEGSDEPV 816 Query: 907 EST 909 + T Sbjct: 817 QDT 819 >gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] Length = 846 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 360/886 (40%), Positives = 528/886 (59%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + + V I +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + Sbjct: 2 NFDGQKLIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A G V+G+YHPHG+A++YDAL RMAQ +SLR L++G GNFGS+DGD PAA R Sbjct: 62 AYRKSATTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + + +L D+ K+TVDF+PN+D +EP+V+ +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +IDNPD L+ L I+GPDFPTG +I+GR GI+ AY GR I Sbjct: 182 IPPHNLGEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIMGRAGIREAYVKGRSRIT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ R +I+VTEIPY V+KA ++E IAEL +EKRI I+DLRDESDR+G R Sbjct: 242 LRAKATIEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ELKR A+ V+LN+LY Y+ LQ V M+AL P L IL ++ F+E+VV Sbjct: 302 IVVELKRDANPQVVLNRLYTYSQLQETVPVIMLALVNGHPRVLPLRDILTEYIHFQEQVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +RAH+L GL IA+ +DEV+RI+R S + + LM+R Sbjct: 362 TRRTQYDLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L ++Q +AI+++RL +LT L R+ I EL +L +I Sbjct: 413 -----------------FELDDIQAQAIVQMRLGQLTNLEREKIEEELAALETKIANFKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R+L I+K+E L VK + RRTRI +++ ED I ED+V+T+++ GY+K Sbjct: 456 ILADEQRILQIVKEEALEVKAKFGDERRTRIENVSGEVDVEDLIPVEDVVLTLTNFGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + Y +QRRGG+G +G+ R+ED +LF+ STH VLFF+S G Y+ K + +P G Sbjct: 516 RLPAAAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEG 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G + NIL + Q E IT ++ P+ E + Y+V TK G V+R L ++ Sbjct: 576 SRTSKGMNVANILPVAQDENITAMIKVPKFE---EDCYLVMVTKKGIVKRTSLKEYDTAR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G I + L+ DE++ V IL+ T+ G +RF + R GR + GV+ ISL Sbjct: 633 KAGVIGILLEEDDELVGVLLTDGSAHILVGTRNGVAIRFVETDARPM-GRAAHGVKAISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD V+ + + A + Sbjct: 692 EGGDYVVGVTVPNGAGS------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L ++E G+GKR DFR+ NR GKG+ + ++++ + G + + V + Sbjct: 709 ----------LLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINE--KTGPVAGLRVVEE 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +D + +S G +IRVPV EI + SR +GV + ++ +VV+V Sbjct: 757 SDDALFISSDGVVIRVPVAEIPVYSRYAQGVRVMRVGEETKVVTVT 802 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 16/253 (6%) Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED + + + G VKR L Y R+ G G+++ ++D + + + +L + Sbjct: 606 EEDCYLVMVTKKGIVKRTSLKEYDTARKAG--VIGILLEEDDELVGVLLTDGSAHILVGT 663 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + +SL G+ ++ T+ Sbjct: 664 RNGVAIRFVETD---ARPMGRAAHGVKAISLEGGDY------VVGVTVPNGAGSLLLITE 714 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPI 710 +G +R DF NR GK + ++ V + +D L + G +R P+ Sbjct: 715 NGYGKRVPFEDFRVQNRGGKGLTSYNINEKTGPVAGLRVVEESDDALFISSDGVVIRVPV 774 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + I R + GVR + + + +V+++ H + +E + + ++E Sbjct: 775 AEI-PVYSRYAQGVRVMRVGEETKVVTVTSAAHEEESEEESETSPEDAEQPETETAENSE 833 Query: 771 EITSLKNDSSVEG 783 + D+ + Sbjct: 834 KPDGGSTDNKPQS 846 >gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 549/900 (61%), Gaps = 85/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V N Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + +++++D G +IR + I RAT GV + +D ++V+ + +E + E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 >gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6] gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6] Length = 797 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 351/881 (39%), Positives = 524/881 (59%), Gaps = 88/881 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 V+IT+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+ ++ Y K AR Sbjct: 4 VQVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSAR 63 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+VMGKYHPHG+AAIY+ + RMAQ +S+R LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 64 VVGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLS 123 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A +L D+ K+TVDF PNYDGS +EP VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 124 KIAEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLN 183 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ + +IDNP + LM + GPDFPTG I+GR GI++AY TG+GSI+++ S I Sbjct: 184 ELAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSEI 243 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ +I+ +E+PYQVNKA ++E +AE+V+ R+ I+DLRDESD++G R+V+++K Sbjct: 244 EE-GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT 302 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G +A+V+LNQL+++T+LQ+ + +N + L P +L L+ ++ +R VV RRT++ Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRTRFE 362 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L+ A RAH+L GL IA+ N+DEV+RII+ +P P AR L++ Sbjct: 363 LDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIE----------------- 405 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q +AIL++RL RLTGL ++ I +E L I ILSS Sbjct: 406 ---------AFLLSEEQAKAILDMRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLE 456 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L IIK EL + + RRT+I+E ++ +ED I E++ VT++ GY+KR P++ Y Sbjct: 457 ILSIIKDELTELISKYGDERRTQIIEADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGG+G G + E+FVTD+ ST +LFF+ G + KV+ +P ARGK Sbjct: 517 RMQRRGGRGVIGAETKTEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGK 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +++N+L L ERI +P Y+V T+ GN+ + L F + G A+ Sbjct: 577 SIVNLLQLEPDERIAGAIPVKSF----QAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAV 632 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D ++S + E ++L+ TK G+ +RF +R + R ++GV+ ISL GD++I Sbjct: 633 NLK-GDSLVSAKLTNGEKELLVATKFGKAIRFKEGDVRA-SNRGTMGVKAISLNMGDELI 690 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM ++ Sbjct: 691 SMDVIEPG---------------------------------------------------S 699 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +LTV+ +G+GKRT ++ R GKG++ D K G + V++ D++++ Sbjct: 700 GSTLLTVTNQGYGKRTELEEYPQQRRGGKGVKNIDARK----GYVCCTTTVSEEDELLVT 755 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + G +IR+P ++IR+ R+T+GV I + + V ++ RI Sbjct: 756 TRDGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARI 796 Score = 83.7 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 13/215 (6%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADA 746 +E + T G R P++ R R GV G + V +S A Sbjct: 492 LIQEEEVAVTITSSGYIKRQPVNTYR-MQRRGGRGVIGAETKTEEFVTDVSTASTKDYLL 550 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + ++ + + + + + +I+ V+ Sbjct: 551 FFTDKGKAHWLKVYEVPALGRAARGKSIVNLLQLEPDERIAGAIPVKSFQAGYIVLVTRS 610 Query: 807 GFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G + F GI+A ++ + +LV+ N ++++ + G IR Sbjct: 611 GNIVKMPLQAFSNPRKG----GIKAVNL----KGDSLVSAKLTNGEKELLVATKFGKAIR 662 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++R ++R T GV S + ++S++ I Sbjct: 663 FKEGDVRASNRGTMGVKAISLNMGDELISMDVIEP 697 >gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301] gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9301] Length = 865 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 349/919 (37%), Positives = 541/919 (58%), Gaps = 69/919 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S + E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I+NP I+ L EII+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ + TGRGSI +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK+ Sbjct: 241 IRETFKTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + + Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L LS +Q AIL+++L RLT L D Sbjct: 421 AREKL--------------------------QNDHKLSSIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I+ E N L +I IL+S+ R+ II +EL + + +PR+T I++ ++D D Sbjct: 455 IKGEHNDLTQKINLYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P++ + + RG +G++G +++D V + H ++L F Sbjct: 515 IANERSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+I+ ++ Y++ T Sbjct: 575 SDKGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSIVAVDSFV---DDSYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ +K G + F I Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDI 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L +GD ++SM ++ AD +I Y K Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLADQLAKIEYPK-------------- 736 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ +E ++L S G GKR FR+ R+G G+RA Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV++ + + ++++LV++KG ++R ++I SRA GV + + Sbjct: 784 KF--RIKYDQLVSLKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLDDGDH 841 Query: 891 VVSVERIRESEIVDEAEST 909 + V + +I +E + + Sbjct: 842 LSEVVLVPREQIEEEDQPS 860 >gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] Length = 821 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 376/903 (41%), Positives = 539/903 (59%), Gaps = 84/903 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILASEARQRQIIKDELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E N+ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHENVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV T DIL+ TKLG +R +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ ++ Sbjct: 691 RGIKLKTGDVVVGAGVLESDES-------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+G+GKR + + + R G G + ++ ++ G +VAV Sbjct: 713 ------------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818 Query: 904 DEA 906 E Sbjct: 819 SED 821 >gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1] gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1] Length = 826 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 358/906 (39%), Positives = 543/906 (59%), Gaps = 86/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRT++ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ ++ Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +N N+ +++++ G +IR + ++ R+T GV + +V S+ + E D Sbjct: 756 TIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTEEEQD 815 Query: 905 EAESTE 910 + + Sbjct: 816 QTGDDD 821 >gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] Length = 820 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 372/900 (41%), Positives = 555/900 (61%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE+GI V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM +G Y Sbjct: 2 EERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ DL +DT+DF PNYDG QEP VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGEV+D +AV NPDI + LM I+GPDFPTG ILG++ IK AY TG G IV+ Sbjct: 182 PHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYILGKSAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G+++ I+VTE+PY VNKA M+EK+++LVR+K+I I ++RDES+R G RV Sbjct: 242 RAKTEIEE-KGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ TSLQ+ F N +AL +P+ L ++ ++ +EEV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMISLYLEHQEEVIR 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA DRAH+L GL A+ +D ++ +IR S + + LM+ Sbjct: 361 RRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEE---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +S+ Q +AI E++L RL GL R I ++LN L I + DI Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R RLL II EL +KD+ RRT I++G D+EDED I ED+++++++ GY+KR Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y++Q RGG+G G+ ++D V+ L +STH +LFF++ G VY+ K + +P Sbjct: 515 MPVDTYKSQNRGGRGIKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L L++ E I +++ + N N Y+ F TK G V+R +++F I Sbjct: 575 RSAKGLPVVNLLDLDKEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++ V+ + + IL+ G+ VRF S +R GR S GV+GI++ Sbjct: 635 QSGKIAICLKDNDQLVQVKLTSGNDQILIAASNGKLVRFEESNVRPM-GRISSGVKGINV 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G +V+ M Sbjct: 694 -DGSEVVGMT-------------------------------------------------- 702 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + ++IL V+E+G+GK + ++R+SNR GKG++ ++ N G +VA+ VN Sbjct: 703 ---TDKEGKYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERN--GKIVALRAVNG 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++ +++++D G +IR+P+ ++ A RAT+GV + ++ +V SVE + ++ D+ + Sbjct: 758 DEDLLIITDDGIMIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVEKAVEQDDVDDE 817 >gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908] gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908] Length = 905 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 387/923 (41%), Positives = 543/923 (58%), Gaps = 86/923 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+NPD+ ++ LME I GPDFPT +I GR GI +AY TGRG V+R Sbjct: 186 NLNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGIINGRKGIIDAYHTGRGRAVMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+V+E Sbjct: 246 AEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +QS F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ W +++ +++ Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHL Sbjct: 486 ALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K L+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++NIL L++GERIT I+ Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAIL------------------------------- 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V ++ I++ T G + ++ ++ + G+ Sbjct: 635 --------------------PVREYAEDKYIIMATSHGTVKKTALT---AYSNPRANGII 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L GDQ+I + I ++ ++ S E + + Sbjct: 672 AVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLDPETGEEMIALR 731 Query: 786 SEERCQE-----------------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + R + E ILTV+E GFGKRT ++ +R KG+ Sbjct: 732 AMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGFGKRTDLAEYPAKSRGTKGVV 791 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I TA+D Sbjct: 792 SIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED 849 Query: 889 ERVVSVERIRE-----SEIVDEA 906 E+VV ++RI E E+ +E Sbjct: 850 EKVVGLQRIDEIQEPAPELDEEG 872 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 61/435 (14%), Positives = 145/435 (33%), Gaps = 26/435 (5%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435 L + + ++ L + + ++ +I +R+ ++ D+ ++ + Sbjct: 474 LKEYEELLEIIAALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLI 533 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + + + ++ Q + + G +++E + + D + S Sbjct: 534 NEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGY 547 + ++ + T R IV L E E ED + + + G Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYAEDKYIIMATSHGT 653 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK--VWR 605 VK+ L+ Y R G V ++D D + + I ++ FS+ G V + Sbjct: 654 VKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARN 711 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656 G + + +++L R T + ++ T++G Sbjct: 712 SETGEVKLDPETGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGF 771 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+++ +R K + + + + + ++I+L + G VR P + + Sbjct: 772 GKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGV 831 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ ++V+ + + E + + + Sbjct: 832 SSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQEPAPELDEEGNPIIPAVADEAVEATPEG 890 Query: 774 SLKNDSSVEGNISEE 788 N E Sbjct: 891 EAPNADDAPEAEPAE 905 >gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 811 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 361/887 (40%), Positives = 527/887 (59%), Gaps = 84/887 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I DE++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ K AR+ Sbjct: 4 QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YDAL RMAQD+S+R L+ GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A + D+ K+TV+FRPNYD + QEP VL + PN+L+NG GIAVGMATNIP HNLGE Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 +VDG + +D+P+ + L +++GPDFPTG G+++AY TGRG++ IRG +E Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVE 243 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + + IV+ EIPY +NK++++EKIA L E+RI I DLRDESDR+G RVVI+LKRG Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKRG 303 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ++++NQLY+YT L++ F +NM+A+ G +P+ TL + + F+ R EV++RRT Y L Sbjct: 304 TIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHYDL 363 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL IA+ N+DEVV +IR S P A+ LMQR Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQR----------------- 406 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSEVQ +AIL++RL RLT L + + E L +I+ IL + L Sbjct: 407 ---------FSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVL 457 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G+I+ EL +K+ TPRRT ++E ++ ED I ED+V+T+S GY+KR PL Y Sbjct: 458 RGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVVITLSRRGYIKRTPLDSY 517 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + QRRGGKG +GV D DFV D + + H +L F++ G +++ KV ++P GS A+G Sbjct: 518 QQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGM 577 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L + + E + T + E Y +F+T+ G V+R+ S + + R+G IA+ Sbjct: 578 HINNLLPMEENEWVNTALTIREFT---EEKYFLFSTRKGMVKRSSASLYAKARRTGLIAV 634 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V +++LTT+ G +RF +R GR++ GV+GI+L++ D V+ Sbjct: 635 GLREGDELIMVREVDDNCEVVLTTEKGIAIRFGCGDVRPM-GRSATGVKGIALSQDDSVV 693 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + V Sbjct: 694 ACVTVQGGL--------------------------------------------------- 702 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E I+TVS G+GKRT +R+ +R GKG+ V+ + G ++ V NDQ+IL+ Sbjct: 703 ESEIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTP--KTGEVLGAMTVVSNDQLILL 760 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +IR+ V E+R RAT+GV + + + VV +R+ E E Sbjct: 761 TSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDRVSEQEQE 807 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 66/393 (16%), Positives = 138/393 (35%), Gaps = 29/393 (7%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+ + R+ + + N + + +IR + +E ++D ++ Sbjct: 431 EKLIEEYRELLKKIEYFKSILENEEVLRGVIR---DELKELKETYATPRRTEMLEDELEG 487 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 ID D + LS L + G I G +++ L + Sbjct: 488 IDIEDLIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGDGDFVQDFLVTTNH 547 Query: 494 RSRLLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDC------------IVREDMVV 540 + LL K + +K RT + ++ + E + Sbjct: 548 QYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTALTIREFTEEKYFL 607 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VKR S+Y RR G V +R+ D + + V + V+ + G + Sbjct: 608 FSTRKGMVKRSSASLYAKARRTG--LIAVGLREGDELIMVREVDDNCEVVLTTEKGIAIR 665 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + A G + ++L+Q + + + S ++ +++G +R Sbjct: 666 FGCGDVRPMGRSATG---VKGIALSQDDSVVACVTVQGGLESE----IMTVSRYGYGKRT 718 Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + + +R GK + E+L T + ++L T + +R + +R Sbjct: 719 LIDRYRVQSRGGKGVINFKVTPKTGEVLGAMTVVSNDQLILLTSTNKIIRIGVKEVRSV- 777 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 GR + GVR + L +GD V+ V + + + Sbjct: 778 GRATQGVRLVWLDEGDHVVGFDRVSEQEQEQLD 810 >gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319] gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319] Length = 862 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 361/908 (39%), Positives = 551/908 (60%), Gaps = 86/908 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RR ++ L KA++RAH+L L A N+DEVV IIR S P A+R L +R Sbjct: 362 DVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 E+Q++AI+++RL++LTGL D + E L IK+ Sbjct: 416 --------------------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL++ R ++K+EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+LSL+ G+ + + +D+ ++ YVVFATK G V++ L Sbjct: 576 PEGDKNSKGRAIQNMLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V N++++ + G+ RF S IR GR S GV Sbjct: 636 YSRPRTNGVIAININDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L + D+VI M +V Sbjct: 695 RGMRLDEDGQDEVIGMIVVNDPV------------------------------------- 717 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LV Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 A+ V D++ +++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ SE Sbjct: 762 AIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDIIASVCKVMSSE 821 Query: 902 IVDEAEST 909 + + E Sbjct: 822 MESQVEDD 829 >gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] Length = 895 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 388/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S+ Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V + E I + T G + + FA + G+ Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I D + D + + T+ Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 106/269 (39%), Gaps = 15/269 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E + + G VK+ L + R G V +RD+D + + I ++ ++ F Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G V + ++ A + + + L + +++ +++ N ++ T Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +L+++ R+ + + + D + + +++++ T G VR Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 ++ + GRN+ GV I A+ + V+ + + + + +A Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETVN 866 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798 E T + S + + + + + + + Sbjct: 867 AEGTVVSESSEEQASDASDSESDSEQDTE 895 >gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl] gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl] gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl] gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl] Length = 822 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 364/890 (40%), Positives = 530/890 (59%), Gaps = 89/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+IT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM MG N+ Y K A Sbjct: 6 VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GK HPHG++A+YDALARMAQ WS+R LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL ++ KDTVDFR N+DGS++EPVVL A PN+L+NG GIAVGMATNIP HNL Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ D +I++P+ ++ LM+II GPDFPT +ILG GI AY+TGRG I +R +H Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ IVVTE+PYQVNKA + E+IAELV++++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F +NM+AL + +P TL +L+ ++ R+EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR+RAH+L GL IA+ NLD V++ IR S E+AR LM Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMS-------------- 411 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E Q +AIL+L+L RL L R I +E + I E DIL++ Sbjct: 412 ------------NFSLTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +I+Q+L +K++ PRRTRI+ ++ DED I +++T++ GY+KR Sbjct: 460 PRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR QRRGG+G G++ R++D V L ++ ++LFF+ G VY+ K +P S Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE++T+++ E + Y+V AT G ++R +L ++ Q+ +G Sbjct: 580 AKGLPLVNLISLEPGEQVTSMLAVREF----DAEYLVMATVRGKIKRTQLREYSQVRSNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ D + V DILLTT GQ +RF S +R GR + GV GI+LA G Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLADG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + Sbjct: 695 DRVVSM-----------------------------------------------------D 701 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L + +L V+ +G GKRT+ ++ + R+ G+ + N++ + A V ++ Sbjct: 702 LAEEGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKL--RNDLDEVAAAAVVREHSL 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + ++ G ++R +EI RAT+GV I + A +RV ++ E Sbjct: 760 LTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAALSVEDPEEN 809 Score = 81.4 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 6/168 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ D K + ++ ++ E+ + + E ++L + Sbjct: 445 EVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVR 504 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++T++++G+ KR +R R G+GI+ + + + L N D ++ +D Sbjct: 505 VMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHL---LTCNSLDNLLFFTD 561 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +G + ++ +E+ +SR KG V + S E+V S+ +RE + Sbjct: 562 RGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAVREFDAE 609 >gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555] gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555] Length = 806 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 358/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +I+NP++ + LM I+GPDFPT +I+G +GIK+AY TGRG I++R Sbjct: 183 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I++ + +IV+TEIPYQVNK+ ++E +A+LV+ KRI I+D+RDESDR G R+V Sbjct: 243 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+A++ LNQLY++T +Q F V M+ L +P+ L +L ++ F+EE++ R Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ +DEV+ +IR S E AR L+ + Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 411 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++S LL +IK EL+ ++D+ RRT I D+ ED I E++V+T++H GY+KR+ Sbjct: 456 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH+ +LFF++ G VYK K + +P Sbjct: 516 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N+L L+ E+I ++ F E ++ Y + ATK G V++ +++ + I ++ Sbjct: 576 TAKGTNLVNLLPLDGDEQIQAVISFKE---IDDDNYFIMATKRGLVKKTEINQYASIRKN 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ T ++++L+ TK G +RF +R GRN+ GV+ I+L K Sbjct: 633 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++M I + + + Sbjct: 692 KDIAVAMDIASNKEDILVVSENGFGKRTP------------------------------- 720 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 V+E + I R GKGI ++ + G +V V D D Sbjct: 721 -----------VTE-----------YTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++ IR+ V++I SR GV + T +++RVV++ +I +E Sbjct: 757 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806 Score = 97.9 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 59/260 (22%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T G ++R + R G AM D + + + + IL T G+ Sbjct: 503 VITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKV 562 Query: 706 VRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 + I AGR + G ++L GD+ I I D Sbjct: 563 YKLKGYEI-PDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDD---------------- 605 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + + + +++G K+T + ++ Sbjct: 606 ---------------------------------DNYFIMATKRGLVKKTEINQYASIRKN 632 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ A ++ L+ V + ++++ + G IR ++R R T GV Sbjct: 633 --GLNAINLRDG---DELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAI 687 Query: 884 STAKDERVVSVERIRESEIV 903 + K + V+++ E + Sbjct: 688 TLRKKDIAVAMDIASNKEDI 707 >gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] Length = 929 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 366/889 (41%), Positives = 525/889 (59%), Gaps = 87/889 (9%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 80 EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL K A LL Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EP L AR+PN+LVNG GIAVGMATNI HN+GE V+ Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +ID+PD +D LM I+ GPDFPTGA+I+G GI+ +Y TGRGSI +R +H+E T R Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVESTKTGR 319 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPY VNK + EKIA LV EKRI I+D+RDES ++G R+VIELK+G V+ Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+YTSLQ+ F N +AL P+R +L +L+ ++ + +VV RRT++ L KA+ R Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G A+ ++DEV+ IIR S A L++R Sbjct: 440 AHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 S QT AILE++L RLTGL RD I EL L I D+L+ ++LG+IK+ Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKE 533 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + + RRT+I D+ ED I EDMVVT++H GYVKR+P+ YRAQ+RGG Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG SGV ++++D + ++FI STH VLFFS+ G VY+ KV LP G+ QARG A++N+L Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLP 653 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 GE+I +++ E + Y++FAT HG V++ ++ + + R G IA+ + D Sbjct: 654 FEDGEKIASVISCREFP---EDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDR 710 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +L V + I++ T G+ + F +R GR++ GVRGI + +V+ M I Sbjct: 711 LLGVRRVKPGDKIIMATTAGKAIMFSEDQVRA-TGRDTSGVRGIGMKADAEVLGMEITNG 769 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + + + Sbjct: 770 SG-----------------------------------------------------ELFVI 776 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E+G+GKRT D+ NR G+G+ ++ GAL A+ V +++++++ T++ Sbjct: 777 TERGYGKRTPVADYPEQNRGGQGVYTIQMTDR--KGALAAMKVVGPQHELLIITEGATVL 834 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAESTE 910 RV EI RAT+GV + S + +RV +V R+ + + D AE E Sbjct: 835 RVKTAEISQTGRATQGVKMMSVDEGDRVTAVARMTAAKKKDGDSAEGEE 883 >gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 369/902 (40%), Positives = 551/902 (61%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G + D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+H ++R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHVLLKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR + I RAT GV + +D ++V +V + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817 Query: 908 ST 909 + Sbjct: 818 TE 819 >gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] Length = 891 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 392/925 (42%), Positives = 557/925 (60%), Gaps = 84/925 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A+I NPD+ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R Sbjct: 186 NLTEVINGCLALIVNPDLTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VI Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RR Sbjct: 306 EIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLAIA+AN+D ++ +IR SP P A+ L RSW ++K +++ Sbjct: 366 TVFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLE 425 Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +++ DG ++SE Q +AIL+LRL +LTGL + I +E +L Sbjct: 426 KAGEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLLDL 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S RL+ +I+ EL+ +K + RRT I D+ ED I E++VVT+S Sbjct: 486 IAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK ++N+L L ERIT Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITA------------------------------- 634 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 IL V ++ I + T G + P++ ++ + + G Sbjct: 635 --------------------ILPVREYEEDKYIFMATAFGTVKKTPLT---AYSRQRASG 671 Query: 724 VRGISLAKGDQVISMAIVLHAD--------------ADYDERICYMKHMSAQRRLISGDT 769 + ++L +GD +I + I + + +E ++ + + R Sbjct: 672 IIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDENGNPEIRFKGVRP 731 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 T+ + + + ILTV+E G+GKRT D+ +R+ +G+ + Sbjct: 732 MGRTATGVRGIKMTDEQRVVSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVS 791 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 VS+ N GA+V V+DND+I+L+S++GTL+R VNE+ R T+GV++ T +E Sbjct: 792 IKVSERN--GAVVGAVQVDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDEE 849 Query: 890 RVVSVERIRESEIVDEA----ESTE 910 +VV ++RI E E+ + E E Sbjct: 850 QVVGLQRIEEIEVTESDLINTEDVE 874 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 87/254 (34%), Gaps = 14/254 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PL+ Y QR G + D D+ ++ F Sbjct: 641 YEEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDI--TDGTNEIMLF 698 Query: 593 SSLGFVYKEKVWRLPIGS--------PQARGKALINILSLNQGERITTIMPFPEDESSWN 644 + G V + K + + + +G ++T Sbjct: 699 TDAGKVVRFKEAEESAVVDENGNPEIRFKGVRPMGRTATGVRGIKMTDEQRVVSLIVPKT 758 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701 + ++ T++G +R +L D+ +R+ + + + + + ++I+L + Sbjct: 759 DGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDNDEIMLISN 818 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G VR ++ + GRN+ GV I +QV+ + + + + I + Sbjct: 819 RGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLINTEDVETVD 877 Query: 762 RRLISGDTEEITSL 775 + + S Sbjct: 878 TVIDEVVDDNPPSE 891 >gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] Length = 878 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 384/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N +I +D LM I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I+ EL+ V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V +++ I + T G + + FA + G+ Sbjct: 636 ---------------------VSEYSEDKFIFMATGDGTVKKTSLDQ---FAKVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D +I + I D + + + T+ Sbjct: 672 AVNLREDDSLIGVDI---TDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGMKLSGE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D D+ ++++D GTL+R V+E+ R T+GV + T+++E VV+++RI Sbjct: 787 QAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRID 839 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%) Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 +L A+ + + + R ++ + + + I + ++L +E Sbjct: 479 ALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDV 538 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ K D+ R GKG AT + + I L N +D I+ S + Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERL---LVANTHDNILCFSTR 595 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 G + V ++ ASR +G V I + ER+ ++ + E Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSED 642 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 59/424 (13%), Positives = 148/424 (34%), Gaps = 38/424 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L++ + + L +A+ + ++ +IR E M ++I I ID Sbjct: 474 LDEYKALLDEIAELMHILASTERLMEVIRD----ELVMVRDMYGDERRTEIGAAIHDIDM 529 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494 D + LS ++ ++ R ++ + E L + ++ Sbjct: 530 EDLITQEDVVVTLS---REGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542 +L + P+ +R G + E + + Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646 Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VK+ L + R G V +R++D + + I + ++ FS G V + Sbjct: 647 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVR 704 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 ++ A + + + L+ +++ +++ N ++ T++G +R Sbjct: 705 FNEEQVRGMGRTA---SGVRGMKLSGEDQVVSLI------VPSNEGDILTVTQNGYGKRT 755 Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 LS++ +R+ + + + ++ ++ ++ T G VR +S + Sbjct: 756 VLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 814 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN+ GV I ++ + V+++ + + + A + +T + + Sbjct: 815 GRNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGEEGEVTEATVTTEATETPQADTDAE 874 Query: 778 DSSV 781 + Sbjct: 875 STEE 878 >gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977] gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977] Length = 804 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 367/888 (41%), Positives = 533/888 (60%), Gaps = 85/888 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M Q G+ +K+ K Sbjct: 2 SQVLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A + GEV+ KYHPHG+ A+YDA+ R+AQ+W+LR LI+GQGNFGS+DGDP AA RYTE Sbjct: 62 SAGVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL A LL D+ KDTVDF N+DG+ +EP VL A +PN+L NG GIAVGMAT+IP H Sbjct: 122 RLSPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+++ A+ID+P+I LD +M+ + GPDFPTG + R G+K AY TG+GS+ +R Sbjct: 182 NLGELINALAAMIDDPEITLDGVMQHLPGPDFPTGGRL-NRVGLKRAYETGKGSLRLRAR 240 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E+ G R+ +VVTEIPYQVNKA+++ +IA LVR K++ DI+ LRDESDRQG R+VIE Sbjct: 241 VRTEE-RGGRKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIE 299 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA+ DV+LNQL++ T+LQ+ F++NM+A+ +P L+ +++A++ R EVVVRRT Sbjct: 300 LKRGANPDVVLNQLFKQTNLQTSFTINMLAIVNGEPRVLPLLAMMRAYLDHRREVVVRRT 359 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA DRAHVL GL IA+ +LDEV+ +IR S + A+ LMQR Sbjct: 360 RFDLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQR------------- 406 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSEVQ +AIL++RL RLTGL R+ ++ E L I IL+ Sbjct: 407 -------------FALSEVQAQAILDMRLQRLTGLEREKLQAEYRELQETIAYLRAILAD 453 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +RL G++K ELL+++++ RRT I E ED I E MV+T++ G++KR PL Sbjct: 454 ETRLWGVVKDELLAIREKFADERRTLITEFAEGFNPEDLIEDEPMVITMTAAGFLKRTPL 513 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG G +DED T +F+ H +LFF++ G VY+EKV+ LP A Sbjct: 514 EDYRAQGRGGMGAKAGRTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTA 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG + + L L +GE I ++ + Y VFAT+ G V++ + D+ +N SG Sbjct: 574 RGTHVKSFLPLEEGEEIKALLSLRSLT---DPGYFVFATRKGVVKKTAIRDYQNLNASGL 630 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L D+++ V +++ T+ G+ +RFP+ +R GR S GVRGI L +GD Sbjct: 631 IAINLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA-TGRASQGVRGIRLKEGD 689 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ +V Sbjct: 690 EVVSLIVVP--------------------------------------------------- 698 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K E +L +S G+GKRT ++ + R G+G+ +++ ++G L A+ V+ ++ + Sbjct: 699 KDWEGDLLAISSHGYGKRTPLEEYPLQGRGGQGVITFKLNE--KVGHLTALLAVDGDEDL 756 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++S G IR V I SR T GV + + A + + S I+ + Sbjct: 757 LVLSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAGDEIASAFVIKPHD 804 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 96/274 (35%), Gaps = 61/274 (22%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693 F ++ + V+ T G ++R L D+ R G A + DE V Sbjct: 487 FNPEDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAGRTKDEDEATRVFVAQMH 546 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDE 750 +D+L T G+ R + + R + G V+ L +G+++ ++ + Sbjct: 547 DDLLFFTNRGRVYREKVFELPEAQ-RTARGTHVKSFLPLEEGEEIKALLSLRSL------ 599 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 + + + KG K Sbjct: 600 --------------------------------------------TDPGYFVFATRKGVVK 615 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 +T+ D+ N + G+ A ++ + LV V Q+++ + G IR P++E+ Sbjct: 616 KTAIRDY--QNLNASGLIAINLVEG---DDLVDVRIAGSGAQVVMATRGGKAIRFPLDEV 670 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 R RA++GV + + VVS+ + + D Sbjct: 671 RATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGD 704 >gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 871 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 357/909 (39%), Positives = 542/909 (59%), Gaps = 86/909 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD A Sbjct: 63 SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNL EV+DGC A IDNP+ID + LM I+ PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE ++IV++EIPY VNKA ++E IA+LV+E R+ I++ DES RQ Sbjct: 243 RIVLRAKAEIESDES-HDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL +P TL +K FV R Sbjct: 302 GMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTK+ L KA++RAH+L GL IA N+DEVV+IIR S P A+R L +R Sbjct: 362 DVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL + + E L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIAR 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VK++ RRT I+ + ED + +V+TVSHLG Sbjct: 456 LQLILDDPEECKRVMKAELEEVKEKFGDERRTEIIPDEHEFNAEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS + Q RGG G G RD+DF ++ + H ++LFF+ G + K + + Sbjct: 516 YIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L+++ + + + D N ++VFATK+G V++ L Sbjct: 576 PEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+ + DE++ V +N +++ + G+ V F + +R GR + GV Sbjct: 636 YSRPRTNGVNAITIAEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTM-GRTATGV 694 Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L GD V+ M +V + + Sbjct: 695 RGMRLDGGDDAVVGMIVVNNPET------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA Sbjct: 718 --------------ETVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNIT--DKTGKLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D++ +++++ G IR+ V R+ RAT+GV + + K++ + SV +++ S+ Sbjct: 762 IKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSDK 821 Query: 903 VDE-AESTE 910 D+ E+ E Sbjct: 822 EDDLNENDE 830 >gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] Length = 878 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 383/893 (42%), Positives = 543/893 (60%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N +I +D LM I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I+ EL+ V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V +++ I + T G + + FA + G+ Sbjct: 636 ---------------------VSEYSEDKFIFMATGDGTVKKTSLDQ---FAKVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D +I + I D + + + T+ Sbjct: 672 AVNLREDDSLIGVDI---TDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGMKLSGE 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D D+ ++++D GTL+R V+E+ R T+GV + T+++E VV+++RI Sbjct: 787 QAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRID 839 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%) Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 +L A+ + + + R ++ + + + I + ++L +E Sbjct: 479 ALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDV 538 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ K D+ R GKG AT + + I L N +D I+ S + Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERL---LVANTHDNILCFSTR 595 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 G + V ++ ASR +G V I + ER+ ++ + E Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSED 642 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 59/424 (13%), Positives = 147/424 (34%), Gaps = 38/424 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L++ + + L +A+ + ++ +IR E M ++I I ID Sbjct: 474 LDEYKALLDEIAELMHILASTERLMEVIRD----ELVMVRDMYGDERRTEIGAAIHDIDM 529 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494 D + LS ++ ++ R ++ + E L + ++ Sbjct: 530 EDLITQEDVVVTLS---REGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542 +L + P+ +R G + E + + Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646 Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VK+ L + R G V +R++D + + I + ++ FS G V + Sbjct: 647 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVR 704 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 ++ A + + + L+ +++ +++ N ++ T++G +R Sbjct: 705 FNEEQVRGMGRTA---SGVRGMKLSGEDQVVSLI------VPSNEGDILTVTQNGYGKRT 755 Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 LS++ +R+ + + + ++ ++ ++ T G VR +S + Sbjct: 756 VLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 814 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN+ GV I ++ + V+++ + + + A + D + + Sbjct: 815 GRNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGEEGEVTEATVTTEATDAPQADTDAE 874 Query: 778 DSSV 781 + Sbjct: 875 STEE 878 >gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] Length = 870 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 383/898 (42%), Positives = 539/898 (60%), Gaps = 69/898 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Sbjct: 3 EFAKEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YDA+ RMAQ +S+R +L +GQGNFGS+DGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + A LL D+ K+TVDF NYDGS EP VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++ CVA+ID+P+I ++ LME + GPDFPT +I G G++ AY TGRG ++I Sbjct: 183 PPHNLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGIINGVEGVREAYRTGRGRVLI 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R SH+E G + E IVVTE+PYQVNKA + EKIAELV+EKRI I++LRDESD+ G R Sbjct: 243 RARSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG A+V+LN LY +T +Q++F +N+VAL +P+ L +L++F+ R EVV Sbjct: 303 LVIELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQPKVLDLRQVLESFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR +PNP A+ L+ RSW + D Sbjct: 363 TRRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSD 422 Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++D S+ D LSE Q +AIL+LRL RLTGL +D I +E L Sbjct: 423 MLDRAGASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I++ LDIL S RL I+ ELL+V ++ RR+ I E ++ ED I ED+VVT Sbjct: 483 DLIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK P++ YRAQRRGG+G++ ++EDFV L + +TH +VL FSS G VY Sbjct: 543 LSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP GS +RGK ++N+L L ERI Sbjct: 603 KVYELPQGSRASRGKPIVNLLPLEADERINA----------------------------- 633 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 IL V ++ + + T G + P++ F+ R S Sbjct: 634 ----------------------ILPVREYDPDHYVFMVTARGTVKKTPLTD---FSRRRS 668 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 G+ + L D ++ +++ + + A R + + V Sbjct: 669 TGIIAVDLRDDDYLVDVSLTD----GQMDVMLVTTAGKAVRFSENDVRPMGRTACGVRGV 724 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 L + E L +E G+GKRT +F + R G+G+ N G L Sbjct: 725 RMESDHRVIALLNVAEGAALLATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRN--GPL 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V V ++D+ +L++ GTL+R PV++I + R T+GV + + ER+V + R+ + Sbjct: 783 VGAARVLEDDEAMLITTGGTLVRTPVDQIPLIGRNTQGVRLIRLDEGERLVELARVEK 840 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 100/244 (40%), Gaps = 16/244 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V V+ G VK+ PL+ + +R G V +RD+D++ D+ + V+ Sbjct: 640 YDPDHYVFMVTARGTVKKTPLTDFSRRRSTG--IIAVDLRDDDYLVDVSLTDGQMDVMLV 697 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G + + A G + + + R+ ++ E + + AT Sbjct: 698 TTAGKAVRFSENDVRPMGRTACG---VRGVRMESDHRVIALLNVAEGAA-------LLAT 747 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + +F R G+ + + + + ++++ +L T G VR P Sbjct: 748 ENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGPLVGAARVLEDDEAMLITTGGTLVRTP 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + I GRN+ GVR I L +G++++ +A V + ++ + + D Sbjct: 808 VDQI-PLIGRNTQGVRLIRLDEGERLVELARVEKLQGEDEDLDDDSDSEDDESTQNTMDN 866 Query: 770 EEIT 773 + Sbjct: 867 GDPE 870 Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 6/153 (3%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 + + + R E + S + + ++L +E ++T+S G+ K Sbjct: 494 SGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVVTLSHAGYVKYQP 553 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 D+R R G+G A + + + L N +D ++ S +G + + V E+ Sbjct: 554 VADYRAQRRGGRGKAAASFKEEDFVDRL---LVANTHDTVLCFSSRGRVYWLKVYELPQG 610 Query: 874 SRATKGVVIFS---TAKDERVVSVERIRESEIV 903 SRA++G I + DER+ ++ +RE + Sbjct: 611 SRASRGKPIVNLLPLEADERINAILPVREYDPD 643 >gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] Length = 849 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 365/904 (40%), Positives = 536/904 (59%), Gaps = 92/904 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 D++ I+ V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ Sbjct: 2 DDDKIFDKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + KCARI G+ MGKYHPHG+++IYDAL ++AQDW+ R L++G GNFGS DGD AA Sbjct: 62 DKPHRKCARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 TNIP HNL EV+ V +IDN + +D +M+II+GPDFP GA ILG GIK AY Sbjct: 182 TNIPPHNLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHRGIKEAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V+ IE + +IVVTE+PY VNKA +++KI ELV+ KR+ I D+RDE Sbjct: 242 TGRGKIKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R+G RVVIELK+ +A+V+LNQLY++T LQ F VNM+AL P+ + +L ++ Sbjct: 302 SSREGIRVVIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDGVPKILNISQMLGYYL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+ L++R Sbjct: 362 KHQEDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER-- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+E+Q +AI+++RL LTGL R+ + E L Sbjct: 420 ------------------------FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMD 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I IL+ +LLG+IK ELL + + RRT + + ++ DE+ I RE++V+T+ Sbjct: 456 KISYLKAILADEKKLLGVIKDELLVISQKYGDERRTALGRDVDEVTDEELIERENIVITM 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LGY+KR+P +++AQ RGGKG G+ DED++ + + +TH ++FF++ G VY+ K Sbjct: 516 TKLGYIKRMPEDIFKAQNRGGKGIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P ARG A++N+L L GE+IT ++P E + Y+ AT++G V++ + Sbjct: 576 GYEIPEAGRTARGVAIVNLLQLQAGEKITAVIPLKSYE---DGKYLFMATRNGMVKKTDI 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S++ + ++G A+ L DE++ V+ E+DI L TK G +RF +R GR S+ Sbjct: 633 SEYQNVRKTGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQ-TGRTSM 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+GI L K D VISM + + Sbjct: 692 GVKGIHLGKDDIVISMQMSSQGEK------------------------------------ 715 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 IL V+E G GKRT +F + NR GKG++ ++ ++ G LV Sbjct: 716 -----------------ILLVTENGMGKRTLISEFNVQNRGGKGVKCYKIT--DKTGDLV 756 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900 V D + I++++ +G +IR I R T GV + + + +V S+ +++ Sbjct: 757 GAKIVTDENDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQKE 816 Query: 901 EIVD 904 E D Sbjct: 817 EFDD 820 >gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] Length = 901 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 362/887 (40%), Positives = 540/887 (60%), Gaps = 87/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A Sbjct: 52 LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++A +L +L K+TVD +PNYD S EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV D +IDNP++ + LM ++ GPDFPTG +I+G GIK+AY TGRGSI +R H Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 291 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ R+++VVTEIPYQVNK + EKIA+ V EK+I I+D+RDES+R+G R+VI+LK Sbjct: 292 VEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 351 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A V+LN LY+ T LQS F + +AL P +L IL+ ++ + +VV RRT++ Sbjct: 352 RDAVPQVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTEF 411 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ R H+L GL AV N+DE+V IIR S + A++ + +R Sbjct: 412 DLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNER--------------- 456 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q AIL++RL RLTGL R D+ +E++ L ++I D+L+ Sbjct: 457 -----------FGLDEIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEE 505 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L +I EL + + RRT+I E + + ED I EDMVVTV+H GYVKRVP+ Sbjct: 506 KILAVIADELREISNRYADKRRTQISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 565 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YR+Q+RGGKG GV +++ DFV +LF+ STH VLFF++LG VY+ KV LP+GS + Sbjct: 566 IYRSQKRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTK 625 Query: 615 GKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G A+IN++ L +GE++ ++ + + Y++FATK G V++ +S++ + + G Sbjct: 626 GSAIINVIETLAEGEKVKAVITTRDFP---EDNYLMFATKQGMVKKTAMSEYDRTRKDGL 682 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE+++V + ++L + G+ + F + R GR + GVRGI+L Sbjct: 683 IAINLKDGDELVNVRRVHPGDKVVLCSSDGKAILFDEAEARSM-GRGTSGVRGITLKGNA 741 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++ M I Sbjct: 742 TMLGMEITNGNGD----------------------------------------------- 754 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + ++EKG+GKRT+ ++ + R G+G+ +++ + G LVA V +I Sbjct: 755 ------LFVITEKGYGKRTAISEYPVHKRGGQGVFTITMTE--KKGNLVACRVVGPQHEI 806 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++S++G +IRV +I R+T+GV + + + + V +V R+ + Sbjct: 807 MIMSEEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVARMVAN 853 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 103/254 (40%), Gaps = 16/254 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ ++ + G VK+ +S Y R+ G + ++D D + ++ V V+ Sbjct: 651 FPEDNYLMFATKQGMVKKTAMSEYDRTRKDG--LIAINLKDGDELVNVRRVHPGDKVVLC 708 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G K ++ RG + + ++L + + E + N + T Sbjct: 709 SSDG---KAILFDEAEARSMGRGTSGVRGITLKGNATMLGM------EITNGNGDLFVIT 759 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R +S++ R G+ + + + +++ +++I++ ++ G +R Sbjct: 760 EKGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVACRVVGPQHEIMIMSEEGVVIRVK 819 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 I GR++ GV+ ++L+ D V+S + A+ + + M + D Sbjct: 820 AGDI-SKLGRSTQGVKVMNLSGSD-VVSAVARMVANKKKAPKHAENQGMLDLMSAGARDA 877 Query: 770 EEITSLKNDSSVEG 783 +E S+ E Sbjct: 878 DEAESVDLGDEEEA 891 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 95/280 (33%), Gaps = 70/280 (25%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLAKGDQVI 736 DEI+ + +Q++ K RF + I+ R G LA+ D V Sbjct: 434 DEIVHIIRSSQDD---AEAKKRMNERFGLDEIQGEAILQMRLRRLTG-----LARQDLVD 485 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKL 795 ++ + A Y++ + + + + A + + K + + + E L Sbjct: 486 EISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYADKRRTQISEQDIQNLDVEDLIA 545 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGK------------------------------ 825 +E ++TV+ G+ KR +R R GK Sbjct: 546 EEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTN 605 Query: 826 --------------GIRATD----------VSKINEIGALVAVFPVNDNDQIILVSDKGT 861 G R T +++ ++ A++ +++ ++ + +G Sbjct: 606 LGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGEKVKAVITTRDFPEDNYLMFATKQGM 665 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + + ++E + G++ + + +V+V R+ + Sbjct: 666 VKKTAMSEYDRTRKD--GLIAINLKDGDELVNVRRVHPGD 703 >gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] Length = 818 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 352/903 (38%), Positives = 543/903 (60%), Gaps = 87/903 (9%) Query: 1 MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M+++ I ++ + G+ + EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M G+ + + K AR G+V+GKYHPHG++A+YD + R+AQD+S+R+ L++G GNFGS Sbjct: 61 MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTE RL K A LL DL K+TVD++PNYD S QEPVVL AR+PN+LVNG Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE +D ++DNPD+ +D LM++I GPDFPTG +I+GR GIK+ Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKD 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGS+ +R I ++ ++ IV+TEIPYQVN+ +++KI ELVR+K++ +I+++ Sbjct: 241 AYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNV 300 Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 D +DR ++I+LK A V+LN+LY++T LQ F V +AL P +L +L Sbjct: 301 HDGADRNSPVDIIIDLKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREML 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + ++ +E+V+VRRT++ L KA +RAH+L GL IA+ N+DEV++IIR S A L Sbjct: 361 RHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQ 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +R LSE QT AILE+RL RLTGL R + +EL Sbjct: 421 ER--------------------------FNLSEAQTAAILEMRLRRLTGLERHKLEDELA 454 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +I ILS S + +IK+ELL +K +TPRRT + D++ ED I E++ Sbjct: 455 ELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDVEDLIADEEV 514 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VTV+ GYVKR+P+S YR Q+RGGKG GV +++ DFV LF+ STH+ +LFFS+ G V Sbjct: 515 AVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKV 574 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ KV+ +P S ARG A++N+L L +GE I ++ + + Y++F T+ G V+ Sbjct: 575 YRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFP---EDEYLMFGTEQGMVK 631 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + ++ + + R G IA+ L D++++V D+++ + G+ +++ +R G Sbjct: 632 KTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSM-G 690 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+++GVRG+++ +V+ + I Sbjct: 691 RDTMGVRGMTVPANTKVLGLEIARPDTD-------------------------------- 718 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L ++E G+GKRT ++ +R G+G+ ++ + Sbjct: 719 ---------------------LLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTA--KK 755 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L A+ V ++D+++++S+ G +IR ++ RAT+GV + + A ++V +V Sbjct: 756 GNLSAMKVVAESDELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAVAIST 815 Query: 899 ESE 901 E + Sbjct: 816 EDD 818 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 70/287 (24%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730 + LD+ DE++ + +Q + RF +S I R G+ L Sbjct: 394 IALDNIDEVIKIIRGSQTD---REASERLQERFNLSEAQTAAILEMRLRRLTGLERHKLE 450 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +A + A Y + + + + + + +++ G + Sbjct: 451 DE-----LAELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDV 505 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L E+ +TV++ G+ KR +R R GKG++ ++ + + + L F + + Sbjct: 506 EDLIADEEVAVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHL---FVASTH 562 Query: 851 DQIILVSDKGTLIRVPVNEIRIAS---RAT------------------------------ 877 ++ S G + R+ V EI AS R T Sbjct: 563 SYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPEDEYLM 622 Query: 878 ----KG-VV----------------IFSTAKDERVVSVERIRESEIV 903 +G V + +D+++++V R++ E V Sbjct: 623 FGTEQGMVKKTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDV 669 >gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT] gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT] Length = 796 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 367/882 (41%), Positives = 538/882 (60%), Gaps = 89/882 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 V +T+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + GV +++ Y K AR Sbjct: 4 IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+VMGKYHPHG+ AIYD + RMAQD+S+R LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 64 IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A +L D+ KDTVDF PNYDGS +EP VL +R PN+LVNG GIAVGMATNIP HNL Sbjct: 124 KIAGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLR 183 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EVV + +I+NPD + LM IRGPDFPTG I+GR+GI++AY+TGRG+I IR S I Sbjct: 184 EVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSEI 243 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ +I+ TE+PYQVNKA ++E IAELV+ R+ I+++RDESDR+G R+V+ELK+ Sbjct: 244 EEGRRG-SRIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELKQ 302 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G + V+LNQL+++T L++ + + + L +P TL L+ ++ +R EV+ RRT++ Sbjct: 303 GVNPQVVLNQLHKHTQLETTYGIINLVLVDGQPRTLTLKETLEQYINYRAEVIERRTRFE 362 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L +A RAH+L G+ IA+ ++DEV+ +IR SP+P AR LM R Sbjct: 363 LEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNR---------------- 406 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q RAIL++RL RLTGL ++ + +E L I IL+SR+ Sbjct: 407 ----------FGLSEEQARAILDMRLQRLTGLEQEKVASEARELESTIARLKGILASRTE 456 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L IIK EL + + RRT I+E + + ED I E++ V +++ GY+KR PLSVY Sbjct: 457 VLDIIKNELRELDEIYGDDRRTEILESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGGKG G + EDFVTD+F ST ++ F+ G + +V+ +P+ S ARG+ Sbjct: 517 RMQRRGGKGSIGAETKSEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGR 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + ++L L + ERIT +P + + Y+V AT++G++ + L F R G A+ Sbjct: 577 PIASLLQLEENERITEAIPVESFGT---DEYIVLATRNGSIVKTPLRAFSNPRRGGIKAV 633 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +++ ++++ TK G+ +RF S +R +GR S+GV+ I+L++GD++I Sbjct: 634 NLR-GDSLVAARLTDGSRELIVATKKGKAIRFHESDVRS-SGRGSMGVKAINLSEGDELI 691 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM +V + Sbjct: 692 SMDVVKEGET-------------------------------------------------- 701 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + T++ +G+GKRT ++ + R GKG++ D G +VA V+D+D +++ Sbjct: 702 ---LFTITTQGYGKRTELSEYPLQRRGGKGVKNIDT----RRGDVVAAITVSDDDGLLIT 754 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + +G +IR+ +++R+ RAT+GV I + + V R+ Sbjct: 755 TKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVARVD 796 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 81/216 (37%), Gaps = 10/216 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHAD 745 E ++ T G R P+S R R G G D V + + + Sbjct: 492 LIQDEEVAVIITNNGYIKRQPLSVYR-MQRRGGKGSIGAETKSEDFVTDIFTASTLDYLM 550 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 D + + + + I+E E +++I+ + Sbjct: 551 IFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESFGTDEYIVLATR 610 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G +T F R GI+A ++ +LVA + + ++I+ + KG IR Sbjct: 611 NGSIVKTPLRAFSNPRRG--GIKAVNL----RGDSLVAARLTDGSRELIVATKKGKAIRF 664 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++R + R + GV + ++ + ++S++ ++E E Sbjct: 665 HESDVRSSGRGSMGVKAINLSEGDELISMDVVKEGE 700 Score = 98.3 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 14/272 (5%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 ++ + V T +G ++R LS + R G I + S D + + T + Sbjct: 486 SVRPEDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDFVTDIFTAST 545 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI----SLAKGDQVISMAIVLHADADY 748 + +++ T G+ + I + + G R I L + +++ V D Sbjct: 546 LDYLMIFTDRGKAHWLRVYEI-PMVSKVARG-RPIASLLQLEENERITEAIPVESFGTDE 603 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 + + L + +K + ++ R + + ++ ++KG Sbjct: 604 YIVLATRNGSIVKTPLRAFSNPRRGGIKAVNLRGDSLVAARLTDGSRE---LIVATKKGK 660 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 R D R S R G++A ++S+ L+++ V + + + ++ +G R ++ Sbjct: 661 AIRFHESDVRSSGRGSMGVKAINLSEG---DELISMDVVKEGETLFTITTQGYGKRTELS 717 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900 E + R KGV T + + V ++ + Sbjct: 718 EYPLQRRGGKGVKNIDTRRGDVVAAITVSDDD 749 Score = 84.8 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 91/237 (38%), Gaps = 15/237 (6%) Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731 I + L DE++++ + + RF +S + R + +R L + Sbjct: 376 ILIALRDIDEVIALIRGSPS---PSDARNLLMNRFGLSEEQA---RAILDMRLQRLTGLE 429 Query: 732 GDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 ++V S A + A + + + + +EI + + ++ R Sbjct: 430 QEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDDRRTEILESVESVRP 489 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L E+ + ++ G+ KR +R+ R GKG + + + +F + Sbjct: 490 EDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDF---VTDIFTASTL 546 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 D +++ +D+G + V EI + S+ +G + ++ER+ + + Sbjct: 547 DYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESFGTDE 603 >gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] Length = 832 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 357/908 (39%), Positives = 541/908 (59%), Gaps = 91/908 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE I V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M ++ + Sbjct: 2 DENIFDRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ WS R +L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ +IDN D D+D +++I++GPDFPTGA ILGR GI+ AY T Sbjct: 182 NIPPHNLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHILGRAGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I++R V+ IE + + +IVVTE+PY VNKA ++E IA++V+ KRI I +LRDES Sbjct: 242 GRGKIIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R G R+ IEL+R + +IL +LY++T LQ+ F NM+ L +P L +L ++ Sbjct: 302 NRNGMRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNEPVVMNLKQMLGFYLE 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E VV RR++Y LNKA +RAH+L GL +A+ +DEV+ IIR S A+ +L+ Sbjct: 362 HQENVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLI----- 416 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 G L +VQ +AI+++RL LTGL R+ ++ E +SL Sbjct: 417 ---------------------GRFSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQER 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IKE +IL +LLG+IK+E+ ++D+ RR++IV D+ ++D I E+ V+ ++ Sbjct: 456 IKELKEILGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 ++GY+KR+ +++Q RGGKG G+ +EDF+ DL + +TH +LFF++ G VY+ K Sbjct: 516 NMGYIKRMTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P S ARG A++N+L L E++ ++ ++++ + Y+ ATK G V++ LS Sbjct: 576 YQIPEASRTARGTAMVNLLQLQPDEQVKAVINIRKEKT---DGYLFMATKRGIVKKTALS 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ I ++G A+ L D+++ V+ ENDI L TK G C+RF +R GR S+G Sbjct: 633 EYANIRKTGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRP-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+++ D++++M Sbjct: 692 VIGMTIDDTDEIVAM--------------------------------------------- 706 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + +L VSE G GKRT +F +R GKG++ + + + G ++ Sbjct: 707 --------QLDTQGAKLLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVE--KTGLVIG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-I 902 VNDN++I+L++ G +IR+ V I R T GV + + D + + ++RE + Sbjct: 757 AKSVNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDDKA 816 Query: 903 VDEAESTE 910 E E+TE Sbjct: 817 AAEEETTE 824 >gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] Length = 826 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 361/906 (39%), Positives = 544/906 (60%), Gaps = 86/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRT++ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DILS R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILSKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRAAKGLPVVNLLQLEKGEKVQTVINIPEGA---DDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GV Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ I+ Sbjct: 691 RGINLREHDYVVGSGIL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +N N+ +++++ G +IR ++++ R+T GV + + D +V S+ + E D Sbjct: 756 TIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQD 815 Query: 905 EAESTE 910 + + Sbjct: 816 QTGDDD 821 >gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] Length = 807 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 358/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +I+NP++ + LM I+GPDFPT +I+G +GIK+AY TGRG I++R Sbjct: 184 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I++ + +IV+TEIPYQVNK+ ++E +A+LV+ KRI I+D+RDESDR G R+V Sbjct: 244 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+A++ LNQLY++T +Q F V M+ L +P+ L +L ++ F+EE++ R Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ +DEV+ +IR S E AR L+ + Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 412 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++S LL +IK EL+ ++D+ RRT I D+ ED I E++V+T++H GY+KR+ Sbjct: 457 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH+ +LFF++ G VYK K + +P Sbjct: 517 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N+L L+ E+I ++ F E ++ Y + ATK G V++ +++ + I ++ Sbjct: 577 TAKGTNLVNLLPLDGDEQIQAVISFKE---IDDDNYFIMATKRGLVKKTEINQYASIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ T ++++L+ TK G +RF +R GRN+ GV+ I+L K Sbjct: 634 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++M I + + + Sbjct: 693 KDIAVAMDIASNKEDILVVSENGFGKRTP------------------------------- 721 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 V+E + I R GKGI ++ + G +V V D D Sbjct: 722 -----------VTE-----------YTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++ IR+ V++I SR GV + T +++RVV++ +I +E Sbjct: 758 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807 Score = 97.6 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 59/260 (22%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T G ++R + R G AM D + + + + IL T G+ Sbjct: 504 VITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKV 563 Query: 706 VRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 + I AGR + G ++L GD+ I I D Sbjct: 564 YKLKGYEI-PDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDD---------------- 606 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + + + +++G K+T + ++ Sbjct: 607 ---------------------------------DNYFIMATKRGLVKKTEINQYASIRKN 633 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ A ++ L+ V + ++++ + G IR ++R R T GV Sbjct: 634 --GLNAINLRDG---DELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAI 688 Query: 884 STAKDERVVSVERIRESEIV 903 + K + V+++ E + Sbjct: 689 TLRKKDIAVAMDIASNKEDI 708 >gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341] gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341] Length = 815 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 374/898 (41%), Positives = 552/898 (61%), Gaps = 85/898 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTG+ +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+IV+TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ + Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E+Q +AIL++RL RLTGL RD I E + L I + D Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K ELL VK++ RR+ I+E + +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + ++F+TK+G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTSLIFSTKYGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V + Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILTV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 N+ +++++D+G +IR+ V+ I R GV + + D++V +V + EI +E Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEEE 815 >gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] Length = 867 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 370/907 (40%), Positives = 545/907 (60%), Gaps = 85/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDNDRILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGS+DGD PA Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNL EV++GC A IDNPDIDLD LM+ I+ PDFPTGA I G G++ AY TGRG Sbjct: 183 ATNMPTHNLSEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQ Sbjct: 243 RIVMRAKAEIESGES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTKY L KA++RAH+L GL IA N+DEVV IIR S P A+R L QR Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL D + E L +I Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VK++ RRT I + ED + +V+TVSH+G Sbjct: 456 LQQILDDPELCKKVMKDELNEVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS +R Q RGG G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFREQARGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L++ + I I+ DES N+ YV+FATK+G V++ L Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V N++++ + G+ VRF + IR GR + GV Sbjct: 636 YSRPRANGVIAINIVDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTM-GRTATGV 694 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L G D+V+ M V A++ Sbjct: 695 RGMRLDGGDDEVVGMVTVNEAES------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV+ Sbjct: 718 --------------ESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902 + V D + +++++ G +IR+ V ++R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 762 IKNVTDENDLMIINKSGVVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 Query: 903 VDEAEST 909 E Sbjct: 822 EATVEEE 828 >gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] Length = 840 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 363/892 (40%), Positives = 554/892 (62%), Gaps = 87/892 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y K ARI GEV+GK Sbjct: 1 MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYTE RL+K ++ Sbjct: 61 YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+PTHNL EV+D C+A Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R + IE + + Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMRAKAEIETHTT-HD 239 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+VI++KR A+A V+L Sbjct: 240 KIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVVL 299 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+RRT+Y L KA++RA Sbjct: 300 NKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQERA 359 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA N+DEV+RIIR + P A L++R Sbjct: 360 HILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER------------------------ 395 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE+Q RAI+E+RL +LTGL +D + E + +I +ILS+ +IK E Sbjct: 396 --FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDE 453 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L+ VK++ RR+ IV + ED + MV+T+SH+GY+KR PLS +RAQ RGG Sbjct: 454 LVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGV 513 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ A+G+A+ N+L++ Sbjct: 514 GSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNI 573 Query: 625 NQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + + +T + D N+ YV+F TK+G +++ L + + ++G A+ + D Sbjct: 574 DSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 633 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAI 740 +++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L + GD+VI M Sbjct: 634 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTLDEDGGDEVIGMIC 692 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + +A + I Sbjct: 693 IKDPEA---------------------------------------------------ESI 701 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V D + +++++ G Sbjct: 702 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSVTDENDLMIINKSG 759 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDEAESTE 910 IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE +T+ Sbjct: 760 ITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTD 811 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 598 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 655 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + G+ + ++ + ++ ++ G Sbjct: 656 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 710 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK L+ D+ +++++ T END+++ K G +R ++ +R Sbjct: 711 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 770 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K DQ+ S+ V + DE + + Sbjct: 771 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 829 Query: 774 SLKNDSSVEGN 784 S + Sbjct: 830 SDLTAEANSEE 840 >gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] Length = 855 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 360/891 (40%), Positives = 544/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I V+I EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM ++G +K Y Sbjct: 3 DQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++Y AL RMAQ+WS+R L++GQGNFGSVDGD AA RYT Sbjct: 63 KKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RLQ ++DDL K+TVD N+D + +EP V+ + PN+LVNG GIAVGMATNIP Sbjct: 123 EARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNLGEV+D CVA IDN DID+D LME ++ PDFPTG I G G++ AY TGRG +V+R Sbjct: 183 THNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIYGMQGVREAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA ++++IA+LV EK+I I++ DESDR+G R+V Sbjct: 243 ARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +++KR A+A+V+LN+L++ T LQ+ FSVN +AL +P +L + FV R +VV+R Sbjct: 302 VDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVKGRPRLLSLKDCISNFVNHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA +RAH+L GL IA N+DEVV IIR + NP+ A LM R Sbjct: 362 RTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L EVQ +AI+E+RL +LT L ++ +RNE + L +I+ IL Sbjct: 411 ---------------FELDEVQAKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S + +IK EL+ VK++ RR+ IV + ED ++MV+T+SH+GY+KR Sbjct: 456 SDEDLCMKVIKDELIEVKEQFGDERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H ++LFF+ G + KV+ +P G+ Sbjct: 516 PLAEFRAQARGGVGSKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + I + D + YVVF TK+G +++ L ++ + Sbjct: 576 NSKGRAIQNMLNIDPDDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + D ++ V EN+I++ + G+ +RF S +R GR + GVRG+++ Sbjct: 636 ANGVNAITIREDDRVIGVRLTNGENEIIIANRNGRAIRFHESKVRAM-GRTATGVRGMTI 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M V Sbjct: 695 DEDGSDEVVGMVCVNDPQT----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R++NR KG++ ++++ + G LVA+ V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITE--KTGKLVAIKVV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQISSVCKV 812 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 53/435 (12%), Positives = 145/435 (33%), Gaps = 27/435 (6%) Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 ++ + + ++ + + +V++ + + +++ + Sbjct: 431 NLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGDERRSEIVYSSEE 490 Query: 427 IKDLIDLIDDSSYTIGSDGTMY----LSE--VQTRAILELRLARLTGLGRDDIRNELNSL 480 DD S L+E Q R + + + Sbjct: 491 FNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGSKGTSTRDTDFVEYIYPATMH 550 Query: 481 GIEIKE-------CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + + + ++ + + + E C Sbjct: 551 NTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDPDDAINVCLRIKNLNDAEFCR 610 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 VV + G +K+ L Y R G + + +R++D V + + + ++ + Sbjct: 611 SH--YVVFCTKNGIIKKTCLQEYSRPRANG--VNAITIREDDRVIGVRLTNGENEIIIAN 666 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + ++ A G + + + + + ++ + ++ ++ Sbjct: 667 RNGRAIRFHESKVRAMGRTATGVRGMT-IDEDGSDEVVGMVCVND----PQTETIMVVSE 721 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R+ + D+ NR K L+ ++++++ T END+++ K G +R + Sbjct: 722 QGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVAIKVVTDENDLMIINKSGITIRLKV 781 Query: 711 SAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R+ GR + GVR I+L K DQ+ S+ V D + + + L Sbjct: 782 ADVRIM-GRATQGVRLINLEKRNDQISSVCKVQTEDEEEETEMLSDGVAPVMDELEGSSD 840 Query: 770 EEITSLKNDSSVEGN 784 ++ +++ + Sbjct: 841 ASVSESRDEETETNE 855 >gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] Length = 854 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 359/907 (39%), Positives = 547/907 (60%), Gaps = 86/907 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 DNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNL EV+DGC A IDNP I + LM+ I PDFPTGA I G G+KNAY TGRG Sbjct: 183 ATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIYGLQGVKNAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE ++IVVTEIPY VNKA ++E IA+LV+E ++ I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIESGET-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A++ILN+L++ T+LQS FSVN +AL +P L +K FV R Sbjct: 302 GMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVNGRPRLLNLQECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 362 DVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RLA+LTGL D + E L IK Sbjct: 416 --------------------FNLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKN 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL + R ++K EL +K++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILDNPERCKEVMKNELYDIKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLTDFKEQARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+LSL G+ + + ++E + YVVF TK G V++ L Sbjct: 576 PEGDKSSKGRAIQNMLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V +++++ K G+ RF + +R GR S GV Sbjct: 636 YSRPRNNGVIAININDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L + D+VI M +V ++ Sbjct: 695 RGMKLDEDGEDEVIGMVVVNDSE------------------------------------- 717 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LV Sbjct: 718 --------------NETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITE--KTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESE 901 A+ V D++ +++++ G +IR+ V+E R+ RAT+GV + + +K + + SV ++R +E Sbjct: 762 AIKTVTDDNDLMIINKSGIVIRMAVSECRVMGRATQGVRLINLSKKSDTIASVCKVRSAE 821 Query: 902 IVDEAES 908 + ++ + Sbjct: 822 MEEKVDE 828 >gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] Length = 851 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 354/901 (39%), Positives = 541/901 (60%), Gaps = 84/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NPD LM+++ GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R SA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A++ + EV+ Sbjct: 303 ISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKDILVAYLTHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 ---------------DGYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ + R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T++ GY+ Sbjct: 457 ILAHQERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L+ E+I ++ + S + Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLNFEDDEKIQAVISVRGEASESKD-YLFFVTRLGVVKRTAVSEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ IL+ T+ G VRF ++RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI Sbjct: 695 LRDNDVVIGA-------------------------------------------------- 704 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ +L ++EKGFGK+T + ++ I R GKGI+ +++ N G L + ++ Sbjct: 705 ---DVVTSSDNVLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKN--GVLAGMTIIH 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I++ + +G +IR + + RAT GV + + +V ++ ++ + ++ DE + Sbjct: 760 GHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQEDLPDEIAT 819 Query: 909 T 909 Sbjct: 820 D 820 >gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01] gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01] Length = 805 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 378/888 (42%), Positives = 529/888 (59%), Gaps = 86/888 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK Sbjct: 2 SQVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A+I GEVMGKYHPHG+AAIYDALAR+AQ W+LR L++GQGNFGS+DGDPPAA+RYTE Sbjct: 62 SAKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL +L D+ K+TVDFRPNYDGS +EP VL + PN+LVNG GIAVGMAT++P H Sbjct: 122 RLSPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD VA+IDNP I L+ +M + GPDFPTG + R GI+ AYATGRGS+ +R Sbjct: 182 NLSEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKLS-RKGIQEAYATGRGSLKVRAK 240 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ G R +VVTEIPYQVNKA ++ +IA LV+ K+I DI LRDESDRQG R+ IE Sbjct: 241 VRIEE-KGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIE 299 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGAS V+LNQLY++T+LQ+ F+VN++A+ +P+ L+ +++ ++ R+EVV RR+ Sbjct: 300 LKRGASPQVVLNQLYKHTALQTSFTVNLLAIVNGEPKVLPLLSLMRHYLDHRKEVVRRRS 359 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KA +RAHVL GL IA+ ++DEV+ +IR S + AR+ LM+R Sbjct: 360 LFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMER------------- 406 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE+Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 -------------FGLSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIARLKAILEE 453 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 RL +K++LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 454 EGRLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDLIEDEPMVITLTAQGFLKRLPL 513 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGGKG ++ED +F+ H +L F++ G VY+ KV+ LP QA Sbjct: 514 ESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQA 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG + +L L + E + ++ + Y+VFAT+ G V+R L ++ + +G Sbjct: 574 RGVHVKTLLPLAEEEEVAALLSVRGLD---GEGYLVFATERGLVKRTALREYQNLGAAGL 630 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732 IA++L D ++ V E++ +L T+ GQ +RF + +R GR+S GV GI K G Sbjct: 631 IAIRLLEGDRLIGVALSDPEDEAILATEEGQAIRFALEEVRA-TGRDSQGVTGIRFKKPG 689 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ V + Sbjct: 690 DRVVSLVTVKPGEMVD-------------------------------------------- 705 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VS +G+GKRT ++ + R G G+ VS ++G L A+ V + Sbjct: 706 -------LLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVST--KVGRLAALLKVRGTED 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++++S KG IR PV +IR SR T GV + + +D+ VVS + E Sbjct: 757 LLVLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEE 804 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 105/276 (38%), Gaps = 62/276 (22%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 F ++ + V+ T G ++R L + R G IA K DE + V Sbjct: 486 SFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQA 545 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYD 749 D+LL T G+ R + + GR + GV + LA+ ++V ++ V D Sbjct: 546 HEDLLLFTNRGRVYRLKVYELPEM-GRQARGVHVKTLLPLAEEEEVAALLSVRGLD---- 600 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E +++ +E+G Sbjct: 601 ----------------------------------------------GEGYLVFATERGLV 614 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT+ ++ N G+ A + + + L+ V + D+ IL +++G IR + E Sbjct: 615 KRTALREY--QNLGAAGLIAIRLLEGDR---LIGVALSDPEDEAILATEEGQAIRFALEE 669 Query: 870 IRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 +R R ++GV K +RVVS+ ++ E+VD Sbjct: 670 VRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVD 705 >gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch sediment'] Length = 841 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 383/909 (42%), Positives = 556/909 (61%), Gaps = 86/909 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MPEEQQHIGLNRVGEVRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ + Y K ARI GEV+GKYHPHG+ A+YD + R+ QD+S+R LI+GQGNFGSV Sbjct: 61 QELGLSAGRSYKKAARIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL K A +L D+ K+TVD PN+D + +EP +L A PN+LVNG Sbjct: 121 DGDAPAAMRYTEVRLAKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL E VD + ++++PD D LM ++ GPDFPTGA I GRTGI++A Sbjct: 181 GIAVGMATNIPPHNLSETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R + +EK+ G RE I+V+E+PYQVNKA ++E+IAELVR+++I IADLR Sbjct: 241 YLTGRGLIRMRAKAFVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIELK+ A ILNQL+++T++QS F M+AL +P+ L L Sbjct: 301 DESDREGMRIVIELKKEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSH 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +V+RRT++ L KA +RAH+L G IA+ +LD V+ +IR S + + AR LM++ Sbjct: 361 FIEHRKTIVIRRTRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQ 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +S++Q +AILELRL RLT L R I++E + Sbjct: 421 --------------------------FGMSQIQAQAILELRLQRLTQLERQKIQDEYSET 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ IL+S + + IIK+ELL++K+ RRT I+E ++E ED + E+MV+ Sbjct: 455 IAAIERYRAILASEALVCQIIKEELLAIKETYGDLRRTEILEETTEIELEDMLADEEMVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++H GY+KR L+ YR+QRRGGKG +G+ ++ED+V LF+ +TH+ +L F++ G V+ Sbjct: 515 PITHGGYIKRSNLNAYRSQRRGGKGMTGMATKEEDYVEHLFVATTHSHLLLFTNQGKVHW 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ LP A+GKAL N L L GE+ITT++P + E + Y++ AT+ G V++ Sbjct: 575 LKVYGLPQLGHAAKGKALANFLQLGVGEQITTVIPIRQFEV---DRYLLMATRRGIVKKT 631 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +L+ + G IA+ LD DE+++V +++ILL T+ G +RF +R AGR Sbjct: 632 ELNAYGNPRAGGIIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFKEDEVRS-AGRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+GISL GD+V+ +V A Sbjct: 691 ARGVKGISLEGGDEVVGAEVVAQGAA---------------------------------- 716 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +LTV+E+G+GKRT ++R+ +R GKGI + N G Sbjct: 717 -------------------VLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRN--GP 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE 899 V V V DQI+++S +G + R+ V+EI + RAT+GV + +RV +V R + + Sbjct: 756 AVGVMLVQSGDQIMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSD 815 Query: 900 SEIVDEAES 908 E V+EA+ Sbjct: 816 DEGVEEADG 824 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 15/230 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ Y R GG + + D + + + +L + G + K Sbjct: 623 TRRGIVKKTELNAYGNPRAGG--IIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFK 680 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + ARG + +SL G+ + V+ T+ G +R Sbjct: 681 EDEVRSAGRAARG---VKGISLEGGDEVVGAEVVA------QGAAVLTVTERGYGKRTDP 731 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ +R GK + + + D + V + I++ ++ G+ R + I GR Sbjct: 732 EEYRLQSRGGKGIINIRATDRNGPAVGVMLVQSGDQIMMISQEGRITRMRVDEI-SLIGR 790 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + GVR L D+V ++ ++ D +E D Sbjct: 791 ATQGVRLQGLEPTDRVAAVTRLVSDDEGVEEADGPQSPPEPGGEAGPLDE 840 >gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 359/909 (39%), Positives = 553/909 (60%), Gaps = 91/909 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D CVA IDN DID++ LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYMTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE +S ++IVVTEIPY VNKA +++ IA+L EK+I I++ DESDR+G R+V Sbjct: 243 AKAEIETSST-HDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +K + RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKTKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + + Sbjct: 695 DEDGQDEVVGMICIKDPET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD-- 904 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ D Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSETEEDII 821 Query: 905 ---EAESTE 910 +++++E Sbjct: 822 AEEDSDASE 830 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 103/239 (43%), Gaps = 12/239 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PETETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GR + GVR I+L K D++ S+ V + + I + E Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSETEEDIIAEEDSDASEKTQNDIVNNENEE 843 >gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211] gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9211] Length = 881 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 539/918 (58%), Gaps = 64/918 (6%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + ++ E E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPVEPNNGVPGEFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ L++G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GS+D DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSIDNDPPAAMRYTESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G +A+I NP++ + L +II+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV+ IE DR+ +++T++PYQ NKAA++E+IA++V +K+ Sbjct: 241 IQETYLTGRGSVTMRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R + V+LN L++ T LQS FS NM+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L+ +L+ F+ FR E + RRT YLL KA +R H+L+GL +A+ LD ++ +IR + + Sbjct: 361 SLLRMLQVFLDFRVETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSV 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 A+ +L + L+EVQ AIL+++L RLT L D Sbjct: 421 AKAKLQE--------------------------LHRLTEVQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L I + DIL+++ R+ +IK+EL+ +K++ + PRRT I++ ++D D Sbjct: 455 IRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKEKYEAPRRTEILDLGGGIDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P++ + A RG +G+SG + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+PI S A+G ++ +L + + E IT+++ + ++ +++ T Sbjct: 575 SDRGVAYSLPAYRVPISSRSAKGTPVVQLLPIPREEAITSLLSVSSFD---DDNHLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 K G ++R +S F +I +G IA+ L+ D + V + +L+ ++ G + F ++ Sbjct: 632 KGGYIKRTLVSAFSKIRANGLIAISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLND 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L KGD ++ M ++ AD S D Sbjct: 692 DELRPL-GRTARGVRSMNLRKGDSLVGMDVLPRELADRIAGTNNDDSDSDSDSDSDSDEV 750 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 I + ++L S G GKR FR+ R+G G+RA Sbjct: 751 GI----------------------AEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAI 788 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 N+ +LV + + ++++ V++KG ++R ++I SRA GV + + Sbjct: 789 KF--RNDGDSLVGLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGVRLQRLDSGDH 846 Query: 891 VVSVERIRESEIVDEAES 908 + V + + V + +S Sbjct: 847 LSEVVLVPPEQEVQDDDS 864 Score = 57.9 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 96/261 (36%), Gaps = 30/261 (11%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ ++ ++ GY+KR +S + R G + + D D +T + + ++ SVL Sbjct: 621 FDDDNHLLMLTKGGYIKRTLVSAFSKIRANG--LIAISLEDGDALTWVRLAASGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINIL----------------------SLNQGE 628 S G ++ L ARG +N+ + + + Sbjct: 679 SRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKGDSLVGMDVLPRELADRIAGTNNDDSD 738 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEIL 685 + ++ +V+ A+ G +R ++ F R+G A+K D ++ Sbjct: 739 SDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRNDGDSLV 798 Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 ++ ++L T+ G VR I R + GVR L GD + + +V Sbjct: 799 GLKVLGHGEELLFVTEKGIIVRTSADKI-SQQSRAATGVRLQRLDSGDHLSEVVLVPPEQ 857 Query: 746 ADYDERICYMKHMSAQRRLIS 766 D+ ++ + ++ Sbjct: 858 EVQDDDSPGVEEIQSENNASP 878 >gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] Length = 840 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 355/900 (39%), Positives = 542/900 (60%), Gaps = 83/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ K Sbjct: 2 ENGGEKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++++Y A+ RMAQ+WSLR L++GQGNFGSVDGD PAA R Sbjct: 62 PYKKSARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ KDTVD N+DGS +EP VL R P +LVNG GIAVGMATN Sbjct: 122 YTEARMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 +P HN+ + +D A IDN DID++ L++II+ PDFPTG I G +G++ +Y TGRG +V Sbjct: 182 MPPHNIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIYGYSGVRESYLTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + +E RE+++V EIPY VNKA ++ +IA+L+ EK+I I+++ DESDR+G R Sbjct: 242 IRPKTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+ A ++V+LN L ++T+LQS F VN VAL +P L I++ FV R +VV Sbjct: 302 IVIDIKKDAISNVVLNTLLKHTALQSSFGVNNVALVHGRPRLLNLKDIIRYFVEHRHDVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ L KA +RAH+L GL IA ++DEV+R+IR S P+ A+ LM Sbjct: 362 VRRTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALM----------- 410 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L++ Q AI+ +RL +LTGL +D +R E + I D Sbjct: 411 ---------------DAFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLND 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ + IIK ELL+VK + RRT IV + ED E+MV+T+SH+GY+K Sbjct: 456 VLAHVELRMEIIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS Y+ Q RGG G G RDEDF+ + + + H ++LFF+ G + KV+ +P G Sbjct: 516 RTPLSEYKVQNRGGVGSKGSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEG 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + Q++G+A+ N+L++ +++ + + D N+ Y+V TK G +++ L + + Sbjct: 576 TKQSKGRAIQNLLNIEPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G A+ + D++L + ENDI++ K G+ +RFP S +R GR + GVRGI Sbjct: 636 PRQNGVNAITIKEGDQLLEAKLTNGENDIMIAVKSGKAIRFPESKVRPM-GRTASGVRGI 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+ I M V +A+ Sbjct: 695 WMDDDDEAIGMVCVEPNNAN---------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL VSE GFGKR++ D+RI+NR GKG++ ++++ + G L+A+ V Sbjct: 715 ------------ILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTE--KTGNLIALIDV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D +++++ G IR+ V+ +R+ R T+GV + + ++ + +V ++ ++ + +E Sbjct: 761 TDEDNLMIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNEDSIAAVAKVSAAKEEENSE 820 >gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] Length = 856 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 355/904 (39%), Positives = 551/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DI+++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE +S ++IV+TEIPY VNKA +++ IA+L +K+I I++ DESDR+G R+V Sbjct: 243 ARAEIETSST-HDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ FSVN VAL +P L ++K FV R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLKDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +I EL+ VK + RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 SNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D++ +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ + DE Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSESMEDEI 821 Query: 907 ESTE 910 + Sbjct: 822 PVDD 825 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 107/251 (42%), Gaps = 12/251 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T +ND+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K D++ S+ V + + + E+ Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPPTINEVEGEEKDY 844 Query: 774 SLKNDSSVEGN 784 + N + E Sbjct: 845 NSDNGINNEDE 855 >gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] Length = 848 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 358/902 (39%), Positives = 549/902 (60%), Gaps = 86/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGNFGSVDGD AA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D CVA IDN +ID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE S ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 AKAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L +++ F+ R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIRYFIEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELVEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YVVF TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + D Sbjct: 695 DEDGQDEVVGMICIKDPDT----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ + Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEDEIL 821 Query: 907 ES 908 E Sbjct: 822 EE 823 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 104/244 (42%), Gaps = 12/244 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 VV + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVVFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PDTETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K D++ S+ V + D + E Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEDEILEEGNEIIPENSQNTKDSQDEINN 844 Query: 774 SLKN 777 + Sbjct: 845 VNEE 848 >gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] Length = 868 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 356/896 (39%), Positives = 537/896 (59%), Gaps = 87/896 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ I + + V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + Sbjct: 1 MSNEITF--DPNIGKVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTL 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ +K Y K A G V+G+YHPHG+A++YDAL RMAQD+SLR L++G GNFGSV Sbjct: 59 YENGIFPDKAYRKSADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE ++ K + +L D+ K+TV+F NYD +EP+VL AR+PN+LVNG Sbjct: 119 DGDPPAAYRYTEAKMSKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGST 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+D +IDNPD +L +M I+GPDFPT +I+G++GI+ A Sbjct: 179 GIAVGMATNIPPHNLREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +R + IE+ + R +IVVTE+PYQVNKA ++E IA V++KRI I+ LR Sbjct: 239 YATGRGKIQVRARAEIEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+VIELKR A+ +ILN+LY +T +Q F V +AL P+ TL +L+ Sbjct: 299 DESNREGMRIVIELKRDANPQIILNKLYSFTQMQETFGVINLALVNGVPKVMTLKEMLEH 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ F+ EV+ +RT+Y L KAR+R H+L GL IA+ +DEV++ IR S ++ L++R Sbjct: 359 YIEFQSEVIRKRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L E+Q AI+++RL +L+GL R I EL L Sbjct: 419 --------------------------FGLDELQADAIVKMRLGQLSGLERMKIEEELAGL 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE IL + +L I+++EL +++D+ RRT I+ +++ ED I ED VV Sbjct: 453 LEKIKEYETILGDDALILVIVREELAAIRDKFGDERRTEILAVSGEVDIEDLIPEEDCVV 512 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR P +Y+ Q+RGG+G +G+ R+EDF +LFI STH +VLF ++ G +YK Sbjct: 513 TLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYK 572 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P G ++G ++N+L + E++T+++ + + + Y+V TK G ++R Sbjct: 573 LKCYEIPEGGRTSKGTNIVNLLPIEGDEKVTSMIRITDFD---PDQYLVMVTKSGMIKRT 629 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L + + ++G IA+ L DE+ V + +++ T+ G +RF + R + R+ Sbjct: 630 VLDAYKNVRKNGLIAISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLS-RS 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVR I L D+V+ MA + Sbjct: 689 AKGVRAIKLRGDDEVVGMARLR-------------------------------------- 710 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ++TV+++G G+RT D+RI R G G VS +E G Sbjct: 711 ---------------EGATVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVS--DEKGH 753 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +VAV V+++D +IL+S+ G +IR+ V+++ + SR GV + D RVV+ R Sbjct: 754 VVAVKVVDEDDDLILISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARVVTFAR 809 >gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] Length = 874 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 389/893 (43%), Positives = 547/893 (61%), Gaps = 67/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AIL+LRL +LTGL + I +E +L EIK Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+P Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILP------------------------------ 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 V+ +++ I + T G + P++ FA + G+ Sbjct: 636 ---------------------VDEFSEDKFIFMATGDGTVKKTPLTQ---FANVRANGLI 671 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D +I + I A+ ++ + T+ Sbjct: 672 AVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGR---TAAGVRGMKLAED 728 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + E ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 729 DQVVSLIVPANEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + D++++++D GTL+R V+E+ R T+GV + TA+DE VV ++RI Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 154/424 (36%), Gaps = 29/424 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ ++ H+L + + E + +R + A Sbjct: 469 EHEKILDEYKALLDEIKELMHILASTERLMEVIREELETVRDAFG-----DVRRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G ++ E + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSED 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLTQFANVRANG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L + +++ +++ N ++ T++G Sbjct: 701 KVVRFAEDKVRAMGRTA---AGVRGMKLAEDDQVVSLI------VPANEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + D + + +++++ T G VR +S + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTRVSEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + T+ Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVELVEGEESEEAVNATEESEAPTQSDE 870 Query: 774 SLKN 777 + Sbjct: 871 DSQE 874 >gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] Length = 861 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 365/902 (40%), Positives = 547/902 (60%), Gaps = 85/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I +V ++ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQDWS R L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++NPD LME I GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE +E+I+V E+PY VNKA ++E+IA+L R+KRI I DL DESDR G R Sbjct: 243 VRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ TS+Q+ F NM+A+ P+ +L IL+ ++ +E V+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y KA RAH+L GL IA+ +++E++RIIR S + A+ L++ Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE Q +AIL++R+ RLTGL RD I +E L I++ D Sbjct: 413 ----------------TYGLSEKQAQAILDMRMVRLTGLERDKIESEYTELIALIEDMAD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ II+ ELL V+++ RRT ++ +L +EDED I ED+V+T++ GY+ Sbjct: 457 ILAKPERIHKIIETELLEVQEKFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S +++QRRGG+G G+ + D+DF+ L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPSSEFKSQRRGGRGIQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ GE + ++ + + LY+ F T+ G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGIDSGETVQAVINVRGEAE--DGLYLFFTTRLGTVKRTDVKAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE++SV + +I++ T +G V F +R GR + GVRGI Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI + Sbjct: 694 LRENDYVIGV-------------------------------------------------- 703 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++ +L ++EKG+GKRT + ++ I R GKGI+ +++ N G L + V Sbjct: 704 ---DLLKEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L+++ G +IR V+ + RAT GV + A++ +V ++ ++ I DE + Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDE 818 Query: 909 TE 910 TE Sbjct: 819 TE 820 >gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] Length = 821 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 376/903 (41%), Positives = 538/903 (59%), Gaps = 84/903 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ + I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 1 MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 NK Y K ARI G+V+GKYHPHG+ ++YDA R+AQD++ R LL++G GNFGS+DGD Sbjct: 61 TPNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGR Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDR Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q AIL++RL RLTGL R+ I +E L I+ Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574 Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P GS +RG A++N+L L GE +TT++ + E N+ + T+ G V+R + + Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHENVNLFMVTEFGVVKRTAIEE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I RSG A+ LD D ++SV T DIL+ TKLG +R +R+ R + GV Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD V+ ++ ++ Sbjct: 691 RGIKLKTGDVVVGAGVLESDES-------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E + T+SE+G+GKR + + + R G G + ++ ++ G +VAV Sbjct: 713 ------------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818 Query: 904 DEA 906 E Sbjct: 819 SED 821 >gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] Length = 815 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 371/898 (41%), Positives = 551/898 (61%), Gaps = 85/898 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTG+ +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+I++TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ + Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E+Q +AIL++RL RLTGL RD I E + L I + D Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K ELL VK++ RR+ I+E + +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + ++F+TK+G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTNLIFSTKYGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V + Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILTV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 N+ +++++D+G +IR+ V+ I R GV + + D++V +V + E ++ Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEESYEDE 815 >gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922] gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922] Length = 864 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 362/892 (40%), Positives = 535/892 (59%), Gaps = 88/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N+ Y Sbjct: 5 EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ ++YD + RMAQ WSLR LL++GQGNFGSVDGD PAA RYT Sbjct: 65 KKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RLQK + LL D+ K+TVDF+ N+D + EP VL R P +LVNG GIAVGMATN+ Sbjct: 125 EARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMA 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG VA IDN DI +D L + I PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 185 PHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIYGYDGVKQAFETGRGRVVMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 ++ E+ R+ I+VTEIPYQVNKA M+ K A+L+++ ++ IA++RDESDRQG R+V Sbjct: 245 AKANFEEV-HGRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK A +V+LNQLY++T LQS FS+N +AL +PE+ L +++ FV R EVVVR Sbjct: 304 YVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNGRPEQLNLKDMIRHFVDHRHEVVVR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT++ L KA++RAH+L G +LD ++IIR S PE AR LM Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMT--------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAILELRL LTGL D IR E + I+ Sbjct: 415 -----------------AFDLSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLK 457 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +ILS IIK+EL +K + RR+ I D+ ED I +++V+T+SHLGY+ Sbjct: 458 NILSDEDLRFSIIKEELEEIKRKYADERRSEIDYSGGDLNIEDLIPDDNVVLTISHLGYI 517 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL+ Y+ Q RGG G RDEDF+ + + + H +LFF+ G + +V+ +P Sbjct: 518 KRTPLTEYKKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPE 577 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS ++G+A+ N++++ +++ + + DE NN YV+ TK+G +++ L + Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G A+ + D +L ++ I++ TK G+ +RF +R GR + GVRG Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPM-GRTASGVRG 696 Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 I+L K ++VI M +V + Sbjct: 697 INLGDDKDNEVIGMIVVSDME--------------------------------------- 717 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L VSEKG+GKRTS D+R +NR GKG+ ++++ + G L+A+ Sbjct: 718 ------------NETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITE--KTGKLIAI 763 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V D++ +++++ G IR ++EIR+ RAT+GV + + K++ + ++ + Sbjct: 764 ESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIAK 815 >gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10] gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10] Length = 840 Score = 851 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 373/895 (41%), Positives = 543/895 (60%), Gaps = 91/895 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE E+ I + I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G Sbjct: 2 ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 K Y K GE + YHPHG+AA+YD+L RMAQD+SLR L++G GNFGS DGD AA Sbjct: 62 EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNLGE +DG AV+DNP+I +D LM+ I+GPDFPT A I+G+ GI+ A+ TGRG Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKRGIREAFKTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306 +V+R + IE+ G+R +I++TEIPY VNKA ++EKIA+LV++KRI I+ ++DES R + Sbjct: 242 LVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGREE 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLIGILKAF 361 R+VI+LKR A+ +V+LNQLY+ T LQ FSVNMVA+ Y+P L I+ + Sbjct: 302 PVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDYY 361 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +A +E+V+ RRTK+ L+KA RAH+L GL A+ +LDEV++ IR S A+ L +R Sbjct: 362 IAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSER- 420 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S+ Q +AI+++RL RLTGL R+ + E N L Sbjct: 421 -------------------------FGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELL 455 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +IK D+L++ + IIK EL +K++ RRT+I +++ ED I E+ V+T Sbjct: 456 EKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQEEESVIT 515 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++H GY+KR+P Y++QRRGGKG G+ R+EDFV +LF+ STH ++FF++ G VY+ Sbjct: 516 MTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRL 575 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P QA+G A++N+L L+ E++TT++P E + LY++ ATK+G V++ Sbjct: 576 KAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYK---EGLYLIMATKNGLVKKTD 632 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L ++ I + G A+ L D+++ V+ DI+L+T G +RF + R GR S Sbjct: 633 LMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPI-GRVS 691 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+GI L +GD VI M + Sbjct: 692 QGVKGIELDEGDFVIGMEVCTDNTT----------------------------------- 716 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L V+E GFGKRT ++++ R GKG+ +++ + G Sbjct: 717 ------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGKS 756 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + + V++ D I+L+S G++IR+ V+EI I RAT+GV + ++ VVSV R Sbjct: 757 IGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVSVAR 811 >gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] Length = 838 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 362/872 (41%), Positives = 523/872 (59%), Gaps = 56/872 (6%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYTECRLQ A LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HNLGE+VDG VA+I NP+I Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT----SGDREQIVV 268 LM+ I PDFPTG ILGR+GIK+AY TGRGSI +RGV+ +E D+E I+V Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAE+V +KRI I+D+RDESDR+G RVVIELKR A V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQS F NM+AL G +P+ T+ L+ F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+ NLD V+ +IR + + TA+ +L+++ Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQ--------------------------FG 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSE Q AIL+++L RLT L I+ E L + I + DIL++RSR+L II+ E L + Sbjct: 395 LSEPQADAILQMQLRRLTALEAQKIQAEHEELQVRIADLQDILANRSRILEIIETEALQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K DTPRRT I E +++D D I E V+ V+ GY+KR+P+ + AQ R +G++ Sbjct: 455 KTTHDTPRRTAIQEVEGELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAA 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 M+++D V H S+LFFS G VY + +++P S ARG ++ +L + E Sbjct: 515 ARMKEDDGVEHFLTCCDHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+++P E +++Y+V T+ G +++ L F I +G IA+ L D++ V Sbjct: 575 KITSVVPVSEFT---DDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 C E+ I++ + G + F +R GR + GV+ + L D++ISM I+ Sbjct: 632 LCRAEDSIIIGSSQGMAIHFKADHDQLRPL-GRATRGVKAMKLRSKDELISMDILPAQVV 690 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + ++ + ++ E E + ++L V+ Sbjct: 691 ERLIATA-----------------NSEEVETEDDTSDEVNGEEVHETAGQGPWVLVVTTG 733 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G GKR FR+ NR+G G+ ++ L A+ VN+ D++++V+ +G +IR Sbjct: 734 GLGKRVPVSQFRLQNRAGMGLVTIKF--RHKKDKLAALRVVNEGDELMMVTMRGIIIRQA 791 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ I SR G+ + +++ + +V + Sbjct: 792 LDAISPQSRMATGIRVQRLDEEDAIAAVALVP 823 >gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 825 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 373/887 (42%), Positives = 562/887 (63%), Gaps = 70/887 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V I E+++SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + WNK Y K Sbjct: 7 EIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD++ RMAQ++SLR +LI+GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K + LL DL K+TV+F PNYDG+ P +L ++ PN+L+NG GIAVGMATNIP HN Sbjct: 127 MSKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV- 253 L EV+DGC+A I + +I L L++ I GPDFPT +I G+ GI+ AY TG+G I IR Sbjct: 187 LNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIYIRARN 246 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E I+ EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+V+E Sbjct: 247 KIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+ A +++ILNQLY T LQ F +NMVAL +P+ +L ILK F++ REE+V RR+ Sbjct: 307 IKKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREEIVTRRS 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+K R+H+L GL+IA+ N++ ++ +I+ + + A+ +++++W + + + Sbjct: 367 IFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKI--- 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 D + +E Q +AIL+LRL +LT L ++ + E + L +IKE IL S Sbjct: 424 -------NQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKS 476 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R+ +I+ EL+S+K+ RRT I E D+ ED I +ED+VVT+SH GYVK PL Sbjct: 477 RDRMREVIRDELVSIKNNFGDQRRTEITENNPDISIEDLINQEDVVVTLSHSGYVKYQPL 536 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y AQ+RGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++LP S A Sbjct: 537 SDYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHA 596 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G+ ++N+L L+ ERIT I+P E + +NL + AT G V+++ L +F + +G Sbjct: 597 KGRPIVNLLPLSNKERITAILPIHEFK---DNLNIFMATAQGIVKKSSLKEFKKPRIAGI 653 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L + DE++ V +N+I+L T+ G+ V+F +++R GR + GVRGI ++K D Sbjct: 654 IAINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTM-GRTASGVRGIKISKND 712 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ + Sbjct: 713 KVVSLIV----------------------------------------------------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K++ IL + G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI Sbjct: 720 PYKKESILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKN--GKIIGAIQVVEKDQI 777 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++++ GTL+R+ +EI + R T+GV++ T+K+E+VV+++RI E Sbjct: 778 MMITNAGTLVRIRASEIGVLKRNTQGVILIRTSKNEKVVALQRIVEP 824 >gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] Length = 828 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 366/891 (41%), Positives = 550/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNF S+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E GFGKRTS+ D+ R GKGI+ ++ N G L + V+ Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I+++++KG +IR V I RAT GV I D ++V+ ++ + Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RIR+++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 15/224 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +D+ R GK A + ++ + T DI++ T G +R ++ I GR Sbjct: 724 TDYPTKGRGGKGIKTANIIPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTGR 782 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 853 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 348/904 (38%), Positives = 545/904 (60%), Gaps = 69/904 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ + V I ++M+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM ++G +K Y Sbjct: 3 EQGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY L R+AQ W++R L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF+PN+D + +EPVVL AR PN+LVNG GIAVGMATN+ Sbjct: 123 EARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D VA I NP I ++ LM I+ PDFPTG +I G G++ A+ TGRG I+IR Sbjct: 183 PHNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIYGYAGVREAFETGRGRIIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE ++ ++IVVTEIPY VN+A +++ IA L EK++ IA++ DESDRQG R+V Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR +A+VILN+LY+Y+ LQS FSVN VAL +P LI ++ FV R EVV R Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKGRPRTLNLIDLISNFVEHRHEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA +RA +L GL I + NLDE ++IIR S P A+ L+ R Sbjct: 363 RTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIAR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q ++ELRL +LT + +D +R E L I++ DIL Sbjct: 412 ---------------FSLTERQAAYVVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + II+ EL+ + + RRT IV DM ED + M++T+SH GY+KR Sbjct: 457 AKVERRMKIIEDELMELGSKFGDKRRTEIVYATEDMNPEDFYADDQMIITISHQGYIKRT 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ ++AQ RGG G G +DEDF+ ++ + H +LFF+ G Y KV+ +P GS Sbjct: 517 ALAEFKAQNRGGVGSKGGATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSK 576 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L++ ++I + D + Y+VF T++G +++ L + + Sbjct: 577 TSKGRAVQNMLNIEADDKINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPR 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V ++I++ + G+ +RF S +R GR + GV +++ Sbjct: 637 QNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRFHESKVREM-GRTATGVNAMAI 695 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 K GD+V+ M V AD E + + +R + +E ++K D Sbjct: 696 DKANGDEVVGMVAV----ADKTETVLVVSEKGYGKRSQLDELDENGNIKLD--------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E G +R++NR GKG++ ++++ + G LV++ V Sbjct: 743 -----------------ENGE----PIAIYRVTNRGGKGVKTMNITE--KTGKLVSIKLV 779 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDEA 906 +D++ I++++ G IR+ V++IR+ RAT+GV + + +++ + +V ++ +++I +E Sbjct: 780 DDSNDIMIINKSGMAIRMHVSDIRVMGRATQGVRLINLERRNDEIAAVCKV-DADIEEEN 838 Query: 907 ESTE 910 +S + Sbjct: 839 DSVD 842 >gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] Length = 824 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 358/876 (40%), Positives = 529/876 (60%), Gaps = 85/876 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + K ARI G+VMGK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ K A +L Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG + + +E Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+VI+++R SA VIL Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV RRT++ NKA RA Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 361 HILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMER------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS+ Q +AIL++RL RLTGL RD I NE L I + DIL++ R+L II+ E Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTE 454 Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 L + RRT ++ +L +EDED I E++V+T+++ GY+KRV S +RAQRRGG Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ + DEDFV L STH ++LFF++ G VYK K + +P A+G +IN+L Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 ++ ERI I+ Y+ F T+ G V+R ++ F I +G IA+ L DE Sbjct: 575 IDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V E+ +++ T G V F + +R GR + GVRGI L GD V+ A++ Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAVI-- 689 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 ++ +L + Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E G+GKRT ++ I R GKGI+ +++ N G L + V+ + I++++DKG LI Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V + RAT GV + + +VV++ + Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 792 >gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab] gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab] Length = 846 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 369/897 (41%), Positives = 532/897 (59%), Gaps = 78/897 (8%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I S + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KC Sbjct: 4 RIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGS+D DPPAA RYTECR Sbjct: 64 ARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECR 123 Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 L A LL D+ +TVDF NYDGS QEP+VL AR P +L+NG GIAVGMATNIP H Sbjct: 124 LTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+I NP++ LM+ I PDFPTG +I+G+ GI+ AY TGRGSI +RGV Sbjct: 184 NLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIREAYTTGRGSITLRGV 243 Query: 254 SHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 + +E RE I++TE+PYQ NKAAM+EKIAELV EK++ IAD+RDESDR+G R Sbjct: 244 ATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGMR 303 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A V+LN LY+ T LQS F VNM+A+ +P TL L+AF+ FR EV+ Sbjct: 304 VVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLRDALQAFLDFRAEVI 363 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +R H+L G +A+ LD V+ +IR + + TAR EL Sbjct: 364 ERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAEL------------ 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T+ LSE Q IL+++L RLT L + I+ E L +I + D Sbjct: 412 --------------QATLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRD 457 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R R++ II +EL +K +PRR+R+ +++ D I + V+ ++ GY+K Sbjct: 458 ILARRERVMQIISEELQQLKSRFASPRRSRLCLEDCELKVADLIENRETVIFLTEQGYIK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L ++ Q R +G++G ++D+D + F +H ++LFF+ G VY + +P G Sbjct: 518 RMDLEEFQVQGRATRGKAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQG 577 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG A++ +L + + ER+T+++P E ++ Y+V T+ G +++ LS F + Sbjct: 578 SRTARGSAIVQLLPITREERVTSMVPVSEFS---DDEYLVMLTRAGYIKKTALSAFANVR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727 +G IA+ L+ DE+ V +D+++ T+ G C+RF +R GR + GVR I Sbjct: 635 SNGLIAISLEENDELRWVRRARSSDDVVMATRQGMCIRFRADDEQLRPL-GRATRGVRAI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L GD ++SM I+ ER Sbjct: 694 TLNPGDDIVSMDIIFAESVMAAER------------------------------------ 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L ++L ++++G GKR++ FR NR GKG+ AT E L A+ V Sbjct: 718 ---EGERLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKF--RQESDELAALRIV 772 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 N D+I+LV+ +G ++R I SR GV++ ++ +V V + S I D Sbjct: 773 NAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPASFIRD 829 >gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 853 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 368/923 (39%), Positives = 538/923 (58%), Gaps = 107/923 (11%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EPNVFDKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E++ V +IDN + L+ +MEI++GPDFPTGA ILGR I+ AY T Sbjct: 182 NIPPHNLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GR I +R V++IE + + +I+VTE+PY VNKA ++EKIA+LV+EK+I I + DES Sbjct: 242 GRAKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L ++ Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA +RAH+L GL IA+ ++DEV+RIIR S N A+ +LM+R Sbjct: 362 HQEEVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q++AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ +LL +IK+E+ + D+ RRT I ED I ED V+ ++ Sbjct: 456 IEELQAILADVKKLLTVIKEEIQIIADKYGDDRRTAIGYDDDV-SMEDLIPDEDTVIAMT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 HLGY+KR+ + +R+Q RGGKG G+ +ED++ DL + + H ++FF++ G VY+ K Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKA 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT I+P E + Y+ AT++G V++ + Sbjct: 575 YEIPEAGRTARGTAIINLLQLQPDEKITAIIPMREY---NEDKYLFMATRNGMVKKTPMV 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L T+ G C+RF + +RV GR S+G Sbjct: 632 EYEHVRKNGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRV-TGRVSMG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ + D+VI M + ++ Sbjct: 691 VIGMRFEEDDEVIGMQMESQGES------------------------------------- 713 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L VSE G GKRT +F NR GKG+ ++ + G +V Sbjct: 714 ----------------LLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTE--KTGNIVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRE-- 899 VND +I+L++ +G +IR+ V++I I R T GV + + D +V S+ ++RE Sbjct: 756 AKLVNDGREIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIKVASIAKVRESV 815 Query: 900 ------------SEIVDEAESTE 910 E EAE E Sbjct: 816 TKESNVFDEEFYDEETAEAEDVE 838 >gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] Length = 853 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 363/914 (39%), Positives = 540/914 (59%), Gaps = 97/914 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+ SY+ YA++VI+ RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EPNIFDKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN + ++ ++EII+GPDFPTGA ILG+ GI+ AY T Sbjct: 182 NIPPHNLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R VS IE + + +I+VTE+PY VNKA ++EKIAELV++K++ I DLRDES Sbjct: 242 GRGKIRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGIL 358 DR G R+ IEL+R A+A+V+LNQL ++T LQ F V M+AL +P+ ++ +L Sbjct: 302 DRSGMRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQML 361 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 ++ ++EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM Sbjct: 362 NYYLDHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELM 421 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R LS+VQ++AI+++RL LTGL R+ + NE Sbjct: 422 SR--------------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYR 455 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I E IL+ +LLG+IK+E+ + + RRT I DM ED I E Sbjct: 456 ELEARIAELKSILADEKKLLGVIKEEISIISAKYGDDRRTSIGFDEFDMSMEDLIPDEST 515 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V ++ LGY+KR+ + ++ Q RGG+G G+ D+D++ DL + +TH ++FF++ G V Sbjct: 516 IVAMTKLGYIKRMSVDNFKNQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRV 575 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + +P GS +RG A++N+L + GE IT I+P E + ++ ++ AT++G V+ Sbjct: 576 YRLKTYMIPEGSRTSRGTAIVNLLQMLPGESITAIIPMKEYD---DDKFLFMATRNGMVK 632 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + + ++ + ++G A+ L DE++ V+ DI L TK GQC+RF +R G Sbjct: 633 KTPMMEYANVRKNGLQAIVLRENDELIEVKATDDTKDIFLVTKKGQCIRFHEKDVR-ITG 691 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GV G+ L + DQV+ M Sbjct: 692 RVSMGVIGMKLNEDDQVVGM---------------------------------------- 711 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + + +L VS G GKRT +F R GKG+ +++ + Sbjct: 712 -------------QKESQGPKLLIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITE--KT 756 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVER 896 G +V V D+ ++L++ +G +IR+ VN+I + R T GV + + +D V S+ + Sbjct: 757 GDIVGAKLVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDITVASIAK 816 Query: 897 IRESEIVDEAESTE 910 +R+ + E E Sbjct: 817 VRDDGSKSDGEGLE 830 >gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] Length = 824 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 357/876 (40%), Positives = 529/876 (60%), Gaps = 85/876 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + K ARI G+VMGK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ K A +L Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG + + +E Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+VI+++R SA VIL Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV RRT++ NKA RA Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 361 HILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS+ Q +AIL++RL RLTGL RD I +E L I + DIL++ R+L II+ E Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTE 454 Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 L + RRT ++ +L +EDED I E++V+T+++ GY+KRV S +RAQRRGG Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ + DEDFV L STH ++LFF++ G VYK K + +P A+G +IN+L Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 ++ ERI I+ Y+ F T+ G V+R ++ F I +G IA+ L DE Sbjct: 575 IDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V E+ +++ T G V F + +R GR + GVRGI L GD V+ A++ Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAVI-- 689 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 ++ +L + Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E G+GKRT ++ I R GKGI+ +++ N G L + V+ + I++++DKG LI Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V + RAT GV + + +VV++ + Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 792 >gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] Length = 814 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 360/896 (40%), Positives = 553/896 (61%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I +V + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVDF PN+D EPVVL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + +P+I ++ L +II GPDFPTGA ILG+ GIK+AY+TGRG + +R Sbjct: 183 PHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V IE +RE+IV+TEIPYQVNK+ ++EKIA+LV++KRI I+D+RDESDR+G R+V Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ++A+++LN LY+YT L++ F + +AL P+ L +++ ++ +++VV R Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + + ++ ++ Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q++AIL+++L RL+GL D + E L I L IL Sbjct: 412 ---------------FGLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S LL +I E+ +K++ RR++I+ +++ E+ I +ED+++T++ GY+KR+ Sbjct: 457 NSEENLLNLIIDEMEEIKEKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTKDGYIKRL 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+S G VY K + +P GS Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 Q+RG A+INIL L GE+IT +M E + +V TK G +++ +F I ++ Sbjct: 577 QSRGIAIINILKLESGEKITEMMTLSELN---KDSQIVLQTKMGTIKKTDAENFTNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D ++SV +E +++++TK G ++F + +R GR + GVR I L K Sbjct: 634 GIIAISLKEYDRLISVRQIDKEEELIISTKNGMTIQFNSADLRSM-GRIAQGVRAIKLDK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM I Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K E ++L V+E +GK+TS +F+ NR GKG++ V++ + G ++ PV+ ++ Sbjct: 702 --KGDETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKIIDTLPVDLDN 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906 I++VS G +IR+ V +I I R T GV + + +++R+VSV + E +E Sbjct: 758 DIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTKYSTLEEEEED 813 >gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] Length = 809 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 364/887 (41%), Positives = 547/887 (61%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+ I +E++ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +G +N+ Y K A Sbjct: 2 LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+AA+YDAL RMAQD+++R L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 62 RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + L D+ K TV+FR NYD + EP VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV D +A++D+P + LD L+ I+GPDFPT A++ GR G++ AYATGRGSI +R H Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMYGRQGMRQAYATGRGSIKLRSRLH 241 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E++ RE IV+TEIP+ +NKA+++EKIA+LV E ++ I+DLRDESDR G R+VI+LK Sbjct: 242 VEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDLK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +D+++N LY+YT+L++ + +N++A+ +P+ +L IL+ F+ R+EV++RR++Y Sbjct: 302 RNTLSDIVINTLYKYTALETSYGINLLAVVNNRPQLLSLKQILELFLEHRKEVILRRSRY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ N+DEVVR+IR S P A+ LMQR Sbjct: 362 DLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ++AIL++RL RLT L RD + E ++ I+ I+ Sbjct: 407 -----------FELSEVQSQAILDMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSE 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L G+++ EL ++ +PRRT I +++ ED I E++V+T++ GY+KR PLS Sbjct: 456 VLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLS 515 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q+RGGKG SG + +DFVTDL + H +L F++ G +++ KV+++P G AR Sbjct: 516 AYQQQKRGGKGVSGANVAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTAR 575 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + N+L L++ E + T++ + + N +FATK G V+R+ + + G I Sbjct: 576 GTHIANLLPLDKEEYVATVLCMKDFD---ANHSFLFATKKGMVKRSAVHLYRNYRPHGLI 632 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+++V +E++I L T G +RF S +R GR + GV+GI+L + D Sbjct: 633 AVNLRDGDELIAVREVDEESEIFLITHHGVAIRFACSEVRSM-GRGAAGVKGIALRQEDA 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S I+ D Sbjct: 692 VVSCVIINGDGRDQ---------------------------------------------- 705 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +LTVSE+G+GKRT+ +R +R GKGI ++ ++ G ++ V++ D++I Sbjct: 706 -----LLTVSEQGYGKRTAIDYYRQQSRGGKGIINMRLT--SKTGGVLGAMMVDETDELI 758 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++ ++R+ +IRI RAT+GV + S + VV +RI E Sbjct: 759 MLTSMHKMLRIGTADIRICGRATQGVKLVSLDSEATVVCFDRIVSEE 805 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 102/284 (35%), Gaps = 63/284 (22%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD+ DE++ + + K G RF +S ++ A + R +L + D++ Sbjct: 378 IALDNIDEVVRLIRASAT---PAEAKAGLMQRFELSEVQSQAILDMRLHRLTNL-ERDKL 433 Query: 736 ISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + A++ + R + + S + +E + +E ++L Sbjct: 434 LEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDL 493 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E+ ++T++ G+ KRT ++ R GKG+ +V++ + + L ++ + Sbjct: 494 IPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGANVAQKDFVTDL---MTGTNHQYL 550 Query: 854 ILVSDKGTLIRVPVNEI---RIASRATK-------------------------------- 878 +L ++KG + ++ V +I R +R T Sbjct: 551 LLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYVATVLCMKDFDANHSFLFAT 610 Query: 879 -------------------GVVIFSTAKDERVVSVERIRESEIV 903 G++ + + +++V + E + Sbjct: 611 KKGMVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREVDEESEI 654 >gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S] gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi] gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S] gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] Length = 839 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 348/910 (38%), Positives = 515/910 (56%), Gaps = 92/910 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +E I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR + MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECR+ A ++ ++ DTVDF PNYDG QEP VL +R PN+LVNG G Sbjct: 121 GNDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + +DN + L+A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +RGV IE++ QIV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+V+ +KR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV++RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL ++L RL L R I + Sbjct: 421 GLM--------------------------DLLTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I+K EL + ++ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRQIVKDELSEIVEKYGDDRRTRIIAADGDVTDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ ED V + F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTRTDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ E+I +I+ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIQSIIHIKSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 632 LVKKSRLADFDSNRSGGIVAINLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ + D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNQDDELLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT D+ R GKG+ Sbjct: 723 -------------------------YLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+D++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 P--KRGTLVGAVIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIV 903 + R + Sbjct: 816 IARNADEPEE 825 >gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] Length = 804 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 365/888 (41%), Positives = 531/888 (59%), Gaps = 85/888 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M+Q G+ N+K+ K Sbjct: 2 SQVLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A + GEV+ KYHPHG+ A+YDA+ R+AQDW+LR L++GQGNFGS+DGDP AA RYTE Sbjct: 62 SAGVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL + A LL D+ K+TVDF+PN+DG+ EP VL A +PN+LVNG GIAVGMAT++P H Sbjct: 122 RLSQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+D VA+ID P+I LD +M + GPDFPTG + + GI+ AYATGRGS+ +R Sbjct: 182 NLSEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGRLH-KGGIREAYATGRGSLKLRAK 240 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E+ R +VVTEIPYQVNKA ++ +IA LV+ K+I DIA LRDESDRQG R+ IE Sbjct: 241 VRQEE-KNGRVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIE 299 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA+ DV+LNQL+++T+LQ+ F+VNM+A+ +P L+ +++ ++ R +VV RRT Sbjct: 300 LKRGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGEPRVLPLLELMRHYLEHRRQVVTRRT 359 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA +RAHVL GL IA+ NLDEV+ +IR S + A+ L+ R Sbjct: 360 RFELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIAR------------- 406 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+EVQ +AIL++RL RLTGL R+ I+ E L I IL Sbjct: 407 -------------FGLTEVQAQAILDMRLQRLTGLEREKIQAEHRELQETIAYLRAILED 453 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +RL G++K+ELL+VK+ RRT I E ED I E MV+T++ G++KR PL Sbjct: 454 EARLWGVVKEELLAVKERHGDTRRTVINEFAGGFNPEDLIEDEPMVITMTAAGFLKRTPL 513 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG G +DED T LF+ + H +LFF++ G VY+EKV+ LP S QA Sbjct: 514 EAYRAQGRGGVGVQASRSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQA 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG + +IL L + E + T++ + VFAT+ G +++ + ++ + SG Sbjct: 574 RGVHIRSILPLAEDEEVATLLSVRGLTI---PGHFVFATRRGLIKKTPIREYQNLTASGL 630 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L D ++ V ++ +++L T+ GQ +RF ++ +R GR S GVRG+ L GD Sbjct: 631 IAINLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRA-TGRASQGVRGVRLKDGD 689 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ +V Sbjct: 690 EVVSLIVVPKGWT----------------------------------------------- 702 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V +G+GKRT ++ R G G+ + ++G L A+ V ++ + Sbjct: 703 ----GDLLAVGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTP--KVGQLAALLAVEGDEDL 756 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++S +G IR V+++ SRAT GV I + +++ + + IR + Sbjct: 757 LVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804 >gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] Length = 847 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 359/891 (40%), Positives = 542/891 (60%), Gaps = 86/891 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCAR+ Sbjct: 2 KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARV 61 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD AA RYTECRL K Sbjct: 62 VGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSK 121 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNLGE Sbjct: 122 MGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGE 181 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG +V+R + IE Sbjct: 182 VIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAEIE 241 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQG R+V+++KR Sbjct: 242 SDES-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKRD 300 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RR ++ L Sbjct: 301 ANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQFDL 360 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA++RAH+L L A N+DEVVRIIR S P A++ L +R Sbjct: 361 KKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKR----------------- 403 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 E+Q++AI+++RL++LTGL D + E L IK+ +IL++ R Sbjct: 404 ---------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERC 454 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ ++ Sbjct: 455 KEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFK 514 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G+A Sbjct: 515 EQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRA 574 Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+LSL G+ + + +D+ ++ YVVFATK G V++ L + + +G IA Sbjct: 575 IQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIA 634 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733 + ++ DE++ V N++++ + G+ RF S IR GR S GVRG+ L D Sbjct: 635 ININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDDDGQD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ M +V Sbjct: 694 EVVGMIVVNDPVK----------------------------------------------- 706 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LVA+ V D++ + Sbjct: 707 ----ETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903 ++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ SE+ Sbjct: 761 MIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEME 811 >gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191] gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191] Length = 840 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 369/913 (40%), Positives = 540/913 (59%), Gaps = 83/913 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E S + I S I +EM+ SY+ YA++VI+GRA+PD+RDGLKP+HRR+L+GM Sbjct: 1 MSEKENQSVDLF-GNIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+++NK + K AR+ G+VMGKYHPHG++AIYD+L R+AQD+SLR L++GQGNFGSV Sbjct: 60 NEMGLKYNKSFKKSARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL++ A +L+D+ K+TV F NYDGS QEP VL A+ PN+LVNG Sbjct: 120 DGDMAAAMRYTEVRLERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNL EV D + VI NP + LM II+GPDFPTGA+I GR GI + Sbjct: 180 GIAVGMATNIPTHNLSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIICGRKGIFDY 239 Query: 241 YATGRGSIVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 + TG+GS+ ++ + IE+ G R IVVTEIPYQVNK ++E IA LV++K++ DIAD+ Sbjct: 240 FETGKGSVKVQARAEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADI 299 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G R+VIE+KR A V+LN LY++T LQ+ FSVNM+A+ +P + ++K Sbjct: 300 RDESDRRGMRLVIEVKRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGRPRILPIKEVMK 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 +V R+EVV RT++ LNKA+ R H+L GL IA+ANLD+V++IIR + +P A+ Sbjct: 360 CYVKHRKEVVTARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAK----- 414 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 LSE Q++AIL++RL +LT L I E Sbjct: 415 ---------------------FALIREFALSEPQSQAILDMRLHQLTQLSSASIEKEQKE 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDM 538 L I E IL ++L II EL +K + T R+T I DM ED I ED+ Sbjct: 454 LLALIAELKGILEDPQKVLAIIVDELKGLKKDYGTERKTEISNTELSDMTMEDLIEEEDV 513 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+T+S+ GY KR+PL YR Q RGGKG G ++EDF+ LF+ STH ++L F++ G V Sbjct: 514 VITLSNDGYAKRIPLDTYRTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRV 573 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNV 657 + + + +P G+ ++GKA++N+L ++ E+IT+ + + + + Y+ T+ G + Sbjct: 574 FSLRAYEIPEGNRLSKGKAIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLI 633 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R +L DF I +SG IA+ L+ D + SV+ ++D+++ T+ G+ +RF IR Sbjct: 634 KRVELGDFANIRKSGIIAIGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAM- 692 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRGI L K D V+ M Sbjct: 693 GRQAKGVRGIRLGKDDIVVGM--------------------------------------- 713 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L+V E G+GKRT ++R NR G G ++ N Sbjct: 714 -----------EHALKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERN- 761 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V + V+++ ++++++ G +R+ EIR R +GV + A+ +++ + + Sbjct: 762 -GKVVGIKLVDESKDLMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARIAPV 820 Query: 898 RESEIVDEAESTE 910 + + E Sbjct: 821 IKDNDEEACGGEE 833 >gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] Length = 842 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 359/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ALM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 86/212 (40%), Gaps = 18/212 (8%) Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYM 755 G RF ++ I+ S + + L + DQ+ + + A +E + Sbjct: 405 SGLMERFELTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVND 458 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 + + + ++ + S + + E ++ ++ I+T+S G+ KRT Sbjct: 459 ELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLS 518 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +FR NR G G + ++ + + ++P ++ ++ + KG + V EI ++ Sbjct: 519 EFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904 +KG I + D+ V + R++ D Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 63/504 (12%), Positives = 173/504 (34%), Gaps = 33/504 (6%) Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338 + E I V + V I + + + R I ++D I + + ++ Sbjct: 343 NLKELIKYFVEHRHDVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPND 402 Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398 + ++ I++ + ++ + + + + L + + Sbjct: 403 AISGLMERFELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCR 462 Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY----LSEVQT 454 +V++ + + +++ + DD S LSE + Sbjct: 463 KVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRA 522 Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514 + + D + + + + + + K+ + Sbjct: 523 QNRGGVGSKGTETRDEDFVEHIYPATMHN--TMMFFTQKGKCYWLKVYEIPEGTKN---S 577 Query: 515 PRRTRIVEGLLDME------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 R +D + ++ + V+ + G +K+ L Y R+ Sbjct: 578 KGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQN 637 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G + + +R++D V ++ + + + ++ + G + + + A G + L Sbjct: 638 G--VNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMT-L 694 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + + + ++ + ++ ++ G +R+ + D+ + NR GK ++ D Sbjct: 695 DEDGQDEVVGMICIKD----PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITD 750 Query: 683 EI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738 + +++++ T END+++ K G +R ++ +R+ GR + GVR I+L K D++ S+ Sbjct: 751 KTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDEIGSV 809 Query: 739 AIVLHADADYDERICYMKHMSAQR 762 V + + Sbjct: 810 CKVTSETEEDIITEEDENISETPQ 833 >gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4] gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4] Length = 875 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 360/910 (39%), Positives = 517/910 (56%), Gaps = 96/910 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + E I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M Sbjct: 1 MTETLPP----EHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WSLR LI+GQGNFGS Sbjct: 57 FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSS 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L D+ +DTVDFR NYDG QEP VL +R+PN+LVNGG Sbjct: 117 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G V ++NP+ D L+ I+GPDFPT A+ILG +G Sbjct: 177 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V +E+ + R +VV+E+PYQVN ++E IA LVR+ +I I Sbjct: 237 IEDAYRTGRGSIRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGI 296 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+ DES+ R G R+VI +KR A A V+LN L+++T LQ F VNM+AL P L Sbjct: 297 ADIADESNSRSGMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDDVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I++ +V + +V+VRRT++ L KA +RAH+L GL A+ LDEV+ +IR SP+ + AR Sbjct: 357 QIIRHYVKHQVDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARP 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL+++L RL L R I + Sbjct: 417 GLMS--------------------------LLEIDEIQATAILDMQLRRLAALERQRIID 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 L + +EI + DIL R II+ EL+ + D+ RRT+I+ D+ ED I + Sbjct: 451 TLAEIELEIADLKDILEKPERQRSIIRDELMEIVDKYGDDRRTQIIPFDGDVSVEDLIAQ 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 511 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ E+I ++ P E Y+V ATK G Sbjct: 571 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDEQIAQVIEIPNYEV---APYLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G IA+ L DE++ E+D+LL + GQ +RF + + Sbjct: 628 LVKKTKLTDFDSNRAGGLIAINLREGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEAL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ GD+++ +++V Sbjct: 688 RPM-GRPTSGVLGMRFNDGDELLGISVVKP------------------------------ 716 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++F+L ++ + KRT D+ + R GKG+ Sbjct: 717 -----------------------DKFLLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQ-- 751 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ G LV V+++D++ ++ G +IR P ++R A R TKGV + + +++ Sbjct: 752 HDSKRGRLVGALIVDEDDELFAITSSGGVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLA 811 Query: 894 VERIRESEIV 903 V R + Sbjct: 812 VARNADEGSD 821 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 13/226 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ L+ + + R GG + +R+ D + + + +L S+ G Sbjct: 618 PYLVLATKRGLVKKTKLTDFDSNRAGG--LIAINLREGDELMGAVLAAAEDDLLLVSAGG 675 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + N G+ + I + +++ AT Sbjct: 676 QSIRFHATDEAL-RPMGRPTSGVLGMRFNDGDELLGISVVK------PDKFLLVATDGAY 728 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + D+ R GK + + + + +++++ T G +R P + Sbjct: 729 AKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGALIVDEDDELFAITSSGGVIRTPARDV 788 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 R AGR + GVR ++L G ++++A +D + Sbjct: 789 R-KAGRQTKGVRLMNLGDGTTLLAVARNADEGSDVANGGEEASDAA 833 >gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9] gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9] Length = 973 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 388/943 (41%), Positives = 563/943 (59%), Gaps = 45/943 (4%) Query: 6 ISSDEEEEKGI--------TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 D+ + + TS++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL Sbjct: 31 TPPDDPKYGQVQGRGALIMTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRIL 90 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 +GM +MG+++NKKY K A++ G VMG YHPHG++AIYD + R+AQ +SLR L+++GQGNF Sbjct: 91 YGMQEMGLQFNKKYTKSAKVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNF 150 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GSVDGD PAA RYTE RL + A +L D+ DTVDF PNYD S EP VL AR PN+++N Sbjct: 151 GSVDGDSPAAMRYTESRLTRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIIN 210 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILG 233 G GIAVGMATNIP HNL EVV C++++ + DL+ +++ + GPDFPTG + G Sbjct: 211 GSSGIAVGMATNIPPHNLTEVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLFG 270 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 RT I AY TGRG ++R HIE SG R+ IVV EIPYQVNK+ ++E+IAELV E I Sbjct: 271 RTNIPQAYRTGRGRFMMRAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGII 330 Query: 294 VDIA--DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 DIA + RDESDR G R+VI +KRGA ++LNQL+++T +Q FS+ +A++ +P+ Sbjct: 331 TDIARDEFRDESDRDGMRIVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQPKE 390 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L ++AF+ R EVV RRT +LL KARDR +L+GL IA+ +LD+V+RIIR S + Sbjct: 391 LPLDKAIRAFLDHRIEVVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRA 450 Query: 412 TARRELMQRSWNASDIKDLID----------------LIDDSSYTIGSDGTMYLSEVQTR 455 AR L N + + LI G+ T+ L+ Q Sbjct: 451 DARENLFAYFSNRTITLRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQID 510 Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515 AILEL+L RLT L D++ EL + I E IL+S ++L +I EL ++D+ P Sbjct: 511 AILELQLYRLTQLSIDELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDP 570 Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 RRT I++ ++ ED I E + VTVS+ GY+KR P+S YR QRRGG GR G+ RDED Sbjct: 571 RRTIILDETAELGLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDED 630 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635 FV L I STH +L F++ G VY K++ +P +GKA+ +++ L GE++ TI+P Sbjct: 631 FVAQLIIESTHAYLLCFTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILP 690 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695 N ++FAT++G V++ L DF + G IA+ +D DE+++ T + Sbjct: 691 VKNLTEEGKN--ILFATRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDV 748 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 + L T G +RF +R GR + G RGI+L KGD VI A+ +A +R Sbjct: 749 VFLATHDGMAIRFNEQDLRPM-GRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERA 807 Query: 756 KHMSAQRRLISGDTE----------EITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + +L TE + + + V ++ ++L L ILTVSE Sbjct: 808 EALGLLAQLEDAITEATDASLVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSE 867 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 GFGKRT +R+ +R G G+ + G + ++ V+D +++L+S G +IR+ Sbjct: 868 NGFGKRTDVDRYRLQSRGGTGVINMKTGT--KTGKVTSISLVDDTTEMMLISQFGKIIRI 925 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++R A R+T GV + +D++V + I + ++ E+ Sbjct: 926 DTKQVRAAGRSTSGVKLLDLDQDDKVAAAMTIPPEDPKEKLEN 968 >gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] Length = 848 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 361/908 (39%), Positives = 548/908 (60%), Gaps = 86/908 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNPDI D LME I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE ++IVVTEIPY VNK ++E IA+LV+E +I I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIESDES-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RR ++ L KA++RAH+L L A N+DEVV +IR S P A++ L +R Sbjct: 362 DVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEER------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 E+Q++AI+++RL++LTGL D + E L IK+ Sbjct: 416 --------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL + R ++K EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILDNPERCKEVMKAELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G RD+DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+LSL+ G+ + + ++E ++ +VVFATK G V++ L Sbjct: 576 PEGDKNSKGRAIQNMLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V +N++++ + G+ RF S IR GR S GV Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L + D+V+ M +V Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LV Sbjct: 718 --------------NETVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNIT--DKTGRLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 A+ V D + +++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ SE Sbjct: 762 AIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821 Query: 902 IVDEAEST 909 + + E Sbjct: 822 MESQVEEE 829 >gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 835 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 380/907 (41%), Positives = 567/907 (62%), Gaps = 88/907 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + + I +I++EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ Sbjct: 1 MEDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGM 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEV+GKYHPHG+ A+YD++ RMAQ++S R +LI+G GNFGS+DGD Sbjct: 61 TSDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K + L+ D+ K+TVDF NYDG +EPVVL +R+PNVLVNGG GIAVG Sbjct: 121 AAMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATG 244 MATNIP HNLGEV+D +A+IDNPDI + LM + I GPDFPTGA++LGR+GIK+A+ TG Sbjct: 181 MATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETG 240 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RGS+V+R IE+ + +I+++EIPYQVNKA ++EKIA LVR+K I I DLRDES+ Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G R+V+EL+R A+V+LNQLYR T+LQS F VNM+AL +PE L+ +L + Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + E+V RRT++ L KA DRAH+L GL IA+ ++DEV+ IIR S + A L + Sbjct: 361 QIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNE----- 415 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 L+E+Q++A+L+++L RLTGL RD + NE N L I I Sbjct: 416 ---------------------AFDLTEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILI 454 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + DIL++ RLL IIK EL+ +K + RR+ IVE +DM DED I ED+VVT++ Sbjct: 455 VDLKDILANHDRLLTIIKDELIEIKTKFGDDRRSEIVEADIDMLDEDLIPVEDIVVTMTM 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR + + Q RGGKG G+ DED V +STH +L F++LG VY+ + + Sbjct: 515 NGYIKRTTVDSFNTQNRGGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGF 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S ++G ++N+L+L +GE + T++ +D+ + Y F TK G V+R ++ + Sbjct: 575 NVPSSSRTSKGIPVVNLLNLTEGETVKTLVKVAKDD---ESKYAFFVTKQGIVKRVEVQE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I ++GKIA+ L DE++ V +N+I++ G+ VRF + +R GR + GV Sbjct: 632 FESIRQNGKIAITLREDDELVGVRMTNGDNEIIIGGSNGKAVRFDENEVRSM-GRTASGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G ++ +G +V+ +A Sbjct: 691 IGFNVDEG-EVVGIA--------------------------------------------- 704 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + Q+IL V+EKG+GKRT ++R + R KG++ ++++ N G LV++ Sbjct: 705 --------TDREGQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKN--GNLVSL 754 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIV 903 VN +++ +++S++GT+IR ++ I I R+T GV + + + + V V ++ + E Sbjct: 755 RAVNGDEEALIISNEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAILQPTVEEP 814 Query: 904 DEAESTE 910 DE ++T+ Sbjct: 815 DEEQTTD 821 Score = 61.7 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 16/230 (6%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VKRV + + + R+ GK + +R++D + + + + ++ S G Sbjct: 616 FFVTKQGIVKRVEVQEFESIRQNGKI--AITLREDDELVGVRMTNGDNEIIIGGSNGKAV 673 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + + A G N + Y++ T+ G +R Sbjct: 674 RFDENEVRSMGRTASGVIGFN----------VDEGEVVGIATDREGQYILAVTEKGYGKR 723 Query: 660 NKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 ++++ + R K ++ ++S+ + + L+ + G +R IS I Sbjct: 724 TDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVNGDEEALIISNEGTVIRTEISNI-GI 782 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR+++GVR I++ + D V +AI+ + DE + + I Sbjct: 783 YGRSTIGVRLINVGETDSVSQVAILQPTVEEPDEEQTTDQVEPVNEKEIE 832 >gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A] gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A] Length = 854 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 357/906 (39%), Positives = 551/906 (60%), Gaps = 63/906 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ K + Sbjct: 4 PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R L++G GNFGS+D DPPAA RYT Sbjct: 64 RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYT 123 Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL+ + LL D+ +TVDF N+DGS +EPVVL +R P +L+NG GIAVGMATNI Sbjct: 124 ECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DG +A+I NP+++ L++II GPDFPTG ILGR+GI AY TGRGSI + Sbjct: 184 PPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITM 243 Query: 251 RGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 RGV+ IE + +R+ I++T++PYQ NK+A++E+IA++V +KRI I+D+RDESDR+ Sbjct: 244 RGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDRE 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A + V+LN +Y+ T +Q+ F NM+AL +P+ TL L F++FR Sbjct: 304 GMRIVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRV 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 E ++RR+KY L KA +R H+L GL IA+ +LD ++ IIR + + TA+++L+ + Sbjct: 364 ETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQ------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+VQ AIL+++L RLT L + I E L I+I Sbjct: 418 --------------------FELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIAN 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DILS + R+ II++EL+ +K+ TPR T I+ ++ D D I E ++ ++ G Sbjct: 458 LNDILSKKERIEAIIEEELVQIKNIHGTPRCTEIIHDEGEIVDTDLIANEQAIILLTEQG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+S + AQ+R +G++G +++ D V H VL FS G VY +++ Sbjct: 518 YIKRMPVSSFDAQQRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S +RG ++ +LS+++ E+IT+I+ E + ++++V T+ G +++ LS F Sbjct: 578 PSSSRTSRGVPIVQMLSISKSEKITSIISVSEFK---EDIFLVMLTRQGYIKKTALSAFS 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 I +G IA+ L D++ V +E+ ++L T+LG + F +R GR + GV Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPL-GRATRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L K D++ISM I+ + T + +++ V Sbjct: 694 KSMRLKKKDELISMDILS-----------------------AQVTIGVEESQDNEEVLEI 730 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 EE ++ +IL ++ KG+GKR FR+ R+G G+RA + L ++ Sbjct: 731 EPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGMGVRAIKF--KSGKDNLTSL 788 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VN D++++VS++G +IR V I + SR+ GV + +D+ + +V + + Sbjct: 789 RVVNAEDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAAVALVPPV-PEE 847 Query: 905 EAESTE 910 + E+ E Sbjct: 848 DGENEE 853 >gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] Length = 842 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 358/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID+++LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 86/212 (40%), Gaps = 18/212 (8%) Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYM 755 G RF ++ I+ S + + L + DQ+ + + A +E + Sbjct: 405 SGLMERFELTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVND 458 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 + + + ++ + S + + E ++ ++ I+T+S G+ KRT Sbjct: 459 ELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLS 518 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +FR NR G G + ++ + + ++P ++ ++ + KG + V EI ++ Sbjct: 519 EFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904 +KG I + D+ V + R++ D Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 63/504 (12%), Positives = 173/504 (34%), Gaps = 33/504 (6%) Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338 + E I V + V I + + + R I ++D I + + ++ Sbjct: 343 NLKELIKYFVEHRHDVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPND 402 Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398 + ++ I++ + ++ + + + + L + + Sbjct: 403 AISGLMERFELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCR 462 Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY----LSEVQT 454 +V++ + + +++ + DD S LSE + Sbjct: 463 KVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRA 522 Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514 + + D + + + + + + K+ + Sbjct: 523 QNRGGVGSKGTETRDEDFVEHIYPATMHN--TMMFFTQKGKCYWLKVYEIPEGTKN---S 577 Query: 515 PRRTRIVEGLLDME------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 R +D + ++ + V+ + G +K+ L Y R+ Sbjct: 578 KGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQN 637 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G + + +R++D V ++ + + + ++ + G + + + A G + L Sbjct: 638 G--VNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMT-L 694 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + + + ++ + ++ ++ G +R+ + D+ + NR GK ++ D Sbjct: 695 DEDGQDEVVGMICIKD----PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITD 750 Query: 683 EI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738 + +++++ T END+++ K G +R ++ +R+ GR + GVR I+L K D++ S+ Sbjct: 751 KTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDEIGSV 809 Query: 739 AIVLHADADYDERICYMKHMSAQR 762 V + + Sbjct: 810 CKVTSETEEDIITEEDENISETPQ 833 >gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] Length = 842 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 358/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C++ IDN +ID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE S ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 AKAEIETGST-HDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A L++R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YVVF TK+G V++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + D Sbjct: 695 DEDGQDEVVGMICIKDPDT----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + A +E + + + + ++ + S + + E ++ ++ I Sbjct: 444 IQKQIAHLEEILVNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMI 503 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S G+ KRT +FR NR G G + ++ + + ++P ++ ++ + KG Sbjct: 504 ITISHMGYIKRTPLSEFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKG 560 Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 + V EI ++ +KG I + D+ V + R++ D Sbjct: 561 KCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 106/238 (44%), Gaps = 12/238 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 VV + G VK+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVVFCTKNGIVKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PDTETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + GR + GVR I+L K D++ S+ V + + + I+ EE Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEEEIAEEDENISDNSLNEINNKNEE 842 >gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] Length = 865 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 362/894 (40%), Positives = 543/894 (60%), Gaps = 86/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV N+ Sbjct: 2 QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY+K ARI G+V+GKYHPHG++++YDA+ RMAQDWSLR ++GQGNFGS+DGDPPAA R Sbjct: 62 KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K + +L DL K+TVDF+ N+D S QEP V+ + PN+LVNG GIAVGMATN Sbjct: 122 YTEARLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E VD A IDN +I +D LM+ I PDFPTG +I G G+++A+ TGRG +V Sbjct: 182 MAPHNLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGIIYGYDGVRDAFHTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + ++ +R I+VTEIPYQVNKA M+ + AELV++++I I ++RDESDR+G R Sbjct: 242 LRAKVNFDEIG-NRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V ELK A +V+LN LY+YT+LQ+ FSVN +AL +PE+ L I+ FV R EV+ Sbjct: 301 IVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVHGRPEQLNLKDIIHHFVEHRHEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VRRT++ L KA++RAH+L G LD + IIR S NP+ A+ L++ Sbjct: 361 VRRTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIE------- 413 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +AIL+LRLARLTG+ D IR+E +++ EI Sbjct: 414 -------------------AFELSDIQAQAILDLRLARLTGMELDKIRDEYDAIMKEIAN 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL++ R IIK+ELL +K++ RRT I +M ED I E +V+T+SH G Sbjct: 455 LEDILANEPRRFQIIKEELLEIKEKYGDERRTEIDYSGGEMSIEDIIPNESVVLTISHAG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR LS Y+ Q RGG G RD DF+ + + H +LFF+ G Y +V+ + Sbjct: 515 YIKRTSLSEYKIQSRGGVGNKAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEI 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664 P GS A+G+A+ N++++ ++I + D N + VV TK+G +++ L Sbjct: 575 PEGSKTAKGRAVQNLINIEPDDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEA 634 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+++ D++L + I++ TK G+C+RFP +R GR S+GV Sbjct: 635 YSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQIMIATKNGKCIRFPEEKVREV-GRGSIGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD+ I M +V + Sbjct: 694 RGILLEDGDEAIGMIVVNDVE--------------------------------------- 714 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L VSEKG+GKRT+ D+RI+NR GKG+ ++++ + G L+A+ Sbjct: 715 ------------NETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITE--KTGNLIAI 760 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V D D +++++ G IR+ ++E+R+ R T+GV + + K++ + ++ ++ Sbjct: 761 QNVTDEDGLMIINKSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDEIAAIAKVE 814 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 109/247 (44%), Gaps = 13/247 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + VV V+ G +K+ L Y R G + + +RD D + ++ + ++ ++ Sbjct: 612 YVNQMSVVMVTKNGTIKKTSLEAYSRPRVNG--VNAIEIRDNDQLLGAYLTNGNSQIMIA 669 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + ++ + G + + L G+ ++ + N V+ + Sbjct: 670 TKNGKCIRFPEEKVREVGRGSIG---VRGILLEDGDEAIGMIVVND----VENETVLVVS 722 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 + G +R + D+ NR GK + L+ ++ ++++ T E+ +++ K G +R Sbjct: 723 EKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMG 782 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +RV GRN+ GV+ I+L K D++ ++A V ++ + + + Sbjct: 783 MDEMRVM-GRNTQGVKLINLKKNDEIAAIAKVEMDKDVEEDSEELEETEEGVVGSLFDNQ 841 Query: 770 EEITSLK 776 E+ T+ + Sbjct: 842 EDNTAPQ 848 >gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680] Length = 811 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 373/895 (41%), Positives = 542/895 (60%), Gaps = 85/895 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + + + I E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + G+ K Sbjct: 2 QASQTKVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K A + G V+G+YHPHG+AA+YDA+ RMAQD+S+R L++G GNFGSVDGD PAA R Sbjct: 62 PHRKSANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A +L D+ KDTVDFRPNYD + QEPVVL AR PN+L+NG GIAVGMAT+ Sbjct: 122 YTEARLTALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATS 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV+G + +++NP+ +D LM I+GPDFPT +I+G G++ AY TGRGS+ Sbjct: 182 IPPHNLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ G R IVVTEIPY VNKA ++E+IAELV+EK+I I DLRDESDR+G R Sbjct: 242 VRGRCEIEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V++++R S VILN+LYR T LQ F + ++AL +P+ L +L ++ R EV+ Sbjct: 302 IVMDIRRDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L ARDR H++ GL IA+ NLDEVV IIR SP+ +TAR LM R Sbjct: 362 RRRTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E+Q AI+E+RL +LTGL R+ + E L I + D Sbjct: 413 -----------------FDLTEMQAEAIVEMRLRQLTGLERNKLEEEYRELVGRISDLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL R+ IIK++L+ +K RRT I E E ED I E +VVT+S+ GY+K Sbjct: 456 ILRRPERVQAIIKEDLIDIKTRFGDKRRTEIREEDASFEAEDLIEEESIVVTLSNRGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS YR+QRRGGKG +G +R EDF TD+F+ +T +++LFF++ G VY K +++P Sbjct: 516 RQPLSTYRSQRRGGKGVTGTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q+RG +IN L LN GE++ T++ + ++V AT+ G V++ + +F QI Sbjct: 576 SRQSRGTPVINFLRLNPGEKVNTVISVNRFD---AGQHLVMATRTGMVKKVPIDEFRQIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 RSG IA+ L ++DE++ V+ + + ++L T G + F +RV GR + GVRGISL Sbjct: 633 RSGIIAINLRNQDELVGVQKIYKGDRLVLVTGRGYSIVFDEGDVRVM-GRGAAGVRGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+VI + Sbjct: 692 EQGDKVIDID-------------------------------------------------- 701 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +L V+E+G+GKRTS + R+ R GKG++ +S+ + G LV V Sbjct: 702 ---KYKEGADMLLVTERGYGKRTSLQELRLQKRGGKGLKTIQISE--KTGELVGGKAVFP 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++ + ++ G +IR+ V+++ R ++GVV+ ++ +VS+ R + + + Sbjct: 757 KEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIARFKSEDEEE 811 >gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] Length = 842 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 357/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE S ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 ARAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A ++LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 103/229 (44%), Gaps = 12/229 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR 762 + GR + GVR I+L K D++ S+ V + + + + + Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEELIEEGEENTLESPQ 833 >gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 840 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 352/913 (38%), Positives = 545/913 (59%), Gaps = 95/913 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I D+M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N Y Sbjct: 3 EGEKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQDW++R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+++ A +L D+ K+TVD R N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA ++N +I +D L+E I+ PDFPTG I G G++ A+ TGRG I+IR Sbjct: 183 PHNLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIYGYDGVREAFKTGRGRIIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +H E+ +R+ I+VTEIPYQVNKA M+++ A+LV+E ++ IAD+ DE+ + G R+V Sbjct: 243 GKAHFEEVD-NRDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ A +V+LN L+++T LQS FSVN +AL +PE+ L ++ FV R +VV R Sbjct: 302 YVLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNGRPEQLNLKDLIYHFVEHRHDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KA+++AH+L G LD + IIR S NP+ A+ EL++ Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKE-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q++AIL+LRLARLTG+ + IR E + I + Sbjct: 414 ------------------FELSEIQSQAILDLRLARLTGMELNKIREEYEQIMALIMDLE 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK EL+ VK + RR+ I D+ ED I E +V+T+S+ GY+ Sbjct: 456 DILAHKERRTEIIKNELIEVKAKYGDDRRSIIEYSGGDISMEDIIPNEQVVITISNAGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P++ Y+ Q RGG G+ RD+DF+ LF+ + H +LFF+ G + +V+ +P Sbjct: 516 KRTPVNEYKTQARGGVGQKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +G+A+ N+++++ + + + + D+ N+ YV+ ATK G +++ L + Sbjct: 576 GGRNTKGRAIQNLINIDSEDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G +A+ + DE+L T + +++ K G+ +RFP +R GR+ GVRG Sbjct: 636 RPRQNGIVAITIKEDDELLEARLTTGSSQVMMAVKSGKAIRFPEEKVRSV-GRSGSGVRG 694 Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 IS K D+VI M + + Sbjct: 695 ISFDDEKNDEVIGMITIENP---------------------------------------- 714 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINE 837 KE+ +L VSE G+GKRT D +RI+NR GKG++ +++ + Sbjct: 715 -----------KEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITE--K 761 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA+ V+ D +++++ G IR+ V +R+ RAT+GV + + +++ + +V ++ Sbjct: 762 TGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKV 821 Query: 898 RESEIVDEAESTE 910 + + + E Sbjct: 822 MKEDDNEIDSGEE 834 >gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716] Length = 836 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++E IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GS Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EE Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ + R+ II EL+ ++++ RRT + + ++EDED I ED++VT++H G Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + + Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINIAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L GD +I A + Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ +L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905 V ++ +++V+DKG +IR V + R+ GV + D V ++ ++ + + Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818 Query: 906 ----AESTE 910 AE E Sbjct: 819 TEASAEEAE 827 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 17/231 (7%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VKR P++ ++ R G + + + D + ++ IV +++ + LG Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV + A A + L G+ + P ED+ V+ ++ G ++ Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725 Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 S++ I G + +K + + + T + D+++ T G +RF + ++ Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR+++GV I + V +M V A+ D + + Sbjct: 784 QTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 834 >gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] Length = 930 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 373/939 (39%), Positives = 540/939 (57%), Gaps = 101/939 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M + ++NK Y Sbjct: 2 SESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR +++GQGNFGS+D DPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K H +L DL KDTVD+ NYDGS + P VL AR PN+L+NG GIAVGMATN+ Sbjct: 122 VRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A +NP I + LM I GPDFPTG +I GR GI +AY TG+G + +RG Sbjct: 182 HNLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIYGRAGILDAYRTGKGRLHVRG 241 Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IE S DRE+IV TE+PYQ NKA ++E+IAELVR+K+I I+++RDESD+ G Sbjct: 242 RYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDKDG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+E Sbjct: 302 MRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKAR R H+L GL +A+AN+DE++ I+ S N AR L+ W + + Sbjct: 362 VVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGSGSV 421 Query: 428 KDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 ++ S + + LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E L EI IL +L+ II E++ ++D RRT I++ +D ED Sbjct: 482 LTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+ Y AQ+RGGKG+S M+++D + L + STH +VL F Sbjct: 542 IPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------- 638 + G V+ + + +PI S ARG+ L+N++ L+ E +TTI+P P+ Sbjct: 602 TDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVEELSVKGETSST 661 Query: 639 ------------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 D + +V FAT +G V+R +L F I +G IA+ L+ D+++S Sbjct: 662 DALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVS 721 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 +++L G+ +RF + R GR + GVRG+ L + + S+ ++ Sbjct: 722 ARITNGSQEVMLFASSGKAIRFNENDARAM-GRTAKGVRGMRLTADEFIKSLVVIEDDVR 780 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + IL E Sbjct: 781 E----------------------------------------------------ILIACEN 788 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 GFGKRT +F NR G G+ A S N G LV V D IIL+SDKGTL+R P Sbjct: 789 GFGKRTFIDEFNTQNRGGGGVIAIKTSARN--GELVRATKVEPEDDIILISDKGTLVRTP 846 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V + + R T+GV + +KDE++V++ R+ E +E Sbjct: 847 VQHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNE 885 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 14/258 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 V + G VKRV L + R G V + + D + I + V+ Sbjct: 676 TQAEPPFVFFATANGTVKRVELKQFANIRSNG--LIAVGLEEGDKLVSARITNGSQEVML 733 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F+S G + A+G + + L E I +++ +D ++ A Sbjct: 734 FASSGKAIRFNENDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDDVRE-----ILIA 785 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708 ++G +R + +F NR G + + E++ E+DI+L + G VR Sbjct: 786 CENGFGKRTFIDEFNTQNRGGGGVIAIKTSARNGELVRATKVEPEDDIILISDKGTLVRT 845 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P+ + +GRN+ GV I L+K +++++MA V H + D + + + + + Sbjct: 846 PVQHVAS-SGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNELIDAMKEDGTFEVKGQEQM 904 Query: 769 TEEITSLKNDSSVEGNIS 786 + + + S Sbjct: 905 DVDAANSDATETYFDEAS 922 >gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] Length = 857 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 368/896 (41%), Positives = 542/896 (60%), Gaps = 85/896 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ + +K Y KCAR+ Sbjct: 2 KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARV 61 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL K Sbjct: 62 VGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSK 121 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 ++DDL KDTVD N+D + QEP V+ R PN+LVNGG GIAVGMATN+PTHNL E Sbjct: 122 MGEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLRE 181 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V++GC A IDNP+I+LD LM+ I+ PDFPTGA I G G+K+AY TGRG I+IR + IE Sbjct: 182 VIEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIYGLQGVKDAYETGRGRIIIRAKAEIE 241 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 ++IVVTEIPY VNK ++E IA LV+E ++ I+++ DES RQG R+VI++KR Sbjct: 242 SDES-HDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKRD 300 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTK+ L Sbjct: 301 ANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKFEL 360 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 361 KKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKR----------------- 403 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L +Q++AI+++RL++LTGL D + E + L I +ILS Sbjct: 404 ---------FDLDNLQSKAIVDMRLSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELC 454 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++K EL VK++ RRT+I+ + ED + +V+TVSHLGY+KR PLS +R Sbjct: 455 KKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFR 514 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGG G G RD+DF ++ + H ++LFF+ G Y K + +P G+ ++G+A Sbjct: 515 EQARGGVGSKGATHRDQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRA 574 Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+L+++ + I I+ DE N+ YVVFATK+G V++ L + + +G IA Sbjct: 575 IQNLLNIDSDDAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIA 634 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ- 734 + + DE++ V EN++++ + G+ VRF + +R GR + GVRG+ L GD Sbjct: 635 INIAEGDEVVDVRLTNGENELIMANRNGRAVRFDENTVRTM-GRTATGVRGMRLDDGDDA 693 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M +V Sbjct: 694 VVGMIVVNDPV------------------------------------------------- 704 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + ++ VSE G+GKR+ D+R +NR GKG++ ++ ++ G LVA+ V D++ ++ Sbjct: 705 --NETVMVVSENGYGKRSLVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDLM 760 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAEST 909 +++ G IR+ V+E R+ RAT+GV + + K++ + SV + SE+ E Sbjct: 761 IINKSGITIRLAVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSELEASLEED 816 >gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] Length = 842 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 363/882 (41%), Positives = 529/882 (59%), Gaps = 47/882 (5%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRLQ + LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG VA+I NP+I Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR----EQIVV 268 LM+ + GPDFPTGA ILG + IK AY TGRGSI +RG++ IE E I++ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR G R+VIELKR + V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQ+ F NM+AL +P+ TL L F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+A+LD ++ +IR +P+ TA+ EL+ + Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELI--------------------------NSYG 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSEVQ AIL+++L RLT L D IR E L ++I + DIL R R+L II+ E + Sbjct: 395 LSEVQADAILQIQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K + TPRRT I +++D D I E +++ ++ GY+KR+P+S + AQ R +G++G Sbjct: 455 KTQFATPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAG 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 ++D+D + H SVLFFS G VY K +++P GS +RG ++ +L + + E Sbjct: 515 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+I+ E + Y+V TK GN+++ L F I +G IA+ L+ D++ V Sbjct: 575 KITSIVSVSEFS---SEEYLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E+ +++ ++ G + F +R GR + GV+ + L GD++I M I+ A Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPL-GRATRGVKSMKLKTGDELIGMDILPAAIL 690 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + M+ + +S + EE ++++ + NI ++L ++ Sbjct: 691 NTLNTDTEMEEEPTEVEELSDNIEETSNIEIATGEPANIL----------GPWVLIITIG 740 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKR FR+ NR+G+G+ AT L + VN +++I++ +++G +IR Sbjct: 741 GYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQS 800 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +N I I SR GV + +D+ + V + E Sbjct: 801 INAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 842 >gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] Length = 805 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 380/887 (42%), Positives = 527/887 (59%), Gaps = 86/887 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILF Q GV +K+VK Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I GEVMGKYHPHG+AAIYDALAR+AQ W+LR L++GQGNFGS+DGDPPAA+RYTE R Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +L D+ K+TVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HN Sbjct: 123 LSPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD VA+IDNP I L+ +M + GPDFPTG + R GIK AYATGRGS+ +R Sbjct: 183 LSEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGGRLS-RKGIKEAYATGRGSLKVRAKV 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ G R +VVTEIPYQVNKA ++ +IA LV+ K+I DI LRDESDRQG R+ IEL Sbjct: 242 RVEE-KGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIEL 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRGA+ V+LNQLY++T+LQS F+VN++A+ +P +L+ +++ ++ R+EVV RR+ Sbjct: 301 KRGANPQVVLNQLYKHTALQSSFTVNLLAIVEGEPRVLSLLDLMRHYLDHRKEVVRRRSL 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA +RAH+L GL IA+ ++DEV+ +IR S + ARR LM+R Sbjct: 361 FDLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMER-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 RL G +K+ELL VK++ RRT + E ED I E MV+T++ G++KR+PL Sbjct: 455 GRLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDLIEDEPMVITLTAQGFLKRLPLE 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ RGGKG ++ED T +F+ H +L FS+ G VY+ KV+ LP QAR Sbjct: 515 AYRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + +L L + E + ++ E Y+VFAT+ G V+R L ++ + G I Sbjct: 575 GVHVKTLLPLAEEEEVAALLAVRGLE---GEGYLVFATERGLVKRTALKEYANLGTGGLI 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 A++L D ++ V E++ +L T GQ +RFP+ +R GR++ GV GI K D Sbjct: 632 AIRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRA-TGRDTQGVVGIRFKKPQD 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ V + Sbjct: 691 RVVSLVTVKPGEMVD--------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L+VS +G+GKRT ++ + R G G+ VS +G L A+ V + + Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVSAR--VGRLAALLKVRGTEDL 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++S KG +R PV EIR SRAT GV I + +++ + S + E Sbjct: 758 LVLSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEEDEIASAFVVEEE 804 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 97/240 (40%), Gaps = 27/240 (11%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++++ +++ + G RF +S + + + + L ++ Sbjct: 378 IALDHIDEVIALIRASED---APAARRGLMERFGLSEAQ------AQAILDMRL---QRL 425 Query: 736 ISMA---------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +++ ++ A + + + + +E + + Sbjct: 426 VALEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDARRTLLTEFEE 485 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++L E ++T++ +GF KR +R R GKG+ A + +E + F Sbjct: 486 SFNPEDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKTKEEDEATHV---FV 542 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903 + +D +++ S++G + R+ V ++ R +GV + A++E V ++ +R E Sbjct: 543 ADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVAALLAVRGLEGE 602 >gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] Length = 824 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 369/907 (40%), Positives = 552/907 (60%), Gaps = 92/907 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 EPNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS+R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKIAMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HN+ EV+D V +IDN D +D ++ II+GPDFPTGA ILG GIK AY TG Sbjct: 182 NIPPHNIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTG 241 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RG I +R V+ IE S + +IVV+E+PY VNKA ++EKIAELV++KRI I DLRDES+ Sbjct: 242 RGKIKVRAVTEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESN 301 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G RVVIEL++ +A++ILN+LY++T LQ F VNM+AL +P+ ++ +L+ ++A Sbjct: 302 REGMRVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYLAH 361 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 +E+VV RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N A+ EL++R Sbjct: 362 QEDVVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR---- 417 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS+VQ +AI+++RL LTGL R+ + +E N L +I Sbjct: 418 ----------------------FGLSDVQAQAIVDMRLRALTGLERERLESEYNELLAKI 455 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+ +LL +IK+E+L V+D+ RRT ++ ++ D I +ED+++ ++ Sbjct: 456 EYFEGILADEKKLLTLIKEEILVVEDKYKDDRRTGFMQDDDMEDE-DLIQKEDIIIAMTK 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 LGY+KR+ + Q RGGKG G+ D+DF+ D+ + +TH + FF++ G VY K + Sbjct: 515 LGYIKRMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P S ARG A++N+L L E+I+ I+P E+ N+ Y+ TK+G +++ +++ Sbjct: 575 KIPEASRTARGIAIVNLLQLQPDEKISAIIP---SEAKSNDGYLFMVTKNGTIKKCQINL 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I ++G A+ L DE++ V+ ++D+++ +K G C+R IR GR + GV Sbjct: 632 FDNIRKNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAV-GRGATGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L GD+VI M + + Sbjct: 691 RGMRLNTGDEVIGMQLASQGE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++L VSE G+GKRT +F++ NR GKGI ++ + G LV Sbjct: 712 --------------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNE--KTGKLVGA 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902 VN++ +I+L++ +G +IR+ V+ I I R GV + + D ++ S+ +IRE + Sbjct: 756 KLVNEDREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREEKN 815 Query: 903 VDEAEST 909 + E + Sbjct: 816 TESDEES 822 >gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] Length = 813 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 344/892 (38%), Positives = 521/892 (58%), Gaps = 83/892 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M + +N+ Y K AR+ Sbjct: 5 IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YDAL RMAQD+S+R +++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TVDFRPNYD S +EP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG + ++D P + ++ +++GPDFPTGA I G G+ AY TGRG+I IRG + +E+ Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGKGLTEAYTTGRGTIKIRGRAEVEE 244 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 D +V+ EIPY +NK++++EKIA L+ + RI ++DLRDESDR+G R+V++LK+G Sbjct: 245 RKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKGV 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L++ F +NM+ + +P + +L+ F+ R +V++RRT++ L Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFDLR 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMER------------------ 406 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLT L R + +E N L I+ IL + L Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLR 458 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G+I+ E+ ++D TPR+T I+E L + D I ED+V+T+S GY+KR + Y+ Sbjct: 459 GVIRDEIKEIQDRYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 518 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G + Sbjct: 519 QKRGGKGIAGVATAGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L +++ E + T + E Y +F T+ G V+R + +G IA+ L Sbjct: 579 ANLLPMDKEEFVATALSIREFS---EERYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGL 635 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+L+V+ E ++LL T+ G RF IS +R GR + GV+GI+L D+V + Sbjct: 636 KENDELLTVKEIDDETEVLLATQQGLSNRFHISGVRP-TGRGAAGVKGIALKGNDRVAAG 694 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ Sbjct: 695 VVITSVSRSE-------------------------------------------------- 704 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +LTVS G+GKRTS + I NR G G+ V+ + G ++ V D+D+++L++ Sbjct: 705 -VLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTP--KTGQVIGAVMVGDDDELLLLTS 761 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +IR+ V+ I RAT+GV++ +++ V+ + + S++ A S E Sbjct: 762 ANKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLDRCAPSGE 813 >gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773] Length = 840 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 356/902 (39%), Positives = 539/902 (59%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NP LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL+A++ + EV+ Sbjct: 303 ISIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKAILEAYLTHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 ---------------DGYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ + R+ +I ELL ++ + RRT + G + +++ ++ E+ V+ T++ GY+ Sbjct: 457 ILAHQERVDQLIYDELLEIQTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ + + ++ Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLHFEGDEKIQTVINVRGEATDSHD-YLFFVTRLGVVKRTAVSEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ +L+ TK G VRF + +R+ GR + GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIM-GRAAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI Sbjct: 695 LRENDLVIGA-------------------------------------------------- 704 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ + +L ++EKG+GK+T + ++ I R GKGI+ +++ N G L + V Sbjct: 705 ---DVVDDTENVLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKN--GVLAGMTIVR 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I++ + +G +IR V + RAT GV + +V ++ ++ D + Sbjct: 760 GDEDIMVTTTQGVMIRFAVASVSQTGRATLGVRLIRLEDGAKVATLAKVEHETTEDVSRE 819 Query: 909 TE 910 TE Sbjct: 820 TE 821 >gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] Length = 834 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 359/898 (39%), Positives = 541/898 (60%), Gaps = 90/898 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM Sbjct: 1 MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV Sbjct: 55 NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++ K A +L D+ K+TVDF NYDG+ +EP VL AR+PN+LVNG Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV++G +++NPDI + LM+ I GPDFPTG V++G++GI+ A Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG+I++R IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R+ I +E L Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539 I + DIL+ R R+ II EL+ ++ RRT + + ++EDED I ED++ Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V ++H GY+KR+P+ +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K + +P A+G +IN+L +N E+I+ ++ + + ++ Y+ F TK G V+R Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +++F I +G A+ L DE++ VE +++ +++ T G + F S +R GR Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRGI L D VI A + Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +L +SE GFGK+TS+ ++ I R G G++ +V+ N G Sbjct: 710 ----------------SDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--G 751 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV + VN ++ I+LV+D+G +IR + + R+ GV + RV ++ ++ Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARVATIAKV 809 >gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] Length = 834 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 353/917 (38%), Positives = 510/917 (55%), Gaps = 94/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ E I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTQDTTLP--PEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVKCAR+ G+V+G YHPHG+AA+YD L R+AQ W +R L++GQGNFGS Sbjct: 59 YDGGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSP 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECRL A +L D+GK+TVDF PNYDG EPV+L AR+PN+LVNG Sbjct: 119 GNDPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSA 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +++PD + L+ E I+GPDFPTG VI+G G Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIVGHAG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSIV+R V +E+ + R+ +VVT++PYQVN + +IAELV E RI I Sbjct: 239 IEEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGI 298 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RD+S R G R+VI LKR A V+L LY++T LQ F NMVAL P +L Sbjct: 299 ADIRDDSSSRTGQRLVISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDNVPRTLSLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +VA + +V+VRRT+Y L +A RAH+L GL A+ LD V+ +IR S + + AR Sbjct: 359 AFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARS 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + EVQ AIL+++L +L L R I + Sbjct: 419 GLME--------------------------LLDVDEVQATAILDMQLRKLAALERQAIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L EI + DIL++ SR I+ +EL + D+ RRT IV D+ ED I Sbjct: 453 DLAKHEAEIADLNDILANESRQRAIVSEELKEIVDKYGDERRTAIVPADGDVSIEDLIAE 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR S+YR+QRRGGKG G +R +D V F+ +TH +LFF+ Sbjct: 513 EDVVVTITRGGYAKRTKTSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDK 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + +P + ARG+ + N+L+ E+I ++ + + Y+V AT+ G Sbjct: 573 GRVYRLKAYEIPEAARSARGQHVANLLAFQPDEKIAQVLALRDYD---AAPYLVLATRSG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ L +F G IA+ L D ++ + ++++LL ++ Q +RF + Sbjct: 630 LVKKTALREFDSNRTGGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEAL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ D +++M +V Sbjct: 690 RPM-GRATSGVIGMRFHDDDALLAMMVVRP------------------------------ 718 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++ + KG+ KRT ++ + R G G+ ++ Sbjct: 719 -----------------------QAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKIT 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 E G LV V++ D+++ ++ G +IR V+E+R SRAT GV + A+++ +V+ Sbjct: 756 A--ERGDLVGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLAENDALVA 813 Query: 894 VERIRESEIVDEAESTE 910 + R E E Sbjct: 814 ITRNAERGGDAGIGEEE 830 >gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] Length = 815 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 363/897 (40%), Positives = 557/897 (62%), Gaps = 86/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Q+G++ NK Sbjct: 3 ENQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+GKDTVDF PN+DG EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + NP+I +D L++ I GPDFPTGA+ILG+TGIK AY TGRG I R Sbjct: 183 PHNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V IE +RE+I+++EIPYQVNKA ++EKIA+LV+EKRI I+D+RDESDR+G R+V Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+KR ++A+++LN LY+YT L++ F + +AL G +P+ L +++ +V ++EVV R Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L++AR+R H++ GL IA+ ++DE+++IIR S + + ++ R Sbjct: 363 RTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q++AIL+++L RL+GL + + E L I+ L IL Sbjct: 412 ---------------YKLSDAQSQAILDMQLKRLSGLEIEKLNAENKELADTIEYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S L+ +I E+ +K++ RRT+IV +++ + I ED+++ ++ GY+KR+ Sbjct: 457 NSEENLINLIIDEITEIKEKYSDERRTKIVPDEGEIDITELIEEEDILINLTKDGYIKRL 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+SLG VY + +++P GS Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RG+A+INIL+L GE+IT +M E N +V T+ G +++ +F I R+ Sbjct: 577 TSRGQAIINILNLETGEKITEMMTLSELS---KNSQLVLQTQQGQIKKTDAENFTNIRRN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D+++SV ++ +++++T+ G ++F +R GR++VGVR I L K Sbjct: 634 GIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSM-GRSAVGVRAIRLDK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+SM I Sbjct: 693 DDAVVSMNI--------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K +E ++L V+E GFGK+TS +F+ NR GKG+R VS+ + G +V PV+ + Sbjct: 702 --KGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSE--KTGKVVDTLPVDLDT 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907 I++VS KG +IR+ ++ R T GV + + ++++ +VSV +E + Sbjct: 758 DIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSVTTYDNMLEDEEKD 814 >gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] Length = 803 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 535/885 (60%), Gaps = 84/885 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K ARI G+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD AA RYTE R+ K +L Sbjct: 61 YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGMATNIP HNL EV +G Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R + IE+ S + Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQG R+VIEL+ D++L Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+LY++T LQ F V M+AL P L +L ++ R +V+VRRT++ LNKA RA Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q AIL++RL RLTGL R+ I E L I++ IL+S +R IIK E Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDE 454 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +K + PRR+ I D++ ED I E+MV+T++ GY+KR+ +VYR Q +GG Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623 G G+ +++D+VT + V TH ++LFF+S G Y+ K + +P GS +RG A++N+L Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L GE +TT++ + E ++ + T+ G V+R + ++ I RSG A+ LD D Sbjct: 575 LAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++SV T DIL+ TKLG +RF +R+ R + GVRGI L GD V+ ++ Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVLNT 690 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + E + T+ Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKR + + + R GKG + ++ N+ G +VAV V+++D+++L+S++G +I Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758 Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R +N+I + +A GV + + ++V S+ I +EI +E E Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803 >gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 880 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 350/887 (39%), Positives = 526/887 (59%), Gaps = 84/887 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE K I+ EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A ++ D+ K+TVDF PNYDG +EP VL +R+PN+LVNG GIAVGM TNI Sbjct: 123 TEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ ++ NP LME + GPDFPT +++G+ GIK AY TG+G I++ Sbjct: 183 PPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I+ + +E+I+V+EIPY VNKA ++E+IA+L R+KRI I +RDE+ RQG R+ Sbjct: 243 RARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE ++ ASA VILN L++ T +Q+ F+ NMVA++ P+ +L IL+ ++ +EE++ Sbjct: 303 VIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIR 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+ + KA RAH+L GL IA+ ++DE+V I+R S + A+ M + Sbjct: 363 RRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQ---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AIL++RL RLTGL R+ I NE L EI ++ Sbjct: 413 ----------------YGLSDKQAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEV 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549 L+S + II QELL ++ RRT I G + EDED I ++++T+S GY+K Sbjct: 457 LASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RV S YR Q RGG+G G+ ++D D + + STH +L F+ G V++ K + +P Sbjct: 517 RVEDSEYRTQNRGGRGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEY 576 Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L+L + E++ ++ P D+ + + Y F TK G V+R + ++ I Sbjct: 577 GRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNI 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V + E++I+L + G V F +R GR + GVRGI Sbjct: 637 RNNGLIAINLRDDDELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSM-GRTATGVRGIR 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ +I+ Sbjct: 696 LDQDDYVVGASILGP--------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +Q +L V+EKG+GKRT + ++ I +R GKG++ ++++ N G LV + V+ Sbjct: 711 --------DQDVLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKN--GPLVGLATVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ I+L++D+G +IR +I RAT+GV + + V ++ Sbjct: 761 LDEDIMLMTDEGVVIRFHSVDISQTGRATQGVRLMRLDEAAHVSTMA 807 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + K + + + + G I+ ++L + ++T+S KG Sbjct: 454 NEVLASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKG 513 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 + KR ++R NR G+G++ + + I A+ + +D I+ +D+G + ++ Sbjct: 514 YIKRVEDSEYRTQNRGGRGVKGMALQDGDHID---AMLSTSTHDVILCFTDRGRVFQIKG 570 Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908 EI RA KG V + + +DE+V V + S+ ++E Sbjct: 571 YEIPEYGRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSED 614 >gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4] gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4] Length = 872 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 346/891 (38%), Positives = 536/891 (60%), Gaps = 67/891 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I V+I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++G +K Y Sbjct: 3 DQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY L RMAQ WS+R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K + +L D+ KDTVDF+ N+D + +EP VL +R PN+LVNG GIAVGMATN+ Sbjct: 123 EARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVD +A IDN DI++ +++ I+ PDFPTG +I G G+K A+ TGRG IV+R Sbjct: 183 PHNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIYGYAGVKEAFETGRGRIVVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE + RE+IV+ EIPYQVNK +++ + LV +K++ IA + DESDR+G R+V Sbjct: 243 SKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +++KR A++ V+LN+L++YT+LQS FSVN +AL +P + ++ FV R EVV+R Sbjct: 303 VDVKRDANSSVVLNKLFKYTALQSSFSVNNIALVHGRPRMLNVKDLIHYFVEHRHEVVIR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L +A RAH+L G I + NLDE ++IIR S P+ AR LM+R Sbjct: 363 RTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q+RAI+E+RL +LTG+ +D +R E + I +IL Sbjct: 412 ---------------FGLSEIQSRAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + IIK ELL VK + RRT+IV + ED ++M++T+SHLGY+KR Sbjct: 457 EKIELRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRT 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS +RAQ RGG G G RDEDF+ ++ S H ++LFF+S G Y KV+ +P GS Sbjct: 517 ALSEFRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSK 576 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ +++ + D + Y++FATK+G +++ L + + Sbjct: 577 NSKGRAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPR 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +++L+ + G+ +RF S +R GR + GVRG++L Sbjct: 637 QNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREM-GRTATGVRGMTL 695 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+++ M V D + + + D + +N ++ Sbjct: 696 DEDGEDELVGMICVNKEDNENIMVVSQQGYGKRTLLDEVDDEGNLMLDENGETIPV---- 751 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +R++NR GKG++ +++ ++ G LV + V Sbjct: 752 -----------------------------YRVTNRGGKGVKTMNIT--DKTGKLVTIKNV 780 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V + R+ RAT+GV + + K ++ + SV ++ Sbjct: 781 TDENDLMIINKSGITIRLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 99/251 (39%), Gaps = 30/251 (11%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +K+ L Y R+ G + + +R++D V + + ++ VL + G + Sbjct: 619 TKNGVIKKTSLEAYSRPRQNG--VNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFH 676 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++ A G + L + + + ++ ++ +N ++ ++ G +R L Sbjct: 677 ESKVREMGRTATGVRGMT-LDEDGEDELVGMICVNKE----DNENIMVVSQQGYGKRTLL 731 Query: 663 S--------------------DFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTK 701 G M + + ++++++ T END+++ K Sbjct: 732 DEVDDEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLVTIKNVTDENDLMIINK 791 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSA 760 G +R ++ RV GR + GVR I+L K D++ S+ VL + + + + Sbjct: 792 SGITIRLKVADFRVM-GRATQGVRLINLEKRNDEIASVCKVLSENEEEVVEETEVSAVPV 850 Query: 761 QRRLISGDTEE 771 ++ + Sbjct: 851 TDAVVGETETD 861 >gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896] Length = 812 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 365/886 (41%), Positives = 547/886 (61%), Gaps = 86/886 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S EE I V + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q + Sbjct: 2 SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K A I G+V+GKYHPHG+ A+YDAL +MAQD+S+R L++G GNFGS+DGD AA Sbjct: 62 DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R++K + +L DL K+TVD PNYD + EP VL ARYPN+LVNG GIAVGMA Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 T+IP HNLGEV+D V +IDN D L+ +++ I+GPDFPTGA I+G + + AY TGRG Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +V R + E+ SG + +IVVTEIPYQVNKA ++EKIAEL+++KRI I + DES+R+G Sbjct: 242 VVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIEL+R + D++LNQL++++ LQ +FS+ M+AL P+ TL +L+ ++ +EE Sbjct: 302 MRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA+DR H++ GL A+ ++DEV+ IIR S + A LM+R Sbjct: 362 VVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYS--DAMERLMER------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 SE+Q +AIL+++L RL GL ++ + +E L +I Sbjct: 413 -------------------FDFSEIQAKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYY 453 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +ILS RS LL IIK+E+L +K + RRT + D++ +D I +++ VT++HLGY Sbjct: 454 QEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDIDIKDMIPDDEVTVTLTHLGY 513 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV + Y+ Q+RGGKG + + RDEDFV L + S H+ V+FF+++G +Y+ + +P Sbjct: 514 IKRVGIDTYKTQKRGGKGIASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIP 573 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G ++NIL L GE++ T++ E+++ ++ +VV T+ G +++ L +F + Sbjct: 574 ESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQA--SSGFVVMCTRKGIMKKTPLEEFQR 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 NR+G IA+ L DE++ VE +I+ + G+ + F S IR GR + GVR + Sbjct: 632 SNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFDESDIRSM-GRTAQGVRAM 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+++SM I Sbjct: 691 NLEEGDEIVSMMI----------------------------------------------- 703 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E+ +L +SE+G+GKRT ++ + R GKG R +++ + G LV V Sbjct: 704 ------ADPEKDVLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITE--KTGRLVGGKVV 755 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +++D+I++V+ GTLIR+ V I + SR T GV + TA+++ + S Sbjct: 756 SNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMKTAENQDIAS 801 >gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] Length = 867 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 353/896 (39%), Positives = 548/896 (61%), Gaps = 86/896 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD PA Sbjct: 63 SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ K+TVD N+D + +EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNL EV+DGC A IDNP+I ++ LM+ I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 I++R + IE ++IVVTEIPY VNKA ++E IA+LV+E ++ I+++ DE+ RQ Sbjct: 243 RIIMRAKAEIESDDT-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A++ILN+L++ T+LQS FSVN +AL +P +L +K FV R Sbjct: 302 GMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVKGRPRLLSLQECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L GL IA N+DEVVRIIR S P A+ L +R Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L ++Q++AI+++RL++LTGL +++ E + + IK+ Sbjct: 416 --------------------FDLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKD 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL++ R ++K+EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G + K + + Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G A+G+A+ N+L+L+ + + + DE ++ YVVFATK G V++ L Sbjct: 576 PEGDKTAKGRAIQNMLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRH 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V N++++ + G+ RF A+R GR S GV Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L D VI M +V + Sbjct: 695 RGMRLDDDGEDGVIGMIVVNDTEK------------------------------------ 718 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LV Sbjct: 719 ---------------ETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITE--KTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERI 897 A+ V D + +++++ G +IR+ V E R+ RAT+GV + + K++ + SV ++ Sbjct: 762 AIKNVTDENDLMIINQSGIVIRLAVAECRVMGRATQGVRLINLAKKNDVIASVCKV 817 >gi|256830857|ref|YP_003159585.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028] gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028] Length = 848 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 363/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI E+Q SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++G +N+ Y K AR+ Sbjct: 3 NISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARV 62 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GK+HPHG++A+YDAL RMAQ++++R L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 63 VGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSK 122 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L D+ KDTV+FRPNYD S QEP VL + PN+LVNG GIAVGMATNIP HNLGE Sbjct: 123 LAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGE 182 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVDG + ++D+P + +D LM+ I+ PDFPTGA+I G+ GI+ AY TGRGS+ IR IE Sbjct: 183 VVDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIYGKAGIREAYRTGRGSVRIRSRIEIE 242 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 K GD E IVV EIPY +NK+ ++EKIA LV E++I I+DLRDESD +G R+V++LK+G Sbjct: 243 KRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLKKG 302 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +DVI+NQL+++TSL++ F +NM+A+ +P+ + +L+ F+ +R EVV+RR+++ L Sbjct: 303 VFSDVIVNQLFKFTSLETSFGINMMAVVNNRPQLLNVKQVLEYFLDYRREVVIRRSRFDL 362 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA+ RAH+L GL IA+ +DEVV +IR S P+ A+ L +R Sbjct: 363 RKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRER----------------- 405 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE+Q +AIL++RL RLT L R+ + E L +I+ ++ + L Sbjct: 406 ---------FGLSEIQAQAILDMRLQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVL 456 Query: 498 LGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +I+QEL ++D TPR++ I ++ ED I E +V+T+S GY+KR L Y Sbjct: 457 KSVIRQELQDLRDNFATPRKSEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLDNY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGG G +GV + +EDF+T + S H + FS+ G +Y+ KV ++P G ARGK Sbjct: 517 RQQRRGGTGITGVQVAEEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGK 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L+ E I M + + + F TK G V+R+ + + I G IA+ Sbjct: 577 HVANLLPLDSNEYIAAAMTCRDLD---QEKFYFFYTKLGVVKRSSVHLYRNIRAVGLIAL 633 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 + DE++ V ++++L T G +RF S +R GR + GV+G++L KGDQV+ Sbjct: 634 GMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAM-GRTATGVKGLALRKGDQVV 692 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + +V K Sbjct: 693 AGVVVN---------------------------------------------------KDT 701 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +Q +LT++E G+GKRT FR +R GKGI ++ + G +V V D++IL+ Sbjct: 702 QQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITP--KTGKVVGAMMVYPTDELILL 759 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +IR+ +++I + RAT+GV + ++ VV + + Sbjct: 760 TSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVVCFDHVPTDAPE 806 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 149/434 (34%), Gaps = 34/434 (7%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP---ETARRELMQRSWNASDIKDL 430 + LL + + + L + N + + +IR A + + D D+ Sbjct: 430 EKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATPRKSEILAHDPDSIDI 489 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 D+I D I YL + ++ R R G G ++ I + Sbjct: 490 EDIIPDEPVVITLSRNGYL---KRTSLDNYRQQRRGGTGITGVQVAEEDFITFILTTSN- 545 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------REDM 538 L + ++ RT + + ++ D +E Sbjct: 546 -HQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAAAMTCRDLDQEKF 604 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 + LG VKR + +YR R G G+ RD+D + + V T+ ++ + G+ Sbjct: 605 YFFYTKLGVVKRSSVHLYRNIRAVGLIALGM--RDDDELIGVREVETNDEMVLVTVDGYS 662 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + + A G + L+L +G+++ + +D ++ ++G + Sbjct: 663 IRFACSDVRAMGRTATG---VKGLALRKGDQVVAGVVVNKDTQQE----LLTIAENGYGK 715 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++ F +R GK + + +++ ++++L T + +R IS I Sbjct: 716 RTQVEHFRAQSRGGKGIINMRITPKTGKVVGAMMVYPTDELILLTSGSKIIRIGISDI-S 774 Query: 716 FAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVR + L V+ + A + + G + Sbjct: 775 LVGRATQGVRLVRLEDEQTVVCFDHVPTDAPEVSGVPRAEVPSPDSDPEDSVGPDDVDLP 834 Query: 775 LKNDSSVEGNISEE 788 ++ E + S+E Sbjct: 835 DDDEMLDETDESQE 848 >gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001] gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001] Length = 883 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 360/916 (39%), Positives = 542/916 (59%), Gaps = 58/916 (6%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + +D + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MAD---PTDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+++RL L++G GNFGSV Sbjct: 58 YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSV 117 Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 DGDPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP V+ AR P +L+NG Sbjct: 118 DGDPPAAMRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGS 177 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNL E++DG +A+I +PD++ LM II GPDFPTG ILGR GI+ Sbjct: 178 TGIAVGMATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRE 237 Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 Y TGRGS+ +RGV+ +E DR+ I++TE+P+Q NKA+++E+IAELV +K++ Sbjct: 238 TYTTGRGSVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDG 297 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+D+RDESDR G R+VIEL+R A V+LN L++ T LQ+ FS M+AL +P TL Sbjct: 298 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLR 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ F+ FR E + RRT++LL KA +R H+L+GL IA+ +LD ++ +IR + + +AR Sbjct: 358 KMLEVFLEFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARS 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 EL+ + L+E+Q AIL+++L RLT L D IR Sbjct: 418 ELVAQ--------------------------FGLTEIQADAILQMQLRRLTALEADKIRL 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I + DIL+ R R+ GII EL ++++ +PRRT I++ +ED D I Sbjct: 452 EHEDLLAKITDYKDILARRERVFGIITDELGAIRNRYLSPRRTEILDLEGGLEDIDLIAN 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L FS Sbjct: 512 ERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDR 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY +R+PI S A+G ++ +L + + E+IT+++ +V T G Sbjct: 572 GVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQITSLLAVSAFS---EEAMLVMLTSGG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++R +LS F I +G IA+ L+ D++ V + +L+ + G + F ++ + Sbjct: 629 YIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEEL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVR ++L GDQ++SM ++ AD R S D+ + Sbjct: 689 RPL-GRTARGVRAMNLRAGDQLVSMDVLSAELAD--------------RVASSSDSAGLE 733 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + V ++ E + ++L S G GKR FR+ R+G G+RA Sbjct: 734 ESEPEELVADEVAAEEVAV--SEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKF- 790 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + LV + + ++++LVS++G ++R + I SRA GV + +R+V Sbjct: 791 -RRDGDTLVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVE 849 Query: 894 VERIRESEIVDEAEST 909 V + + DE ++ Sbjct: 850 VVLVPPAASEDELDAA 865 Score = 89.1 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 104/305 (34%), Gaps = 30/305 (9%) Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 + L + + I + + + ++ + + G +R + ++ R+ + ++ Sbjct: 449 IRLEHEDLLAKITDYKDILARRERVFGIITDELGAIR----NRYLSPRRTEILDLEGGLE 504 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738 D ++ E ++L T+ G R P+S R + G G + V IS Sbjct: 505 D----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFISC 559 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + D + Y E I+ +E Sbjct: 560 NDHDNLLLFSDRGVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQITSLLAVSAFSEEA 619 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++ ++ G+ KRT F SN G+ A + + L V D +++ S Sbjct: 620 MLVMLTSGGYIKRTRLSAF--SNIRSNGLIAISL---EDGDDLRWVRLALPGDSVLIGSL 674 Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-----------DE 905 KG I R+ E+R R +GV + +++VS++ + +E Sbjct: 675 KGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELADRVASSSDSAGLEE 734 Query: 906 AESTE 910 +E E Sbjct: 735 SEPEE 739 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 95/272 (34%), Gaps = 36/272 (13%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E M+V ++ GY+KR LS + R G + D+ L SVL Sbjct: 615 FSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRL--ALPGDSVLIG 672 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN----------------------------IL 622 S G ++ L ARG +N L Sbjct: 673 SLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELADRVASSSDSAGL 732 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD- 679 ++ E + E+ + +V+ A+ G +R + F R+G A+K Sbjct: 733 EESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRR 792 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 D ++ ++ ++LL ++ G VR + R + GVR L GD+++ + Sbjct: 793 DGDTLVGLKVLGAGEEVLLVSERGVIVR-TEADAIPQQSRAATGVRLQRLDAGDRLVEVV 851 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +V A ++ + + A + D + Sbjct: 852 LVPPAASEDELDAAVDAELDAAVDAEAQDPAD 883 >gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] Length = 821 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 362/906 (39%), Positives = 541/906 (59%), Gaps = 86/906 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY TG+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ ++ Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 K+ +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ I++++ G +IR ++ R+T GV + D +V S+ + + Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTEAEQN 815 Query: 905 EAESTE 910 + + E Sbjct: 816 QTDDDE 821 >gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri] gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] Length = 829 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 358/898 (39%), Positives = 540/898 (60%), Gaps = 90/898 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM Sbjct: 1 MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV Sbjct: 55 NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++ K A +L D+ K+TVDF NYDG+ +EP VL AR+PN+LVNG Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV++G +++NPDI + LM+ I GPDFPTG V++G++GI+ A Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG+I++R IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL RLTGL R+ I +E L Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539 I + DIL+ R R+ II EL+ ++ RRT + + ++EDED I ED++ Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V ++H GY+KR+P+ +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K + +P A+G +IN+L +N E+I+ ++ + + ++ Y+ F TK G V+R Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +++F I +G A+ L DE++ VE +++ +++ T G + F S +R GR Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRGI L D VI A + Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +L +SE GFGK+T + ++ I R G G++ +V+ N G Sbjct: 710 ----------------SDSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKN--G 751 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV + VN ++ I+LV+D+G +IR + + R+ GV + RV ++ ++ Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV 809 >gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] Length = 816 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 358/897 (39%), Positives = 529/897 (58%), Gaps = 86/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + V I +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ K Sbjct: 4 ENTTGKVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGD PAA R Sbjct: 64 PYKKSARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+D+ KDTVDF PNYD S +EP VL ++ P +L+NG GIAVGMATN Sbjct: 124 YTEVRMAKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV+G V +IDNPD+++ LM I+GPDFPTGA ILG+ GI +AY TGRG + Sbjct: 184 IPPHNLCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVK 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 IR + I + + IV+TEIPYQVNKA +++ IA L ++ I I + D S + G Sbjct: 244 IRAKAEIVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGM 303 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 ++V+ELK A DV+LN+LY++T+LQS F + M+AL +P L +L+ ++ +++V Sbjct: 304 KIVVELKSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQKDV 363 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+DRAH+L GL IA+ N+D V+ IR S E AR LM+ Sbjct: 364 ITRRTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALME--------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q +AIL++RL RLTGL R I E L I Sbjct: 415 -----------------NFKLSQRQAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLE 457 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +++ IIK++L +K RRT I +M+ ED I ED+VVT+SH GY+ Sbjct: 458 SVLADEHKVMNIIKEDLQEMKKRFGDERRTEISIDSSEMDIEDLIAEEDIVVTISHQGYI 517 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR L +R+Q+RGG G++G + +D LF+ +TH ++LFF++ G VY++K + +P Sbjct: 518 KRQTLDNFRSQKRGGVGKTGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIP 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G A+IN+L+L GE+IT ++P E Y+ AT G V++ L D Sbjct: 578 EASRTAKGTAIINLLALMPGEKITAVIPVKEFR---EEQYMFMATNKGTVKKINLKDLES 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + ++G IA+ LD ++++ VE ++I+L T+ G +RF +R GR + GV+GI Sbjct: 635 VRKNGMIAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTM-GRTAHGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL GD+V++M V Sbjct: 694 SLNYGDEVVAMDSV---------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ +LT +E G GKRT ++R R GKGI +++ + G ++ + + Sbjct: 708 ------SDEDSEVLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITE--KTGLVIGMKVI 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 N + +I++++ G +IR V++I R T+GV + + D++VVS+ I E + Sbjct: 760 NPDQEIMMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEEDAE 816 >gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] Length = 836 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 355/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++E IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K A ++ D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GS Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EE Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ + R+ II EL+ ++++ RRT + + ++EDED I ED++VT++H G Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + + Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L GD +I A + Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ +L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905 V ++ +++V+DKG +IR V + R+ GV + D V ++ ++ + + Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818 Query: 906 ----AESTE 910 AE E Sbjct: 819 TEASAEEAE 827 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 17/231 (7%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VKR P++ ++ R G + + + D + ++ IV +++ + LG Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV + A A + L G+ + P ED+ V+ ++ G ++ Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725 Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 S++ I G + +K + + + T + D+++ T G +RF + ++ Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR+++GV I + V +M V A+ D + Sbjct: 784 QTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPD 834 >gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] Length = 845 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 357/924 (38%), Positives = 523/924 (56%), Gaps = 101/924 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + + + I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTETLPPA--PDHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 59 FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L D+ +DTVDF NYDG QEP VL +R+PN+LVNGG Sbjct: 119 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G V ++NP+ D L+ I+GPDFPT A+ILG +G Sbjct: 179 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +R V +E+ + R +VV+E+PYQVN ++E IA LVR+ ++ I Sbjct: 239 IEDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGI 298 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DES+ R G R+V+ +KR A A V+LN L+++T LQ F VNM+AL P L Sbjct: 299 SDIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I++ +V + +V+VRRT+Y L K +RAH+L GL A+ LDEV+ +IR SP+ + AR Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL+++L RL L R I + Sbjct: 419 ALMT--------------------------LLDIDEIQAVAILDMQLRRLAALERQRIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + IEI + DIL R II+ EL+++ D+ RRT+I+ D+ DE+ I Sbjct: 453 ELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDKYGDDRRTKIIGFSGDVTDEELIAV 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 513 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+++ E+I ++ E Y+V ATK G Sbjct: 573 GRVYRTKAYELPEANRNARGQHVANLMAFQPDEQIAQVIQIKNYEV---APYLVLATKRG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G IA+ L DE++ E+D+LL + GQ +RF + + Sbjct: 630 LVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEAL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ GD+++ +++V Sbjct: 690 RPM-GRPTSGVMGMRFNDGDELLGISVVKEG----------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +F+L ++ G+ KRT+ D+ + R GKG+ Sbjct: 720 ------------------------KFLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHD 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + + G LV V+ D++ ++ G +IR P ++R A R TKGV + + + +++ Sbjct: 756 R--KRGRLVGALIVDAEDELYAITSSGGVIRTPAGDVRKAGRQTKGVRLMNLGEGTTLLA 813 Query: 894 VERIRES-------EIVDEAESTE 910 V R + E + E+ E Sbjct: 814 VARNADEPSDVANGEAPEAPEAGE 837 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 90/235 (38%), Gaps = 13/235 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ L+ + + R GG + +R+ D + + + +L S+ G Sbjct: 620 PYLVLATKRGLVKKTKLTDFDSNRSGG--LIAINLREGDELVGAVLAAAEDDLLLVSAEG 677 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + N G+ + I +++ AT G Sbjct: 678 QSIRFHATDEAL-RPMGRPTSGVMGMRFNDGDELLGISVVK------EGKFLLVATDGGY 730 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + D+ R GK + + ++ E+++ T G +R P + Sbjct: 731 SKRTAIEDYPVQGRGGKGVLTIQHDRKRGRLVGALIVDAEDELYAITSSGGVIRTPAGDV 790 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R AGR + GVR ++L +G ++++A +D + + + Sbjct: 791 R-KAGRQTKGVRLMNLGEGTTLLAVARNADEPSDVANGEAPEAPEAGEETTAPSE 844 >gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4] Length = 840 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 361/908 (39%), Positives = 540/908 (59%), Gaps = 93/908 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + I + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M ++ + Sbjct: 2 EPNIFDKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + K ARI G+ MGKYHPHG+++IY AL MAQ WS+R +L++G GNFGS+DGD AA Sbjct: 62 KPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNGG GIAVGMAT Sbjct: 122 RYTEARLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + I+VTE+PY VNKA ++EKIAELV+ K+I I + DES Sbjct: 242 GRGKIRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+V+LNQL ++T LQ F V M+AL +P+ ++ +L+ ++ Sbjct: 302 NREGIRINIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNEPKVLNILQMLEYYLD 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +++VV RRTKY LNKA +RAH+L GL A+ ++DEV+RIIR S N A+R LM+R Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L++ Q +AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FELTDPQAQAIVDMRLRALTGLEREKLENEYKELEAK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ ++LLG+IK+E+L + ++ RRT+I DM ED I +D V+ ++ Sbjct: 456 IAELRAILADENKLLGVIKKEILVISEKYGDDRRTKIG-FEDDMSVEDLISDDDTVIAMT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +LGY+KR+ + +++Q RGGKG G+ DEDF+ DL + + H ++FF++ G Y+ K Sbjct: 515 NLGYIKRMSVDNFKSQNRGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKA 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N+L L GE++T +P E ++ Y+ ATK G V++ ++ Sbjct: 575 YEIPEAGRTARGTAIVNLLQLQPGEKVTAAIPMRE---IDDDKYLFMATKGGMVKKTRMC 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L TK G +RF + R GR S G Sbjct: 632 EYSNMRKTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKETDAR-ITGRVSYG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ L +GD+VI M + + Sbjct: 691 VIGMKLDEGDEVIGMQMASQGE-------------------------------------- 712 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L SEKG+GKRT +F++ R GKG+ +V++ + G LV Sbjct: 713 ---------------YMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTE--KTGNLVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRESE 901 + ++D I+L++++G LIR+ V++I I R T GV + S D RV S+ ++RES Sbjct: 756 MKLLDDGRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIAKVRESS 815 Query: 902 IVDEAEST 909 DE + Sbjct: 816 RQDEEDEN 823 >gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325] gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325] Length = 814 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 376/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R +++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVD + NYDG+ QEP VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTGA +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+I++TEIPYQVNKA ++EKIAEL R+K+I I DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQ F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLI----------- 410 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +AIL++RL RLTGL RD I E L I++ D Sbjct: 411 ---------------NEFSLSEIQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L I+K+ELL VK++ RR+ I+E + +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + ++F+T+ G V+++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTSLMFSTRFGIVKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T E DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D VI M +V + Sbjct: 693 LSPDDYVIGMEVVDESKK------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILTV+E G GK + S +F + NR GKG++ V+K + G +VAV V+ Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSVS 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 N+ +++++D+G +IR+ V+ I R GV + + D++V +V + EI +E Sbjct: 758 GNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814 >gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C] gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C] Length = 874 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 359/932 (38%), Positives = 530/932 (56%), Gaps = 108/932 (11%) Query: 1 MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M + + E + I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR Sbjct: 1 MADETTPTAEGSAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ G Sbjct: 61 VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTEC+L A +L D+ ++TVDF+ NYDG QEP VL AR+PN+L Sbjct: 121 NFGSPGNDPAAAMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231 VNG GIAVGMATNIP HNL EV G +++P+ + L+E I+GPDFPTGA++ Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALV 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDG 299 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 +I IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 ++ ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S Sbjct: 360 TLSIDAFIRHWVQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTV 419 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 E AR LM G + + E+Q AILE++L RL L R Sbjct: 420 EIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALER 453 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I E + L +I E IL+S + I+ +EL ++ ++ RR+++V DM E Sbjct: 454 QKIVAEHDELQAKINEYNAILASPEKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIE 513 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVT++H GYVKR YR+Q+RGGKG G ++ +D V F+ +TH +L Sbjct: 514 DLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLL 573 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP ARG+ + N+L+ E+I ++ + E Y++ Sbjct: 574 FFTNKGRVYRSKAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYE---AAPYLIL 630 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---------RDEILSVETCTQENDILLTTK 701 ATK G V++ L D+ G IA+ L DE++ E + E+D+LL +K Sbjct: 631 ATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISK 690 Query: 702 LGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 Q +RF + +R GR + GV+G+S +GD+++SM++V Sbjct: 691 KAQSIRFTATDEALRPM-GRATSGVKGMSFREGDELLSMSVVRPGT-------------- 735 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 F+ T ++ G+ KRT+ ++R+ Sbjct: 736 ---------------------------------------FVFTATDGGYAKRTAVDEYRV 756 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R G GI+A + + + G+LV V+++D+I+ ++ G +IR V+E+R R T G Sbjct: 757 QGRGGLGIKAAKIVE--DRGSLVGALVVDESDEILAITLGGGVIRTRVSEVRETGRDTMG 814 Query: 880 VVIFSTAKDERVVSVERIRES-EIVDEAESTE 910 V + + K + VV + R E+ + DEA+ E Sbjct: 815 VQLINLGKRDAVVGIARNAEAGQEADEADEIE 846 >gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20] gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20] Length = 842 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 357/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG+ ++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE S ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 ARAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A ++LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 D + +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 103/229 (44%), Gaps = 12/229 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + ++ ++ G Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T END+++ K G +R ++ +R Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR 762 + GR + GVR I+L K D++ S+ V + + + + + Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEELIEEGEENTLESPQ 833 >gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] Length = 849 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 355/902 (39%), Positives = 539/902 (59%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A+++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLSHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 ---------------DGYSLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + +++ ++ E+ V+ T++ GY+ Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ + + Y+ F T+ G V+R +++F I Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKD-YLFFVTRLGVVKRTAVNEFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ IL+ TK G VRF +R+ GR++ GVRGI Sbjct: 636 RTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + Sbjct: 695 LR-----------------------------------------------------DGDVV 701 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ +L ++EKG+GK+T ++ I R GKGI+ ++++ N GAL + ++ Sbjct: 702 VGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKN--GALAGMTIIH 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I++ + +G +IR + + RAT GV + +V ++ ++ E+V AE+ Sbjct: 760 GDEDIMVTTTQGVMIRFTASSVSQTGRATLGVRLIRLEDGAKVATLAKVDHEEVVVSAET 819 Query: 909 TE 910 ++ Sbjct: 820 SQ 821 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 17/256 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + +D + V+ LG VKR ++ + R G + +RD+D V + I S+L Sbjct: 607 EAGESKDYLFFVTRLGVVKRTAVNEFSNIRTNG--LRALTLRDDDEVLSVQITDGTQSIL 664 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G+ + + I A G I R+ + N V+ Sbjct: 665 IATKDGYSVRFTEDDVRIMGRSAAGVRGI---------RLRDGDVVVGSDVVNPNDNVLV 715 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCV 706 T+ G ++ +S++ I G +K + + + + DI++TT G + Sbjct: 716 ITEKGYGKQTPVSEYP-IKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIMVTTTQGVMI 774 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF S++ GR ++GVR I L G +V ++A V H + Sbjct: 775 RFTASSV-SQTGRATLGVRLIRLEDGAKVATLAKVDHEEVVVSAETSQNVSRETPLDGKQ 833 Query: 767 GDTEEITSLKNDSSVE 782 + + +S Sbjct: 834 IEQVAELLDRANSDEN 849 >gi|307693840|ref|ZP_07636077.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16] Length = 852 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 365/910 (40%), Positives = 545/910 (59%), Gaps = 92/910 (10%) Query: 1 MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ EE ++ I + + EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL Sbjct: 1 MSKKPQYDPEEIRFPDQVIKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M + G+ +K + K A G+V+G+YHPHG+ ++YDAL R+ QD+S+R +L++G GNF Sbjct: 61 YAMYEDGLTSDKPFKKSATCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS+DGDPPAA RYTE R+ K ++ +L D+ K+TVD+ PN+D S +EP VL +R+PN+LVN Sbjct: 121 GSIDGDPPAAYRYTEARMSKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GIAVGMATNIP HNL EV++ + V+DN + LD LME I+GPDFPT +I+GR+GI Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIMGRSGI 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AYATG+G I +R + E+ DR +I+VTEIPYQVNK +++ +A+ V +KR+ I+ Sbjct: 241 RAAYATGKGHIRVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLI 355 D+RDESDR G R+VIELKR A+ V+LN+L T LQ F++NM+AL +P+ TL Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLR 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 IL ++AF+E+++ RRT Y KA++RAH+L GL IA N+DEV++IIR S + A+ Sbjct: 361 EILDEYIAFQEQIITRRTIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYD--NAKE 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM R L +VQ +AIL++RL L GL R+ + Sbjct: 419 RLMTR--------------------------FGLDDVQAQAILDMRLKALQGLDREKLEA 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L I +LS L ++K EL ++D+ R+T I D++ ED I Sbjct: 453 EYKELEERIAYYDKLLSDEGLLRQVLKDELTEIRDKYGDQRKTEIAFVEDDLDIEDLIEE 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E V T++ GY+KR P+S Y AQ +GG+GR G+ RDED V D+F STH + FF+ Sbjct: 513 EQCVFTLTQAGYIKRTPVSEYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDT 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY++K +++P A+G ++NIL + QGE++ T++ E + +LY+V T++G Sbjct: 573 GKVYRKKGYQIPESGKTAKGTNIVNILQVEQGEKVQTMIHTRELD--NPDLYLVMVTRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V+R ++ I SG A++L+ D+++SV IL+ T G V F + +R Sbjct: 631 TVKRLPVTALKNIRNSGIRALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRP 690 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR++VGVRGI L +GD V+S A Sbjct: 691 M-GRDAVGVRGIRLREGDYVVSAA------------------------------------ 713 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + +LT++EKG+GKRT D+RI+NR G GI+ V++ Sbjct: 714 -----------------RATAGRTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTE- 755 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSV 894 + G +V + V+ ++ ++LV+ G LIR V+ IR A RAT+GV++ + ++V+S+ Sbjct: 756 -KTGKIVGIKVVDGSEDLLLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEGDKVISL 814 Query: 895 ERIRESEIVD 904 E + Sbjct: 815 ALAEREETAE 824 >gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] Length = 808 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 351/890 (39%), Positives = 516/890 (57%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I V + EM++SYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+ N+ Y Sbjct: 3 EKNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R LI+G GNFGS+DGD PAA RYT Sbjct: 63 RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A L+ D+ KD VDF PNYD S +EPVVL + P +L+NG GIAVGMATNIP Sbjct: 123 EVRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +I+ P+ +++ L+ I+GPDFPTG I+G GI+ +Y TG+G +++R Sbjct: 183 PHNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+T + I++ EIPY VNK+ +L +IAELV+E++I I DLRDESDR G RVV Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ +++NQLY++T LQ+ F V M+A+ +P+ F L +L F+ R+ VV R Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KAR RAH+L GL IA+ +LDEV+ IIR S N E AR +LM Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLM------------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+++Q +AIL++RL +LT L ++ + E+N + I + IL Sbjct: 410 -------------LKFKLTQIQAQAILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +I +EL +K + R+T E D+ ED + VV ++ Y+KR Sbjct: 457 KDEKELWRVISEELKEIKRKYADERKTLIEEEEKSDITIEDILPDNPEVVCITQDSYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS Y+ QRRGGKG + + ++D +T + ST +++ FS+ G VY K + L S Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G + L+++ E+IT I+ E NLY F T G V++ + +F + + Sbjct: 577 RQSKGVPIKEYLNIDNDEKITEIISVNEFP---KNLYFFFVTSKGIVKKTSIEEFENVRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+KL D +++V + ++I++ TK G +RF +R GR + GV GI L Sbjct: 634 SGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREM-GRIAQGVIGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI I + Sbjct: 693 KDDSVIGGVIFKES---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + I+ V+ G GKR + +F + R G G+RA ++ + G LV V V++N Sbjct: 707 -------KQIVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITP--KTGDLVGVKNVSEN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D+I++ + +G +IR+PVN I I SR ++GV + +D+ VVS++ + Sbjct: 758 DEILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSIDLVENE 807 >gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] Length = 824 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 551/900 (61%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL M ++G+ +K + Sbjct: 4 NKDKLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF PNYDG +EP V+ AR+PN+LVNG GIAVGMATNIP Sbjct: 124 EARMSKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGE +D A++DNPDI + LM I GPDFPTG +ILGR GI+ AY TGRGSI+I Sbjct: 184 PHNLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSIMI 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+E+ + +IVVTE+PYQVNKA ++ KIA+LVREK+I I L DES+R+G R+ Sbjct: 244 RCKHHLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ DV+LNQL+R TSLQ+ F VNM+AL+ P++ + +L ++ + +V V Sbjct: 304 VIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDVTV 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L KA DRAH+L GL IA+ ++DE++ IIR S N AR LM+ Sbjct: 364 RRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLME----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AILE+RL RLTGL RD I NE L I + DI Sbjct: 413 ---------------NFELSEIQANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R+L II+ EL VK++ RRT I + DM+DED I ED+V+T++ GY+KR Sbjct: 458 LANHDRVLQIIRDELTEVKNKYGDERRTEISDADYDMQDEDLIPVEDIVITMTTNGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y Q RGG+G G+ + ++D V L +STH +L F+++G VY+ K +++P S Sbjct: 518 MPTDTYHTQNRGGRGIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNAS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L+L++ E++ ++P D Y++F TK+G V+R ++F I + Sbjct: 578 RTAKGLPVVNLLNLDKDEKVKALVPMKVD---HEAEYLMFVTKNGLVKRVPSAEFASIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L DE++ V+ T +++I++ G+ VRF +R GR++ GV+G ++ Sbjct: 635 NGKIAITLREGDELVGVKETTGDDEIIIAGSNGKAVRFHEDGVRPM-GRSASGVKGFNV- 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G V+ MA Sbjct: 693 DGAVVVGMATSRDGT--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSE G+GKRT+ ++R++ R KG++ +++ + G LV+V VN + Sbjct: 708 --------HLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITP--KTGDLVSVRAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++V++ G +IR+ V++I I SR T+GV + + A+ E V V + + + ++E Sbjct: 758 EDAMIVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQAEEAKDTASE 817 >gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] Length = 838 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 349/901 (38%), Positives = 540/901 (59%), Gaps = 87/901 (9%) Query: 1 MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ I+ + + G+ + + EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSDKEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M G+ NK + K AR G+V+GKYHPHG++A+YDA+ R+AQD+++R+ L++G GNFGS Sbjct: 61 MYDSGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTE RL K A LL DLGK+TVD+ PNYD S QEP VL AR+PN+LVNG Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE +D ++DNPD+ + LME++ GPDFPTG VI GR GI + Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIIS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGS+ I+ I++ + I++TEIPYQVN++ +++KI ELVR+K++ +I+++ Sbjct: 241 AYETGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNV 300 Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 D +DR ++IELK+ A V+LN+L+++T LQ + V M+AL P +L IL Sbjct: 301 HDGADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 ++ +E+V+ RRT++ L KA RAH++ GL IA+ ++DEV+ IIR S + A +L Sbjct: 361 HYYILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLS 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +R LSE Q AIL+++L RLTGL R+ ++ EL Sbjct: 421 ER--------------------------FGLSEAQCTAILQMQLRRLTGLEREKLQEELA 454 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +I IL+ + +IK+EL +K +TPRRTRI D++ ED I E+M Sbjct: 455 ELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEM 514 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+++ GY+KR+P++ YR Q+RGGKG GV +++ DFV LFI STH +LFFSS G V Sbjct: 515 VVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKV 574 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y++KV+ +P ARG A++N+L L++GE I + E + +++F TK G V+ Sbjct: 575 YRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKEFP---EDEFLMFGTKEGMVK 631 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +S + + + G IA+ L DE+++V+ + + + G+ + + S +R G Sbjct: 632 KTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAM-G 690 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+++GVRG+++ G V+ + I Sbjct: 691 RDTMGVRGMTVPDGVHVLGLEIASPG---------------------------------- 716 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + I ++E+G+GKRT ++ + +R G+G+ ++ + Sbjct: 717 -------------------KEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTA--KK 755 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L A+ V D ++++S++G ++R V++I RAT+GV + + +RV +V Sbjct: 756 GQLAAMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDRVSAVAIAP 815 Query: 899 E 899 + Sbjct: 816 D 816 Score = 87.5 bits (215), Expect = 9e-15, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 21/239 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730 + LD DE++++ ++ + RF +S I R G+ L Sbjct: 394 IALDHIDEVIAIIRGSRTD---KEASDKLSERFGLSEAQCTAILQMQLRRLTGLEREKLQ 450 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + +A + A Y + M + + + + + + G + Sbjct: 451 EE-----LAELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDV 505 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L E+ ++T++ G+ KR +R R GKG++ ++ + + + L F + + Sbjct: 506 EDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHL---FIASTH 562 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906 + ++ S G + R V EI A R +G V + K E +V+ I E ++ Sbjct: 563 NYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAA--IATKEFPEDE 619 >gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190] gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190] Length = 839 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 353/918 (38%), Positives = 511/918 (55%), Gaps = 97/918 (10%) Query: 1 MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 MT+ + + I V I EMQ SY+ YA++VI+GRA+P + DGLKPVHRR Sbjct: 1 MTDTLDPTVPPTGGAGGGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M + G ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R LI+GQG Sbjct: 61 VLYSMGENGFRPDRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTECRL A +L D+ ++TVDF NYDG QEPVVL +R PN+L Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231 +NG GIAVGMATNIP HNL EV G V ++N + + LM I GPDFPT +I Sbjct: 181 INGSVGIAVGMATNIPPHNLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLI 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI++AY TGRGSI +R V +E+ + R +VVTE+PYQVN ++E IA +VR+ Sbjct: 241 VGRDGIESAYRTGRGSIRMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDG 300 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 ++ IA++ DE SDR G R+V LKR A A V+LN LY++T LQ+ F VNM+A+ P Sbjct: 301 KLTGIAEINDESSDRIGMRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDGVPR 360 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 L +++ ++ + EV+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S Sbjct: 361 TLRLDQVVRNYIRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETV 420 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 + AR+ L+ + + ++Q +AIL+++L RL L R Sbjct: 421 DVARQGLI--------------------------DLLDVDDIQAQAILDMQLRRLAALER 454 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I +EL + EI + DIL+ R I++ EL + D+ RR+R+V D+ +E Sbjct: 455 QKIIDELAEIEREIADYQDILARPERQRQIVRDELTEIVDKHGDERRSRLVADDGDVTNE 514 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +L Sbjct: 515 DLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGKGVQGATLKQDDIVAHFFVCSTHDWML 574 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP + ARG+ + N+L+L E I +M + Y+V Sbjct: 575 FFTNKGRVYRLKAYELPEANRNARGQHVANLLALQPDEHIAQVMQIKDY---QAAPYLVL 631 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT+ G V++++L DF G I + L DE++ C+ ++D+LL + GQ +RF Sbjct: 632 ATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGAVLCSADDDLLLVSAEGQSIRFTA 691 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV G+ GD+++S+ +V Sbjct: 692 DDAALRPM-GRATSGVLGMRFNDGDRLLSIGVVQD------------------------- 725 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++F+L + G+ KRT D+ + R GKG+ Sbjct: 726 ----------------------------DKFVLVATAGGYAKRTPIEDYPVQGRGGKGVL 757 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G LV V +D++ ++ G +IR E+R A R TKGV + + + Sbjct: 758 TLQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGDN 815 Query: 889 ERVVSVERIRESEIVDEA 906 + +V R E + D Sbjct: 816 ATLQAVARNAEDDADDSE 833 >gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec] gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec] Length = 837 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 367/916 (40%), Positives = 515/916 (56%), Gaps = 94/916 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR L++G GNFGS Sbjct: 58 YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE R+ A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG G Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +D+P+ + L+E II+GPDFPT +I+GR G Sbjct: 178 GIAVGMATNIPPHNLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIVGRNG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V ++E+ R Q+VVTE+PYQVN + EKIAELVR+ ++ I Sbjct: 238 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ F VNM+A+ P L Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +V + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + E AR Sbjct: 357 QMISYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARG 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM R LSE+Q AIL+++L RL L R I + Sbjct: 417 QLMAR--------------------------FSLSEIQATAILDMQLRRLAFLERQRIID 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I E IL+S R II QEL V ++ RRTR+V DM ED I R Sbjct: 451 EAAELRAKIDELEAILASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMSVEDLIAR 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVTV+ GY KR +YR+Q+RGGKG G +R++D V F+ +TH +LFF++ Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K LP + A+G+ + NIL+ +Q ERI +M + Y+V ATK G Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDY---QAAPYLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++ L+DF G +A+ L DE++S +D+LL ++ Q +RF + Sbjct: 628 LCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ + D+++SM +V Sbjct: 688 RPM-GRATSGVIGMRFDEADELLSMDVV-------------------------------- 714 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +L + G+ KRT ++ I R GKG+ + Sbjct: 715 -------------------VPESPADLLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKI- 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ G LV V NDQ+ ++ G ++R ++R A R T GV + +VV Sbjct: 755 -VSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVG 813 Query: 894 VERIRESEIVDEAEST 909 V R ++ D T Sbjct: 814 VARNADANDSDGDGET 829 Score = 61.7 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G K+ L+ + + R GG + +RD+D + +V+ +L S Sbjct: 618 PYLVLATKRGLCKKTALTDFDSNRAGG--LVAINLRDDDELISARLVAPGDDLLLVSRNA 675 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + ++ + + ++ + ++ AT G Sbjct: 676 QSIRFHADDEQL-RPMGRATSGVIGMRFDEADELLSMDVVV----PESPADLLVATSGGY 730 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+++ R GK + + + + T G +R + Sbjct: 731 AKRTPLAEYPIQGRGGKGVLTAKIVSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDV 790 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 R R ++GVR I L G QV+ +A A+ + +A Sbjct: 791 RRAQ-RQTMGVRLIDLEAGVQVVGVARNADANDSDGDGETAGSDGTAG 837 >gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] Length = 815 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ T+V++ N G LV V Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana) tropicalis] Length = 813 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 365/871 (41%), Positives = 514/871 (59%), Gaps = 87/871 (9%) Query: 45 LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104 RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+ Sbjct: 9 ARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDF 68 Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164 SLR +L++GQGNFGSVDGD AA RYTE RL K AH +L D+ K+TVDF PNYDGS QEP Sbjct: 69 SLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEP 128 Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224 +VL R PN+LVNG GIAVGMATNIP HNL EVVD C+ ++ +P+ +DALMEII PD Sbjct: 129 LVLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPD 188 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEK 283 FPT +I G G+K+ Y TGRG +V+R H E + + I+V E+PYQVNK + E+ Sbjct: 189 FPTAGIIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQER 248 Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343 +AELV EK++ I+ ++DESD+ G R+VIELKRG +V+LN LY+ T LQ F +NMVA Sbjct: 249 MAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVA 308 Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 L +P L ++ F+ R EVV RRT + L KARDR HVL GLA+A+AN+DE +RI Sbjct: 309 LVDGQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIRI 368 Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463 IR SP P A+ ELM LS+ Q + IL++RL Sbjct: 369 IRESPTPPVAKAELMS--------------------------LYRLSDTQAQEILQMRLQ 402 Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTR 519 RLTGL +D I E + I++ LDIL+ R+ II +EL +V++E RR+ Sbjct: 403 RLTGLEQDKIVAEYKEVMAHIEDLLDILAKPERVSTIIGEELTAVREEFGQTKLGARRSE 462 Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579 I D+ ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ Sbjct: 463 IEHSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQ 522 Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639 LFI +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D Sbjct: 523 LFIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGD 582 Query: 640 ES-SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698 + YV AT G V++ L +F ++G IA+ LD D ++ ++D++L Sbjct: 583 MRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVML 642 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G+ VRF + +R GR + GVRG++L VI+M + Sbjct: 643 FSDGGKAVRFDENDVRPL-GRQARGVRGMTLEDSQSVIAMLVAED--------------- 686 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 + Q +LT +E G+GKRTS ++ Sbjct: 687 -------------------------------------ESQSVLTATENGYGKRTSIVEYT 709 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 R KG+ A S+ N G +VA V+ +D+I+L++D G L+R V EIR RAT+ Sbjct: 710 RHGRGTKGMIAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGRATQ 767 Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAEST 909 GV + + + + ++RI E++ + + Sbjct: 768 GVTLIALDEGATLSGLQRIVENDANENDATD 798 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ V + +G VK+ L + R+ G + D D++ + V+ F Sbjct: 586 FPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLD--DGDYLIGAALTDGQHDVMLF 643 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + QARG + + + + M ED + V+ AT Sbjct: 644 SDGGKAVRFDENDVRPLGRQARGVRGMTL----EDSQSVIAMLVAED----ESQSVLTAT 695 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + ++ + R G IA++ ++++ +++I+L T G VR Sbjct: 696 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 755 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ IR GR + GV I+L +G + + ++ DA+ ++ + Sbjct: 756 VAEIREL-GRATQGVTLIALDEGATLSGLQRIVENDANENDATDTTDEATPP 806 >gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] Length = 814 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 347/885 (39%), Positives = 520/885 (58%), Gaps = 83/885 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++ +N+ Y K AR+ Sbjct: 5 INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YDAL RMAQ++S+R +++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TV FRPNYD S EP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG + +DNP D++ L+ +++GPDFPTGA I G G+ AY TGRGSI IRG + IE+ Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGKGLIEAYTTGRGSIKIRGKAEIEE 244 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 D + +V+ EIPY +NK++++EKIA L+ E RI ++DLRDESDR+G R+V++LK+G Sbjct: 245 RKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKGV 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L++ F +NM+ + +P + +L+ F++ R EVV+RRT + L Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFDLR 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMER------------------ 406 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLT L R + +E N L I+ IL + L Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLR 458 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G+I+ E+ +KD+ TPR+T I+E L + D I ED+V+T+S GY+KR + Y+ Sbjct: 459 GVIRDEITEIKDKYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQ 518 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G + Sbjct: 519 QKRGGKGVAGVSTSGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L +++ E + T + E Y +F T+ G V+R+ + +G IA+ L Sbjct: 579 ANLLPMDKEEFVATALAIREFSF---ERYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTL 635 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+L+V+ ++LL T G RF IS IR GR + GV+GI+L D+V + Sbjct: 636 KEGDELLTVKEIDDNAEVLLATNQGLSNRFHISGIRP-TGRAAAGVKGIALKGQDRVAAG 694 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I+ + Sbjct: 695 VIMTGNGRNE-------------------------------------------------- 704 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +LT+S G+GKRTS + + NR G G+ V+ + G ++ VN +D+++L++ Sbjct: 705 -VLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVNADDELLLLTS 761 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +IR+ V++I RAT+GV++ + V + + S+ + Sbjct: 762 ANKIIRLSVSDISAVGRATQGVMLVRMEGEVTVTGFDLVDPSDPI 806 >gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5] gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5] Length = 928 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 375/937 (40%), Positives = 542/937 (57%), Gaps = 99/937 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M + ++NK Y Sbjct: 2 SESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR +++GQGNFGS+D DPPAA RYTE Sbjct: 62 KSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K H +L DL KDTVD+ NYDGS + P VL AR PN+L+NG GIAVGMATN+ Sbjct: 122 VRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+A +NP I + LM I GPDFPTG +I GR GI +AY TG+G + +RG Sbjct: 182 HNLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIYGRAGILDAYRTGKGRLHVRG 241 Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IE S DRE+IV TE+PYQ NKA ++E+IAELVR+K+I I ++RDESD+ G Sbjct: 242 RYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDKDG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+E Sbjct: 302 MRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + LNKAR R H+L GL +A+AN+DE++ I+ S N AR L+ +W + + Sbjct: 362 VVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGSGSV 421 Query: 428 KDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 ++ S + + LS Q AIL+++L RLTGL +D Sbjct: 422 VAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLEQDK 481 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + E L EI IL +L+ II E++ ++D RRT I++ +D ED Sbjct: 482 LTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDL 541 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + +V+TVS GY K P+ Y AQ+RGGKG+S M+++D + L + STH +VL F Sbjct: 542 IPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLIVTSTHATVLCF 601 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------- 638 + G V+ + + +PI S ARG+ L+N++ LN E +TTI+P P+ Sbjct: 602 TDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVEELSSKGETSAD 661 Query: 639 ----------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 D + +V FAT +G V+R +L F I +G IA+ L+ D+++S Sbjct: 662 VTLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSAR 721 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 +++L G+ +RF + R GR + GVRG+ L + + S+ ++ + Sbjct: 722 ITNGSQEVMLFASSGKAIRFNETDARAM-GRTAKGVRGMRLTADEFIKSLVVIEDDVRE- 779 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 IL E GF Sbjct: 780 ---------------------------------------------------ILIACENGF 788 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT +F NR G G+ A S N GALV V+ D IIL+SDKGTL+R PV Sbjct: 789 GKRTFIDEFNTQNRGGGGVIAIKTSTRN--GALVRATKVDSTDDIILISDKGTLVRTPVE 846 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + R T+GV + +KDE++V++ R+ E +E Sbjct: 847 HVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNE 883 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 100/263 (38%), Gaps = 14/263 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 V + G VKRV L + R G V + + D + I + V+ Sbjct: 674 TQAEPPFVFFATANGTVKRVELKQFANIRSNG--LIAVGLEEGDKLVSARITNGSQEVML 731 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F+S G + A+G + + L E I +++ +D ++ A Sbjct: 732 FASSGKAIRFNETDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDDVRE-----ILIA 783 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRF 708 ++G +R + +F NR G + + + + +DI+L + G VR Sbjct: 784 CENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRATKVDSTDDIILISDKGTLVRT 843 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P+ + +GRN+ GV I L+K +++++MA V H + + + + + + + Sbjct: 844 PVEHVAS-SGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNELIDAMREDGTFEVKGQEQM 902 Query: 769 TEEITSLKNDSSVEGNISEERCQ 791 + + + + S Sbjct: 903 DVDAANSDATETDFDDTSHTETD 925 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + + + + + + + ++L ++ ++TVS G+ K D+ R GKG Sbjct: 516 EIRDNFGDERRTDIIDSRMDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGK 575 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884 AT + + + I L+ + + ++ +D G + + E+ IASR +G V + Sbjct: 576 SATAMKEDDVIDHLI---VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIG 632 Query: 885 TAKDERVVSVERIRE--SEIVDEAEST 909 DE V ++ I + E+ + E++ Sbjct: 633 LNADETVTTILPIPKIVEELSSKGETS 659 >gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] Length = 803 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 375/885 (42%), Positives = 534/885 (60%), Gaps = 84/885 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K ARI G+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YDA R+AQD++ R LL++G GNFGS+DGD AA RYTE R+ K +L Sbjct: 61 YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGMATNIP HNL EV +G Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R + IE+ S + Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQG R+VIEL+ D++L Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+LY++T LQ F V M+AL P L +L ++ R +V+VRRT++ LNKA RA Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q AIL++RL RLTGL R+ I E L I++ IL++ +R IIK E Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILANEARQRQIIKDE 454 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +K + PRR+ I D++ ED I E+MV+T++ GY+KR+ +VYR Q +GG Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623 G G+ +++D+VT + V TH ++LFF+S G Y+ K + +P GS +RG A++N+L Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L GE +TT++ + E ++ + T+ G V+R + ++ I RSG A+ LD D Sbjct: 575 LAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++SV T DIL+ TKLG +RF +R+ R + GVRGI L GD V+ ++ Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVLNT 690 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + E + T+ Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKR + + + R GKG + ++ N+ G +VAV V+++D+++L+S++G +I Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758 Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R +N+I + +A GV + + ++V S+ I +EI +E E Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803 >gi|220903292|ref|YP_002478604.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 855 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 360/902 (39%), Positives = 534/902 (59%), Gaps = 91/902 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +SI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++ +N+ + K ARI Sbjct: 8 QISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 67 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD PAA RYTE R+ + Sbjct: 68 VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSR 127 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L DL K+TVDFRPNYD + QEP V+ ++ PN+L+NG GIAVGMATNIP HNLGE Sbjct: 128 LAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGE 187 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 + D ++D+P +D LME ++GPDFPT + G+ +AY TGRG++ +RG IE Sbjct: 188 LCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGKGLYDAYHTGRGTVKVRGRMEIE 247 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + IV+ EIPY +NK++++EKIA LV +++I I DLRDESDR+G RVVI+LKRG Sbjct: 248 DRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKRG 307 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ++++N LY++T L+S F +NM+A+ +P+ L L FV R EVV+RRT+Y L Sbjct: 308 TIPEIVINALYKFTPLESSFGINMLAVVDNRPQLLNLKSALTCFVDHRREVVIRRTRYDL 367 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL +A+ N+DEVV +IR S +P+ AR LM+R Sbjct: 368 EKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKR----------------- 410 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE+Q +AILE+RL RLTGL R+++ E L +I+ IL + L Sbjct: 411 ---------FELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVL 461 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G +K+E+ +++ TPRRT ++ D++ ED I ED+V+T+S GY+KR L Y Sbjct: 462 RGELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENY 521 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P GS A+G Sbjct: 522 QQQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGV 581 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L GE +TT++ E + Y +F TK G V+R+ S + + ++G +A+ Sbjct: 582 HINNLLPLEDGEWVTTVLALREFA---EDKYFLFVTKRGMVKRSSASLYARCRKTGLMAV 638 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V ++ I+L T G +RF +R GR + GV+GI+L + D V+ Sbjct: 639 GLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPM-GRVATGVKGIALRRQDFVV 697 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + IV D + Sbjct: 698 AGVIVKETDQTTE----------------------------------------------- 710 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I+++S GFGKRTS +R+ +R GKGI V+ + G +V PV D+D +IL+ Sbjct: 711 ---IMSISANGFGKRTSIELYRLQSRGGKGIINFKVT--GKTGPVVGAMPVRDDDSLILL 765 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--------SEIVDEAES 908 + ++R+ ++E+R RAT GV++ + VV +R+ E SE +DE Sbjct: 766 TSANKIVRIGLDEVRSKGRATMGVMLVRLDEGAHVVGFDRVDEGGQTGRDLSEDMDEDAV 825 Query: 909 TE 910 E Sbjct: 826 PE 827 >gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] Length = 857 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 350/891 (39%), Positives = 531/891 (59%), Gaps = 83/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ ++I E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++ +N+ Sbjct: 3 EAQDGQHPQINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++A+YDAL R+AQ++S+R L++GQGNFGS+DGD AA R Sbjct: 63 PHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A L DL K+TVDFRPNYD + QEP V+ + PN+L+NG GIAVGMATN Sbjct: 123 YTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+ D ++DNP +D LME ++GPDFPT + G+ +AY TGRG++ Sbjct: 183 IPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGKGLYDAYHTGRGTVK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ + +V+ EIP+ +NK++++EKIA LV +++I IADLRDESDR+G R Sbjct: 243 MRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+LKRG D+++N LY++T L+S F +NM+A+ +P TL L FV R EVV Sbjct: 303 IVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNRPVLLTLKSALSCFVDHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRT+Y L KA RAH+L GL IA+ ++D+VV +IR S NPE AR+ LM Sbjct: 363 IRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMA---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE+Q RAIL++RL RLTGL R+++ E L +I+ Sbjct: 413 ----------------TFELSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 +L + L +K+E+ +++ TPRRT ++ ++ ED I +++V+T+S GY+ Sbjct: 457 VLDNSEVLRSEMKREIREIRETFVTPRRTEVLTEALGGIDIEDLIPDDEVVITLSRRGYM 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y+ Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P Sbjct: 517 KRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS A+G + N+L L +GE +TT++ E + Y +F T+ G V+R+ S + + Sbjct: 577 GSRTAKGVHINNLLPLEEGEWVTTVLALREFA---EDKYFLFVTRRGMVKRSSASLYARC 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G +A+ L DE++ V ++N I+L T G +RF IR GR + GV+GI+ Sbjct: 634 RKTGLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPM-GRVATGVKGIA 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V++ ++ D + Sbjct: 693 LRRQDSVVAGVVLKDVDQTTE--------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 I+++S G+GKRT +R+ +R GKGI V+ + G +V PV Sbjct: 714 -----------IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTA--KTGPVVGAMPVR 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 DND +IL++ ++R+ V+E+R RAT GV++ + RVV +R+ E Sbjct: 761 DNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRLDEGARVVGFDRVDE 811 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 57/266 (21%) Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700 ++ V+ ++ G ++R L ++ Q R G A+ D + T T + L T Sbjct: 502 PDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFT 561 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G+ + + + R + GV Sbjct: 562 NKGRMHQLKVHQV-PEGSRTAKGV------------------------------------ 584 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + ++ ++++ L V+ +G KR+S+ + Sbjct: 585 -----------HINNLLPLEEGEWVTTVLALREFAEDKYFLFVTRRGMVKRSSASLY--- 630 Query: 821 NRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R K G+ A + + LV V P+ +++ I+L + G IR +IR R G Sbjct: 631 ARCRKTGLMAVGLRE---DDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPMGRVATG 687 Query: 880 VVIFSTAKDERVVSVERIRESEIVDE 905 V + + + VV+ +++ + E Sbjct: 688 VKGIALRRQDSVVAGVVLKDVDQTTE 713 >gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] Length = 848 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 369/898 (41%), Positives = 553/898 (61%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ Y Sbjct: 3 EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ ++YD++ RMAQ WS+R ++++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK + +L D+ KDTVD R N+D + EPVVL R PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G +A IDN +ID+D LM+ I PDFPTG +I G G+K+A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIYGYDGVKDAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE+ RE I+V+EIPYQVNKA M++K AELV EK+I I+++RDESDR G R+V Sbjct: 243 AKSVIEEVK-GRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA RAH+L GL IA N+DEV+ IR S N + AR +L+ R Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E +++ I + DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R IIK EL +KD+ RR+ I DM ED I +VVT+S+ GY+KR Sbjct: 456 ANEPRRYEIIKGELAHIKDKYGDDRRSVIEYAGGDMSIEDMIPDTKVVVTISNAGYLKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+A+ N++++ Q +++ + + DE+ N+ YV+ ATK G V++ L + + Sbjct: 576 NTKGRAMQNLINIEQDDKVKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L K G+ +RF + R GR + GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALKSGKSIRFEEAKTRPM-GRTASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+VI M V +++ Sbjct: 695 QHDKDEVIGMVAVNDMESN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKGFGKR+ D+RI+NR GKG++ ++S+ + G LVA+ V+ Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D++ +++++ G IR+ V ++R+ RAT+GV + + ++ + +V ++ E V E Sbjct: 761 DSNDLMIINRSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEVPED 818 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 98/253 (38%), Gaps = 13/253 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + V+ + G VK+ L Y R G + + +++ D + + + + + V+ Sbjct: 606 EAYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDELLEAKLTTGDSQVM 663 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 G + + P R + + ++L + M D S ++ Sbjct: 664 LALKSGKSIR---FEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESN----ILV 716 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVR 707 ++ G +R+KL D+ G + + + L + ND+++ + G +R Sbjct: 717 VSEKGFGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINRSGLTIR 776 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + +RV GR + GVR I++ D + ++A V H + ++ ++ + S Sbjct: 777 MAVEDLRVM-GRATQGVRLINIKDNDSIAAVAKVAHEEEVPEDLDAQVEDGTEIENDASE 835 Query: 768 DTEEITSLKNDSS 780 + + ++ Sbjct: 836 NESDEQDGNENNE 848 >gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] Length = 815 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b] gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b] Length = 855 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 372/891 (41%), Positives = 555/891 (62%), Gaps = 82/891 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ + K ARI Sbjct: 42 NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++++Y A+ RMAQD+++R LI+G GNFGS+DGD AA RYTE R+ K Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 LL+D+ KDT+D+R N+D S EPVVL A+ PN+L+NG GIAVGMATNIP HNLGE Sbjct: 162 ITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVDG +A+IDNP+I +D L+ I+GPDFPTG +I G+ GI +AY TGRG + + G +E Sbjct: 222 VVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEVE 281 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + +E I+VTE+PYQVNKA ++EKIA+LVR+K+I I+DLRDE+DR G R+VIELK+G Sbjct: 282 TSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKKG 341 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +++ILN LY++T LQ+ F V M+AL P L IL+ ++ R EV+ RRT++ L Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRTEFEL 401 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA++RAH+L G IA+ N++EV+RIIR S + AR EL+ + Sbjct: 402 KKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAK----------------- 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 SE+Q +AIL++RL RLTGL RD I E N L + I+E ILS S++ Sbjct: 445 ---------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKI 495 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 GIIK+E L +K++ RRT I ++ ED I E++VVT++ GYVKRV + YR Sbjct: 496 YGIIKEEGLKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +Q+RGG G + ++D V D++I ++L F++ G V+ KV+ +P QARGK Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + NI++L+ E+++TI+ E E N + F T++G V++++L+ F I ++GK A++ Sbjct: 616 IGNIINLDDDEKVSTIIKVREFE---KNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIR 672 Query: 678 LDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L+ DE++ + + E++I TK G +RF +R G + GVRGI+L D++ Sbjct: 673 LNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSM-GTGAAGVRGINLRDEDKI 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + AI+ E+ Sbjct: 732 VGAAIISS------------------------------------------------EMNK 743 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + ILT++E+G+GKRT ++R+++R GKGI +++ + G +V V V D+D+I+L Sbjct: 744 DDARILTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNE--KTGKIVDVKIVKDDDEIML 801 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +GTLIR V ++ + R+ GV I +E++ S+ +I E +D+ Sbjct: 802 ITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEEPKLDDE 852 >gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] Length = 815 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23] gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23] Length = 843 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 365/893 (40%), Positives = 537/893 (60%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM + + Y Sbjct: 6 DNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 66 KKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL K ++DDL K+TVD PN+D S +EP V+ + PN+LVNGG GIAVGMATN+P Sbjct: 126 ECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATNMP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNLGEV+DGC A IDNPDID + LM+ I GPDFPTGA I G G+K+AY TGRG IV+R Sbjct: 186 THNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIYGLQGVKDAYETGRGRIVMR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA ++ IA+L + +I +A++ DES RQG R+V Sbjct: 246 AKAEIESGDT-HDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGMRIV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ++ KR A+A+V+LN+L++ T+LQS FSVN +AL +P +L +K FV R +V +R Sbjct: 305 VDCKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA++RAH+L GL IAV N+DEVV IIR S P A+R L R Sbjct: 365 RTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEAR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E+Q++AI+++RLA+LTGL D + E + L I E +IL Sbjct: 414 ---------------FELDELQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R ++K +L VK++ RRT I+ + ED + +V+T+SH+GY+KR Sbjct: 459 DNPERCKEVMKADLQEVKEKYGDERRTEIIPFDHEFNAEDFYPDDPVVITISHMGYIKRT 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS + Q RGG G RD DF ++ + H ++LFF+ G Y +K + +P G Sbjct: 519 PLSEFHEQGRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDK 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDES--SWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L++ + I ++ N+ YVVFATK G +++ L + + Sbjct: 579 NSKGRAIQNMLNIEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPR 638 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ ++ D+++ V N++LL + G+ VRF + +RV GR S GV G+ L Sbjct: 639 ANGVIAININEGDQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVM-GRVSTGVIGMRL 697 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 G D+V+ M V + Sbjct: 698 DGGDDEVVGMVCVNDPNT------------------------------------------ 715 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + I+ VSE G+GKR+ D+R ++R KG++ +++ + G LVA+ V Sbjct: 716 ---------ETIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITE--KTGRLVAIKVVT 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRES 900 D + +++++ G LIR+ V ++R+ RAT+GV + + K++ + SV ++ S Sbjct: 765 DENDLMIINKSGVLIRLKVADVRVMGRATQGVRLINLTKKNDSIASVCKVMHS 817 >gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] Length = 815 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] Length = 824 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 364/907 (40%), Positives = 550/907 (60%), Gaps = 92/907 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 EPNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY +L MAQ+WS+R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A +L D+ KDTVDF PN+D + +EP V+ ARYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKIAMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HNL EV++ V +I+N + +D +++I++GPDFPTGA ILG GI++AY TG Sbjct: 182 NIPPHNLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTG 241 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RG I +R VS IE + +IVVTE+PY VNKA ++EKIAELV++K++ I DLRDES+ Sbjct: 242 RGKIKVRAVSEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESN 301 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G RVVIEL+R +A+VILN+LY++T LQ F VNM+AL +P+ ++ +L+ ++A Sbjct: 302 REGMRVVIELRRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAH 361 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 +E+VV RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N A+ EL++R Sbjct: 362 QEDVVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR---- 417 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS+VQ +AI+++RL LTGL R+ + E N L +I Sbjct: 418 ----------------------FGLSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKI 455 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+ +LLG+IK+E+L V+ + RRT ++ + ED I +ED+++ ++ Sbjct: 456 EYFESILADNKKLLGVIKEEILIVEGKYKDDRRTGFIQDDEMED-EDLIQKEDIIIAMTK 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 LGY+KR+ + Q RGGKG G+ D+DF+ D+ + +TH + FF++ G VY K + Sbjct: 515 LGYIKRMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P S ARG A++N+L L E+I+ I+P E+S Y+ TK G +++ +++ Sbjct: 575 KIPEASRTARGIAIVNLLQLQPDEKISAIIP---SEASSGEGYLFMVTKKGTIKKCRINL 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I ++G A+ L DE++ V+ ++D+++ +K G C+R IR GR + GV Sbjct: 632 FDNIRKNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAM-GRGATGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L + D+VI M + + Sbjct: 691 RGMRLNEADEVIGMQLASQGE--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++L VSE G+GKRT +F++ NR GKGI ++ G LV Sbjct: 712 --------------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK--DNDKTGKLVGA 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902 VN++ +I+L++ +G +IR+ V+ I + RA GV + + D ++ S+ ++RE + Sbjct: 756 KLVNEDREILLITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKN 815 Query: 903 VDEAEST 909 + E + Sbjct: 816 TESVEES 822 >gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] Length = 815 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] Length = 815 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1] gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] Length = 815 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ T+V++ N G LV V Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] Length = 815 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] Length = 827 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 388/901 (43%), Positives = 545/901 (60%), Gaps = 86/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + +EEKG+T V I+ EM+ +YL Y+++VI+GRA+PD+RDGLKPVHRR+LF +M Sbjct: 2 ENNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRH 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y+K AR+ G+V+GKYHPHG+A++YD + RMAQD+SLR L +GQGNFGS+DGD PAA Sbjct: 62 NRPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL A LL+DL K+TV F PNYD S P VL +++PN+LVNG GIAVGMA Sbjct: 122 MRYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNLGEV+DGC+ +I NPD ++ LM+ I+GPDFPT VI GR GI AY GRG Sbjct: 182 TNIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIAGREGILQAYKKGRGI 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 + I+ V+ I + DRE+I++TEIPYQVNKA ++E +A+LVR+K+I I+D+RDES R+G Sbjct: 242 VTIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366 R+V+ LKRG +A VILN+LY+YT +Q+ F + M+AL+ +P F L G+L+AFV R Sbjct: 301 MRIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHRR 360 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV +R + L KA++RAH+L GL A+ +++EV++ IR S AR LM + Sbjct: 361 DVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSK------ 414 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 SE Q AILE+RL RLTGL RD I EL L +I Sbjct: 415 --------------------FEFSERQAVAILEMRLQRLTGLERDKIVAELAELMKQIDW 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +LS + II EL VK PRRT+I L D+EDED I E MVVTV++ G Sbjct: 455 LKFVLSDVREIYKIIVSELEDVKKRYADPRRTQITGDLSDLEDEDLIADEQMVVTVTNTG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 +KR+P+ YR Q+RGGKG G+ ++ED+VTD+F ST T +L F+ G VY KV RL Sbjct: 515 LIKRIPVEEYRVQKRGGKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRL 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+G+ ++GK+L N++ L+ GE + I+P E N Y V T+ G +++ L F Sbjct: 575 PLGTRTSKGKSLANVVQLSNGESVRAILPVNEFS---ENKYAVMLTEKGVIKKTSLDAFA 631 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +G IA+ D D ++ V+ ++DI + TK G +RF + +R GR + GV+ Sbjct: 632 NPRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVREM-GRTARGVKA 690 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+LAK D V++M ++ D Sbjct: 691 ITLAKDDVVVAMEVLEKNTKDT-------------------------------------- 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL V+ KG+GKR+ + ++RI +R G GI + +++G ++ Sbjct: 713 -------------ILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTT--DKVGLVIGTKK 757 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905 V DN ++IL +DKG +IR+ V +I + R T+GV + + + DE V V + E E E Sbjct: 758 VADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETATE 817 Query: 906 A 906 Sbjct: 818 E 818 >gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 843 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 390/900 (43%), Positives = 558/900 (62%), Gaps = 68/900 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K IT ++I +E+ +SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +G WN+ Sbjct: 2 NDFAKEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ + +R L++GQGNFGSVDGDP AA R Sbjct: 62 NYKKSARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ LL DL K+TVD+ NYDG+ P +L AR PN+LVNG GIAVGMATN Sbjct: 122 YTEVRMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A IDN DI ++ LM+ I GPDFPT A+I G+K AY+TGRG I Sbjct: 182 IPPHNLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDSGGLKEAYSTGRGKIY 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR S IE RE IV+ EIPYQVNKA +LEKIAEL + KRI I +LRDESD+ G Sbjct: 242 IRARSEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+E+KR A ++VILN LY TSLQ+ F +NMVAL+ +P+ +L IL AFV R V Sbjct: 302 RIVVEIKRDAISEVILNNLYSLTSLQTSFGINMVALHQGQPKIMSLKDILSAFVCHRRAV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RR + L KAR R H+L GLAIA+ N+D V+++IR S + A L+ SWN ++ Sbjct: 362 VIRRVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVF 421 Query: 429 DLIDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 D+ + L++ Q +AIL+L+L +LT L + + E +SL Sbjct: 422 DMKQRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IK + IL L+ +I+QELL +++E + RRT I + ++ E+ I ++D+VV Sbjct: 482 LEKIKNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S+ GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y Sbjct: 542 TLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRIYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+RLP S +RGK +IN+L L+ ERIT I+P + V AT G V++ Sbjct: 602 MKVYRLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQ---VFMATSSGVVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L++F + G IA+ L+ DE++ + N+++L T G+ VRF + +R GR+ Sbjct: 659 PLTEFSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRSV-GRS 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 ++GV+GI L +GD+V+S+ I + Sbjct: 718 AIGVKGIHLLQGDRVVSLIIPKDKSS---------------------------------- 743 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILTV+ GFGKRT+ ++ I +R+ +G+ + V++ N G Sbjct: 744 -------------------ILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERN--GN 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ VN +DQI++++D G L+R V+E+ I R T+GV++ TA +E VV ++ + ES Sbjct: 783 VIGAVQVNQSDQIVMITDLGRLVRTRVSEVNIIRRNTQGVMLIRTACNECVVGLQCVVES 842 >gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265] gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265] Length = 827 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 373/898 (41%), Positives = 540/898 (60%), Gaps = 85/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I V+I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + Sbjct: 2 QRQRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GK+HPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K+TV++ N+D S +EP VL + PN+LVNG GIAVGMATNIP Sbjct: 122 EVRMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVVDG A+IDNPDI+++ LM+ + PDFPTG +I G G++ AY TGRG +VIR Sbjct: 182 PQNLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIYGYEGVRLAYTTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE IVVTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+ Sbjct: 242 ARALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQFYIQHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTG+ R I E I+E DI Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R + II+ ELL V++ RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LASPERQMQIIRTELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G +++DF+ +F+ STH +LFF+S G Y KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG++L NI+ LN GE I T + + +++ AT G V++ L +F + R Sbjct: 576 RAARGRSLANIMELNPGETIKTYINIRNFD---EPGFIMMATADGIVKKTALEEFSRPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ +D+ D +L ++ ++L G VRFP S +R GR ++GV+GI+L Sbjct: 633 NGIAAITIDTGDALLDARLTDGDHQVILAKSSGLVVRFPESQVRPM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G++ ISM D Sbjct: 692 RGEKCISMVTTKRLDTA------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+ Sbjct: 709 ---------LLAVTDNGFGKRSKVEDYRLTKRGARGVITLKAHE--KIGALVGLLDVNDD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D +I+++ G + R V++IRI R T GV + + + V ++ R+ +++ + E+ Sbjct: 758 DDLIIITSHGIVNRQHVSDIRITGRNTSGVRLVRLMEGDAVSALARVPKTDEDTDTET 815 >gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118] Length = 820 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 361/905 (39%), Positives = 540/905 (59%), Gaps = 86/905 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY TG+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ ++ Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 K+ +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ I++++ G +IR ++ R+T GV + D +V S+ + + Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTEAEQN 815 Query: 905 EAEST 909 + + Sbjct: 816 QTDDD 820 >gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084] gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084] Length = 929 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 368/874 (42%), Positives = 535/874 (61%), Gaps = 85/874 (9%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ NK + K A GEV+ Sbjct: 90 HEMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVI 149 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHG++A+YDA+ R+AQ +S+R L++G GNFG++DGD AA RYTE RL + A L Sbjct: 150 GKYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMEL 209 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 L DL KDT+D++ NYD S QEPVVL AR+PN+LVNG GIAVGMATNIP HNL E + Sbjct: 210 LRDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAV 269 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +IDNPD +D LM ++ GPDFPTGAVI+G GI+ AY TGRG I IR +H+E T Sbjct: 270 CMLIDNPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVESTKTG 329 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 R ++V TE PY VNK + EKIA+LV EKR+ I+D+RDES+R+G R+VIELK+GA +V Sbjct: 330 RNKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEV 389 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 +LN LY+Y++LQS F + +AL P TL +L+ ++ + +VV RRT++ L KAR Sbjct: 390 VLNNLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARA 449 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAH+L GL +A+ ++DEV+ IIR S A L++R Sbjct: 450 RAHILEGLLLALDHIDEVISIIRSSRTDTQASERLIER---------------------- 487 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 ++ QT AILE+RL RLTGL RD I+ EL+ L I+ D+L+ ++L +IK Sbjct: 488 ----FGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVIK 543 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 E+ + ++ RRT I + + ++ ED I EDMVVTV+H GYVKR+P++ YR+Q+RG Sbjct: 544 SEMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRG 603 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG G+ ++D DFV DLF+ STH V+FF++ G VY+ KV LPIGS ARG AL+N+L Sbjct: 604 GKGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVL 663 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L +GE T ++ E + Y++FAT +G V++ +SD+ + R G IA+ L D Sbjct: 664 PLGEGEHPTAVITTREFP---ADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDD 720 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E+++V ++L +++G+ + F S +R GR++ GVRGI+L +++ M I Sbjct: 721 ELVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TGRDTSGVRGITLKDDVKMLGMEITN 779 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 +L Sbjct: 780 GNGD-----------------------------------------------------LLV 786 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 ++E+G+GKRT +++ R G+G+ ++ ++ G LVA V ++++VS++G + Sbjct: 787 MTERGYGKRTPVFEYPEHKRGGQGVATIAMT--SKKGNLVACRVVGPQHELMIVSEEGVV 844 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 IRV +I RAT+GV I + ++++V +V R Sbjct: 845 IRVKTADISKLGRATQGVKIMNMGENDKVSAVAR 878 Score = 92.5 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 113/307 (36%), Gaps = 29/307 (9%) Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + ++ I+ L + + E + + V T+ R + + Sbjct: 395 YKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTR-----RTRFD-LAKAR 448 Query: 670 RSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRF-----PISAIRVFAGRN 720 I + LD DE++S+ ++ + RF +AI R Sbjct: 449 ARAHILEGLLLALDHIDEVISIIRSSRTD---TQASERLIERFGFTKQQTTAILEMRLRR 505 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 G+ + + + + A Y++ + + + + + E K ++ Sbjct: 506 LTGLERDKIQEE-----LDGLRRAIEYYEDLLADSRKILEVIKSEMSEIGEKYGDKRRTT 560 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ++L +E ++TV+ G+ KR +R R GKG++ + + + Sbjct: 561 ISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVED 620 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897 L F + +D ++ +++G + RV V+E+ I SR +G + + + E +V Sbjct: 621 L---FVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITT 677 Query: 898 RESEIVD 904 RE + Sbjct: 678 REFPADE 684 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 59/439 (13%), Positives = 159/439 (36%), Gaps = 43/439 (9%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 + + L+ R L +A+ +++ +I+ + + +R+ + L Sbjct: 513 KIQEELDGLRRAIEYYEDL---LADSRKILEVIKSEMSEIGEKYGDKRRTTISDAPVVL- 568 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + ++ M ++ + L +A R + SL + Sbjct: 569 -----DVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVEDLFV 623 Query: 492 SSRSRLLGIIKQELLSVKDELD-------TPRRTRIVEGLLDMEDEDC--------IVRE 536 +S + + ++ R + +V L E E + Sbjct: 624 ASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREFPAD 683 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + ++ + G VK+ +S Y RR G + ++ +D + ++ V V+ S +G Sbjct: 684 EYLMFATANGMVKKTAMSDYDKSRRDG--IIAINLKRDDELVNVRRVKPGQKVILCSEVG 741 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 K ++ P R + + ++L ++ + E + N ++ T+ G Sbjct: 742 ---KAILFDESEVRPTGRDTSGVRGITLKDDVKMLGM------EITNGNGDLLVMTERGY 792 Query: 657 VRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R + ++ + R G+ IAM + +++ ++++++ ++ G +R + Sbjct: 793 GKRTPVFEYPEHKRGGQGVATIAMTSKKGN-LVACRVVGPQHELMIVSEEGVVIRVKTAD 851 Query: 713 IRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 I GR + GV+ +++ + D+V ++ + A + +SA + D + Sbjct: 852 I-SKLGRATQGVKIMNMGENDKVSAVARMVAHKKKAAKANPMQRSLDLSAAGARDASDED 910 Query: 771 EITSLKNDSSVEGNISEER 789 + + + + ++ Sbjct: 911 PVDIGDEEELDDSLLEDDE 929 >gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183] gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183] Length = 839 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 348/917 (37%), Positives = 502/917 (54%), Gaps = 94/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + I V I E+Q SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTEVTTGGSGP-GERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ W++R L++G GNFGS Sbjct: 60 YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSR 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECRL A +L D+ K+TVDF PNYDG EP VL AR+PN+LVNG Sbjct: 120 GNDPAAAMRYTECRLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G +DN + + L++ I+GPDFPT A+I+GR G Sbjct: 180 GIAVGMATNIPPHNLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIVGRKG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V IE+ R +VVTE+PYQVN + KIAELV+E ++ I Sbjct: 240 IEDAYRTGRGSITMRAVVEIEEIQ-GRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LK+ A A V+LN LY++T LQ F NM+AL P L Sbjct: 299 ADVRDETSGRTGQRLVIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +V + +V+VRRT++LL KA +RAH+L L A+ ++EV+ +IR S + + A+ Sbjct: 359 QFIRYWVDHQIDVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQE 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + EVQ +AIL+++L +L L R I + Sbjct: 419 GLMA--------------------------LLQIDEVQAQAILDMQLRKLAALERQAITD 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L EI + +IL+S R I+++EL + + RRT+IV D+ ED I Sbjct: 453 EYERLMAEIADFNEILASPERQRRIVREELEPIVERYGDERRTQIVPFDGDVSYEDLIPE 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR + YR Q+RGGKG G ++ +D V F+ +TH +LFF++ Sbjct: 513 EDIVVTITRGGYAKRTRVDAYREQKRGGKGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNK 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G +RG+ + N+L+ E I ++ + + Y+V AT+ G Sbjct: 573 GRVYRAKAYELPEGGRDSRGQHVANMLAFQPEEHIAEVLDLRDYDV---APYLVLATRQG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ L DF G IA+ L DE+++ +D+LL Q +RF + Sbjct: 630 KVKKTALKDFDSPRTGGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADDEQL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ G ++ M ++ D D Sbjct: 690 RPM-GRATSGVIGMRFDTG-HLLDMHVIRDGDED-------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +L +E G+ KRT + + R GKG+ + Sbjct: 722 --------------------------VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKIV 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V D + ++ G +IR EI+ + R T GV + + A+ + VV+ Sbjct: 756 QA--RGKLVGALMVRPEDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVA 813 Query: 894 VERIRESEIVDEAESTE 910 + R ES + +E E+ + Sbjct: 814 IARNVESSMEEEPEAGD 830 >gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] Length = 865 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 342/918 (37%), Positives = 538/918 (58%), Gaps = 69/918 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S + E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I NP I+ L EII+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ + TG+GSI +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK+ Sbjct: 241 IRETFKTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + + Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L LS +Q+ AIL+++L RLT L D Sbjct: 421 AREKL--------------------------QNEHKLSSIQSDAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I+ E N L +I IL+S+ R+ II +EL + + +PR+T I++ ++D D Sbjct: 455 IKEEHNELTRKINFYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + VV ++ GY+KR+P++ + + RG +G++G +++D V + H ++L F Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+++ ++ Y++ T Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFV---DDRYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ +K G + F I Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDI 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L +GD ++SM ++ D +I + Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT-------------- 736 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ +E ++L S G GKR FR+ R+G G+RA Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + + ++++LV++KG ++R ++I SRA GV + + Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841 Query: 891 VVSVERIRESEIVDEAES 908 + V + +I ++ ++ Sbjct: 842 LSEVVLVPREQIEEKDQN 859 >gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough] gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4] gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4] Length = 856 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 345/891 (38%), Positives = 534/891 (59%), Gaps = 83/891 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ + K AR Sbjct: 24 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG++A+YDA+ RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 84 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 143 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A + D+ K+TVDFRPNYD + EPVVL R PN+L+NG GIAVGMATNIP HNLG Sbjct: 144 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 203 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ + + ++D+ +D LM+ ++GPDFPTG + G+ +AY TGRG++ +RG I Sbjct: 204 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 263 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ + IV+ EIPY +NK++++EKIA LV E+RI +ADLRDESDR+G RVVI+LKR Sbjct: 264 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 323 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G D+++N LY+YT L+S + +NM+A+ +P+ L L F+ R E+++RRT+Y Sbjct: 324 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 383 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LMQR Sbjct: 384 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 427 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q++AIL++RL RLT L + + +E L +I+ IL + Sbjct: 428 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 477 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L ++++E ++D T RRT ++ + ED I +D+V+T+S GY+KR L Sbjct: 478 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 537 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ QRRGGKG +G+ D+DFV + + H +L F++ G +++ KV ++ GS A+G Sbjct: 538 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 597 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+L L + E +TT++ E + + +F TK G V+R+ S + + + G IA Sbjct: 598 VHIANLLPLEKDEWVTTVLSVREFA---EDRFFLFVTKRGMVKRSSASLYARARKGGLIA 654 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V ++ ++LTT G +RF +R GR++ GV+G++L+ D+V Sbjct: 655 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDRV 713 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ A++ D + Sbjct: 714 VACAVLPGDDTSTE---------------------------------------------- 727 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I+++S G+GKRT +R+ +R GKG++ V+ + G ++ PV D++ ++L Sbjct: 728 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 781 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +IR+ V+E+R RAT GV++ + VV +R+ E E+V+E+ Sbjct: 782 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEES 832 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 136/421 (32%), Gaps = 25/421 (5%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL K +L + + + E IR + A + + + Sbjct: 450 EHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTY----ATKRRTEVLMDE 505 Query: 425 SDIKDLIDLIDDSS-----YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + DLI D G L Q + +A L D ++ L + Sbjct: 506 LEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTT 565 Query: 480 LGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +L + + + K + + ED Sbjct: 566 TNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDR 625 Query: 539 VVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ G VKR S+Y R+GG V +RD+D + + + V+ + G Sbjct: 626 FFLFVTKRGMVKRSSASLYARARKGG--LIAVGLRDDDELIMVREIHNDDHVVLTTGGGM 683 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + P P R + ++L+ +R+ P D++S ++ + +G Sbjct: 684 AIR---FACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTE---IMSISSNGYG 737 Query: 658 RRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R ++ + + + D ++ + ++L T + +R + + Sbjct: 738 KRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKIIRMSVDEV 796 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR ++GV + L +G V+ V + + TE Sbjct: 797 RSV-GRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSEQKTAPEGGDAGTEGTA 855 Query: 774 S 774 Sbjct: 856 G 856 >gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] Length = 931 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 349/918 (38%), Positives = 522/918 (56%), Gaps = 85/918 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E + + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M Sbjct: 58 EAQAAVAAPVAHRVDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYD 117 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++ Y KC+R+ G+VMG+YHPHG++AIYDAL R+ Q WS+R L++GQGNFGS Sbjct: 118 GGYRPDRGYNKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGN 177 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTECR+ A L+ D+ ++TVDF PNYDG +P VL +R+PN+LVNG GI Sbjct: 178 DGAAAPRYTECRMAPLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGI 237 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238 AVGMAT IP HNL EV D ++ NP+ L+ + I GPDFPTGA+I+G+ G++ Sbjct: 238 AVGMATQIPPHNLREVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKRGVE 297 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 +AY TGRGSI +R V ++E+ R+ +VVTE+PYQVN A+ EKIA LV++ ++ IAD Sbjct: 298 DAYRTGRGSITMRAVVNVEEIQ-GRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIAD 356 Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P + Sbjct: 357 IRDETSGRTGQRLVIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPISAF 416 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 ++ +V + +V+VRRT++ L++A R H+L GL A+ LDEV+ +IR SP + AR L Sbjct: 417 IRYWVEHQIDVIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGL 476 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 ++ + + E+Q AILE++L RL L R I + Sbjct: 477 IE--------------------------LLDIDEIQANAILEMQLRRLAALERQRIIEQH 510 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + L +I + DIL+ R I+ EL + ++ RR++IV DM ED I ED Sbjct: 511 DELQSKIDDYKDILAKPERQRQIVSDELAEIVEKYGDDRRSQIVPFDGDMNMEDLIPEED 570 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT++ GYVKR +S YR+QRRGGKG G +R +D V F STH +LFF++ G Sbjct: 571 VVVTITRGGYVKRTKVSEYRSQRRGGKGVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGR 630 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K + LP GS ++G+ + N+L+ GE+I +M ++ Y++ AT++G V Sbjct: 631 VYRTKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVMALRTYA---DSEYLLLATRNGLV 687 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRV 715 ++ +LS++ G IA+ L DE++ T ++D+LL ++ GQ VRF + +R Sbjct: 688 KKTRLSEYDSPRSGGLIAVNLRDGDELVGAGLATHDDDVLLVSRKGQAVRFAATDDSLRP 747 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR++ GV G+ +GD+++SM +V + + Sbjct: 748 M-GRSTSGVTGMKFREGDELLSMNVVPKGANEVERG------------------------ 782 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ + V E G KRT ++ R+ G++ +S+ Sbjct: 783 ------------------ADEKLCVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISER 824 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G LV V + D++++V +KG ++R V E+R R T+GV + K + +V+V Sbjct: 825 --GGDLVGALVVENRDEVMVVMEKGKIVRSAVAEVRETGRNTQGVQFATPGKGDSIVAVA 882 Query: 896 RIRE---SEIVDEAESTE 910 R E EI D+A +E Sbjct: 883 RNAEKDSEEIDDDAVVSE 900 Score = 63.7 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 99/266 (37%), Gaps = 14/266 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 + ++ + G VK+ LS Y + R GG V +RD D + + + VL Sbjct: 671 TYADSEYLLLATRNGLVKKTRLSEYDSPRSGG--LIAVNLRDGDELVGAGLATHDDDVLL 728 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-----DESSWNNL 646 S G + P R + + + +G+ + ++ P+ + + L Sbjct: 729 VSRKGQAVRFAATD-DSLRPMGRSTSGVTGMKFREGDELLSMNVVPKGANEVERGADEKL 787 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKL 702 V ++G +R + ++ R+ + D ++ +++++ + Sbjct: 788 CVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGD-LVGALVVENRDEVMVVMEK 846 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G+ VR ++ +R GRN+ GV+ + KGD ++++A D++ + + + Sbjct: 847 GKIVRSAVAEVRE-TGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDDDAVVSETNEAA 905 Query: 763 RLISGDTEEITSLKNDSSVEGNISEE 788 T + + E Sbjct: 906 ESTQDATHAPDDESASTENNESGDSE 931 >gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104] gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104] Length = 839 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 344/901 (38%), Positives = 512/901 (56%), Gaps = 92/901 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR+ Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D ++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVR------------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRT+ ++ + R GKG+ Sbjct: 720 ----------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 V 894 + Sbjct: 816 I 816 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G VK+ L+ + + R GG + +RD D + + S +L Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + + P R + + + N + + ++ Y++ AT Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R + ++ R GK + + ++ +++++ T G +R Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R AGR + GVR ++L +GD ++++A AD S Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVEESDGAAGSDG 839 >gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 871 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 358/899 (39%), Positives = 537/899 (59%), Gaps = 85/899 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD A Sbjct: 63 SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+PTHNL EV+DGC A IDNPDID + LM+ I+ PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+R + IE ++IV++EIPY VNKA ++E IA+LV+E R+ I++ DES RQ Sbjct: 243 RIVLRAKAEIESDES-HDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL +P TL +K FV R Sbjct: 302 GMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRTKY L KA++RAH+L GL IA N+DEVV+IIR S P A+R L +R Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RL++LTGL + + E L I Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIAR 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL ++K EL VK++ RRT I+ + ED + +V+TVSHLG Sbjct: 456 LQLILDDPEECKRVMKLELEEVKEKFGDVRRTEIIPDEHEFNAEDFYPNDPVVITVSHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PLS + Q RGG G G RD+DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+L+++ + + + D N Y+VFATK+G V++ L Sbjct: 576 PEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+ + DE++ V +N +++ + G+ V F + +R GR + GV Sbjct: 636 YSRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTM-GRTATGV 694 Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ L GD V+ M +V + Sbjct: 695 RGMRLDGGDDAVVGMIVVNDPET------------------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA Sbjct: 718 --------------ETVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNIT--DKTGKLVA 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 + V D++ +++++ G IR+ V R+ RAT+GV + + K++ + SV +++ S+ Sbjct: 762 IKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSD 820 >gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] Length = 815 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M] gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M] Length = 839 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 344/918 (37%), Positives = 514/918 (55%), Gaps = 93/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++N D L A+ E ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V++RRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARV 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRI+ ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ E D+LL + GQ +RF + + Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDRLLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT ++ + R GKG+ Sbjct: 723 -------------------------YLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIVDE-AESTE 910 + R E + AE+T+ Sbjct: 816 IARNAEENADEAVAEATD 833 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 13/233 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ + + R GG + +R ED + + S+ +L Sbjct: 616 KSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSEEDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + + P R + + + N +R+ ++ Y++ Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVR------EGTYLLV 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R GK + + ++ ++++ T G +R Sbjct: 727 ATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R AGR + GVR ++L +GD ++++A +AD S+ Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTDESS 838 >gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] Length = 859 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 548/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 2 TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA R Sbjct: 62 PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG + Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR + IE+ + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EV Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+ Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665 G+ A+G+A+ N+L+++ +++ + D+ N+ Y++F TK G +++ L F Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+ Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693 Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 G++L D+V+ M + H + Sbjct: 694 GMTLDDDGEDEVVGMISIKHPE-------------------------------------- 715 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902 + V D + +++++ G IRV V ++ I RAT+GV + +K + + SV + E Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVVSEEE 820 Query: 903 VDEAE 907 ++AE Sbjct: 821 ENKAE 825 >gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] Length = 815 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 546/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] Length = 836 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++E IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GS Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EE Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ + R+ II EL+ ++++ RRT + + ++EDED I ED++VT++H G Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + + Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L GD +I A + Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ +L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905 V ++ +++V+DKG +IR V + R+ GV + D V ++ ++ + + Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818 Query: 906 ----AESTE 910 AE E Sbjct: 819 TEASAEEAE 827 Score = 52.1 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 17/231 (7%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VKR P++ ++ R G + + + D + ++ IV +++ + LG Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV + A A + L G+ + P ED+ V+ ++ G ++ Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725 Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 S++ I G + +K + + + T + D+++ T G +RF + ++ Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R+++GV I + V +M V A+ D + + Sbjct: 784 QTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 834 >gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii] Length = 829 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 342/914 (37%), Positives = 512/914 (56%), Gaps = 92/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + +DN + L A+ E ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I+ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G +A+ L DE++ C+ + D+LL + GQ +RF + + Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D ++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 723 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+++ ++ ++ G +IR ++R A R TKGV + + ++ +++ Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLA 815 Query: 894 VERIRESEIVDEAE 907 + R E+ + E Sbjct: 816 IARNAEANADEAVE 829 >gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] Length = 815 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 62 DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+ Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IV+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H G Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + + Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRG Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ +IV Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + + Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814 >gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] Length = 841 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 377/896 (42%), Positives = 551/896 (61%), Gaps = 92/896 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE E+ I + I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G Sbjct: 2 ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K GE + +HPHG+AA+YD+L RMAQD+SLR L++G GNFGS DGD AA Sbjct: 62 DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE +L K + +L D+ KDTVDF+PN+D EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA-LMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNLGE +DG AV+DNP+I +D +M+ I+GPDFPT A I+G+ GI++AY TGRG Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305 +++R + IE+ G+R +IVVTEIPY VNKA ++EKIA+LV++K+I I+ ++DES R Sbjct: 242 RLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGRE 301 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLIGILKA 360 + R+VI+LKR A+ +V+LNQLY+ T LQ FSVNMVA+ Y+P L ++ Sbjct: 302 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDY 361 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A +E+V+ RRTK+ L+KA RAH+L GL IA+ NLDEV+RIIR S A+ +L +R Sbjct: 362 YIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSER 421 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S+ Q++AI+++RL RLTGL R+ + +E N L Sbjct: 422 --------------------------FGFSDKQSQAIVDMRLGRLTGLEREKLESEYNEL 455 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IK D+L++ + IIK EL +K++ RRT+I +++ ED I ++ V+ Sbjct: 456 LEKIKYFRDVLANEILVHQIIKDELTVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVI 515 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR+P Y++QRRGGKG G+ R+EDFV +LF+ STH ++FF++ G VY+ Sbjct: 516 TMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYR 575 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P QA+G A++N+L LN E++TT++P E + LY+V ATK+G V++ Sbjct: 576 LKAYEIPESGRQAKGTAIVNLLQLNGDEKVTTVIPIQEYK---EGLYLVMATKNGLVKKT 632 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L ++ I + G A+ L DE++ V+ DI+L+T G +RF + R GR Sbjct: 633 DLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPI-GRV 691 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GV+G+ L +GD +I M + Sbjct: 692 SQGVKGMELDEGDFIIGMEVCTDNTT---------------------------------- 717 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L V+E GFGKRT ++++ R GKG+ +++ + G Sbjct: 718 -------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGK 756 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + + V+++D I+L+S GT+IR+ VNEI I RAT+GV + ++ VVSV R Sbjct: 757 SIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVAR 812 Score = 87.5 bits (215), Expect = 9e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + + + + +E + E ++L +++ ++T++ G+ KR + ++ R GKGI Sbjct: 484 KNKYADERRTKIEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRRGGKGIIG 543 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886 + + + L F + + I+ ++KG + R+ EI + R KG V + Sbjct: 544 LSTREEDFVKNL---FVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLN 600 Query: 887 KDERVVSVERIRE 899 DE+V +V I+E Sbjct: 601 GDEKVTTVIPIQE 613 >gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1] Length = 837 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 345/891 (38%), Positives = 534/891 (59%), Gaps = 83/891 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ + K AR Sbjct: 5 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG++A+YDA+ RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 65 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A + D+ K+TVDFRPNYD + EPVVL R PN+L+NG GIAVGMATNIP HNLG Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ + + ++D+ +D LM+ ++GPDFPTG + G+ +AY TGRG++ +RG I Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 244 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ + IV+ EIPY +NK++++EKIA LV E+RI +ADLRDESDR+G RVVI+LKR Sbjct: 245 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 304 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G D+++N LY+YT L+S + +NM+A+ +P+ L L F+ R E+++RRT+Y Sbjct: 305 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 364 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LMQR Sbjct: 365 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 408 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q++AIL++RL RLT L + + +E L +I+ IL + Sbjct: 409 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 458 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L ++++E ++D T RRT ++ + ED I +D+V+T+S GY+KR L Sbjct: 459 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 518 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ QRRGGKG +G+ D+DFV + + H +L F++ G +++ KV ++ GS A+G Sbjct: 519 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 578 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+L L + E +TT++ E + + +F TK G V+R+ S + + + G IA Sbjct: 579 VHIANLLPLEKDEWVTTVLSVREFA---EDRFFLFVTKRGMVKRSSASLYARARKGGLIA 635 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V ++ ++LTT G +RF +R GR++ GV+G++L+ D+V Sbjct: 636 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDRV 694 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ A++ D + Sbjct: 695 VACAVLPGDDTSTE---------------------------------------------- 708 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I+++S G+GKRT +R+ +R GKG++ V+ + G ++ PV D++ ++L Sbjct: 709 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 762 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +IR+ V+E+R RAT GV++ + VV +R+ E E+V+E+ Sbjct: 763 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEES 813 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 136/421 (32%), Gaps = 25/421 (5%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL K +L + + + E IR + A + + + Sbjct: 431 EHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTY----ATKRRTEVLMDE 486 Query: 425 SDIKDLIDLIDDSS-----YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + DLI D G L Q + +A L D ++ L + Sbjct: 487 LEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTT 546 Query: 480 LGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +L + + + K + + ED Sbjct: 547 TNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDR 606 Query: 539 VVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ G VKR S+Y R+GG V +RD+D + + + V+ + G Sbjct: 607 FFLFVTKRGMVKRSSASLYARARKGG--LIAVGLRDDDELIMVREIHNDDHVVLTTGGGM 664 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + P P R + ++L+ +R+ P D++S ++ + +G Sbjct: 665 AIR---FACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTE---IMSISSNGYG 718 Query: 658 RRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R ++ + + + D ++ + ++L T + +R + + Sbjct: 719 KRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKIIRMSVDEV 777 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR ++GV + L +G V+ V + + TE Sbjct: 778 RSV-GRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSEQKTAPEGGDAGTEGTA 836 Query: 774 S 774 Sbjct: 837 G 837 >gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152] gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152] Length = 836 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 351/917 (38%), Positives = 516/917 (56%), Gaps = 94/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E + V I EMQNSY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MTDITLPP-ESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR + MG YHPHG++AIYD L RMAQ W++R L++GQGNFGS Sbjct: 60 YDNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSR 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEPVVL +R PN+L+NG Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSN 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + + + L A ME I+GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ + R IV+TE+PYQVN + IAE V++ +I I Sbjct: 240 IHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 300 ADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V++RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S N +TAR Sbjct: 360 QMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTART 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL+++L RL+ L R I + Sbjct: 420 GLME--------------------------LLDIDEIQATAILDMQLRRLSALERQKIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL R I++ EL + ++ RRT+IV D+ DED I R Sbjct: 454 DLARIEAEIADYKDILDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ E+I I+ E + Y+V ATK+G Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIAQIIQIKTYE---DAPYLVLATKNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++LSDF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSRLSDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNAEDELLSLNVVRPGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 G LV V+D+D++ ++ G +IR N++R A R TKGV + + + + +++ Sbjct: 757 AR--RGTLVGALIVDDDDELYAITSGGGVIRTAANQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERI-RESEIVDEAEST 909 + R E + VD + T Sbjct: 815 IARNADEPDAVDGGDDT 831 >gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] Length = 869 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 409/898 (45%), Positives = 599/898 (66%), Gaps = 37/898 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V++ E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++ WNK Y K Sbjct: 2 STIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE Sbjct: 62 SARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEV 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+ + FLLDDL +++VDFR NYD S EPVVL A++PN+LVNG G+AVGMATN+PTH Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C ++N ++ D L+++I+GPDFPTG +I+G GIK ++ TG+GSI+IR Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFETGKGSIIIRSK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +H E+T R+ I+V E+PYQVNKA ++E IA LV+EKR+ I+DLRDES+++G RVVIE Sbjct: 242 THFEETET-RKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGAS +V+LNQL++ T LQ+ +S NM+ L+ +P +L IL AF+A R+EV+ RRT Sbjct: 301 LKRGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMRPTLMSLRDILAAFIAHRKEVISRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KAR++A+VLV L +A+ N+DEVVRI++ S + ETA + L + W + +L+ Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELL-- 418 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 ++ S + LS Q++AILE+++ R+T + + E+++ +KEC IL S Sbjct: 419 VETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGS 478 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L +I QEL +K + R++ I +ED I RE +VVT ++ GY+KRV Sbjct: 479 EAVLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQ 538 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +S YR QRRGGKGR ++ ED + +F++STH +LFFSS G VYK K ++LPIG PQ Sbjct: 539 ISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQ 598 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG+AL+NI L E IT+I+P + ++F T G V+RN +SDF + +G Sbjct: 599 SRGRALVNIFDLADDESITSILPLKS----SDAENLIFLTAQGKVKRNSMSDFAYVPANG 654 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 K+A+KL+ D ++SV+T E+ I ++T+ G+C+RF + +RV R+S GV+ I+L K Sbjct: 655 KVAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKD 714 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D IS++I+ +++ YMK +R + Sbjct: 715 DSAISLSILNRRILSPEDKAEYMKTKFFERIQNPENH----------------------- 751 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +EQF+LTV+E G+GK TSSY++RI+NR G GI S+ N G +V+ F V ++ Sbjct: 752 ---EEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNH 806 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 I+LV+++G +IR+ + I + R T+GV +FS +ERV SV + E E D++E+TE Sbjct: 807 IMLVTNRGQVIRIEASNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863 >gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] Length = 820 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 373/891 (41%), Positives = 540/891 (60%), Gaps = 87/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + I + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 6 EKNQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAA 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+R+ L++GQGNFGS+DGD AA RY Sbjct: 66 YKKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ A LL D+ KDTVDF PNYD + EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H L E++D V +I+NP +L +ME I+GPDFPTG +I G+ GI NAY TGRG I + Sbjct: 186 PPHRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKV 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIEK +RE IV+ EIPYQVNKA ++E+IA++VREK++ I+++RDESDR+G RV Sbjct: 246 RAKTHIEKVK-NREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ +D+ILN LY+ T ++ F + ++A+ +P+ FTL+ +L F+ R +V+ Sbjct: 305 VIELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVI 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA+ RAH+L GL A+ N+DEV+ I+ S + TAR LM++ Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEK---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q AIL+++L RLTGL R+ + NE L EI+ I Sbjct: 415 ----------------FELTEIQANAILDMKLQRLTGLEREKLENEYKELMEEIERLSAI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S +L IIK ELL +K++ TPR T IVE +++ ED I E MVVT++H GY+KR Sbjct: 459 LKSEEKLNEIIKTELLEIKEKFTTPRLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPL Y Q+RGGKG++ V ++DF+ D FI +TH +++F + G +Y KV+++P Sbjct: 519 VPLKQYEKQKRGGKGKTAVTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAG 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+L L E+I I+P + + + F TK+G V+R L++F I Sbjct: 579 RTAKGKAVVNLLQLQPDEKIKAIIPTTDFS---EDKSLAFFTKNGIVKRTNLAEFSNIRS 635 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD DE++ + E + + TK G C+RFP+ +R GR++ GV GI Sbjct: 636 KGVRAITLDESDELVEAKIVKPETKWLFIITKKGMCIRFPVHDVREM-GRSARGVTGIRF 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 +GD V+ + Sbjct: 695 KYEGDYVVGAETI----------------------------------------------- 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +EQ +LTVSEKG GKRT + ++R +R GKG+ A ++ V V Sbjct: 708 -----AQEEQELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLTHKTGDVV--GVVTVE 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +N +++++ G +IRV + IR A R T GV+I ++VVS+ + + Sbjct: 761 NNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIAKCPK 811 >gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] Length = 822 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 373/901 (41%), Positives = 551/901 (61%), Gaps = 85/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++GI +T+EM+ S+++YA++VI+ RA+PD+RDGLKPV RRI+ GM ++G +K Y Sbjct: 2 EQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R ++++G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ D+ KDTV+F PNYDG EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGEV+D +AV NPDI + LM + I+GPDFPTGA ILG++ IK AY TG G I++ Sbjct: 182 PHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYILGKSAIKKAYETGNGLIIM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I G ++ I+V EIPY VNKA ++EK+AE V+EKRI I ++RDES+R+G R+ Sbjct: 242 RAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ +VILNQL++ TSLQ+ F VN +AL +P+ L ++ ++ +EEV+ Sbjct: 302 VIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNEPQTLNLKQMITYYLDHQEEVIK 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA DRAH+L GL A+ +D ++ +IR S E ++ LM Sbjct: 362 RRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +SE Q +AI E++L RL GL R+ I NELN L I + DI Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R R+L II+ ELL +KD+ RRT I++G D+EDED I ED++++++ GYVKR Sbjct: 456 LENRERILAIIEAELLQLKDKFADKRRTEIIQGTFDLEDEDLIPVEDIIISLTTNGYVKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ Q RGG+G G+ ++D V L +STH +LFF++ G VY+ K + +P Sbjct: 516 MPVDTYKTQNRGGRGIKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L+L++ E + +++ ED Y+ F T +G V++ + +F I Sbjct: 576 RTAKGLPVVNLLNLDKDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++SV+ T IL+ G+ +RF S +R GR + GVRGI++ Sbjct: 636 QSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKM-GRTASGVRGINV 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G VI M Sbjct: 695 DGG-HVIGMT-------------------------------------------------- 703 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + QFI+ +SE G+GK + D+R S+R GKG++ + + + G LVA+ VN Sbjct: 704 ---TDQEGQFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTA--KTGQLVALRAVNG 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++ +++++ +G +IR+P+++++ A R T+GV + A+ V SVE + ++E +E S Sbjct: 759 DEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSD 818 Query: 910 E 910 E Sbjct: 819 E 819 >gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] Length = 863 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 355/896 (39%), Positives = 538/896 (60%), Gaps = 86/896 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G Sbjct: 3 ENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ Y KCAR+ GEV+GK+HPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD A Sbjct: 63 SNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + EP V+ + PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNL EV+DGC A IDNP+I + LM+ I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIYGLQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE ++IVVTEIPY VNKA ++E IA+LV+E R+ I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIE-AGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL +P L +K FV R Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLNLRECIKYFVEHRH 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V +RRT++ L KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L E+Q++AI+++RLA+LTGL D + E L IK Sbjct: 416 --------------------FELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKS 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +IL + R ++K+EL VK++ RRT I+ + ED + +V+T+SHLG Sbjct: 456 LQEILDNPERCKEVMKEELNEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR PL+ ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + + Sbjct: 516 YIKRTPLTDFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P G ++G+A+ N+LSL G+ + + ++E + YVVF TK G V++ L Sbjct: 576 PEGDKNSKGRAIQNMLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ ++ DE++ V +++++ + G+ RF +R GR S GV Sbjct: 636 YSRPRTNGVIAININESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTM-GRVSTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L D+VI M +V Sbjct: 695 RGMKLDDDCEDEVIGMVVVND--------------------------------------- 715 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LV Sbjct: 716 ------------AENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITE--KTGKLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERI 897 A+ V D++ +++++ G +IR+ V + R+ RAT+GV + + K++ + SV ++ Sbjct: 762 AIKTVTDDNDLMIINKSGIVIRMAVAKCRVMGRATQGVRLINLSKKNDTIASVCKV 817 >gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291] Length = 839 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 344/901 (38%), Positives = 511/901 (56%), Gaps = 92/901 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L + ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR+ Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ KL+DF G +A+ L DE++ C+ E+D+LL + GQ +RF + + Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D ++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVR------------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRT+ ++ + R GKG+ Sbjct: 720 ----------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 V 894 + Sbjct: 816 I 816 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G VK+ L+ + + R GG + +RD D + + S +L Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + + P R + + + N + + ++ Y++ AT Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R + ++ R GK + + ++ +++++ T G +R Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R AGR + GVR ++L +GD ++++A AD S Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVEESDGAAGSDG 839 >gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] Length = 826 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 363/904 (40%), Positives = 545/904 (60%), Gaps = 86/904 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM++I GPDFPTG +I+GR GI AY TG+G Sbjct: 183 TTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +LK ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPHFLTLKQMLKYYLDHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRTK+ L KA RAH+L GL IA+ ++DE+V+IIR S + + A+ L+ R Sbjct: 363 DVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVISIEDEDLIEKQNVLLTLTHK 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ ++ Q RGGKG G+ +++ DF L STH +LFF++ G VY +K + Sbjct: 517 GYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L +GE+I T++ PE ++ Y+ F TK G V+R +S+F Sbjct: 577 IPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPEGA---DDNYLFFITKMGTVKRTHVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 SNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ Sbjct: 693 GINLRDNDYVVG------------------------------------------------ 704 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E+ ++ +SEKG+GKRT + ++ I R GKGI+ T+VS+ N G L V Sbjct: 705 -----SEVIKPNDEVMVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ + I++++ G +IR ++++ R T GV + D +V S+ + + + Sbjct: 758 VVDGSKDIMVITTDGIMIRFKISDVPQTGRNTLGVRLIKVNGDSKVSSLAIVPTEDDQET 817 Query: 906 AEST 909 +++ Sbjct: 818 TDNS 821 >gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] Length = 866 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 387/907 (42%), Positives = 546/907 (60%), Gaps = 78/907 (8%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +LI+GQGNFGSVDGD PAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ALM I GPDFPTGA+I G GI AY TGRG I +R + Sbjct: 187 LTEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGRGIAEAYRTGRGKIYLRARA 246 Query: 255 HI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G RVVIE Sbjct: 247 EVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL++FV+ R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQPKILPLKEILQSFVSHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L +A+A++D ++ +IR +P A+ LM+ +W SD+ +++ Sbjct: 367 MFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLKR 426 Query: 434 IDDSSYTIGS----------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 TIG D + +L+E Q +AIL+LRL +LTG+ D + +E Sbjct: 427 SSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDEY 486 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 L I+I E + IL + RL+ IIK EL ++K++ PRRT I+ L++ +ED I +ED Sbjct: 487 KDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDPRRTNIIVNNLEINNEDLINQED 546 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GYVK PL+ Y AQRRGGKG+S ++ EDF+ L + +TH ++L FSS G Sbjct: 547 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDTILCFSSKGS 606 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 +Y KV++LP S ARG+ +IN+L L + ERIT I+P Sbjct: 607 LYWMKVYQLPEASRGARGRPIINLLPLKENERITAILP---------------------- 644 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVF 716 V + + + T G + + R Sbjct: 645 -----------------------------VREYDAGHHVFMATACGIVKKTALDCFSRPR 675 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 G+ I+L +GD++I +A+ D + + + + + + Sbjct: 676 KD----GIIAINLNEGDELIGVAL---TDGSNEVMLFSTDGKAVRFSESKVRSVGRKAAG 728 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + + KE ILT+++ G+GKRT + ++ R+ KG+ + S+ N Sbjct: 729 MRGIKLNDDDRLVSLIIPQKEGEILTITKNGYGKRTLAEEYPTKGRATKGVLSIKTSERN 788 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V +DQI++++D GTL+R V+EI + R T+GV + TAK+E VV ++R Sbjct: 789 --GNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKNEHVVGLQR 846 Query: 897 IRESEIV 903 + E + Sbjct: 847 VAEQDDD 853 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 67/402 (16%), Positives = 144/402 (35%), Gaps = 34/402 (8%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL++ +D +V L + + ++ II+ N A +E + + I + ++ I+ Sbjct: 482 LLDEYKDLLIKIVELISILKTPERLMEIIKDELN---AIKEQYKDPRRTNIIVNNLE-IN 537 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + D + LS Q + ++ G + + L + ++ Sbjct: 538 NEDLINQEDVVVTLS-HQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHD 596 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542 +L + L P +R G + E + + Sbjct: 597 TILCFSSKGSLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDAGHHVFM 656 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+ L + R+ G + + + D + + + V+ FS+ G + Sbjct: 657 ATACGIVKKTALDCFSRPRKDG--IIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRF 714 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 ++ +A A + + LN +R+ +++ ++ TK+G +R Sbjct: 715 SESKVRSVGRKA---AGMRGIKLNDDDRLVSLI------IPQKEGEILTITKNGYGKRTL 765 Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 ++ R+ K + + + + ++ + I++ T G VR +S I V G Sbjct: 766 AEEYPTKGRATKGVLSIKTSERNGNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINV-QG 824 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 RN+ GVR I AK + V+ + V D D + Sbjct: 825 RNTQGVRLIRTAKNEHVVGLQRVAEQDDDIVNEENVVNDQPE 866 >gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] Length = 859 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 364/896 (40%), Positives = 548/896 (61%), Gaps = 86/896 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 +++ + E + V I EMQ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + Sbjct: 13 KNMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYE 72 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ +K Y KCA G V+G+YHPHG+A++YDAL R+AQD+S+ L++G GNFGSVDG Sbjct: 73 DGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDG 132 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE R+ K + +L D+ KDTV+F NYD S +EP VL +R+PN+LVNG GI Sbjct: 133 DPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGI 192 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGE +D +IDNPD L+ LME I+GPDFPTGA+I+GR GI+ AYA Sbjct: 193 AVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAAYA 252 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V+ I + R +I+VTE+PYQVNKA ++E IA++V++KRI I+++ D Sbjct: 253 TGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDH 312 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G + I+LKR AS ++LNQLY YT +Q+ F V M+A+ +P+ TL +L+ ++ Sbjct: 313 SDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQEYI 372 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 F+EEV+ RRT Y L KAR+RAH+L GL IA+ N+DE++ IIR S + TA+ + +R Sbjct: 373 KFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTER-- 430 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L +VQT AI+++RL +LTGL R I +EL +L + Sbjct: 431 ------------------------FGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALEL 466 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +IK+ DIL+ R+ I+K EL+ ++++ R+T I+ +++ ED I +E+ V+T+ Sbjct: 467 KIKDYEDILAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVDIEDLIPQEECVLTL 526 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 ++ GYVKR + YR QRRGG+G SG+ R+ED T++F++++H V+FF+S G VY+ K Sbjct: 527 TNFGYVKRQKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLK 586 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P GS ++G + N+L + E++T+++ PE + Y+V T++G ++R L Sbjct: 587 CYEIPEGSRTSKGMNIANLLPITAEEKVTSMIRVPEFD---EEKYLVMVTRNGIIKRTLL 643 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S + + G IA++LD DE+ V N++++ TK G +RF +R GR + Sbjct: 644 SAYNSARKGGLIAIELDEGDELAWVRVTDGSNELIVATKKGMAIRFHERDVR-LVGRTAR 702 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+ I+L + D V+ MA + Sbjct: 703 GVKAITLGEDDCVVGMARLREGGK------------------------------------ 726 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +LTVSE G+G+ + D+RI R GKG+ V ++ G + Sbjct: 727 -----------------VLTVSETGYGRLSPISDYRIQYRGGKGLLNYHV---DKYGDVA 766 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 A+ V+ +D +IL+S G +IR+ + IR +R +KGV + +D +VV++ R Sbjct: 767 AIKVVDLDDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVVTLARAP 822 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 57/425 (13%), Positives = 131/425 (30%), Gaps = 34/425 (8%) Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 ++ + L + + + +V+ + A + + ++ Sbjct: 454 RQKIEDELAALELKIKDYEDILAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVD- 512 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 I+ + + + + Q GR + + + Sbjct: 513 -IEDLIPQEECVLTLTNFGYVKRQK----MDTYRTQRRGGRGISGMSRREEDVATEMFVI 567 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------MEDEDCIVRED 537 + E+ RT + + M E Sbjct: 568 NSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIANLLPITAEEKVTSMIRVPEFDEEK 627 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V V+ G +KR LS Y + R+GG + DE + ++ + G Sbjct: 628 YLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDEGDELAWVRV--TDGSNELIVATKKGM 685 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + ARG I + + V+ ++ G Sbjct: 686 AIRFHERDVRLVGRTARGVKAITLGEDD---------CVVGMARLREGGKVLTVSETGYG 736 Query: 658 RRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 R + +SD+ R GK + D + +++ ++D++L + G +R +IR Sbjct: 737 RLSPISDYRIQYRGGKGLLNYHVDKYGD-VAAIKVVDLDDDVILISADGVIIRIQADSIR 795 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 A R S GVR + + + ++V+++A H + D E + +++ I + + Sbjct: 796 ECA-RPSKGVRVMRIGEDNKVVTLARAPHEEEDDGEELEGLENTEGGEEEIPDSAGDEEA 854 Query: 775 LKNDS 779 + Sbjct: 855 QTPEE 859 >gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740] gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes] Length = 828 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 374/907 (41%), Positives = 546/907 (60%), Gaps = 88/907 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S + I V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV Sbjct: 1 MSDLLSNNEDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD Sbjct: 61 GARAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ +A+ +L D+ K+TVDF NYD + +EP VL +R PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H L EVV+ + +ID+P +L+ LM + GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHRLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIYGKQGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R +HIEK ++ IV+ E+PYQ NKA ++E+IAEL +EK I IA++RDESDR Sbjct: 241 GRIRVRAKTHIEKNKT-KDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELK+ A ++++LN L++ T++++ F + ++A++ +P+ FTL+ +L F+ R Sbjct: 300 EGIRVVIELKKDAMSEIVLNHLFKSTAMETTFGIILLAIHNKEPKIFTLLELLNLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + VV+RRT + L KA+ RAH+L GL IA+ ++DE+V +IR S + + A+ LM R Sbjct: 360 KTVVIRRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMAR----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q++AIL++RL RLTGL R+ I NE L EI+ Sbjct: 415 ---------------------FGLSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIE 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL S +L IIKQEL+ ++++ T R+T I E ++ ED I E VVT+SH Sbjct: 454 RLTAILRSEEKLNEIIKQELIEIREKFSTKRKTTIEEDYESIDIEDLIPNEPTVVTMSHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKRVPL Y Q RGGKG+ D+DF+ F+ +TH ++LF + G +Y KV+R Sbjct: 514 GYVKRVPLRSYEKQNRGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYR 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A GKA++N++ + E+I + + + ++F TK+G V+R+ LS+F Sbjct: 574 IPEAGRTAIGKAVVNLIQIGADEKIMATITTQDFN---EDKSLMFFTKNGIVKRSNLSEF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 I G A+ LD DE+++ +I + T G C+RFP+ IR GR + GV Sbjct: 631 KNIRSVGIRAINLDDNDELVTARIIDSNVKEIFVATYKGMCIRFPVEDIREI-GRVARGV 689 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 GI + D V + Sbjct: 690 TGIRFKEDEDYVAGATTIGD---------------------------------------- 709 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +LTVSEKG GKRT + ++R+ +R GKG+ A ++ + G LV Sbjct: 710 ------------EKEELLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTP--KTGQLVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V V+++ ++L++ G +IRV + IR A R T GV+I + + D++VVS+ R + E Sbjct: 756 VVNVDESMDLMLLTSTGKMIRVDMQTIRKAGRNTSGVIIVNVS-DDKVVSIARCPKEENP 814 Query: 904 DEAESTE 910 +E S E Sbjct: 815 EEEASDE 821 >gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] Length = 869 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 405/898 (45%), Positives = 596/898 (66%), Gaps = 37/898 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I V++ E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++ WNK Y K Sbjct: 2 STIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE Sbjct: 62 SARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEV 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+ + FLLDDL +++VDFR NYD S EPVVL A++PN+LVNG G+AVGMATN+PTH Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C ++N ++ D L+++I+GPDFPTG +I+G GIK ++ +GRGSI+IR Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +H E+T + I+V E+PYQVNKA ++E IA LV+EKR+ I+DLRDES+++G RVVIE Sbjct: 242 THFEETEAG-KAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGAS +V+LNQL++ T LQ+ +S NMV L+ +P +L IL AF+A R+EV+ RRT Sbjct: 301 LKRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KAR++A+VLV L +A+ N+DEVV I++ S + E A + L + W + +L+ Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL-- 418 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 ++ S + LS Q++AILE+++ R+T + + E+++ +KEC IL S Sbjct: 419 VETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGS 478 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L +I +EL +K + R++ I +ED I RE +VVT ++ GY+KRV Sbjct: 479 EAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVH 538 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +S YR QRRGGKGR ++ ED + +F++STH +LFFSS G VYK K ++LPIG PQ Sbjct: 539 ISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQ 598 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG+AL+NI L E IT+I+P + ++F T G V+RN +SDF + +G Sbjct: 599 SRGRALVNIFDLADDESITSILPLKS----SDAENLIFLTAQGKVKRNSMSDFAYVPANG 654 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 K+A++L+ D ++SV+T E+ + ++T+ G+C+RF + +RV R+S GV+ I+L K Sbjct: 655 KVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKD 714 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D IS++I+ +++ YMK +R + Sbjct: 715 DNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENH----------------------- 751 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +EQF+LTV+E G+GK TSSY++RI+NR G GI S+ N G +V+ F V ++ Sbjct: 752 ---EEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNH 806 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 I+LV+++G +IR+ N I + R T+GV +FS +ERV SV + E E D++E+TE Sbjct: 807 IMLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863 >gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] Length = 814 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 360/896 (40%), Positives = 554/896 (61%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +G++ NK Sbjct: 3 ENQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+GKDTVDF PN+D EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + +P+I +D L+EII GPDFPTGA+ILG++GIK AY TGRG I R Sbjct: 183 PHNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ IE +RE+I++TEIPYQVNKA ++EKIA+LV+EKR+ I+D+RDESDR+G R+V Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+KR ++ +++LN LY+YT L++ F + +AL +P+ L +++ +V ++EVV R Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KARDR H++ GL IA+ ++DE+++IIR S + + ++ + Sbjct: 363 RTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+EVQ++AIL+++L RL+GL + + E + L I L IL Sbjct: 412 ---------------FKLTEVQSQAILDMQLKRLSGLEIEKLNAENDELARMIDYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S L+ +I E+ +K++ RRT+IV ++E + RED+++T++ GY+KR+ Sbjct: 457 NSEETLINLIIDEMTEIKEKYADDRRTQIVPDEGEIEISELFEREDILITLTKDGYIKRL 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+S+G V+ + + +P S Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RG+A+INIL+L GERIT +M + N +V TK+G +++ +F I ++ Sbjct: 577 TSRGQAIINILNLESGERITEMMTLSDL---HKNSQIVLQTKNGTIKKTDAENFANIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D+++SV +E ++L++TK G ++F +R GR + GV+ I L K Sbjct: 634 GIIAISLQENDKLISVRQIDKEEELLISTKNGMTIQFNSKDLRSM-GRIAQGVKAIKLDK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM I Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K +E ++L V+E +GK+TS +F+ NR GKG++ V++ + G +V PV+ ++ Sbjct: 702 --KGEETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKVVDTLPVDLDN 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906 I++VS G +IR+ V +I I R T GV + + +R+VSV + E +E Sbjct: 758 DIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTKYSTLEEEEED 813 >gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] Length = 874 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 356/932 (38%), Positives = 522/932 (56%), Gaps = 108/932 (11%) Query: 1 MTEHIISSDEEEEK----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + + +E + V + EMQ SYL YA++VI+ RA+PD+RDGLK Sbjct: 1 MADENTPNTPDELTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L Sbjct: 61 PVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++ GNFGS DP AA RYTEC++ A +L D+ ++TVDF+ NYDG QEP VL AR Sbjct: 121 VDSNGNFGSPGNDPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPAR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFP 226 PN+LVNG GIAVGMATNIP HNL EV +G + NP + L+ + I+GPDFP Sbjct: 181 IPNLLVNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 TGA+++GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+PYQVN + +KIA+ Sbjct: 241 TGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIAD 299 Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV++ ++ IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL Sbjct: 300 LVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 359 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR Sbjct: 360 DGVPRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIR 419 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 S +TAR LM G + + E+Q AILE++L RL Sbjct: 420 RSDTVDTARGGLM--------------------------GLLEIDEIQANAILEMQLRRL 453 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I E + L +I E IL+S R II +EL ++ ++ RR+++V Sbjct: 454 AALERQKIVQEHDELQSKIDEYNAILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDG 513 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 DM ED I ED+VVT++ GYVKR YR+Q+RGGKG G ++ +D V+ F+ +T Sbjct: 514 DMSIEDLIAEEDIVVTITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTT 573 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF++ G VY+ K + LP +ARG+ + N+L+ E+I I+ + E+ Sbjct: 574 HHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEKIARILAIRDYEAV--- 630 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTT 700 Y+V ATK G V++ L D+ G IA+ L DE++ E + +D+LL + Sbjct: 631 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLIS 690 Query: 701 KLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + Q +RF + +R GR + GV+G+S + D+++SM +V Sbjct: 691 RKAQSIRFTATDESLRPM-GRATSGVKGMSFREDDELLSMNVVRPGT------------- 736 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 F+ T ++ G+ KRT+ ++R Sbjct: 737 ----------------------------------------FVFTATDGGYAKRTNVDEYR 756 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 + R G GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R T Sbjct: 757 VQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTM 814 Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 GV + + K + VV + R E+ E + Sbjct: 815 GVQLINLGKRDAVVGIARNAEAGREAEEVEED 846 Score = 78.7 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 14/252 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + + +L + +L S Sbjct: 631 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLIS 690 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + + P R + + +S + + + ++ +V AT Sbjct: 691 RKAQSIRFTATDESL-RPMGRATSGVKGMSFREDDELLSMNVVR------PGTFVFTATD 743 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 744 GGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 803 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR+++GV+ I+L K D V+ +A A + +E SA + + Sbjct: 804 NEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEEDSATGSAPAEEAASEAV 862 Query: 771 EITSLKNDSSVE 782 E T D + E Sbjct: 863 EGTLPPADETEE 874 >gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] Length = 837 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 357/899 (39%), Positives = 529/899 (58%), Gaps = 92/899 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + I I +E++ S++ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M ++G+ + Sbjct: 4 PNARERILPRLIDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGR 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G+V+GKYHPHG++++YDAL RM Q +SLR L++GQGNFGS+DGD AA R Sbjct: 64 AYKKSATVVGDVLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF PN+D +EP VL A +PN+LVNG GIAVGMATN Sbjct: 124 YTEARLTRMAVEMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +A+IDNP++D AL ++++GPDFPTG I GR GI + TGRG I+ Sbjct: 184 IPPHNLREVISAVIALIDNPELDGPALRKLVKGPDFPTGGYIYGRAGIADYQDTGRGRII 243 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE+ S + QIVVTE+PYQVNKA ++ IAELVR++++ I+ LRDESD+ G Sbjct: 244 MRARAVIEEKESSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGV 303 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFV 362 RVVIELKR A V+LNQLY++T++QS F V M+AL P+ TL L+ ++ Sbjct: 304 RVVIELKRDAIPRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYI 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 A R EV+VRRT++ L+KA +R H+L GL IAV N+DEV+ +IR + + TA +L R Sbjct: 364 AHRHEVIVRRTQFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSR-- 421 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE Q AIL +RLA+LTGL RD + EL + Sbjct: 422 ------------------------FGLSERQAEAILNMRLAKLTGLERDKLEEELVEVRA 457 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E IL SR R + I+K EL+ V + RRT IV + ED I E+MVVT+ Sbjct: 458 FILEMRGILESRDRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEEEMVVTI 517 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KR PLS+Y Q RGG+G++ +++ DF+ ++ STHT +L F+ G + K Sbjct: 518 THGGYIKRTPLSLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLK 577 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V LP RGK ++N++++ RI I+ E + +++F T++G V++ L Sbjct: 578 VHELPQAGRNTRGKPIVNLINVTPDTRIRAIVVTKEFS---DTEFLLFCTRNGTVKKTAL 634 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S + +G A+K++ DE++ V+ + ND++L T+ G VRF S +R GR++ Sbjct: 635 SQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVREM-GRDTT 693 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+GI L DQ++ M ++ Sbjct: 694 GVKGIELRPSDQLVGMVVIKR--------------------------------------- 714 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E +L V+E+G GK + ++R+ R GKGI + + + G ++ Sbjct: 715 --------------EATLLVVTERGLGKCSEVSEYRVQKRGGKGILTLNRTV--KTGDVI 758 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 A+ V D+++L++ +G IR V+EIR+ RA +GV + + + V +V R+ + Sbjct: 759 ALMEVVPEDELMLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVSAVARVIPDD 817 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 17/237 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ LS Y R G + + +D + D+ + S + V+ Sbjct: 614 FSDTEFLLFCTRNGTVKKTALSQYSNPRANG--IKAIKIEQDDELMDVQVTSGNNDVVLA 671 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + G I + +Q ++ T Sbjct: 672 TRHGLSVRFHESDVREMGRDTTGVKGIELRPSDQ---------LVGMVVIKREATLLVVT 722 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRF 708 + G + +++S++ R GK + L + D ++++ E++++L T+ G +R Sbjct: 723 ERGLGKCSEVSEYRVQKRGGKGILTLNRTVKTGD-VIALMEVVPEDELMLMTRQGIAIRS 781 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +S IRV GR + GV+ ++L D V ++A V+ D + + + + Sbjct: 782 KVSEIRV-TGRAAQGVKLVALDDLDGVSAVARVIPDDKEGEGEGEESGATTMEGDAE 837 >gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] Length = 864 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 362/927 (39%), Positives = 522/927 (56%), Gaps = 103/927 (11%) Query: 1 MTEHIISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 M + EE + + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MADQNTPVTPEESGETVQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ +DTVDF NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G ++NP+ + L++ I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 I IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EV+VRRTK+ L KA +RAH+L GL A+ +DEV+ +IR S + Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM + + E+Q AILE++L RL L R Sbjct: 420 IARTGLM--------------------------DLLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I+E +IL+S R GI+ EL ++ ++ R+T +V DM ED Sbjct: 454 KIIQEHDELQAKIREYNEILASPVRQRGIVSAELAAIVEKFGDDRKTMLVPYDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVTVS GYVKR YRAQ+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I+ + E Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYE---ATPYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + +DILL +K Q + Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRT+ ++R+ R G Sbjct: 731 ----------------------------------FVFTATDGGYAKRTNVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR R T GV + + Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESE-IVDEAESTE 910 K + VV + R E+ +E + E Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGDE 841 >gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13] gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13] Length = 763 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 365/843 (43%), Positives = 525/843 (62%), Gaps = 86/843 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 4 NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+V Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ R Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AILE+RL RLTGL RD I NE N L I IL Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++ Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL + Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + M I + + Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757 Query: 852 QII 854 +++ Sbjct: 758 ELM 760 Score = 97.6 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 9/216 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 +E+ ++ T G R S + R G++ ++ + D V ++ + Sbjct: 497 LIQEEDVVITLTHTGYIKRIS-SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLL 555 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + Y + I + ++ ++ ++ Sbjct: 556 FFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSFKDVQEDGYLFMGTK 615 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G K+T DF N G+ A ++ + L+ + II V+ G IR Sbjct: 616 LGIVKKTPLKDF--KNIRKNGLIALNLREG---DELLRAKITYGDADIIFVTQDGNAIRF 670 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++R R GV S + + V ++ E E Sbjct: 671 NETDVRPMGRTASGVKAISLREGDVAVCMDIAVEDE 706 Score = 90.2 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 99/230 (43%), Gaps = 21/230 (9%) Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730 + + LD+ DE++++ ++ ++I K RF +S + + + + L Sbjct: 381 LIIALDNIDEVINIIRSSKTSEI---AKNTLIERFSLSE------KQAAAILEMRLRRLT 431 Query: 731 --KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D++ + ++ + + + + + + + S + + +E +E Sbjct: 432 GLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERRTQIEKQENE 491 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++L +E ++T++ G+ KR SS + R GKGI+A + + + + Sbjct: 492 IDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENV---LVT 548 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSV 894 + + ++ + KG + ++ E+ A R KG + + DE++ +V Sbjct: 549 STHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 12/266 (4%) Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700 V+ T G ++R + R G AM D + +V + +++L T Sbjct: 499 QEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFT 558 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKH 757 G+ + + AGR + G ++ L +++ ++ D D + Sbjct: 559 TKGKVYKIKAYEV-PDAGRTAKGTNLVNILPLEADEKI--QTVLSFKDVQEDGYLFMGTK 615 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 + ++ D + I + E ++ + I+ V++ G R + D Sbjct: 616 LGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDV 675 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R R+ G++A + + + V + +++++++VS+ G R ++E ++ +R Sbjct: 676 RPMGRTASGVKAISLREGDVA---VCMDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGG 732 Query: 878 KGVVIFST-AKDERVVSVERIRESEI 902 G++ + K +VV +E + Sbjct: 733 IGLITYKVSDKTGKVVGATVCKEDDE 758 >gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680] gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680] Length = 864 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 361/922 (39%), Positives = 524/922 (56%), Gaps = 102/922 (11%) Query: 1 MTEHIISSDEEEEKGI----TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ S EEE I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G ++NP+ + L++ I+GPDFP+GA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EV+VRRTK+ L KA +RAH+L GL A+ +DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM G + + E+Q AILE++L RL L R Sbjct: 420 IAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E IL+S R GII +EL ++ ++ RR+++V DM ED Sbjct: 454 KIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVT++ GY+KR YR+Q+RGGKG G ++ +D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I+ + E+ Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + E+D+LL +K Q + Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRT+ ++R+ R G Sbjct: 731 ----------------------------------FVFTATDGGYAKRTAVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R T GV + + Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESEIVDEA 906 K + VV + R E+ E Sbjct: 815 LGKRDAVVGIARNAEAGREAEE 836 >gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] Length = 873 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 363/930 (39%), Positives = 525/930 (56%), Gaps = 106/930 (11%) Query: 1 MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 M + + +E+ + I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MADETSTPAAAEEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G K + KCAR+ G+VMG YHPHG+ +IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + +L D+ +DTVDF+ NYDG QEP VL AR PN+LV Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLV 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G +++P+ + L++ I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ R Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGR 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 I IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EVVVRRT++ L KA +RAH+L GL A+ ++DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM + + EVQ AILE++L RL L R Sbjct: 420 IARAGLM--------------------------DLLSIDEVQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E L +I E IL+S + I+ +EL + ++ RR+++V DM ED Sbjct: 454 KILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYGDDRRSQLVPFDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVT+S GYVKR YR+Q+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ ERI I+ + E Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYE---AAPYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLG 703 TK G V++ L D+ G IA+ L DE++ E + +D+LL +K Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKA 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 QSIRFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRP------------------ 731 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 F+ T ++ G+ KRT+ ++R+ Sbjct: 732 -----------------------------------GTFVFTATDGGYAKRTAVDEYRVQG 756 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+A + + + G+LV V ++D+I+ ++ G +IR VNE+R R T GV Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEESDEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814 Query: 882 IFSTAKDERVVSVERIRESE-IVDEAESTE 910 + + K + VV + R E+ DE + T+ Sbjct: 815 LINLGKRDAVVGIARNAEAGHEADEVDGTD 844 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 93/261 (35%), Gaps = 17/261 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTH 586 +V + G VK+ PL Y + R GG + D D + +VS Sbjct: 621 YEAAPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAA 680 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 +L S + + P R + + +S +G+ + ++ Sbjct: 681 DDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMNVVR------PGT 733 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLG 703 +V AT G +R + ++ R G A K+ ++ + ++IL T G Sbjct: 734 FVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDEILAITLGG 793 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +R ++ +R GR+++GV+ I+L K D V+ +A A + DE + Sbjct: 794 GVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGHEADEVDGTDEAAVVDGT 852 Query: 764 LISGDTEEITSLKNDSSVEGN 784 E + + Sbjct: 853 DTGTAVSEGEGTEPSAGEREE 873 >gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215] gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9215] Length = 865 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 341/913 (37%), Positives = 534/913 (58%), Gaps = 69/913 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S + E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I NP I+ L EII+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ + TG+GSI +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK+ Sbjct: 241 IRETFKTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR + V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + + Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L LS +Q+ AIL+++L RLT L D Sbjct: 421 AREKL--------------------------QNEHKLSSIQSDAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I+ E N L +I IL+S+ R+ II +EL + + +PR+T I++ ++D D Sbjct: 455 IKEEHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + VV ++ GY+KR+P++ + + RG +G++G +++D V + H ++L F Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+++ ++ Y++ T Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFV---DDRYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ +K G + F I Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDI 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L +GD ++SM ++ D +I + Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT-------------- 736 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ +E ++L S G GKR FR+ R+G G+RA Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + + ++++LV++KG ++R ++I SRA GV + + Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841 Query: 891 VVSVERIRESEIV 903 + V + +I Sbjct: 842 LSEVVLVPREQIE 854 Score = 61.0 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 25/250 (10%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D V + ++ ++ G++KR LS + R G + + D D +T + + SVL Sbjct: 619 DSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNG--LIAINLEDGDALTWVRLSKEGDSVL 676 Query: 591 FFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-------- 640 S G ++ + L ARG +N+ + + + D+ Sbjct: 677 IGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT 736 Query: 641 ---------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEILSVE 688 +S + +V+ A+ G +R ++ F R+G A+K D+++ ++ Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLK 796 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 + ++LL T+ G VR I R + GV+ L GD + + +V + Sbjct: 797 VLGEGEELLLVTEKGVIVRTNADKI-SQQSRAATGVKLQRLDDGDHLSEVVLVPREQIEG 855 Query: 749 DERICYMKHM 758 ++ ++ Sbjct: 856 KDQHGSVEQN 865 >gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3] gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3] Length = 834 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 363/911 (39%), Positives = 514/911 (56%), Gaps = 94/911 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG+ AIYD L R+AQ WSLR L++G GNFGS Sbjct: 58 YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE R+ A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG G Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +D+PD L+E +I+GPDFPT +I+GR G Sbjct: 178 GIAVGMATNIPPHNLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIVGRNG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSI +R V ++E+ R Q+VVTE+PYQVN + EKIAELVR+ R+ I Sbjct: 238 IEEAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI+LKR A A V+LN LY++T LQ F VNM+A+ P L Sbjct: 297 ADVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR Sbjct: 357 QMVRYYVEHQIDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARG 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM+R LSE+Q AIL+++L RL L R I + Sbjct: 417 QLMER--------------------------FSLSEIQATAILDMQLRRLAALERQRIID 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I + IL+S +R II +EL V ++ RRTR+V DM ED I + Sbjct: 451 EAAELRAKISDLEAILASPTRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVTV+ GY KR +YR+QRRGGKG G +R++D V F+ +TH +LFF++ Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K LP + A+G+ + NIL+ Q ERI ++ + E Y+V ATK G Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVIAVKDYE---AAPYLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++ L DF G +A+ L DE+++ +D+LL ++ Q +RF + Sbjct: 628 LCKKTALHDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ D+++SM +V+ Sbjct: 688 RPM-GRATSGVIGMRFDAEDELLSMDVVVPGTTAD------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +L + G+ KRT ++ + R GKG+ + Sbjct: 722 --------------------------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI- 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ G LV V+ +DQ+ ++ G ++R ++R A R T GV + +VV Sbjct: 755 -VSTRGGLVGALVVDPDDQLYAIASNGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVG 813 Query: 894 VERIRESEIVD 904 V R ++E D Sbjct: 814 VARNADAEDTD 824 >gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] Length = 809 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 364/889 (40%), Positives = 530/889 (59%), Gaps = 94/889 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K Sbjct: 5 NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DP AA RYTE R Sbjct: 65 ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ + Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HI + +R+ I VTEIPYQVNKA ++ KIAELV+++++V I+DLRDESDRQG RVVIEL Sbjct: 245 HIGEVD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR++ Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A+DRAH+L GL A+ +D ++ IIR S N +TAR+ LM Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAE-------------- 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S +Q +AIL+L+L RL L R I +E L I D+LS Sbjct: 410 ------------FDFSAIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++ ++K++ ++ PR T I +++ +ED + D++VT+S G++KRVP Sbjct: 458 EKIYALVKEDAKDLRGSYGQPRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPA 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612 +V+R Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P S Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N++ + Q ERIT I+ + +++ AT G +++ L +F + SG Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IAM L + DE+++ T+E DILL T+LGQ +RFP+S +R + R S GV+ I L+KG Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSKG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++TV+E G GK T+ ++ +R+G G+ V +++ G +VA V++ DQ Sbjct: 707 ------LVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758 Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895 ++L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 16/280 (5%) Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L++ + + + ED S + R S + ++ D Sbjct: 437 LDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSYGQPRATEISNQGVIEFREED- 495 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + I+ ++ G R P + R R G+ G+ + D V +++ Sbjct: 496 -----LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDT 549 Query: 744 ADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D ++ ++ + + I+ + + F Sbjct: 550 HDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHF 609 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L + KG K+TS +F G+ A D++ LVA + I+L + Sbjct: 610 LLMATNKGEIKKTSLQEFTAVR--SSGLIAMDLAT---SDELVAAVETTEEKDILLATRL 664 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 G IR PV+E+R + RA+ GV +K + VVS++ +E Sbjct: 665 GQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704 >gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1] Length = 836 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 356/916 (38%), Positives = 514/916 (56%), Gaps = 97/916 (10%) Query: 1 MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 MT+ I + D E + V I EMQ SY+ YA++VI+GRA+P + DGLKPVHRR Sbjct: 1 MTDTIDPAAPAAGDGEGGGRVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M + G ++ +VKCAR+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI GQG Sbjct: 61 VLYSMGENGFRPDRSFVKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTECRL A +L D+ ++TVDF NYDG QEPVVL +R PN+L Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231 +NG GIAVGMATNIP HNL EV G ++NPD D LME I+GPDFPT +I Sbjct: 181 INGSSGIAVGMATNIPPHNLREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLI 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI++AY TGRGSI +R V +E + R +VVTE+PY VN ++E IA +VR+ Sbjct: 241 VGRDGIESAYRTGRGSIRMRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDG 300 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 +I I+++ DE SDR G R+V+ LKR A A V+LN LY++T LQ F NM+++ P Sbjct: 301 KIAGISEIVDESSDRIGMRIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDGVPR 360 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 L I++ +V + EV+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S Sbjct: 361 TLRLDQIVRHYVRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATV 420 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 + AR L+ + + E+Q +AIL+++L RL L R Sbjct: 421 DVARAGLI--------------------------DLLTVDEIQAQAILDMQLRRLAALER 454 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I +EL + EI + DIL+ R I++ EL + ++ RRTRIV D+ DE Sbjct: 455 QKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHGDDRRTRIVGYDGDVTDE 514 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +L Sbjct: 515 DLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVNHFFVCSTHDWML 574 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP + ARG+ L N+L+L E I +M + ++ Y+V Sbjct: 575 FFTNRGRVYRLKAYELPEANRTARGQHLANLLALQPDEEIAQVMQIKDYQAR---PYLVL 631 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT++G V++++L+DF G I + L DE++ C+ ++D+LL + GQ +RF Sbjct: 632 ATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQSIRFTA 691 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GV G+ GD+++++ ++ Sbjct: 692 TDDALRPM-GRATSGVLGMRFNSGDKLLALGVIRP------------------------- 725 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + ++L + G+ KRT D+ + R GKG+ Sbjct: 726 ----------------------------DTYLLVATTGGYAKRTPIEDYPVQGRGGKGVL 757 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G LV V +D++ ++ G +IR E+R A R TKGV + + + Sbjct: 758 TLQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGES 815 Query: 889 ERVVSVERIRESEIVD 904 +++V R E D Sbjct: 816 STLLAVARNAEETEED 831 >gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74] gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74] Length = 874 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 356/937 (37%), Positives = 522/937 (55%), Gaps = 115/937 (12%) Query: 1 MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45 M + + +EE + V + EMQ SYL YA++VI+ RA+PD+ Sbjct: 1 MADENTPTPDEEPTGPIPGADDGAAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60 Query: 46 RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105 RDGLKPVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS Sbjct: 61 RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWS 120 Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165 +R+ L++ GNFGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180 Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221 VL +R+PN+L+NG GIAVGMATNIP HNL EV G +++P+ + L++ I+ Sbjct: 181 VLPSRFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASNEELLDALIERIK 240 Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281 GPDFPTGA+++GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299 Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340 +KIA+LV++ +I IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359 Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400 M+AL P +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419 Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460 + +IR S E AR LM G + + E+Q AILE+ Sbjct: 420 IALIRRSETVEDARGGLM--------------------------GLLEIDEIQANAILEM 453 Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 +L RL L R + E + L I E IL+S R I+ EL + D+ RR+++ Sbjct: 454 QLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFGDDRRSQL 513 Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 V DM ED I ED+VVT+S GYVKR YR+Q+RGGKG G ++++D V Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640 F+ +TH +LFF++ G VY+ K + LP ARG+ + N+L+ E I I+ + + Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRDYD 633 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695 Y+V AT+ G V++ L D+ G IA+ L DE++ E + ++D Sbjct: 634 ---AAPYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELIGAELVSADDD 690 Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 +LL +K Q +RF + +R GR + GV+G+S GD+++SM +V Sbjct: 691 LLLISKKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRP---------- 739 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 F+ T ++ G+ KR+ Sbjct: 740 -------------------------------------------GTFVFTATDGGYAKRSP 756 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 ++R+ R G GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R T GV + + K + VV+V R E+ EAE E Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGR--EAEEVE 849 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 14/247 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ L Y + R GG + D +L +L S Sbjct: 636 PYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELIGAELVSADDDLLLIS 695 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S G+ + ++ +V AT Sbjct: 696 KKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVR------PGTFVFTATD 748 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R+ + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 749 GGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRV 808 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + IR GR+++GV+ I+L K D V+++A A + +E Q G E Sbjct: 809 NEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVEAAGPDDEPQADPAEGTAE 867 Query: 771 EITSLKN 777 Sbjct: 868 GTEPSAE 874 >gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] Length = 870 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 355/893 (39%), Positives = 529/893 (59%), Gaps = 86/893 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E S E + + +M+ S++ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 31 ETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNE 90 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ N+ + K AR G+V+GKYHPHG+ A+YD + RMAQ +S+ + L++G GNFGS+DG Sbjct: 91 SGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDG 150 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE RL + A LL DL K+TVD++PNYD S +EP VL AR+PN+LVNG GI Sbjct: 151 DSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGI 210 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNL EV+D VIDNPD+ LD L++++ GPDFPTGA I+GR GI+ AY Sbjct: 211 AVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIREAYE 270 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGS+ +R I +T R I V EIPY VN+ +LEKI EL+R+K++ +I+++ D Sbjct: 271 TGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDG 330 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 +DR G ++IELK+ A V+LN+LY++T +Q+ F NM+AL P +L IL ++ Sbjct: 331 ADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQILSYYI 390 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 A + +V+ RRT+Y L KA +RAH++ GL IA+ N+DEV+ IIR S + AR L++ Sbjct: 391 AHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIE--- 447 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L E+Q AILE+RL RLTGL D + EL L Sbjct: 448 -----------------------NFNLDEIQANAILEMRLRRLTGLEYDKLVEELRDLEE 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVT 541 I +L + + IIK+E+ +K + + RRT+I D++ ED I EDMVVT Sbjct: 485 RIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDIDVEDLIADEDMVVT 544 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 V+ GYVKR+PL+ YR Q+RGGKG GV ++++DFV LF+ STH +LFFSS G VY+ Sbjct: 545 VTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGKVYRL 604 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP ARG A++N+LSL +GE I ++ + Y++FAT G V++ Sbjct: 605 KVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDFP---KEEYLMFATSAGMVKKTS 661 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 +S + + R G IA+ L+ DE++SV+ + + + + G+ + + S R GR++ Sbjct: 662 MSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEARAM-GRDT 720 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ + + V+ M+I Sbjct: 721 KGVRGMKVPADEHVLEMSIAKPQAD----------------------------------- 745 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + ++EKG+GKRTS Y++ + +R G+G+ +++ + G L Sbjct: 746 ------------------LFVITEKGYGKRTSVYEYPLHHRGGQGVYTITMTR--KKGEL 785 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 A V D++++I+++++G ++R PV + R+T+GV I + ++V +V Sbjct: 786 AAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRAV 838 Score = 88.3 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 92/241 (38%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730 + LD+ DE++ + ++ + + F + I+ R G+ Sbjct: 420 IALDNIDEVIHIIRSSKTD---KEARDRLIENFNLDEIQANAILEMRLRRLTGL------ 470 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+++ + + + ++ +S + + + Sbjct: 471 EYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDI 530 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L E ++TV++ G+ KR +R R GKG++ ++ + + + L F + Sbjct: 531 DVEDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHL---FVAS 587 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 + ++ S KG + R+ V E+ A R +G V + S K E + +V I + E Sbjct: 588 THAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAV--IATKDFPKE 645 Query: 906 A 906 Sbjct: 646 E 646 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 15/240 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +E+ ++ + G VK+ +S+Y RR G + + D D + + VS V Sbjct: 642 FPKEEYLMFATSAGMVKKTSMSLYDRTRRDG--LIAINLNDGDELISVKRVSDGEKVFMV 699 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G W R + + + E E + + T Sbjct: 700 SSAGKAIV---WDESEARAMGRDTKGVRGMKVPADEH------VLEMSIAKPQADLFVIT 750 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R + ++ +R G+ + + E+ + + T + ++++ T G VR P Sbjct: 751 EKGYGKRTSVYEYPLHHRGGQGVYTITMTRKKGELAAAKIVTDDEELIIITNEGVVVRTP 810 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GR++ GVR +++ D+V ++ I +R+ Sbjct: 811 VKGV-SKLGRSTQGVRIMNVVDKDKVRAVGIADDGKGRKHKRVGGKTDDLDIDVDGDEGD 869 >gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] Length = 846 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 388/900 (43%), Positives = 557/900 (61%), Gaps = 68/900 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + K IT V I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G WNK Sbjct: 2 NDRAKEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQ + +R +LI+GQGNFGSVDGD AA R Sbjct: 62 NYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++ LL DL K+TVD+ NYDG+ + P VL AR PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV+GC+A IDN +I +D LM+ I GPDFP+ AVI + +K AY TG+G I Sbjct: 182 IPPHNLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSELKKAYETGKGKIY 241 Query: 250 IRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + RE I+V EIPYQVNK+ +LEKIAELV+ KRI I LRDESD+ G Sbjct: 242 IRARAEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++K A ++++LN LY T LQ F +NMVAL+ +P+ +L IL AF+ R V Sbjct: 302 RVVIDIKHDAISEIVLNNLYSLTQLQVSFGINMVALHHGQPKVMSLKDILSAFICHRRSV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR + L KA +R HVL GL IA++N+D V+ +IR S + A L +SW A+D+ Sbjct: 362 ITRRILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVT 421 Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++ I + Y ++ Q RAIL+LRL +LT L D + E +SL Sbjct: 422 NMRKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 ++++ + L ++S L+ +I+QEL+S+K+E RRT I + ++ E+ I + D+VV Sbjct: 482 LKKMEKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S+ GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y Sbjct: 542 TLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+RLP +RG+ +IN+L L+ ERITTI+P + V AT G V++ Sbjct: 602 MKVYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYT---KGHQVFMATSSGFVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + G IA+ L+ DE++ + N+++L T G+ VRF + +R GR+ Sbjct: 659 ALMEFSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSM-GRS 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 +VGV+GI L +GD+V+S+ I + + Sbjct: 718 AVGVKGIHLLQGDRVVSLIIPKNKSS---------------------------------- 743 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILT+++ GFGKRT ++ + +RS KG+ + V++ N G Sbjct: 744 -------------------ILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERN--GN 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V+ +DQI++++D G L+R+ V+E+ I R TKGV++ TA DE VV ++R+ ES Sbjct: 783 VVGAVQVSHDDQIMIITDAGRLVRIRVSEVNIIKRNTKGVMLIRTACDEHVVGLQRVVES 842 Score = 67.5 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 70/467 (14%), Positives = 152/467 (32%), Gaps = 47/467 (10%) Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 + +D R I + S + N + + L+ Sbjct: 412 SQSWRANDVTNMRKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLR--------- 462 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 L + ++ LL K L + + + + + I+ + RR Sbjct: 463 -LHKLTTLEHDKLLVEYDSLLKKMEKLIFTLKNKSSLMDVIRQELVSIKEEYS--DIRRT 519 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRA----------ILELRLAR 464 + + + D+++LI+ D Y L++ + + I E Sbjct: 520 EINNTIPSIDVENLINQRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFIT 579 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 + L S I + + + ++++ R T I+ Sbjct: 580 QLLIANTHDTVLLFSNYGRI-YWMKVYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQ 638 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 + V + G+VK+ L + R G + + DE D+ Sbjct: 639 KYTKGH-------QVFMATSSGFVKKTALMEFSRPRNVGIIALNLNVGDELIGADV--TD 689 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 + V+ F++ G V + K ++ A G I++L ++ N Sbjct: 690 GNNEVMLFTAYGKVVRFKETQVRSMGRSAVGVKGIHLLQGDR---------VVSLIIPKN 740 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701 ++ TK+G +R S++ +RS K + + + + + ++ I++ T Sbjct: 741 KSSILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERNGNVVGAVQVSHDDQIMIITD 800 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 G+ VR +S + + RN+ GV I A + V+ + V+ + Sbjct: 801 AGRLVRIRVSEVNIIK-RNTKGVMLIRTACDEHVVGLQRVVESVDSN 846 >gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii] Length = 857 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 378/899 (42%), Positives = 546/899 (60%), Gaps = 87/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE + ++ IV+ E+PYQVNKA ++E+IA+L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-SKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N + A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q +AIL++RL RLTGL RD + E L I I + IL Sbjct: 414 ---------------FGLSAIQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL IIK+EL +K++ PRRT I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEDRLNEIIKEELNEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P + + + F TK+G V+R LS+F I + Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTSDFD---EAKSLTFFTKNGIVKRTSLSEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + T +++ T LGQC+RF + R GR++ GVR I Sbjct: 636 GVRAIVLDDDDEIVTAKIATVDTKYLMVFTSLGQCIRFEVDKARE-QGRSTRGVRAIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ I+ D Sbjct: 695 IDSDIVVDAEIIDSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ A +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++L++ G +IRV + IR A R T GV+I + KD++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIELDE 819 >gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] Length = 830 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 356/882 (40%), Positives = 518/882 (58%), Gaps = 59/882 (6%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRLQ + LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG VA+I NP+I Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR----EQIVV 268 LM+ + GPDFPTGA ILG + IK AY TGRGSI +RGV+ IE E I++ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR G R+VIELKR + V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQ+ F NM+AL +P+ TL L F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+A+LD ++ +IR +P+ TA+ EL+ + Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELI--------------------------NSYG 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSEVQ AIL+++L RLT L D IR E L ++I + DIL R R+L II+ E + Sbjct: 395 LSEVQADAILQMQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K + TPRRT I +++D D I E +++ ++ GY+KR+P+S + +Q R +G++G Sbjct: 455 KTQFTTPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAG 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 ++++D + H SVLFFS G VY K +++P GS +RG ++ +L + + E Sbjct: 515 AKVKEDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+I+ E + Y+V TK GN+++ L F I +G IA+ L+ D++ V Sbjct: 575 KITSIVSVSEFS---SEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E+ +++ ++ G + F +R GR + GV+ + L GD++I M I+ A Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPL-GRATRGVKSMKLKTGDELIGMDILPAAIL 690 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + + + + + ++L ++ Sbjct: 691 NTLNTEMEEELTEVEETSDNIEETSNIL----------------------GPWVLIITIG 728 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKR FR+ NR+G+G+ AT L + VN +++I++ +++G +IR Sbjct: 729 GYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQS 788 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +N I I SR GV + +D+ + V + E Sbjct: 789 INAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 830 >gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv] Length = 838 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ +D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLVSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395] gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395] Length = 832 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 345/917 (37%), Positives = 507/917 (55%), Gaps = 93/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + I V + EMQNSY+ YA++VI+GRA+P++RDGLKPVHRR+L+ Sbjct: 1 MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR E MG YHPHG+++IYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 61 FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A +L D+ ++TVDF PNYDG QEP VL +R PN+L+NG G Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D ++NP + L A ME+++GPDFPT A+I+G G Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V IE+ Q++VTE+PYQVN ++ IAE V + ++ I Sbjct: 241 IRDAYMTGRGSIRMRSVVDIEEVK-GTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+VI L+R A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 SKIEDQSSDRAGLRIVITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V++RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S N E AR Sbjct: 360 QMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL ++L RL+ L R I + Sbjct: 420 GLM--------------------------DLLDIDEIQADAILAMQLRRLSALERQKIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL V D+ RRTRI+ D+ DED I R Sbjct: 454 ELAEIEREIADLKDILERPERQRAIVRDELKEVVDKYGDDRRTRIIPAEGDVTDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIRISGYE---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL F G A+ L DE++ C+ ++D+LL +K GQ +RF + Sbjct: 631 LVKKSKLDAFDSNRSGGIAAINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRQTSGVQGMRFNDDDELLSLTVVRP------------------------------ 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + F+L + G+ KRT ++ R GKG+ Sbjct: 720 -----------------------DTFLLVATSGGYAKRTDIEEYSAQGRGGKGVLTIQHD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+ + +I ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 P--KRGDLVGALVVDIDSEIYAITSGGGVIRTKAKQVRKAGRQTKGVRLMNLSDGDNLIA 814 Query: 894 VERIRESEIVDEAESTE 910 + R + DE + + Sbjct: 815 IARNADEPDEDEGAADD 831 >gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] Length = 817 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 370/896 (41%), Positives = 543/896 (60%), Gaps = 86/896 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G +N+ Y K AR+ Sbjct: 3 QITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARV 62 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 63 VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSK 122 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + L DL K TVDFR NYD S QEP VL + PN+L+NG GIAVGMATNIP HNLGE Sbjct: 123 LSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 182 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 +++G V ++DNP+ +++ LM+ I+GPDFPTGA+ G G++ AY TGRGSI IRGV +IE Sbjct: 183 LINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGKGLREAYLTGRGSIKIRGVVNIE 242 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + R+ IV+TEIPY +NK++M+EKIA+LV E +I ++DLRDESDR+G RVV++LK+G Sbjct: 243 EKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKKG 302 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A AD+I+N LY++T L+ F +NM+A+N +P+ L IL AF+ R EV++RRT++ L Sbjct: 303 AIADIIINSLYKFTQLEQSFGINMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRFDL 362 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +K RAH+L GL IA+ N+DEVV+IIR S N + AR LM R Sbjct: 363 DKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDR----------------- 405 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LS+VQ +AIL++RL RLT L + + E + +I+ IL++ L Sbjct: 406 ---------FELSKVQAQAILDMRLQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVL 456 Query: 498 LGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G+I+ EL+ +KD T R+T + D++ ED I +D V+T+S GY+KR PLS Y Sbjct: 457 KGVIRDELVEIKDNYATERKTVLMDHNPDDIDIEDLIPDDDAVITLSRRGYIKRTPLSNY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + Q+RGGKG +GV +D DF+ S H +L F+S G ++K KV ++P S ARG Sbjct: 517 QKQKRGGKGIAGVQTKDGDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGA 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L + E I T M E E L+V TK G ++R+ ++ + +SG A+ Sbjct: 577 HIANLLPLEKDETIATAMTMREFEEECFFLFV---TKSGMIKRSSIALYRNCRQSGIRAV 633 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +++V+ + +++ +L T+ G +RF R GR + GV+GI+L GD+V+ Sbjct: 634 ALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDARAM-GRVASGVKGIALRPGDEVV 692 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S + + Sbjct: 693 SGVVTGDEERVQ------------------------------------------------ 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +LT+SE G+GKRT RI R GKGI + V+ + G ++ V+ D+++L+ Sbjct: 705 ---LLTISEGGYGKRTDIDQHRIQTRGGKGIISMRVTT--KTGKVLGSIMVSPEDEVVLL 759 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAESTE 910 + +IR+ V ++ + RAT+GV + + VV + +++ EI E E E Sbjct: 760 TSGNKIIRMGVKDVSLVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSEPEGEE 815 >gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] Length = 824 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 363/908 (39%), Positives = 539/908 (59%), Gaps = 88/908 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM+ I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ ++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPIVNLLQLEKGEKVQAVVNIPEGA---DDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ Sbjct: 691 RGINLRPEDYVVGSGVL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GANDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++ ++ I++++ G +IR ++ SR+T GV + D RV S+ + D Sbjct: 756 IVLDSDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTIVPTEAEQD 815 Query: 905 E--AESTE 910 E E +E Sbjct: 816 EIGDEDSE 823 >gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132] gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132] Length = 815 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 361/888 (40%), Positives = 536/888 (60%), Gaps = 86/888 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M +G +N+ Y K AR+ Sbjct: 5 ITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMARL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 L D+ K+TVDF PNYD + QEP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 125 CSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG V ++DNP+ +++LM+ I+GPDFPTG I G G+ +AY TGRGSI IRGV +E+ Sbjct: 185 IDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGGQGLIDAYTTGRGSIKIRGVVELEE 244 Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 E I++ EIPY +NK+ ++EKIA LV EK+I +ADLRDESDR+G R+V+ELKRG Sbjct: 245 ARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKRG 304 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A AD+I+N LY++T L++ F +NM+A+ G +P L +L F+ R EV++RRTK+ L Sbjct: 305 AIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLGHFLEHRREVIIRRTKFDL 364 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +K R H+L GL IA+ N+DEVV++IR S PE AR LM R Sbjct: 365 DKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSR----------------- 407 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LS++Q +AIL++RL +LTGL D + EL L +I+ ILS+ L Sbjct: 408 ---------FSLSDIQAKAILDMRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVL 458 Query: 498 LGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G+I+ EL +K TPR++ ++ L ++ ED I E+ V+T+S GY+KR PLS Y Sbjct: 459 KGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNY 518 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 AQ+RGGKG +GV D DF+ + + H ++ F++ G ++K KV ++P GS A+G Sbjct: 519 TAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGG 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L++ E I T + E ++ + +F TK G ++R+ + + +G A+ Sbjct: 579 HVNNLLPLDKDEHIATCLSLREFA---DDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAV 635 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V E D +L ++ G +RF I+ R GR + GV+G++L D+V+ Sbjct: 636 NLRDHDELMDVREIEPEVDCILVSREGSAIRFNINDARPM-GRATAGVKGMALRPNDEVV 694 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + + + D Sbjct: 695 ACVVTGDQERDQ------------------------------------------------ 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +LTVSE G+GKRT+ +R+ R GKGI ++ N+ G +V VN++D +IL+ Sbjct: 707 ---LLTVSEGGYGKRTTIDQYRVQTRGGKGILNMRLT--NKTGMVVGACMVNESDDVILL 761 Query: 857 SDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903 + + +IR+ V+E+ RAT+GV + D +V+ + + + + Sbjct: 762 TSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDDED 809 Score = 78.3 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 64/380 (16%), Positives = 129/380 (33%), Gaps = 25/380 (6%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + A E++R S + E + + + + I Sbjct: 458 LKGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPD--EETVITLSRRGYIKRTPL 515 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 S+YT G ++ VQT + LT + + +IK SR Sbjct: 516 SNYTAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYA 575 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G + L KDE + + + V+ G +KR + +Y Sbjct: 576 KGGHVNNLLPLDKDEHIATCLSL-----------REFADDRFFLFVTKKGMIKRSSIGLY 624 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R G V +RD D + D+ + + S G + + + P R Sbjct: 625 GNCRTTG--IRAVNLRDHDELMDVREIEPEVDCILVSREGSAIR---FNINDARPMGRAT 679 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A + ++L + + + + ++ ++ G +R + + R GK + Sbjct: 680 AGVKGMALRPNDEVVACVVTGD----QERDQLLTVSEGGYGKRTTIDQYRVQTRGGKGIL 735 Query: 677 KLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + ++ + + +D++L T + +R +S + GR + GVR + + + Sbjct: 736 NMRLTNKTGMVVGACMVNESDDVILLTSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDN 795 Query: 734 QVISMAIVLHADADYDERIC 753 +VI +V+ D D E Sbjct: 796 KVIGFDLVMDDDEDLGEVQA 815 >gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279] gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279] Length = 806 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 370/890 (41%), Positives = 531/890 (59%), Gaps = 87/890 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+G Q GV ++K+VK Sbjct: 2 SQVLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CA+I GEVMGK+HPHG+AAIYD L R+AQ W+LR LI+GQGNFGSVDGDPPAA+RYTE Sbjct: 62 CAKIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL LL DL K+TV F PNYDG+ ++P VL A PN+LVNG GIAVGMAT++P H Sbjct: 122 RLSNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD V +IDNP++ L+ +M+++ GPDFPTGA + R GIK AYATGRGS+ +R Sbjct: 182 NLGEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAKLS-RRGIKEAYATGRGSLKVRAR 240 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E R +V TEIPYQVNKA ++ +IA LVR K I +IA LRDESDRQG R+ +E Sbjct: 241 VRNED-KNGRAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVE 299 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA+ V+LN+LY+++ LQ+ F+VN++A+ +P+ TL+ +++ ++ R VV +RT Sbjct: 300 LKRGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGEPKVLTLLELMRHYLDHRGLVVRKRT 359 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KAR+RAHVL GL IA+ ++DEV+ +IR S + AR LM Sbjct: 360 EYELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLM--------------- 404 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 G L+EVQ +AIL++RL RL GL RD ++ E L EI IL Sbjct: 405 -----------GRFSLTEVQAQAILDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGD 453 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 RL +++ ELL++KD+ RRT+I E ED I E MV+T++ G+VKR PL Sbjct: 454 EKRLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTPL 513 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG G ++ED +F+ S H ++L F++ G VY EKV LP S QA Sbjct: 514 EAYRAQGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQA 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG ++++L L +GE + ++ + Y VFATK+G +++ ++ ++ ++ +G Sbjct: 574 RGTHIVSLLPLQEGEEVAALLNVRDLT---QEGYFVFATKNGLIKKTEIKEYQNLSSAGL 630 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ L D ++ V + + ++L T+ GQ +RF +S +R GR S GV GI +G Sbjct: 631 IAINLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRA-TGRASQGVTGIRFKEGR 689 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+S+ I+ + Sbjct: 690 DDRVVSLVILPKGE---------------------------------------------- 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E +L V G+GKRT ++ + R G G+ + ++ ++G L A+ V N+ Sbjct: 704 -----ESEVLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNE--KVGQLAALMRVQGNE 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++++S +G IR V+ I RAT GV + + + + + S I + Sbjct: 757 DLLVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDEIASAFVIAPQD 806 Score = 131 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 22/260 (8%) Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVE-----------TCTQENDILLTTKLGQCVRFP 709 ++ R +A+K D+ + E ++ T G R P Sbjct: 453 DEKRLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTP 512 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLIS 766 + A R GR +G + + D+ IS+ + D + Y + + Sbjct: 513 LEAYRA-QGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASR 571 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 ++ +E + + ++ G K+T ++ N S G Sbjct: 572 QARGTHIVSLLPLQEGEEVAALLNVRDLTQEGYFVFATKNGLIKKTEIKEY--QNLSSAG 629 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A ++ + ALV V + DQ++L + G IR ++++R RA++GV Sbjct: 630 LIAINLLE---NDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRATGRASQGVTGIRFK 686 Query: 887 K--DERVVSVERIRESEIVD 904 + D+RVVS+ + + E + Sbjct: 687 EGRDDRVVSLVILPKGEESE 706 >gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] Length = 809 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 367/890 (41%), Positives = 554/890 (62%), Gaps = 89/890 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D E + I V I EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M +G+ Sbjct: 2 ADIENKMNIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +R+ GEVMGKYHPHG++AIYDA R+AQD++LR L++GQGNFG++DGD AA Sbjct: 62 DKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+QK A +L D+ KDTVDF PNYD + +EPVVL +++PN+LVNG GIAVGMA Sbjct: 122 PRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+D IDN DI +D LM+ ++GPDFPTGA I+G GIK AY TGRG Sbjct: 182 TNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V++IE+ ++ +I+VTEIPYQVNK ++ KI EL+++KRI I+DLRDES+ +G Sbjct: 242 ITVRAVANIEEH-NNKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKR A+ ++ILN LY++T +Q+ F V +AL +P+ L ++ +V + + Sbjct: 301 IRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRD 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RR ++ L KA DRAH++ GL A+ ++DE+++IIR S + A+ +LM+R Sbjct: 361 VITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYS--DAQEKLMER------- 411 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 +++Q +ILE+RL RL GL R+ +++E NSL EI Sbjct: 412 -------------------FGFTKIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARL 452 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL + +L IIK+EL+ +K++ RRT I ++E E+ I ED+V+T++ GY Sbjct: 453 KEILGNERLILNIIKEELIEIKEKFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGY 512 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P Y+ Q RGGKG + +++D+V LF+ STH+ +LFF++ G VYK K + +P Sbjct: 513 IKRIPSDTYKVQNRGGKGVVALTTKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIP 572 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G QA+G+ +IN+L L GE++ ++P + + ++ Y++ ATK G ++R + F Sbjct: 573 EGKRQAKGQNIINLLELMHGEKVNAVIPVKD---AGSDEYLIMATKKGTIKRTSVELFKA 629 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I + G A+ L DE++ V T E+ +L TK G ++F +S IR GR GVRGI Sbjct: 630 IRKVGMKAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREI-GRTGQGVRGI 688 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K D+V+SM + Sbjct: 689 KLDKDDEVVSMNLASEG------------------------------------------- 705 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L +SE G+GKRT + ++++ NR GKG++ V+ ++ G +V+ V Sbjct: 706 ----------KHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTGFVVSSKMV 753 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896 N +D+II+++ G +IR+ V +I + R T+GV+I KD +++V+V + Sbjct: 754 NPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAK 803 Score = 41.7 bits (96), Expect = 0.59, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 13/240 (5%) Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL--LSVKDELDTPRRTRI 520 + G ++ ++ + + S L+ K+ + + R+ + Sbjct: 576 RQAKGQNIINLLELMHGEKVNAVIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGM 635 Query: 521 VEGLLDMEDEDCIVR----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576 L +DE VR ED + V+ G + LS R R G+G G+ + +D Sbjct: 636 KAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREIGRTGQGVRGIKLDKDDE 695 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 V + + S +L S G+ + + + +G T Sbjct: 696 VVSMNLASEGKHLLVISEYGYGKRTLASNYKVQNRGGKGVKT-------YKVTDKTGFVV 748 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696 + ++ +V A G +R ++ + + +K ++DE V ND+ Sbjct: 749 SSKMVNPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAKYVNDV 808 >gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] Length = 814 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 381/891 (42%), Positives = 522/891 (58%), Gaps = 88/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SV I ++M+ +YL YA++VI+ RA+PD RDGLKPVHRRIL+ M MG+ N Y K A Sbjct: 6 IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ARMAQD+S+R LI+GQGNFGS+DGD PAA RYTE RL Sbjct: 66 RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF N+DG+ +EPVVL AR PN+L+NG GIAVGMAT+IP HNL Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +I+N D + LM II GPDFPTG +I+GR GI + Y+TGR + +R Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 GV+ IE+ G R I++TEIPYQVNKA ++E+IAELVRE ++ +I+DLRDESDR G +V Sbjct: 246 GVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RGA +LNQLY+YT LQS FSVNM+AL +P L L+ F+ R+EV+ R Sbjct: 306 IELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEVLTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KAR RAH+L GL IA+ANLD V+ IIR SP+ ETAR+ L++R Sbjct: 366 RTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIER----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+EVQ +AIL+++L RL L R I +E + I D+L Sbjct: 415 ---------------FKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++ ++L +I+ ++ + ++ RRTRI E D +ED + E +++T++ GY+KR Sbjct: 460 ANPRKILALIQTDMKELAEKYGDNRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V S YR Q RGGKG G +++ED +T + T ++LFF+ G VY +K ++P Sbjct: 520 VNASAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAG 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +G IN+L+L ERIT + + Y + AT +G V+R LS+F + Sbjct: 580 RTDKGIPAINVLALEANERITVAVAVRSFA---DARYCLMATVNGKVKRVDLSEFESVRP 636 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L++ D++ V +LL T+ G VRF S +R GR + GV GISL Sbjct: 637 SGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESEVRSM-GRQASGVTGISLR 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V SM IV Sbjct: 696 EGDRVASMDIVEEGGG-------------------------------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V+ KGFGKR +F + R+ G+ A D I + G L V +N Sbjct: 712 ---------LLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQEN 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D++ L S G +RV V+ I R +GV I + + V S+ RI + E Sbjct: 763 DEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEE 813 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 70/426 (16%), Positives = 147/426 (34%), Gaps = 40/426 (9%) Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400 + +K IL + + ++ + + +R L L +AN ++ Sbjct: 409 QRLIERFKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDL---LANPRKI 465 Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460 + +I+ + +R+ A + + + + L+ + Sbjct: 466 LALIQTDMKELAEKYGDNRRTRIA---AEAKEDFSEEDLVADEAVLITLTARGYIKRVNA 522 Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTR 519 R G + + EI L + + L + ++ + K ++ RT Sbjct: 523 SAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTD 582 Query: 520 IVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKG 565 + E + V V + G VKRV LS + + R G Sbjct: 583 KGIP--AINVLALEANERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLI 640 Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625 + D+ L VL + G+ + + QA + + +SL Sbjct: 641 AISLENGDQLGWVRL--TDGSRHVLLVTEQGYTVRFAESEVRSMGRQA---SGVTGISLR 695 Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD--- 682 +G+R+ ++ ++ T G +R +L +F+ R+ M LD + Sbjct: 696 EGDRVASMDIVE------EGGGLLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAK 749 Query: 683 --EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 ++ + +++ L + G +R +S+I F GR + GV + L +GD V S+A Sbjct: 750 TGKLAVARVVQENDEVALFSASGVALRVKVSSI-PFKGRVAQGVSIMHLDEGDSVASIAR 808 Query: 741 VLHADA 746 + +A Sbjct: 809 IPQEEA 814 >gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] Length = 831 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 362/903 (40%), Positives = 519/903 (57%), Gaps = 96/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + E I V I EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTETLPP----EHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVKC+R+ G+VMG YHPHG+++IYD L R+AQ WS+R LI+GQGNFGS Sbjct: 57 YDSGYRPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSP 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L D+ +DTVDF NYDG QEP VL AR PN+LVNGGG Sbjct: 117 GNDPAAAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV DG V ++NP+ D L+AL+E I+GPDFPT +I+G Sbjct: 177 GIAVGMATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGTNA 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +R V +E+ + R +VVTE+PYQVN ++E IA + RE ++ I Sbjct: 237 IADAYRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGI 296 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DES+ R+G R+VI LKR + V+LN LY++T LQ F VNM+AL P L Sbjct: 297 SDIADESNSRRGMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALVEGVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + EV+VRRT++ L KA +RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 357 QVIRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDART 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + EVQ AILE++L RL L R I + Sbjct: 417 GLIE--------------------------LLEVDEVQANAILEMQLRRLAALERQKIVD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI++ DIL R II+ EL+++ D+ RRTRIV ++ ED I Sbjct: 451 QLAEIEREIEDLKDILDKPERQRQIIRDELMAIVDKHGDDRRTRIVPHEGEVSMEDLIAD 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 511 EDVVVTLTRTGYAKRTRTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ E I +M + Y+V AT++G Sbjct: 571 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEHIAQVMQIKDYT---AAPYLVLATRNG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+DF G I + L DE++ C+ ++D+LL + GQ +RF S + Sbjct: 628 LVKKSRLTDFDSNRSGGLIGVNLKDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEAL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ +GD++++M +V Sbjct: 688 RPM-GRATSGVLGMRFNEGDELLAMGVVRP------------------------------ 716 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++++L ++ G+ KRT D+ + R GKG+ Sbjct: 717 -----------------------DRYVLVATDGGYAKRTPIDDYPVQGRGGKGVLTIQYD 753 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + + G LV V+ +D++ ++ G +IR E+R A R TKGV + + VV+ Sbjct: 754 R--KRGRLVGALIVDVDDELYAITSTGGVIRTTAKEVRKAGRQTKGVRLMNLGDGTSVVA 811 Query: 894 VER 896 V R Sbjct: 812 VAR 814 >gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97] gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium bovis AF2122/97] Length = 838 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+ F G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTAFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99] gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99] Length = 839 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 344/918 (37%), Positives = 514/918 (55%), Gaps = 93/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++N D L A+ + ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V +RRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R+ I + Sbjct: 421 GLIE--------------------------LLGIDEIQAQAILDMQLRRLAALERERIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ E D+LL + GQ +RF + + Sbjct: 632 VVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 692 RPM-GRATSGVQGMRFNADDRLLSLNVVREGT---------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT ++ + R GKG+ Sbjct: 723 -------------------------YLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + + + +++ Sbjct: 758 RR--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 815 Query: 894 VERIRESEIVDE-AESTE 910 + R E + AE+T+ Sbjct: 816 IARNAEENADEAVAEATD 833 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 13/233 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ + + R GG + +R ED + + S+ +L Sbjct: 616 KSYEDAPYLVLATQNGVVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSEEDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S+ G + + P R + + + N +R+ ++ Y++ Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVR------EGTYLLA 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R GK + + ++ ++++ T G +R Sbjct: 727 ATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R AGR + GVR ++L +GD ++++A +AD S+ Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTDESS 838 >gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 867 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 338/915 (36%), Positives = 528/915 (57%), Gaps = 67/915 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S + E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDIVDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE++DG A+I NP + L E+I+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 IK + +G+GSI +RGV+ IE+ +++ +++TE+P+Q NKAA++E+IA+LV EKR Sbjct: 241 IKETFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKR 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LDGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +D ++ +IR + + + Sbjct: 361 SLRKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L LS +Q AIL+++L RLT L D Sbjct: 421 AREQL--------------------------QNDHELSVIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I++E + L +I + +IL+ + R+ II +EL + + +PR+T I+ ++D D Sbjct: 455 IKSEHDELTKKITDYKNILNDKERINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + + RG +G++G + +D V + H ++L F Sbjct: 515 IANERSVVLLTTAGYLKRMPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+++ ++ Y++ T Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSLVSVDSFDNEC---YLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F ++ +G IA+ L+ D + V T+ + +L+ + G + F Sbjct: 632 KAGFIKRTPLSAFSKVRSNGLIAINLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDT 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L +GD+++SM ++ D + + + Sbjct: 692 NELRPL-GRTARGVKSMNLKEGDKLVSMDVLSCDLVDQLANLEEEDIENENEEDLESK-- 748 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +IL S G GKR FR+ R+G G+RA Sbjct: 749 -----------------------SSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAI 785 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + +LV + + + ++++LV+++G ++R ++I SRA GV + + Sbjct: 786 KF--RIKDDSLVGLKVLGEGEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDH 843 Query: 891 VVSVERIRESEIVDE 905 + V + +I ++ Sbjct: 844 LSEVVLVPHEQIEED 858 >gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] Length = 853 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 367/929 (39%), Positives = 548/929 (58%), Gaps = 105/929 (11%) Query: 1 MTEHIISSDEEEEKGITSVS-----------------------ITDEMQNSYLTYAINVI 37 M++ I +E++E I + I DE++ SYL Y+++VI Sbjct: 1 MSDDIRDDEEKQEDIIEETNDDDSDIVVEEIKETNMTNEVNIYIEDEIKASYLDYSMSVI 60 Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 + RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GEV+GKYHPHG++++Y+A+ Sbjct: 61 VSRALPDVRDGLKPVHRRILFAMNEMGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAM 120 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 R+AQD+++R LL++G GNFGSVDGD AA RYTE R+ K LL D+ K+T+DFR N+ Sbjct: 121 VRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMRYTEARMAKITAELLADIDKNTIDFRKNF 180 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 D S EP VL A+ PN+L+NG GIAVGMATNIP HNL E+ DG VA+IDN +I +D L+ Sbjct: 181 DESLDEPTVLPAKLPNLLLNGSTGIAVGMATNIPPHNLSEICDGIVALIDNREISVDELI 240 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277 I+GPDFPTG +I G+ GI AY TGRG I + G IE + +E I+VTE+PYQVNK Sbjct: 241 NYIKGPDFPTGGIINGKQGIYEAYRTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNK 300 Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337 A ++EKIAELVR K++ I+DLRDESDR+G R+VIELK+G +++ILN LY++T LQ+ F Sbjct: 301 ARLIEKIAELVRHKKLTGISDLRDESDREGIRIVIELKKGEESELILNSLYKFTDLQNTF 360 Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397 + M+AL P L IL+ ++ R V+ RR ++ LNKA +RAH+L G IA+ N+ Sbjct: 361 GIIMLALVNNAPRVLNLKQILENYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNI 420 Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457 DEV+RIIR S + AR +L+ + SE+Q +AI Sbjct: 421 DEVIRIIRGSKDANEAREKLIA--------------------------SFGFSEIQAKAI 454 Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 L++RL RLTGL RD I E L + I+E IL+ S+ IIK E++ +K++ RR Sbjct: 455 LDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEVIKLKEDFGDKRR 514 Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 T I E +++ ED I ED+VVT++ GYVKR + Y +QRRGG G + ++D + Sbjct: 515 TEIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYHSQRRGGIGVNATNTVEDDVI 574 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 D++I ++L F++ G V+ KV+ +P QARGK + N++ L++ ER++T++ Sbjct: 575 KDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVR 634 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--END 695 E E + + F TK G V++ L+ F IN++G A+ L DE+ + +++ Sbjct: 635 EFE---KDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRDEDELKFAGLTSGSEKDE 691 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 I + T+ G +RF +RV GR + GV+GI+L D V++ I+ + Sbjct: 692 IFIATRNGISIRFCEEDVRVM-GRTAAGVKGITLRDKDYVVAAVIINPEKISEELS---- 746 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 ++T++E+G+GKRT+ Sbjct: 747 --------------------------------------------VMTITEEGYGKRTALS 762 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 ++++ +R GKGI +++ + G +V V V+D +I+L++ +GTLIR V+ + + R Sbjct: 763 EYKVQSRGGKGIINLKINE--KTGKIVDVKIVDDKTEIMLITSEGTLIRTKVDTVSVIGR 820 Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVD 904 AT GV I +E+V S +I E+ + Sbjct: 821 ATSGVRIMKVRNEEKVASAVKIAENPEEE 849 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 7/220 (3%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ ++ T+ G R I R +GV + + D + M I + D Sbjct: 529 LIKDEDVVVTLTEKGYVKRTSIDTYHS-QRRGGIGVNATNTVEDDVIKDMYIAKNLDTLL 587 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + + + ++ S S + +S K++ I +++ Sbjct: 588 IFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVREFEKDKAIFFITK 647 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G K+T F N+ GIRA + +E+ + ++ D+I + + G IR Sbjct: 648 DGVVKKTDLTLFANINK--TGIRALTLRDEDEL-KFAGLTSGSEKDEIFIATRNGISIRF 704 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++R+ R GV + + VV+ I +I +E Sbjct: 705 CEEDVRVMGRTAAGVKGITLRDKDYVVAAVIINPEKISEE 744 >gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551] gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11] gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987] gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A] gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85] gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503] gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172] gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C] gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem] gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A] gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85] gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A] gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85] gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987] gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85] gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503] gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210] gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A] gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002] gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003] gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004] gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005] gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006] gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008] gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007] gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009] gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551] gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C] gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem] gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11] gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172] gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A] gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85] gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987] gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503] gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85] gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A] gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002] gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003] gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004] gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005] gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006] gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007] gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008] gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009] gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A] gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148] Length = 838 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] Length = 874 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 354/937 (37%), Positives = 519/937 (55%), Gaps = 113/937 (12%) Query: 1 MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45 M + + +EE + V + EMQ SYL YA++VI+ RA+PD+ Sbjct: 1 MADENTPTPDEEPTGPIPGADDGVAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60 Query: 46 RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105 RDGLKPVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+ Sbjct: 61 RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120 Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165 +R+ L++ GNFGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180 Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221 VL AR+PN+L+NG GIAVGMATNIP HNL EV G + +P+ + L++ I+ Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240 Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281 GPDFPTGA+++GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299 Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340 +KIA+LV++ +I IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359 Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400 M+AL P +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419 Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460 + +IR S E AR LM G + + E+Q AILE+ Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453 Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 +L RL L R + E + L I E IL+S R I+ EL + D+ RR+++ Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513 Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 V DM ED I ED+VVT+S GYVKR YR+Q+RGGKG G ++++D V Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640 F+ +TH +LFF++ G VY+ K + LP ARG+ + N+L+ E I I+ + E Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695 Y+V ATK G V++ L D+ G IA+ L DE++ E + ++D Sbjct: 634 ---AAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDD 690 Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 +LL ++ Q +RF + +R GR + GV+G+S GD+++SM +V Sbjct: 691 LLLISRKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRTGT-------- 741 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 F+ T ++ G+ KR+ Sbjct: 742 ---------------------------------------------FVFTATDGGYAKRSP 756 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 ++R+ R G GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R T GV + + K + VV+V R E+ E + Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 14/251 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589 +V + G VK+ L Y + R GG + D+ +L + Sbjct: 632 YEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDL 691 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L S + P R + + +S G+ + ++ +V Sbjct: 692 LLISRKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVRT------GTFVF 744 Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706 AT G +R+ + ++ R G A K+ ++ + ++IL T G + Sbjct: 745 TATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVI 804 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R ++ IR GR+++GV+ I+L K D V+++A A + +E Q Sbjct: 805 RTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADGPDDEPQADPAE 863 Query: 767 GDTEEITSLKN 777 G E Sbjct: 864 GTVEGTEPSAE 874 >gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG] gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF] Length = 874 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 354/937 (37%), Positives = 519/937 (55%), Gaps = 113/937 (12%) Query: 1 MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45 M + + +EE + V + EMQ SYL YA++VI+ RA+PD+ Sbjct: 1 MADENTPTPDEEPTGPIPGADDGVSGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60 Query: 46 RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105 RDGLKPVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+ Sbjct: 61 RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120 Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165 +R+ L++ GNFGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180 Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221 VL AR+PN+L+NG GIAVGMATNIP HNL EV G + +P+ + L++ I+ Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240 Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281 GPDFPTGA+++GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299 Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340 +KIA+LV++ +I IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359 Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400 M+AL P +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419 Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460 + +IR S E AR LM G + + E+Q AILE+ Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453 Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 +L RL L R + E + L I E IL+S R I+ EL + D+ RR+++ Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513 Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 V DM ED I ED+VVT+S GYVKR YR+Q+RGGKG G ++++D V Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640 F+ +TH +LFF++ G VY+ K + LP ARG+ + N+L+ E I I+ + E Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695 Y+V ATK G V++ L D+ G IA+ L DE++ E + ++D Sbjct: 634 ---AAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDD 690 Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 +LL ++ Q +RF + +R GR + GV+G+S GD+++SM +V Sbjct: 691 LLLISRKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRTGT-------- 741 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 F+ T ++ G+ KR+ Sbjct: 742 ---------------------------------------------FVFTATDGGYAKRSP 756 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 ++R+ R G GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R T GV + + K + VV+V R E+ E + Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 14/251 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589 +V + G VK+ L Y + R GG + D+ +L + Sbjct: 632 YEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDL 691 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L S + P R + + +S G+ + ++ +V Sbjct: 692 LLISRKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVRT------GTFVF 744 Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706 AT G +R+ + ++ R G A K+ ++ + ++IL T G + Sbjct: 745 TATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVI 804 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R ++ IR GR+++GV+ I+L K D V+++A A + +E Q Sbjct: 805 RTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADGPDDEPQADPAE 863 Query: 767 GDTEEITSLKN 777 G E Sbjct: 864 GTVEGTEPSAE 874 >gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 813 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 362/884 (40%), Positives = 528/884 (59%), Gaps = 84/884 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G +N+ Y K AR+ Sbjct: 3 NISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARV 62 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL RMAQD+++R L++GQGNFGS+DGD PAA RYTE R+ + Sbjct: 63 VGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSR 122 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L D+ K+TV+FR NYD + EP VL AR PN+LVNG GIAVGMATNIP HNLGE Sbjct: 123 LAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGE 182 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D + ++DNP+ ++ LM+ I+ PD PTGA I G+ AY TGRGS IR +E Sbjct: 183 VIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLKGVLEAYRTGRGSFKIRSRLDVE 242 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 S E IV+ E+PY +NKA ++EKIA LV +K+I I+DLRDESDR G R+VI+LK+G Sbjct: 243 TRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKKG 302 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A +DVI+N+LY+ T+L++ F +NM+A+ +P+ L +L+ F+ R+EV++RR+++ L Sbjct: 303 AISDVIINKLYKLTALETSFGINMMAVVNNRPQLLNLKQVLEYFLEHRKEVILRRSRHDL 362 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL IA+ N+DEVVR+IR S AR +L+ Sbjct: 363 EKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLIS------------------ 404 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LS+VQ +AIL++RL RLT + R+ + E L +I+ IL + L Sbjct: 405 --------NFSLSQVQAQAILDMRLQRLTNMEREKLMQEYRELLQQIEFLKSILENIDIL 456 Query: 498 LGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G IK+EL +K TPRRT+I + +E D I D+VVT+S GY+KR L Y Sbjct: 457 KGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLEYY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 Q+RGGKG +G + D+DF+T LF S H + FS+ G Y K + +P GS ARG Sbjct: 517 HQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGV 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L+ E I T + Y +F TK G V++ + F + G IA+ Sbjct: 577 HIKNLLPLDNEEYIATALSERNF---HQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLIAV 633 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V+ E+++++TT G +RF +R GRN+ GV+GISL +GD+V+ Sbjct: 634 NLKPGDELIGVKVVKDESEVIITTHDGLAIRFACRELRAM-GRNAAGVKGISLRQGDEVV 692 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S A++ +A Sbjct: 693 SGAVLDPGEARE------------------------------------------------ 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + T+SEKGFGK+TS +++ R GKG+ V+ ++ G +V+ PV+D +++I+ Sbjct: 705 ---LFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT--SKTGKVVSSMPVSDQEELIIF 759 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +IR+ ++IR R+T+GV + D++V+ + I Sbjct: 760 TSANKIIRLGTSDIRSVGRSTQGVKMVDLENDQKVICADLIIPE 803 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 9/254 (3%) Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G +++ + + + D I ++ + ++ ++ G R + Sbjct: 457 KGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKR-TLLEY 515 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTE 770 R G+ G ++ D + ++ + + Y+ Sbjct: 516 YHQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARG 575 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 E I+ + + + L V++KG K+TS F N G+ A Sbjct: 576 VHIKNLLPLDNEEYIATALSERNFHQRHYFLFVTKKGMVKKTSIEMF--KNMRSLGLIAV 633 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 ++ L+ V V D ++I+ + G IR E+R R GV S + + Sbjct: 634 NLKPG---DELIGVKVVKDESEVIITTHDGLAIRFACRELRAMGRNAAGVKGISLRQGDE 690 Query: 891 VVSVERIRESEIVD 904 VVS + E + Sbjct: 691 VVSGAVLDPGEARE 704 >gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] Length = 865 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 359/926 (38%), Positives = 521/926 (56%), Gaps = 102/926 (11%) Query: 1 MTEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 M + I + E + + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MADDITPATPEAGGIIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G ++NP+ + LME I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +VA + EV+VRRTK+ L KA +RAH+L GL A+ +DEV+ +IR S + Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM+ + + E+Q AILE++L RL L R Sbjct: 420 IARTGLME--------------------------LLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E +IL+S R GI+ EL ++ ++ R+T +V DM ED Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRKTMLVPYDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVTVS GYVKR YRAQ+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I+ + + Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYD---AAPYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + ++D+LL +K Q + Sbjct: 631 TKAGLVKKTSLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF S +R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTASDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRT ++R+ R G Sbjct: 731 ----------------------------------FVFTATDGGYAKRTPVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G+LV V + D+I+ ++ G +IR VN +R R T GV + + Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNGVRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910 K + VV + R E+ E + Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVEGD 840 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ L Y + R GG + R++ +L + +L S Sbjct: 625 PYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLIS 684 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S +G+ + ++ +V AT Sbjct: 685 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 737 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 738 GGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 797 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR+++GV+ I+L K D V+ +A A + +E + Sbjct: 798 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEGDVADDETVEGAAETIGT 856 Query: 771 EITSLKNDS 779 + + Sbjct: 857 DEGEAPSAE 865 >gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] Length = 828 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 367/897 (40%), Positives = 533/897 (59%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + Sbjct: 2 QRERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K TVDF N+D S +EP VL + PN+L NG GIAVGMATNIP Sbjct: 122 EVRMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL E+VDG +A+I NP++++ LM+ + PDFPTG +I G G++NAY TGRG +VIR Sbjct: 182 PQNLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIYGYEGVRNAYMTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+ Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L ++ ++ R E+V+ Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMIYYIKHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L+ A RAH+L GL I + NLDEV+ IR SP+ TA+ +LM+R Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTG+ R I E I+ I Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LSS + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LSSPEKQMEIIREELLKVREVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGG+G +G + +DF+ +FI STH +LFF++ G Y KV+ +P Sbjct: 516 FPVSGYRRQARGGQGVTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+AL NI+ L GE+I + + ++V AT +G V++ L DF R Sbjct: 576 RAARGRALANIMELQPGEKIRAYINIRNFD---EPGFIVMATTNGIVKKTPLDDFSHPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ ++ DE+L E+ I+L G VRF + IR GR ++GV+GI+L Sbjct: 633 NGLAAITIEEHDELLDARLTDGEHQIILAKSSGFVVRFAEAEIRSM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G++ ISM D Sbjct: 692 EGEKCISMVTTKRFDTA------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+ Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLLDVNDD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D +I+++ G + R V++IR+ R T GV + + + ++ R+ +S+ +++ Sbjct: 758 DDLIIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKSDDEGDSD 814 >gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386] gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386] Length = 819 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 375/886 (42%), Positives = 536/886 (60%), Gaps = 82/886 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M ++G+ ++K Y K AR Sbjct: 12 KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I GEV+GKYHPHG++A+Y A+ R+AQ+++ R LLI G GN+GS+DGD AA RYTE R+ Sbjct: 72 IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K ++ LL+D+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HN G Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV DG VA+I+NPDI +D L+ I GPDFPTG +I GR+GI AY TGRG + + G I Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKI 251 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E++ +E I+V E+PYQVNKA ++E+IAELVR K++ I+DLRDESDR G RVVIELKR Sbjct: 252 EESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELKR 311 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G +++ILN LY+YT LQ+ F + +AL P L IL+ ++ R VV RRTK+ Sbjct: 312 GEESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTKFE 371 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L+KA RAH+L G IA+ N+DEV++IIR S + A+ +LM Sbjct: 372 LDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMA----------------- 414 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 SEVQ +AIL++RL RLTGL R I E L + I+E ILS + Sbjct: 415 ---------GFAFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDK 465 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 + IIK+E+ +K++ PRRT I + +++ ED I E++VVT++ GYVKR P+ VY Sbjct: 466 IYAIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVY 525 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG G S + ++D + D++I S+L F++ G V+ KV+ +P S QARG+ Sbjct: 526 RAQKRGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGR 585 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + NI+ L + E ++TI+ E E + + F T+ G V++ L F IN++G A+ Sbjct: 586 LISNIIKLQEDEMVSTIIKVREFE---KDKDIFFVTRKGVVKKTNLELFASINKAGIKAI 642 Query: 677 KLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 L DE++ + ++I L T+ G +RF + +R GR + GV+GI+L D Sbjct: 643 GLKDDDELIFAGLTSGTLKDEIFLATREGFAIRFSENDVRSM-GRTASGVKGITLRPEDV 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +++ AI+ Sbjct: 702 IVAGAII------------------------------------------------YASED 713 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L + ILT+SE+G+GKRT ++R+ +R GKGI K + G + V V+D+ +I+ Sbjct: 714 LSGKTILTISEEGYGKRTKLEEYRLQSRGGKGITNLK--KNTKTGKISDVKIVDDSSEIM 771 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L++ +GTLIR VN I I RAT GV I ++E+V S +I Sbjct: 772 LITSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKVASTVKITPE 817 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 12/249 (4%) Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ K F R+ +++ E + E ++ T G R PI R Sbjct: 474 VKKIKED-FSDPRRTEIRDARVEIGIE----DLIKDEEVVVTLTDKGYVKRTPIDVYRAQ 528 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 R +GV ++ + D + M I + D+ H + + L Sbjct: 529 K-RGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLI 587 Query: 777 NDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++ + +S K++ I V+ KG K+T+ F N++ GI+A + Sbjct: 588 SNIIKLQEDEMVSTIIKVREFEKDKDIFFVTRKGVVKKTNLELFASINKA--GIKAIGLK 645 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +E+ + D+I L + +G IR N++R R GV + ++ +V+ Sbjct: 646 DDDEL-IFAGLTSGTLKDEIFLATREGFAIRFSENDVRSMGRTASGVKGITLRPEDVIVA 704 Query: 894 VERIRESEI 902 I SE Sbjct: 705 GAIIYASED 713 Score = 91.4 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 6/162 (3%) Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 + + + A + +E S + + E ++L E+ ++T+++K Sbjct: 455 ELKAILSDPDKIYAIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDK 514 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+ KRT +R R G G+ AT++ + + + ++ + D +++ + KG + + Sbjct: 515 GYVKRTPIDVYRAQKRGGIGVSATNILEDDI---IKDMYIAKNLDSLLIFTTKGKVHDIK 571 Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 V EI AS+ +G I +DE V ++ ++RE E + Sbjct: 572 VYEIPEASKQARGRLISNIIKLQEDEMVSTIIKVREFEKDKD 613 >gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] Length = 787 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 365/870 (41%), Positives = 539/870 (61%), Gaps = 85/870 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ + Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L + +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + +++++D G +IR + I RAT GV Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGV 787 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 76/545 (13%), Positives = 168/545 (30%), Gaps = 83/545 (15%) Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RT+ K V+ V I+R ++ N + Sbjct: 239 VLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGV 298 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + +I++ D+S + + ++++QT + G I + L I+ Sbjct: 299 RFVIEVKRDASANVILNNLFKMTQMQTNFGFNM---LAIQNGIPKILSLRQILDAYIEHQ 355 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVVTVSH 544 +++ R+R + ++ + ++ E +S Sbjct: 356 KEVVVRRTRFDKE-----KAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK 410 Query: 545 LGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +R + R +R G R + +D + + V + Sbjct: 411 FKLSERQSQAILDMRLRRLTGLERDKIQSEYDD-----LLALIADLADILAKPERVSQII 465 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 L + K I ++ +++ + ++ + G ++R Sbjct: 466 KDELDEVKRKFSDKR-------RTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQ 518 Query: 663 SDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +F R G + D + + + + + +L T G+ R I GR Sbjct: 519 DEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEI-PEYGRT 577 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + G+ ++L K D+ S+ V++ ++D Sbjct: 578 AKGLPVVNLLKLDEDESIQTVINVESDR-------------------------------- 605 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEI 838 + ++ + G KRTS +F N G++A ++ Sbjct: 606 --------------SDDAYLFFTTRHGIVKRTSVKEFANIRQN----GLKALNLKD---E 644 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 L+ V + II+ + G +R + +R SR GV + + + VV I Sbjct: 645 DELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLIT 704 Query: 899 ESEIV 903 + + V Sbjct: 705 DQDEV 709 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D++ S +L AD + + + +S + + + S K + + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSL 492 Query: 790 CQELKLKEQFIL-TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E ++E +L T+S +G+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a] gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a] Length = 834 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 361/911 (39%), Positives = 517/911 (56%), Gaps = 94/911 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR L++G GNFGS Sbjct: 58 YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE R+ A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG G Sbjct: 118 GNDPPAAMRYTEARMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +D+ + + L+E II+GPDFPT +I+GR+G Sbjct: 178 GIAVGMATNIPPHNLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIVGRSG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V ++E+ R Q+VVTE+PYQVN + EKIAELVR+ ++ I Sbjct: 238 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ F VNM+A+ P L Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR Sbjct: 357 QMIRYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARG 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM+R LSE+Q AIL+++L RL L R I + Sbjct: 417 QLMER--------------------------FTLSEIQATAILDMQLRRLAALERQRIID 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L I E IL+S R II +EL V ++ RRTR+V DM ED I + Sbjct: 451 EAAELRARISELEAILASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVTV+ GY KR +YR+QRRGGKG G +R++D V F+ +TH +LFF++ Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K LP + A+G+ + NIL+ +Q ERI ++ + E Y+V ATK G Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVIALKDYEV---APYLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++ LSDF G +A+ L DE+++ +D+LL ++ Q +RF + Sbjct: 628 LCKKTALSDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ D+++SM +V+ Sbjct: 688 RPM-GRATSGVIGMRFDAEDELLSMDVVVPGTTAD------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +L + G+ KRT ++ + R GKG+ + Sbjct: 722 --------------------------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI- 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ G LV V+ +DQ+ ++ G ++R ++R A R T GV + +VV Sbjct: 755 -VSTRGGLVGALVVDPDDQLYAIASNGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVG 813 Query: 894 VERIRESEIVD 904 V R ++E + Sbjct: 814 VARNADAEDTE 824 >gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] Length = 816 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 349/885 (39%), Positives = 517/885 (58%), Gaps = 83/885 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++ +N+ Y K AR Sbjct: 7 EQINIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSAR 66 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ ++YDAL RMAQ++S+R +++GQGNFGS+DGD AA RYTE R+ Sbjct: 67 VVGDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMS 126 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A L D+ K+TV FRPNYD S QEP VL + PN+L+NG GIAVGMATNIP HNLG Sbjct: 127 RLAGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 186 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ DG + +DNP D+ ++ +I GPDFPTGA I G G+ +AY TGRGSI IRG + Sbjct: 187 ELCDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGRGLYDAYTTGRGSIKIRGRVEV 246 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ D + +V+ EIPY +NK++++EKIA L+ + RI ++DLRDESDR+G R+V++LK+ Sbjct: 247 EERKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLKK 306 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G AD+I N LY+YT L++ F +NM+ + +P + +L+ F+A R EV++RRT Y Sbjct: 307 GVIADIITNALYKYTPLETSFGINMMVVADNRPATLNIQQMLEHFLAHRREVILRRTAYD 366 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 367 LRKSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMER---------------- 410 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q +AIL++RL RLT L R + +E N L I+ IL++ Sbjct: 411 ----------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEV 460 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L G+I+ E+ ++D TPR+T ++E L + D I ED+V+T+S GY+KR + Y Sbjct: 461 LRGVIRDEIKEIQDRYATPRKTEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNY 520 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G Sbjct: 521 QQQKRGGKGVAGVSTSADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGA 580 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L +++ E + T + E + Y +F TK G V+R+ + +G IA+ Sbjct: 581 HIANLLPMDKEEFVATALAIREFS---SERYFLFVTKRGMVKRSCTELYKNCRSTGIIAV 637 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE+L+V+ ++LL T+ G RF IS IR GR + GV+GI+L D+V Sbjct: 638 SLKEGDELLTVKEIDDNAEVLLATQQGLSNRFHISGIRP-TGRGAAGVKGIALKGADRVA 696 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + I+ + Sbjct: 697 AGVIMTGNGRNE------------------------------------------------ 708 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +LTVS G+GKRTS + + NR G G+ V+ + G ++ V D ++L+ Sbjct: 709 ---VLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVLPEDDLLLL 763 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +IR+ V+ I RAT+GV++ D+ V + + ++ Sbjct: 764 TSANKIIRLSVSGISSVGRATQGVMLVRMENDDTVTGFDLVDPND 808 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 102/293 (34%), Gaps = 79/293 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ DE+++ I+ +K R + + R + + + L Sbjct: 382 IALDNIDEVVA---------IIRASKNAVEARENLMERFGLSERQAQAILDMRLQRLTNL 432 Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + ++I ++ + + + R + ++ + + V ++ Sbjct: 433 ERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATPRKTEVLEDLEGIN 492 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L E ++T+S +G+ KRT +++ R GKG+ S + + + A + Sbjct: 493 ILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQSFCAT---TN 549 Query: 850 NDQIILVSDKGTLIRVPVNE------------------------------IRIAS----- 874 + Q++L ++ G + +PV++ IR S Sbjct: 550 HQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREFSSERYF 609 Query: 875 --------------------RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R+T G++ S + + +++V EI D AE Sbjct: 610 LFVTKRGMVKRSCTELYKNCRST-GIIAVSLKEGDELLTV-----KEIDDNAE 656 >gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] Length = 809 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 364/889 (40%), Positives = 530/889 (59%), Gaps = 94/889 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K Sbjct: 5 NTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DPPAA RYTE R Sbjct: 65 ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEAR 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ + Sbjct: 185 LAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HI + +R+ I VTEIPYQVNKA ++ KIAELV++++IV I+DLRDESDRQG RVVIEL Sbjct: 245 HIGEVD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR++ Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A+DRAH+L GL A+ +D ++ IIR S N +TAR+ L+ Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAE-------------- 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S +Q +AIL+L+L RL L R I +E L I D+LS Sbjct: 410 ------------FDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++ ++K++ +K PR T I +++ ED + D++VT+S G++KRVP Sbjct: 458 EKIYALVKEDAKDLKGSYGQPRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612 +V+R Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P S Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N++ + Q ERIT I+ + +++ AT G +++ L +F + SG Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IAM L + DE+++ T+E DILL T++GQ +RFP+S +R + R S GV+ I L+KG Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRT-SLRASGGVKAIVLSKG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++TV+E G GK T+ ++ +R+G G+ V +++ G +VA V++ DQ Sbjct: 707 ------LVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758 Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895 ++L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 10/215 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 + I+ ++ G R P + R R G+ G+ + D V +++ D Sbjct: 496 LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLL 554 Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 ++ ++ + + I+ + + F+L + Sbjct: 555 FFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHFLLMAT 614 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 KG K+TS +F G+ A D++ LVA + I+L + G IR Sbjct: 615 NKGEIKKTSLQEFTAVR--SSGLIAMDLAT---SDELVAAVETTEEKDILLATRMGQSIR 669 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 PV+E+R + RA+ GV +K + VVS++ +E Sbjct: 670 FPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704 >gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] Length = 831 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 355/902 (39%), Positives = 543/902 (60%), Gaps = 89/902 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K Sbjct: 4 RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE + Sbjct: 64 ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHN Sbjct: 124 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GSI++R Sbjct: 184 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSIIVRAKV 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G R+VI++ Sbjct: 244 EIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDV 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EEVV RRT+ Sbjct: 304 RRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEVVRRRTE 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 364 FDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------------- 407 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q +AIL+LRL RLTGL R+ I +E L I + DIL+ + Sbjct: 408 ----------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQ 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R+ II EL+ ++++ RRT + + ++EDED I ED++VT++H GYVKR+P+ Sbjct: 458 ERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPV 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + +P A Sbjct: 518 DEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAA 577 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN+L ++ E++T ++ + E + F T+ G V+R +++F I +G Sbjct: 578 QGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTLVTEFKNIRSNGI 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG L GD Sbjct: 637 KAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGARLRDGD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +I A + Sbjct: 696 YLIGAAPLN--------------------------------------------------- 704 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ +L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + V ++ + Sbjct: 705 --EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTVQGDEDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-----AES 908 ++V+DKG +IR V + R+ GV + D V ++ ++ + + AE Sbjct: 761 MVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEE 820 Query: 909 TE 910 E Sbjct: 821 AE 822 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 17/231 (7%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+ G VKR ++ ++ R G + + + D + ++ IV +++ + LG Sbjct: 612 FFVTRQGTVKRTLVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 669 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV + A A + L G+ + P ED+ V+ ++ G ++ Sbjct: 670 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 720 Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 S++ I G + +K + + + T + D+++ T G +RF + ++ Sbjct: 721 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 778 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R+++GV I + V +M V A+ D + + Sbjct: 779 QTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 829 >gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92] gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054] gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17] gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17] gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92] gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054] gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17] gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92] gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054] Length = 838 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L K +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] Length = 831 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 384/900 (42%), Positives = 549/900 (61%), Gaps = 88/900 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY Sbjct: 6 NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H + E++D V +ID+P +L+ +++ I GPDFPTG +I G+ GIK AY TGRG I IR Sbjct: 186 HRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGRIKIRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I IA++RDESDR G RVV+ Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIRVVV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RR Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSVVIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+++ Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEK------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AIL++RL RLTGL RD I NE L EI+ IL Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILR 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP Sbjct: 459 SEELLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N++SL E+I + + + + F TK+G ++R LS+F I G Sbjct: 579 AIGKAVVNLISLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRSVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + E IL+ T G CVRF + +R GR + GV I Sbjct: 636 VKAINLDGDDELVTAKIIHPEIQQILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V Sbjct: 695 PKDYVIGATVVSS----------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 708 -----ENEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R + E E + E Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEKEIEEDLPE 819 >gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv] gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012] gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium tuberculosis H37Rv] gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012] Length = 838 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ +D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 806 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 358/884 (40%), Positives = 540/884 (61%), Gaps = 87/884 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 +KG+ V + ++M+ SYL Y+++VI+ RA+PD++DGLKPVHRRI++GM +G++ N Y Sbjct: 6 DKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMGK+HPHG+++IYDA R+AQ+++ R L++GQGNFG++DGD AA RYTE Sbjct: 66 KSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMATN+P Sbjct: 126 LRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNMPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G ++ IDN +I +D LM I+GPDFPTGA I+GR GIK AY TGRG I +R Sbjct: 186 HNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 V+ IE+ ++ +IVV EIPYQVNK+ ++ KIAELV+ K I I+ +RDES R+G R+ I Sbjct: 246 VAEIEEEK-NKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIRIAI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKR A+ +V+LN+LY+ T +Q+ F + +AL P+ L ++ +V + VV RR Sbjct: 305 DLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVVTRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L KA+ RAH++ GL IA+ N+D ++ I+R S N + A+ + + Sbjct: 365 TKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEE------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E+Q +AIL++R+ RLTGL R+ + E L I E +IL Sbjct: 413 --------------FGLTEIQGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILE 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + +L+ IIK EL+ ++D+ RRT I +++ ED I ED+V+T++ GY+KR+P Sbjct: 459 NHEKLMSIIKDELIEIRDKFGDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y+ Q+RGG+G S + R+EDFV DLFI STH +LFF++LG Y K + +P S Q Sbjct: 519 EGTYKPQKRGGRGISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQ 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ++G A+INIL+L+ E++ +I+P E + NL +V ATK G ++R + I +SG Sbjct: 579 SKGTAIINILNLSANEKVQSIIPVREYD---PNLNIVMATKDGIIKRISFEEIKNIRKSG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 AM L D I+ T E++++L TK G +RF +R GR S+GV+ I L K Sbjct: 636 INAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVR-LTGRTSMGVKAIELNKD 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ +V Sbjct: 695 DEVVGFDVVS-------------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++++L +S+ GFGK T ++RI +R+GKGI V ++ G LV+ ++ ND+ Sbjct: 705 ---ADKYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKV--KDKTGDLVSAKIIDKNDE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 I++++ +G +IR+ I + R+T GV + + E VV+V + Sbjct: 760 IMMITSEGIIIRIETEGISVMGRSTSGVKLMNIKDSE-VVAVAK 802 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 9/215 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745 +E+ ++ T+ G R P + R G+ ++ + D V + I D Sbjct: 498 IIKEEDVVITLTQFGYIKRMPEGTYKPQK-RGGRGISALTTREEDFVNDLFITSTHDLIL 556 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + Y+ + S + I+ ++ Sbjct: 557 FFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPVREYDPNLNIVMATK 616 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G KR S + I N GI A + +++ D++ILV+ KG IR Sbjct: 617 DGIIKRISFEE--IKNIRKSGINAMTLRDG---DSIIGTRLTTGEDELILVTKKGMSIRF 671 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +E+R+ R + GV KD+ VV + + Sbjct: 672 KEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSAD 706 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 120/304 (39%), Gaps = 29/304 (9%) Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + + I++L + I+ E S + + + T+ R K + Sbjct: 320 YKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVVTR-----RTKFD-LEKAK 373 Query: 670 RSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRN 720 I + LD+ D I+ + ++ +D K+ F ++ I+ R Sbjct: 374 ARAHIVEGLKIALDNIDRIIEIVRSSRNDD---EAKIKFTEEFGLTEIQGQAILDMRIRR 430 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 G+ L + + ++ A++ E + + + + + + + + Sbjct: 431 LTGLEREKLDEEYK-----ELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFGDLRRTV 485 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ E +++ +E ++T+++ G+ KR ++ R G+GI A + + + Sbjct: 486 IKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTREEDFVND 545 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897 L F + +D I+ ++ G + EI +SR +KG I + + +E+V S+ + Sbjct: 546 L---FITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPV 602 Query: 898 RESE 901 RE + Sbjct: 603 REYD 606 >gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917] gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917] Length = 891 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 357/916 (38%), Positives = 533/916 (58%), Gaps = 67/916 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPVGPGSGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G +A+I+NP++D +ALM II GPDFPTG ILGR+G Sbjct: 181 NGSAGIAVGMATNIPPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLTGRGSVTMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L +R LSE+Q AIL+++L RLT L D Sbjct: 421 ARQQLQERH--------------------------GLSEIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ G+I++EL ++D RRT I++ ++D D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRDRYPIERRTEILDLAGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +GR+G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGRAGTRSQGEEAVKLFIGCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ ++ ++ T Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREELITSLLAVSAFN---DDTDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ ++ G + F +S Sbjct: 632 QGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L +GD ++SM ++ AD + + Sbjct: 692 EELRPL-GRTARGVRSMNLREGDALVSMDVLPVELADRVAQSSDDGGEAEADAEDGP--- 747 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + ++L S G GKR FR+ R+G G+RA Sbjct: 748 ----------------------TASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAI 785 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 786 KF--RTDSDVLVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 843 Query: 891 VVSVERIRESEIVDEA 906 + V + + DE Sbjct: 844 LSEVVLVPPAPEEDEE 859 Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 15/254 (5%) Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + R+ + + D ++ E ++L T+ G R P+S R + Sbjct: 491 RDRYPIERRTEILDLAGGLDD----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGT 545 Query: 722 VGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 G G + V I D + Y + Sbjct: 546 RGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLLP 605 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E I+ + +L +++ G+ KRT F SN G+ A + + Sbjct: 606 IPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAF--SNIRSNGLIAIGL---EDG 660 Query: 839 GALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 AL V D +++ S G I R+ E+R R +GV + + + +VS++ Sbjct: 661 DALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALVSMDV 720 Query: 897 IRESEIVDEAESTE 910 + A+S++ Sbjct: 721 LPVELADRVAQSSD 734 >gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 875 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 350/915 (38%), Positives = 537/915 (58%), Gaps = 73/915 (7%) Query: 1 MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + +E E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 4 MADPTEPTGGVPDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 63 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF Sbjct: 64 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 123 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GS+D DPPAA RYTE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 124 GSIDNDPPAAMRYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLL 183 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE++DG +A+I NPD++ +M+II GPDFPTG ILGR+G Sbjct: 184 NGSSGIAVGMATNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSG 243 Query: 237 IKNAYATGRGSIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y +GRGS+ +RGV+ IE DR+ I++T++PYQ NKAA++E+IA +V +K+ Sbjct: 244 IRETYLSGRGSVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKK 303 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R + V+LN L++ T LQS FS NM+AL +P Sbjct: 304 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITL 363 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L+ +L F+ FR + +RTKYLL KA +R H+L+GL +A+ LDE++ +IR + + Sbjct: 364 SLLRMLNVFLDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSV 423 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 A+++L + L++VQ AIL+++L RLT L D Sbjct: 424 AKKQLQE--------------------------IHGLTDVQADAILQMQLRRLTALESDK 457 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L ++I + DILS++SR+ IIK EL+S+K++ RRT I++ +ED D Sbjct: 458 IRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQVRRTEILDLGSGLEDIDL 517 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P++ + A RG +G+SG + E+ V + H ++L F Sbjct: 518 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 577 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ + ++ Y++ T Sbjct: 578 SVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLISVSSFD---DDNYLLMLT 634 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G ++R +S F +I +G I++ L+ D + V + + +L+ +K G + F ++ Sbjct: 635 IGGFIKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVLIGSKAGMTIHFRLND 694 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L GD ++SM ++ AD Sbjct: 695 NELRPL-GRTARGVRSMNLRDGDSLVSMDVLSKELAD----------------------- 730 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 N E + + +IL S G GKR FR+ RSG G+RA Sbjct: 731 --------RIASTNDDEAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAM 782 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 ++ LV + ++ ++++LVS+KG ++R ++I SRA GV + + Sbjct: 783 KF--RSDTDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLDSGDH 840 Query: 891 VVSVERIRESEIVDE 905 + + + +E Sbjct: 841 LSEIVLVPPQLADEE 855 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 21/255 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ ++ ++ G++KR P+S + R G + + D D + + + S+ SVL Sbjct: 624 FDDDNYLLMLTIGGFIKRTPVSAFSKIRANG--LISINLEDGDALRWVRLASSADSVLIG 681 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES--------- 641 S G ++ L ARG +N+ + + + D Sbjct: 682 SKAGMTIHFRLNDNELRPLGRTARGVRSMNLRDGDSLVSMDVLSKELADRIASTNDDEAI 741 Query: 642 ----SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQEN 694 + +++ A+ G +R ++ F RSG AMK S DE++ ++ + Sbjct: 742 NSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSDTDELVGLKVLDKGE 801 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 ++LL ++ G VR I R + GVR L GD + + +V AD + Sbjct: 802 EVLLVSEKGVIVRTSADKI-SQQSRAATGVRLQRLDSGDHLSEIVLVPPQLADEEVNSDS 860 Query: 755 MKHMSAQRRLISGDT 769 + S Sbjct: 861 LSSNSDSGADTPPKD 875 >gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2] gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2] Length = 864 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 386/911 (42%), Positives = 544/911 (59%), Gaps = 72/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 EFAQEIFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YDAL RMAQ++S+R +LI+GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH L DL K+TVDF NYDGS EP V ARYPN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+++ +A+ID+PD D + L+ + GPDFPT +I G GI+ AY TGRG +V+ Sbjct: 183 PPHNLTEILNATIALIDDPDTDDETLLSHVPGPDFPTAGIINGAAGIREAYLTGRGRVVM 242 Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R +H E+ + I+VTE+PYQVNKA ++E+IAELVREK+I I +LRDESD+ G R Sbjct: 243 RARTHFEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+RG DV+LN LY+ T +QS+F +NMVA+ G +P L IL F+ R EVV Sbjct: 303 IVIELRRGELPDVMLNNLYQQTQMQSVFGINMVAIVGGQPRTLGLRDILTVFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAH+L GLA+A+AN+D ++ +I+ +P AR LM ++W++ + Sbjct: 363 TRRTIYDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHA 422 Query: 430 LIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L++ D ++ S D + LS+ Q +AILE+RL RLTGL +D I E SL Sbjct: 423 LLERADAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSL 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL S SRL+ +I+ EL+++ +E RRT IV D+ ED I ED VV Sbjct: 483 LEKIIDLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEEDRVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S GY+K LS Y++QRRGG+G+S M+DED + L + STH L F++LG VY Sbjct: 543 TLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGRVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP G+ ARG+ ++NIL L +GER+ ++P Sbjct: 603 RKVYQLPQGARGARGRPVVNILPLQEGERVNALLP------------------------- 637 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719 V ++ I T GQ + P+ R Sbjct: 638 --------------------------VREFVDDHYIFFATATGQVKKTPLVDFSRPRQ-- 669 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G+ I L D+++ + E + + + R + + Sbjct: 670 --AGIIAIDLRDDDRLVGARLTD----GSRELMLFSNAGKSIRFAEADVRSMGRTAGGVR 723 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + + L + E +LT +E G+GKRT DF + R G+G+ A S+ N G Sbjct: 724 GIRMDEMQRVVSLLVVGEGQVLTATEHGYGKRTPIDDFPLQGRGGQGVIAIQTSERN--G 781 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ALV V D D++IL+SD GTL+R +++I SR T+GV++ + DE++V + + Sbjct: 782 ALVGAALVQDEDEVILISDAGTLVRTEISQISSVSRNTQGVILIRLSDDEKLVQLAAVSA 841 Query: 900 SEIVDEAESTE 910 + +A+ E Sbjct: 842 MSVDSDADRDE 852 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 16/235 (6%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + + + G VK+ PL + R+ G + +RD+D + + ++ FS+ Sbjct: 643 DDHYIFFATATGQVKKTPLVDFSRPRQAG--IIAIDLRDDDRLVGARLTDGSRELMLFSN 700 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + A G + + +++ +R+ +++ E V+ AT+H Sbjct: 701 AGKSIRFAEADVRSMGRTAGG---VRGIRMDEMQRVVSLLVVGE-------GQVLTATEH 750 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + DF R G+ + + + + + E++++L + G VR IS Sbjct: 751 GYGKRTPIDDFPLQGRGGQGVIAIQTSERNGALVGAALVQDEDEVILISDAGTLVRTEIS 810 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 I + RN+ GV I L+ ++++ +A V D D Sbjct: 811 QISSVS-RNTQGVILIRLSDDEKLVQLAAVSAMSVDSDADRDENATEEDGSSETE 864 >gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius] Length = 858 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 547/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + V Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSKAAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG++++YDAL RMAQ +S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKEAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E N L I I E IL Sbjct: 414 ---------------FNLSHIQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L IIK+EL +K++ PRRT I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIKEELTEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y QRRGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P + + + + F T++G V+R LS+F I + Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFD---ESKSLAFFTRNGVVKRTSLSEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + T +++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIATPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ + + Sbjct: 695 IDTDFVVDADVINNIE-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTV +KG GKRT+ ++R++NR+G G+ A +S + G +V V+D Sbjct: 711 --------QEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV + IR A R T GV+I + KD++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAKCPKEDEEIELDEN 820 >gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7] gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7] Length = 819 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE+GI V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM +G Y Sbjct: 2 EERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ DL +DT+DF PNYDG QEP VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL EV++ +AV +PDI + LM I+GPDFPTG ILG+T IK AY TG G IV+ Sbjct: 182 PHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYILGKTAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G ++ IVVTEIPY VNKA M+EK+++LVREK+I I ++RDES+R G RV Sbjct: 242 RAKTEIEE-KGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ TSLQ+ F N +AL +P+ L ++ ++ +EEV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMITLYLDHQEEVIK 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA DRAH+L GL A+ +D ++ +IR S E + LM+ Sbjct: 361 RRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEE---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +S+ Q +AI E++L RL GL R I ++LN L I + DI Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R RLL II EL +KD+ RRT I++G D+EDED I ED+++++++ GYVKR Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYVKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ Q RGG+G G+ +D V+ L +STH +LFF++ G VY+ K + +P Sbjct: 515 MPVDTYKTQNRGGRGIKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L+L++ E++ +++ + N+ Y+ F T G V+R +++F +I Sbjct: 575 RSAKGLPVVNLLNLDKEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++SV+ + IL+ G+ VRF + +R GR++ GV+GI++ Sbjct: 635 QSGKIAISLRDDDQLVSVKLTGGNDQILIAASNGKLVRFEETNVRPM-GRSASGVKGINV 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G +VI M Sbjct: 694 -DGSEVIGMT-------------------------------------------------- 702 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + ++I+ V+E+G+GK + ++R+SNR GKG++ + ++ N G +VA+ VN Sbjct: 703 ---TDKEGKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERN--GQIVALRAVNG 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ +++++D G +IR+P+ +++ A RAT+GV + + +V SVE + ++ Sbjct: 758 DEDLLIITDDGIMIRLPMEQVKTAGRATQGVRLIKVNAENKVSSVEVVEKA 808 >gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis] Length = 859 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 351/896 (39%), Positives = 542/896 (60%), Gaps = 88/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 2 TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA R Sbjct: 62 PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG + Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR + IE+ + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EV Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+ Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665 G+ A+G+A+ N+L+++ +++ + D+ N+ Y++F TK G +++ L F Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+ Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693 Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 G+ L D+V+ M + H + Sbjct: 694 GMRLDDDGQDEVVGMISIKHPE-------------------------------------- 715 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 + V D + +++++ G IRV V ++ I RAT+GV + +K + + SV + Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816 Score = 86.0 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 19/238 (7%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730 + +D+ DE++S+ +++ RF +S I+ R G+ L Sbjct: 384 IAVDNIDEVISIIRSSKD---AAEAMSRLIERFDLSDIQARSIVDMRLRALTGLERDKLR 440 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + I MA + H +A +R M+ + ++ + +E S + E Sbjct: 441 AEFEEI-MASINHLEALLADRALLMELVKSELL----EIKEKYGDTRKSEIIYASEEFNP 495 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ + I+T+S G+ KRT +FR R G G + +D + + + + + + + Sbjct: 496 EDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSA---SMH 552 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 I+L + KG + V EI ++ KG I + D++V + RI+ E Sbjct: 553 ATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKE 610 >gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428] gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428] Length = 859 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 365/912 (40%), Positives = 556/912 (60%), Gaps = 69/912 (7%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ + + +++ +EM S+L Y+++VI+ RA+PD RDGLKP RRIL M +GV Sbjct: 2 PNQNPNEKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+K++KCA+I G+ MG YHPHG+ AIY L MAQ W++R +L++GQGNFGSV+GDPPA+ Sbjct: 62 NRKHIKCAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPAS 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL+ L+DD+ K+TVDF P YD EPVVL A +PN+LVNGG GIAVGMA Sbjct: 122 MRYTEARLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E ++G A IDNP+I LD LM+ ++GPDFPTG ++ G GI++ + TGRGS Sbjct: 182 TNIPPHNLSECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQGSAGIRSYFETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 + +RG + E+ G REQI+VTEIPY VN+A ++++IAEL EK + I+D+RDESD Sbjct: 242 VRVRGRASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESDE-N 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVI+LKR + VILN L+++T+L+S FSVNM+A++ +P L + ++ R E Sbjct: 301 TRVVIDLKRDGNPKVILNNLFKHTALESSFSVNMLAIDHGRPRLLGLKDAIACYIEHRRE 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 +++RRT++LLN A A L G IA+ANLD+ +RIIR S + + A+ +LM SW + + Sbjct: 361 IILRRTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAV 420 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + L LI + + DG +E Q IL+LRL +LTGL R+ I++E + L + I++ Sbjct: 421 EQLGVLIRSEARVV--DGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDL 478 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +DIL+ R+L IIK EL +++D+ + RRT IV ++ ED I E ++VT++H G+ Sbjct: 479 MDILAKEHRVLTIIKDELRAIQDKYGSERRTEIVPEQGEIAIEDLIANEGVIVTLTHNGF 538 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +KR +S YRAQRRGGKG G+ R+ DFV LF +TH ++FF+ G Y E Sbjct: 539 IKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCYVE 598 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNV 657 +V+ +P G+ ++G+++ N+L L Q E+I + E+E+ + L++VFAT+ G V Sbjct: 599 RVFEIPEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIV 658 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +++ L++F I + G IA+++++ D ++ + T ++I+L T G +RF +R Sbjct: 659 KKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELRD-Q 717 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN+VGV GI D V++ A+V Sbjct: 718 GRNTVGVWGIRPDTKDYVVAAALVN----------------------------------- 742 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 KE +L E G GKRT ++RI +R GKGI + ++ Sbjct: 743 ------------------KEAMLLVAGENGIGKRTGFDEYRIQSRGGKGIITMKTT--DK 782 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G++ V + D+++L+++KG ++R V EIR R +GV + ++E + + + Sbjct: 783 TGSVAGALTVVETDELMLITNKGKMVRTRVAEIRETGRNAQGVKLIDLRENEILQGIAPV 842 Query: 898 RESEIVDEAEST 909 +E ++AE Sbjct: 843 VSNEDEEKAEGE 854 >gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] Length = 817 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 371/901 (41%), Positives = 528/901 (58%), Gaps = 87/901 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE+ + V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N Sbjct: 2 DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG+ ++YDA R+AQD+S R L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF PNYDGS QEP VL ++ PN+LVNG GIAVGMAT Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEVVDGCV +ID PD L+ +M I+GPDFPTGA I+GR GI AYATGRGS+ Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + +E + + +IVVTEIPYQVNKA ++E IAEL R + I I LRDESDR+G Sbjct: 242 KMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGL 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+ + D+ILN+LY++T LQ F + M+AL P +L+ +L+ ++ + +V Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR ++ L+KA RAH+L GL IA+ ++DEV+R IR S ETA+ LM Sbjct: 362 ITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMT--------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L++ Q AIL++RL RLTGL R+ I E L I Sbjct: 413 -----------------AFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +++ I+K ELL K RRT++ ++ ED I E MV+T++ GY+ Sbjct: 456 SVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYM 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +VY Q +GG+G G+ +DED V L S +VLFF++ G VY+ K + +P Sbjct: 516 KRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPE 575 Query: 609 GS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + ++G A INIL L+ GE++ ++ + + S N + AT++G V++ +L++F Sbjct: 576 ANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMN---LFMATENGLVKKTELAEFKN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + R+G IA+ L D + V + I+L TKLG + F S +R GRN+ GVRGI Sbjct: 633 VRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPM-GRNTRGVRGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SLA GD+VI ++ Sbjct: 692 SLAPGDRVIGADVLAP-------------------------------------------- 707 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +LTVSE+GFGKR + ++I R GKG + ++ + G +V V V Sbjct: 708 ---------DCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITP--KTGVIVGVEVV 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +++L++ G +IR + I I R T GV I D++V +++ I EA Sbjct: 757 REDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEEREA 816 Query: 907 E 907 E Sbjct: 817 E 817 >gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307] gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307] Length = 859 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 363/914 (39%), Positives = 528/914 (57%), Gaps = 71/914 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + + + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MADPTGAGNPS--ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSV Sbjct: 59 YELGLTAERPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG Sbjct: 119 DNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGS 178 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE++DG +A+I +P I+ LM II GPDFPTG ILGR GI+ Sbjct: 179 AGIAVGMATNIPPHNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRE 238 Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 Y GRGSI +RGV+ IE DR+ +++TE+PYQ NKA+++E+IAELV +K++ Sbjct: 239 TYTGGRGSITMRGVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEG 298 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 IAD+RDESDR G R+VIEL+R A V+LN LY+ T LQ+ FS +AL +P L Sbjct: 299 IADIRDESDRDGMRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLK 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ F+ FR E + RRTKYLL KA +R H+L GL +A+ +LD ++++IR + + TAR+ Sbjct: 359 RMLEVFLDFRIETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQ 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ LSE+Q AIL+++L RLT L D IR Sbjct: 419 GLV--------------------------NDHGLSEIQADAILQMQLRRLTALEADKIRL 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I + DIL R R+L II++EL +K+ +TPRRT I++ +ED D I Sbjct: 453 EHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERHNTPRRTEILDLEGGLEDIDLIAN 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E VV ++ GY+KR+P+S + + RG +G++G + E+ V + H S+L FS Sbjct: 513 ERSVVLLTENGYLKRMPVSEFESTSRGTRGKAGTKSQGEEAVRLFISCNDHDSLLLFSDR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY +R+PI S A+G ++ +L + + E+IT+++ E ++ +V T G Sbjct: 573 GVVYSLPAYRVPIASRAAKGTPVVQLLPIPREEQITSLLAVSAFE---EDVQLVMLTTGG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713 ++R LS F I +G IA+ L+ D + V + +L+ + G + F I+ + Sbjct: 630 FIKRTPLSAFSNIRANGLIAINLEDADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVR ++L GD ++SM ++ AD Sbjct: 690 RPL-GRTARGVRAMALRDGDSLVSMDVLPAELADRIAAAGEASDG--------------- 733 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 E + ++L + G GKR FR+ R+G G+R Sbjct: 734 --------------ESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKF- 778 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + ALV + + ++++LVS++G ++R+ + I SRA GV + K +R+ Sbjct: 779 -RRDGDALVGLCVMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAE 837 Query: 894 VERI-RESEIVDEA 906 V + E+E DE+ Sbjct: 838 VVLVPPEAETDDES 851 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 21/258 (8%) Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + L+ E + E ++L T+ G R P+S R + G Sbjct: 488 RHNTPRRTEILDLEGGLEDID--LIANERSVVLLTENGYLKRMPVSEFES-TSRGTRGKA 544 Query: 726 GISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 G + V IS D + Y E Sbjct: 545 GTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLPIPRE 604 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I+ ++ ++ ++ GF KRT F SN G+ A ++ + +L Sbjct: 605 EQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAF--SNIRANGLIAINL---EDADSLR 659 Query: 843 AVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSV------ 894 V D +++ S G I R+ ++R R +GV + + +VS+ Sbjct: 660 WVRLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDGDSLVSMDVLPAE 719 Query: 895 --ERIRESEIVDEAESTE 910 +RI + + ES E Sbjct: 720 LADRIAAAGEASDGESEE 737 >gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001] gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010] gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011] gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001] gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010] gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011] Length = 838 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ +D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515] gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9515] Length = 863 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 340/917 (37%), Positives = 535/917 (58%), Gaps = 72/917 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S D E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDIVDSGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I NP ++ L E+I+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 IK + +GRGSI +RGV+ IE+ +++ +++TE+P+Q NKAA++E+IA+LV +K+ Sbjct: 241 IKETFKSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR + RRT +LL KA +R H++ GL +A+ +D ++ +IR + + + Sbjct: 361 SLRKMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L + LS +Q AIL+++L RLT L D Sbjct: 421 AREQLQK--------------------------DHELSVIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I++E + L +I + +IL + R+ II +EL + + +PR+T I+ ++D D Sbjct: 455 IKSEHDELTRKITDYKNILQDKDRINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + + RG +G++G +++D V + H ++L F Sbjct: 515 IANERSVVLLTSAGYLKRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+I+ + N+ Y++ T Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSIVSVESFD---NDRYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ + G + F + Sbjct: 632 KAGFIKRTPLSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDN 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L GD+++SM ++ Sbjct: 692 NELRPL-GRTARGVKSMNLKDGDKLVSMDVL----------------------------- 721 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + L + + N ++E + K ++L S G GKR FR+ R+G G+RA Sbjct: 722 -TSDLVDQLASLENENDEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAI 780 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + +LV + + + +++I V+++G ++R ++I SRA GV + + Sbjct: 781 KF--RIKDDSLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGVRLQRLDDGDH 838 Query: 891 VVSVERIRESEIVDEAE 907 + V + +I D + Sbjct: 839 LSEVVLVPHEQIDDSDQ 855 >gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] Length = 836 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 331/901 (36%), Positives = 520/901 (57%), Gaps = 97/901 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I D+M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + Sbjct: 3 EGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQ W++R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ K+TVD N+D + EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A + N DI +D LME I+ PDFPTG +I G G++ A+ TGRG +VIR Sbjct: 183 PHNLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +H E+ R+ IVVTE+PYQVN M E+ + LV+E ++ +AD+ D++ + G R+V Sbjct: 243 AKAHFEEV-NGRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELK+ A +V+LN L+++T+LQS FSVN +AL +P++ L ++ FV R +VV R Sbjct: 302 YELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIYHFVEHRHDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KA++R H+L G + + + + IIRF P+ Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E+Q AIL L+L R+ L + E L +I + Sbjct: 406 -------------DLMTEFELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIIDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K + RR+ I D+ ED I + +V+T+S+ GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR ++ Y+ Q RGG G+ RD+DF+ LFI + H +LFF+ G + +V+ +P Sbjct: 513 KRTSVNEYKTQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +G+A+ N++++ + + ++ + ++ N+ YV+ ATK G +++ L + Sbjct: 573 GGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G +A+ + DE+L + + I+L K G+ +RFP +R GR+ GVRG Sbjct: 633 RPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRAV-GRSGSGVRG 691 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ISL D+VI M + + Sbjct: 692 ISLDSDKDEVIGMIAIENPL---------------------------------------- 711 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838 E+ +L VSE G+GKRT + +RI+NR GKG++ +++ + Sbjct: 712 -----------EETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITE--KT 758 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA+ V + D +++++ G IR+PV+ +R+ RAT+GV + + ++ + +V ++ Sbjct: 759 GNLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVAKVM 818 Query: 899 E 899 + Sbjct: 819 K 819 >gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] Length = 820 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 360/892 (40%), Positives = 537/892 (60%), Gaps = 83/892 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF ++G + + KCARI Sbjct: 8 ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL RMAQD+S+R L EGQGNFGS+DGD PAA RYTE R+ + Sbjct: 68 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TVDFRPNYD S +EP+VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + + +ID+PD+ +D L+ II GPDFPTG I G+ +AY GRG++ +RG IE+ Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + IV+ EIP+ +NK++++EKIA LV E++I IADLRDESDR+G RVVIELK+G Sbjct: 248 RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKGV 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++I+N LY++T L++ F +NM+A+ +P+ T+ L F+ R EV+VRRT++ LN Sbjct: 308 IPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFELN 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA R H+L+GL A+ ++DEVV +IR S P A+ L++R Sbjct: 368 KAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER------------------ 409 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q ++IL++RL RLTGL R+ + E++ L +I IL L Sbjct: 410 --------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILW 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 G+I+ E+ +K+ TPRRT ++ ++E ED I +D+V+T+S GY+KR L++Y+ Sbjct: 462 GVIRDEVTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQ 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKG +G+ ++DFV + + H +L F++ G +++ KV ++P GS A+G Sbjct: 522 QQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTH 581 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + NI+ L + E +TTI+ E +N + +FAT+ G V+R+ S + + R+G +A+ Sbjct: 582 IANIVPLEKEEWVTTILTVREFS---DNKFFLFATRKGMVKRSSASYYARSRRTGLLAVG 638 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE++ V+ T + I+L T G +RF +R GR + GV+GI+L GD V++ Sbjct: 639 LREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNM-GRGAAGVKGIALRPGDSVVA 697 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 I+ Sbjct: 698 CLILQEKQDTPA------------------------------------------------ 709 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 I+TVS G+GKRTS +R+ R GKGI V++ + G ++ PV+D++ ++L++ Sbjct: 710 --IMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQ--KTGLVIGAKPVSDDNALVLLT 765 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +IR+ V+E+R A RAT GV + VV + + + ++T Sbjct: 766 STNKIIRMSVDEVRSAGRATMGVRLVKLDDGAYVVGFDTVDGTVDDSCDDAT 817 >gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684] gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684] Length = 883 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 382/907 (42%), Positives = 545/907 (60%), Gaps = 89/907 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D+ I ++ +EM+++YL YA++VI+GRA+PD+RDGLKPVHRR+LF M +MGV+ Sbjct: 4 TDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMGVQP 63 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ K +RI GEVMGKYHPHG+A+IYD L RMAQD+S+R LL++GQGNFGSVD DP AA Sbjct: 64 NRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDPAAA 123 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL + A +L D+ DTVDF PNYDG QEP+VL AR+PN+LVNG GIAVGMA Sbjct: 124 MRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAVGMA 183 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E + +A I+NP+ID+D LM+ IRGPDFPTG +ILG GI++AYATGRG Sbjct: 184 TNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILGVGGIRDAYATGRGR 243 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNK---AAMLEKIAELVREKRIVDIADLRDESD 304 + ++ +HIE S +E IVVTE+PYQV K +++KIA+LV EK+I +I DLRDESD Sbjct: 244 VRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLRDESD 303 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R VIELKR V+LN+LY++T +Q+ F VNMVAL P+ +L ++ +V Sbjct: 304 RHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDNVPKTLSLREVIGRYVDH 363 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + EV+VRRTKY L +A DRAH+L GL IA AN+DEV+ IIR S + E AR L+ R Sbjct: 364 QREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVNR---- 419 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LSE Q AIL++ L RLT L D +R E L I Sbjct: 420 ----------------------FELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERI 457 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E +IL R + IIK+EL + D RRT I +++ ED I + MV+T++ Sbjct: 458 RELREILGDEDRQMAIIKEELQEISDAYGNERRTAISYAEGEIDIEDLIADQQMVITITK 517 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+K +PL+ YR QRRGG G +G+ M+D D++ LF+ STH +LFF++ G VY+ KV+ Sbjct: 518 TGYIKSLPLATYRQQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVY 577 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 LP S A+G+AL+NIL L +GER+ +++ + Y++FAT+ G V++ +L Sbjct: 578 ELPEASRTAKGRALVNILPLREGERVQSVLSTRDFS---EAPYLLFATRKGTVKKTELQA 634 Query: 665 FIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + G IA+K+ DE+++V + +++++ ++ G VRF R GR++ G Sbjct: 635 YNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSM-GRDTSG 693 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ + +VI+M I Sbjct: 694 VRGMDVGDSGEVIAMDIARDD--------------------------------------- 714 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 Q +L ++E GFGKRT ++R + R KG+R +++ G L Sbjct: 715 --------------QDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEA--RGGLAG 758 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V ++ +++ +S G + R V I RA++GV + + +D+ V ++ + ES+ Sbjct: 759 ALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVESDTA 818 Query: 904 DEAESTE 910 + E+ E Sbjct: 819 EADEALE 825 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 91/269 (33%), Gaps = 14/269 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ + G VK+ L Y + G + +RD+D + + V V+ Sbjct: 612 FSEAPYLLFATRKGTVKKTELQAYNTPIKAD-GIIAIKIRDDDELVAVRRVDEGDEVIIV 670 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + G + + + + ++ ++ T Sbjct: 671 SRAGLTVRFSEQDARSMGRDTSGVRGM---------DVGDSGEVIAMDIARDDQDLLVIT 721 Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++ ++ + G ++L + + +++ ++ G R Sbjct: 722 ENGFGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGALVVREHQELVFISQNGMVQRTG 781 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + I GR S GV+ +++ + D V ++A+V+ +D + ++ + Sbjct: 782 VRGIN-RYGRASQGVKVMNVREDDSVRAIALVVESDTAEADEALELELGADGVEGGGVVA 840 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798 + D + + + Q E Sbjct: 841 VDADGAGADGGAPASDASDAPQGDDGDEP 869 >gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928] gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928] Length = 875 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 359/906 (39%), Positives = 522/906 (57%), Gaps = 93/906 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G Sbjct: 2 DETPQGDRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 K Y KCAR+ GEVMG YHPHG++ IYD L R+AQ WSLR++L++G GNFGS DP AA Sbjct: 62 EKGYYKCARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTEC++ A ++ D+ +DTVDFRPNYDG EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTECKMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP+HNL EV DG + NP+ + L+ E I+GPDFPTGA+I+GR GI++AY T Sbjct: 182 TNIPSHNLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIVGRRGIEDAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +R V + E+ R +VVTE+PYQVN + KIAELV++ ++ IAD+RDE Sbjct: 242 GRGSITMRAVVNTEEI-NGRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDES 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P +L ++ +V Sbjct: 301 SSRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDDVPRTLSLDAFIRHWV 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRT++ L KA++RAH+LVGL A+ +DEVV +IR SP + AR L++ Sbjct: 361 THQIDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIE--- 417 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + E+Q AILE++L RL L R I E N L Sbjct: 418 -----------------------LLTIDEIQANAILEMQLRRLAALERQRIEAEHNELMA 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + IL S R I+ +EL ++ D+ RR+++V DM ED I ED+VVT+ Sbjct: 455 KIADYTAILESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMSIEDLIPEEDVVVTI 514 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY +R +YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K Sbjct: 515 TRGGYTRRTRTDLYRSQKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAK 574 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 LP + ARG+ + N+L+ E+I ++ + E Y+V ATK+G +++ L Sbjct: 575 AHELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYE---QTPYLVLATKNGLIKKTPL 631 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 D+ +G IA+ L DE+++ E + E+D+LL +K Q +RF + +R GR Sbjct: 632 KDYDSPRSAGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPM-GRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ + D+++SM +V Sbjct: 691 TSGVIGMRFREDDELLSMDVVRP------------------------------------- 713 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + F+ T + G+GKRT+ F + R G G+ A ++E G Sbjct: 714 ----------------DTFLFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKT--VDERGG 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V++ D+++ ++ G +IR V+E+R SR T GV + + K + V+++ R + Sbjct: 756 LVGAAVVDEGDEVMAITLSGGVIRTRVSEVRPTSRDTMGVRVINLGKGDTVLAIARNGDP 815 Query: 901 EIVDEA 906 V++ Sbjct: 816 GEVEDE 821 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 13/270 (4%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G +K+ PL Y + R G + +R++D + +VS +L Sbjct: 611 YEQTPYLVLATKNGLIKKTPLKDYDSPRSAG--VIAINLREDDELIAAELVSPEDDLLLV 668 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S + + P R + + + + + + ++ + ++ AT Sbjct: 669 SKQAQGLRFTATDEAL-RPMGRATSGVIGMRFREDDELLSMDVVR------PDTFLFTAT 721 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 G +R + F R G + + DE + + ++++ T G +R Sbjct: 722 SGGYGKRTAVEMFPLRGRGGLGVIAAKTVDERGGLVGAAVVDEGDEVMAITLSGGVIRTR 781 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S +R R+++GVR I+L KGD V+++A DE + Sbjct: 782 VSEVRP-TSRDTMGVRVINLGKGDTVLAIARNGDPGEVEDELGEEAGAPAEAAGADVVAE 840 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQF 799 ++S + +E + Sbjct: 841 ARENGAVVEASEGSEVIDESEGSDESDGSE 870 >gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435] gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207] gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475] gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435] gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207] Length = 838 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY T RGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] Length = 878 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 367/907 (40%), Positives = 544/907 (59%), Gaps = 94/907 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G Sbjct: 3 ENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLGNT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD PA Sbjct: 63 SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL K ++DD+ KDTVD N+D + EP V+ R PN+LVNGG GIAVGM Sbjct: 123 AMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTHNLGEV+DGC A IDNP+ID + LM+ I PDFPTGA I G G+K+AY TGRG Sbjct: 183 ATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIYGIQGVKDAYETGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE ++IVVTEIPY VNK ++E IAELV+E +I I+++ DE+ RQ Sbjct: 243 RVVMRAKAEIESDES-HDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDETGRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-------PERFTLIGILK 359 G R+V+++KR A+A VILN+L++ T+LQS FSVN +AL K P+ +L + Sbjct: 302 GMRIVVDVKRDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRECIS 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R EV +RRTK+ L KA++RAH+L GL IA N+DEVV IIR S P A+ L + Sbjct: 362 YFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQANLEK 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R L +Q++AI+++RL++LTGL D + E Sbjct: 422 R--------------------------FELDNLQSKAIVDMRLSQLTGLRMDQLHAEYED 455 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I E +L + ++K EL +VK + RRTRI+ + ED + +V Sbjct: 456 LMKLIDELQSVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFNAEDFYPNDPVV 515 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVSHLGY+KR PLS +R Q RGG G G RD+DF ++ + H +++FF+ G Y Sbjct: 516 ITVSHLGYIKRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCY 575 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDESSWNNLYVVFATKHG 655 + +P G ++G+A+ N+L+++ + + + EDE N+ YVVFATK+G Sbjct: 576 WLHCYDIPEGDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNG 635 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L ++ + +G IA+ + DE++ V N+++L + G+ VRF AIR Sbjct: 636 TVKKTNLKEYSRPRANGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRS 695 Query: 716 FAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR S GVRG+ + +GD V+ M +V +A+ Sbjct: 696 M-GRVSTGVRGMRIDDEGDAVVGMIVVNNAET---------------------------- 726 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + ++ VSE+G+GKR+ D+R +NR GKG++ +++ Sbjct: 727 -----------------------ETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITE 763 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVS 893 + G LVA+ V D + +++++ G +IR+ V E+R+ RAT+GV + + K++ + S Sbjct: 764 --KTGRLVAIKNVTDENDLMIINKSGIVIRLAVAEVRVMGRATQGVRLINLARKNDTIAS 821 Query: 894 VERIRES 900 V ++ S Sbjct: 822 VCKVMSS 828 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 149/437 (34%), Gaps = 29/437 (6%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R L + D ++ L + + ++ +++ A+ +R+ D + Sbjct: 445 RMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFN 504 Query: 432 DLIDDSSYT-------IGSDGTMYLSE--VQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +G LS+ Q R + + A + Sbjct: 505 AEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQT 564 Query: 483 EIK-------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 + L + + ++ + + +++ V Sbjct: 565 MMFFTKKGRCYWLHCYDIPEGDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVN 624 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 VV + G VK+ L Y R G + + + D V D+ + + + ++ + Sbjct: 625 SHYVVFATKNGTVKKTNLKEYSRPRANG--VIAINIVEGDEVVDVRLTNGNNELILANRN 682 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G + + R + + ++ M + V+ ++ G Sbjct: 683 GRAVR---FDEQAIRSMGRVSTGVRGMRIDDEGDAVVGMIVVNNA---ETETVMVVSEEG 736 Query: 656 NVRRNKLSDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISA 712 +R+ ++D+ + NR G M + + +++++ T END+++ K G +R ++ Sbjct: 737 YGKRSDVADYRKTNRGGKGVKTMSITEKTGRLVAIKNVTDENDLMIINKSGIVIRLAVAE 796 Query: 713 IRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RV GR + GVR I+L K D + S+ V+ ++ E + S ++ D Sbjct: 797 VRVM-GRATQGVRLINLARKNDTIASVCKVMSSELAAAEEEEKQEAESDGAQVDLSDNAS 855 Query: 772 ITSLKNDSSVEGNISEE 788 S ++ + +E Sbjct: 856 EASSESRDADSSAGDDE 872 >gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] Length = 826 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 357/896 (39%), Positives = 534/896 (59%), Gaps = 86/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL +RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ +++ DF+ L STH ++LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEGA---DDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ Sbjct: 691 RGINLRPHDYVVGSGVL------------------------------------------- 707 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +SEKG+GKRTS+ ++ + R GKGI+ ++++ N G L V Sbjct: 708 ----------GSNDQVLVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +N + I++++ G +IR ++ R+T GV + +V S+ + Sbjct: 756 IVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQVASLTIVPTE 811 >gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] Length = 813 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 365/896 (40%), Positives = 554/896 (61%), Gaps = 86/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE K I V + +M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A + NP+I + L EII+GPDFPTGA ILG++GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A+A+++LN LY+ T L++ F + +AL P+ L ++K ++ ++ VV Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L+KA+ R H++ GL IA+ N+DE+++IIR S + + ++ +R Sbjct: 363 RRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+++Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 414 -----------------FGLTDLQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L+G+I++E+L +K++ RRT+IV + + E+ I +ED++++++H GY+K Sbjct: 457 ILNDEEKLIGVIEEEILEIKEKFADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY + +P Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q+RG+A+INI+SL E+IT IM E +N +VF T+ G +++ F I Sbjct: 577 SRQSRGQAIINIISLATNEKITDIMELSELS---DNSQLVFQTEKGKIKKTDAQLFTNIQ 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ L+ D ++S+ DI++TT+ G ++F S IR GRN+ GVR I L Sbjct: 634 RNGIIAISLEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSM-GRNARGVRAIRL 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +K D V+SM IV Sbjct: 693 SKDDNVVSMNIVED---------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++L V+ GFGK+TS +F NR GKG+R +++ + G +VA P N Sbjct: 707 -------EVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTGNVVATLPANL 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 +D I++VS KG +IR+ +I R T GV + + ++ +VSV + E D Sbjct: 758 DDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEENSED 813 >gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109] gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109] Length = 874 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 360/919 (39%), Positives = 531/919 (57%), Gaps = 76/919 (8%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 MT+ + + + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MTDSVGPVGGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG A+I NP+I L+++I GPDFPTG ILGR G Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y GRGS+ +RGV++IE DR+ +++TE+PYQ NKAA++E+IAELV +K+ Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L R LS++Q AIL+++L RLT L D Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ GII+ EL +++ T RRT I++ + D D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQERYPTRRRTEILDLGGGLSDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + ED V + H +++ F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E ITT++P E ++ +V T Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFS---DDTDLVMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ +K G + F +S Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L GD ++SM ++ AD Sbjct: 692 EELRPL-GRTARGVRSMNLRDGDALVSMDVLPVELADQVAA------------------- 731 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 S E ++ + ++L S G GKR FR+ R+G G+RA Sbjct: 732 ---------------SAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 776 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 777 KF--RTDTDELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDR 834 Query: 891 VVSVERIRESEIVDEAEST 909 ++ V + D A+ T Sbjct: 835 LLKVVLVPPEAEDDPADDT 853 Score = 93.3 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 101/302 (33%), Gaps = 27/302 (8%) Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 + L + +T I + + ++ + ++ G + + R+ LD Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQL----QERYPTRRRTEI----LDLG 506 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738 + ++ E ++L T+ G R P+S R + G G D V IS Sbjct: 507 GGLSDIDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEDAVKLFISC 565 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 D + Y + E I+ + Sbjct: 566 NDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFSDDT 625 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++ ++ GF KRT F SN G+ A ++ + AL V D +++ S Sbjct: 626 DLVMLTRGGFIKRTRLSAF--SNIRSNGLIAINLEEG---DALTWVRLAVPGDSVLIGSK 680 Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER--------IRESEIVDEAES 908 G I R+ E+R R +GV + + +VS++ + S +E + Sbjct: 681 AGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADQVAASAEDEEDAA 740 Query: 909 TE 910 +E Sbjct: 741 SE 742 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 20/258 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V ++ G++KR LS + R G + + + D +T + + SVL Sbjct: 621 FSDDTDLVMLTRGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALTWVRLAVPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-----------PED 639 S G ++ L ARG +N L ++P E+ Sbjct: 679 SKAGMTIHFRLSDEELRPLGRTARGVRSMN-LRDGDALVSMDVLPVELADQVAASAEDEE 737 Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDI 696 +++ +V+ A+ G +R ++ F R+G AMK + DE++ + ++ Sbjct: 738 DAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDELVGLSVLGAGEEL 797 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 LL ++ G VR AI R + GVR L KGD+++ + +V D Sbjct: 798 LLVSEKGVIVRTSADAI-PQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDPADDTLND 856 Query: 757 HMSAQRRLISGDTEEITS 774 S+ + + + S Sbjct: 857 SESSDTETTNTENDAQDS 874 >gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83] gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83] Length = 859 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 351/896 (39%), Positives = 543/896 (60%), Gaps = 88/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 2 TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA R Sbjct: 62 PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG + Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR + IE+ + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EV Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+ Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665 G+ A+G+A+ N+L+++ +++ + D+ N+ Y++F TK G +++ L F Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+ Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693 Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 G++L D+V+ M + H + Sbjct: 694 GMTLDDDGQDEVVGMISIKHPE-------------------------------------- 715 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 + V D + +++++ G IRV V ++ I RAT+GV + +K + + SV + Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816 Score = 86.0 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 19/238 (7%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730 + +D+ DE++S+ +++ RF +S I+ R G+ L Sbjct: 384 IAVDNIDEVISIIRSSKD---AAEAMSRLIERFDLSDIQARSIVDMRLRALTGLERDKLR 440 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + I MA + H +A +R M+ + ++ + +E S + E Sbjct: 441 AEFEEI-MASINHLEALLADRALLMELVKSELL----EIKEKYGDTRKSEIIYASEEFNP 495 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ + I+T+S G+ KRT +FR R G G + +D + + + + + + + Sbjct: 496 EDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSA---SMH 552 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 I+L + KG + V EI ++ KG I + D++V + RI+ E Sbjct: 553 ATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKE 610 >gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus] Length = 860 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 374/900 (41%), Positives = 548/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V + D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE + ++ +V+ E+PYQVNKA ++E IA L ++K+I IA++RDESDR G RVV Sbjct: 246 AKHHIE-SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L + I E IL Sbjct: 414 ---------------FGLSSIQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L IIK+EL +K++ TPR+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIKEELNEIKEKFSTPRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ + + +VF T++G ++R L++F I + Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTPDFD---ESKSLVFFTRNGVIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + Q I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDTDEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ + + Sbjct: 695 IDTDIVVDADVIDNEE-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ A +S + G +V V+D Sbjct: 711 --------QEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV VN IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2] gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2] Length = 815 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 368/888 (41%), Positives = 533/888 (60%), Gaps = 86/888 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M +G N+ Y K AR+ Sbjct: 5 ISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMARL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 L D+ K TVDFRPNYD + QEP VL + PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 125 CSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGCV ++DNP ++ +M ++GPDFPTG ++ G G+ +AY TGRGSI IRGV IE+ Sbjct: 185 IDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGGQGLYDAYTTGRGSIKIRGVVEIEE 244 Query: 259 TSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 T +E IV+ EIPY +NK+ ++EKIA LV EK+I +ADLRDESDR+G R+V++LKRG Sbjct: 245 TGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKRG 304 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A AD+I+N LY+YT L++ F +NM+A+ G +P L +L F+ R EVV+RRTK+ L Sbjct: 305 AIADIIINALYKYTPLETSFGINMMAVVGKRPMLLNLKSVLDYFLDHRREVVIRRTKFDL 364 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +K R H+L GL IA+ N+DEVV++IR S +P+ A+ LM R Sbjct: 365 DKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMAR----------------- 407 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE+Q +AIL++RL +LTGL D + EL L +I+ IL++ L Sbjct: 408 ---------FSLSEIQAKAILDMRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVL 458 Query: 498 LGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +I+ EL +K+ TPRR+ ++ ++ ED I E+ VVT+S GY+KR PLS Y Sbjct: 459 KSVIRDELKEIKENYSTPRRSELLTANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSNY 518 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 AQRRGGKG SGV D DF+ + + H ++ F++LG ++K K ++P GS A+G Sbjct: 519 TAQRRGGKGISGVQTGDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGG 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+L L++ E ITT + E + ++ + +F TK G ++R+ + + +G A+ Sbjct: 579 HVANLLPLDKDECITTALSLREFD---DDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRAV 635 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V + D +L T+ G +RF I+ R GR + GV+G++L D+V+ Sbjct: 636 NLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPL-GRTTAGVKGVALRGDDEVV 694 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + + + D Sbjct: 695 ACVVTGDPERDQ------------------------------------------------ 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +LTVS GFGKRT +R +R GKGI ++ N+ G +V VN++D +IL+ Sbjct: 707 ---LLTVSAGGFGKRTGIDQYRQQSRGGKGILNMRLT--NKTGKVVGARMVNESDDVILL 761 Query: 857 SDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +IR+ V+E+ RAT+GV + + V+ E + E E Sbjct: 762 TSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEE 809 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 86/221 (38%), Gaps = 12/221 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + ++ G +KR + +Y R G V +RD D + + + + Sbjct: 601 FDDDRFFLFLTKKGMIKRSSIGLYGNCRSTG--IRAVNLRDGDELMMVREIEPDVDCILV 658 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + + P R A + ++L + + + + ++ + Sbjct: 659 TRDGSAIR---FNINDARPLGRTTAGVKGVALRGDDEVVACVVTGD----PERDQLLTVS 711 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 G +R + + Q +R GK + + +++ + +D++L T + +R Sbjct: 712 AGGFGKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGARMVNESDDVILLTSANKIIRMS 771 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 +S + GR + GVR + + + VI +V+ + + + Sbjct: 772 VSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEELKD 812 >gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] Length = 884 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 359/894 (40%), Positives = 544/894 (60%), Gaps = 86/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + V N+ Sbjct: 2 QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K++K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA R Sbjct: 62 KHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE +L+K + +L DL KDTVDF+ N+D S EP V+ + P +LVNG GIAVGMATN Sbjct: 122 YTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E +D VA IDN +I +D LM+ I PDFPTG +I G G+++A+ TGRG IV Sbjct: 182 MAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + E+ +R I+VTEIPYQVNKA M+ + AELV++++I I ++RDESDRQG R Sbjct: 242 LRAKINFEEVG-NRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V ELK A +V+LN LY+YTSLQ+ FSVN +AL +PE+ L I+ FV R EVV Sbjct: 301 IVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +RRT++ L KA++RAH+L G +LD+ + IIR S NP A+ LM+ Sbjct: 361 IRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE------ 414 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +AIL+LRLARLTG+ D IR E + + I++ Sbjct: 415 --------------------FDLSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRD 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL++ SR IIK EL+ +K++ RR+ I +M ED I E +V+T+SH G Sbjct: 455 FEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G + +V+ + Sbjct: 515 YIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEI 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664 P GS ++G+A+ N++++ ++I + + D N + VV TK+G +++ L Sbjct: 575 PEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEA 634 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+++ D++L + +++I++ TK G+C+RFP R GR S+GV Sbjct: 635 YSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARAV-GRGSIGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGISL D+VI M +V + Sbjct: 694 RGISLEDDDEVIGMIVVNDVE--------------------------------------- 714 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 715 ------------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGNLIAI 760 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V D D +++++ G IR+ +NE+R+ R T+GV + + ++ + ++ ++ Sbjct: 761 QNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIAKVE 814 Score = 89.1 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 18/212 (8%) Query: 701 KLGQCVRFPISAIRV---FAGRNSVGVRGISLAKGDQVISM-AIVLHADADYDERICYMK 756 K G F +S ++ R + + G+ L D++ + +++ D+++ + Sbjct: 408 KDGLMKEFDLSDLQAQAILDLRLAR-LTGMEL---DKIRAEYDEIMNLIRDFEDILANES 463 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 + + +E + S ++ + E ++L E+ +LT+S G+ KRTS + Sbjct: 464 RRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAGYIKRTSLSE 523 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASR 875 +++ R G G RA + + +VA N Q +L ++KG + V EI S+ Sbjct: 524 YKVQTRGGVGNRAATTRDEDFLEYIVAAT----NHQYMLFFTEKGKCFWLRVFEIPEGSK 579 Query: 876 ATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +KG + + D+++ IR +++ D Sbjct: 580 ISKGRAVQNLINIEPDDKIK--AYIRTNDLKD 609 >gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101] Length = 846 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 357/883 (40%), Positives = 526/883 (59%), Gaps = 67/883 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143 YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RLQ LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 +D+ +TVDF N+DGS QEP V+ +R P +L+NG GIAVGMATNIP HNL E++DG + Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT---- 259 A+I+NP+++ LM +I GPDFPTG ILGR+GI+ Y TGRGS+ +RGV+ IE Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DR+ +++TE+PYQ NKAA++E+IAELV +K++ IAD+RDESDR G R+VIEL+R A Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + RRT+YLL K Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +R H+L+GL IA+ NLD ++ +IR + + TAR +L+++ Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQ------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSE+Q AIL+++L RLT L D IR E L +I + DIL+ + R+L Sbjct: 402 -------FGLSEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVLA 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I +EL ++ D+PRRT I++ +ED D I E VV ++ GY+KR+P+S + A Sbjct: 455 LITEELGVLRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RG +G++G + E+ V + H S+L FS G VY +R+P S A+G ++ Sbjct: 515 SRGTRGKAGTRSQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 +L + + E+IT+++ E + +V T G ++R +LS F I +G IA+ L+ Sbjct: 575 QLLPIPREEQITSLLAVSEFA---EDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLE 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737 D + V + +L+ ++ G + F +S +R GR + GVR ++L GDQ++S Sbjct: 632 EGDALTWVRLAQPGDSLLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ AD E SS E+ + + Sbjct: 691 MDVLPVELADRVE----------------------------SSSAAADEEDTEEVPPSEG 722 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++L S G GKR FR+ R+G G+R + LV + + ++++LVS Sbjct: 723 PWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKF--RRDGDVLVGLKVLGAGEELLLVS 780 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +KG ++R+ + + SRA GV + +R+ V + + Sbjct: 781 EKGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVVLVPPA 823 >gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] Length = 865 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 356/927 (38%), Positives = 523/927 (56%), Gaps = 103/927 (11%) Query: 1 MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 MT+ E+ + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR Sbjct: 1 MTDENTPVTPLEDVDAAAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M G + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ G Sbjct: 61 VLYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231 +NG GIAVGMATNIP HNL EV G ++NP+ + L+ + I+GPDFPTGA++ Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALV 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDG 299 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 +I IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 +L ++ +VA + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S Sbjct: 360 TLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 E AR LM + + E+Q AILE++L RL L R Sbjct: 420 EIARGGLM--------------------------DLLEIDEIQANAILEMQLRRLAALER 453 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I E + L +I E +IL+S R GI+ QEL ++ ++ R+T+++ DM E Sbjct: 454 QKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIE 513 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVTV+ GY+KR YRAQ+RGGKG G ++++D V F+ +TH +L Sbjct: 514 DLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLL 573 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP ARG+ + N+L+ E I I + E+ Y+V Sbjct: 574 FFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVL 630 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705 ATK G V++ L D+ G IA+ L DE++ E + ++D+LL ++ Q Sbjct: 631 ATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQS 690 Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 IRFTATDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------ 731 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 F+ T ++ G+ KRT+ ++R+ R Sbjct: 732 -----------------------------------FVFTATDGGYAKRTAVDEYRVQGRG 756 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR R T GV + Sbjct: 757 GLGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLI 814 Query: 884 STAKDERVVSVERIRESEIVDEAESTE 910 + K + VV + R E+ E + Sbjct: 815 NLGKRDAVVGIARNAEAGREAEEVDGD 841 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ L Y + R GG + +++ +L + +L S Sbjct: 626 PYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLIS 685 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S +G+ + ++ +V AT Sbjct: 686 RKAQSIRFTATD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 738 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 739 GGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 798 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + IR GR+++GV+ I+L K D V+ +A A + +E + T+ Sbjct: 799 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVVVDETADGAAPAGTD 857 Query: 771 EITSLKND 778 E + + Sbjct: 858 EGEAPSAE 865 >gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] Length = 873 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 396/851 (46%), Positives = 545/851 (64%), Gaps = 19/851 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D YL+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK L+ Y AQRRGGKG++ M+DEDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E E + +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVKEYE---ADKFVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ NDI+L +K G+ VRF +R GR + GVR Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ IV H D D + + + + E N Sbjct: 722 GIKLAESDNVVSL-IVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNG 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S ++ ++F + ++ G RT + R+ +G+ ++ + +V + Sbjct: 781 SVVGAVQVLEGDEF-MMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTTEDEK---VVGLQ 836 Query: 846 PVN--DNDQII 854 ++ D D II Sbjct: 837 RIDEPDEDDII 847 Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 73/423 (17%), Positives = 153/423 (36%), Gaps = 29/423 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +++ ARR + + + Sbjct: 469 EHEKILDEYKTLLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D++DLI+ D Y +V T + R + R + + L + Sbjct: 527 IDLEDLINQEDVVVTLSHEGYVKY--QVLTDYEAQRRGGKGKAATRMKDEDFIERLLVAN 584 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 + S + +K L + T R IV L E+E + Sbjct: 585 THDTILCFSTRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVKEYEAD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 V + G VK+ PL+ + R G V +RDED + + I + ++ FS G Sbjct: 643 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDEDTLIGVDITDGNNDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A G I ++ N+ V+ T++G Sbjct: 701 KVVRFNEGQVRAMGRTAAGVRGI---------KLAESDNVVSLIVPHNDGDVLTVTENGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L ++ +R+ + + + ++ + ++ ++ T G VR ++ + Sbjct: 752 GKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I + ++V+ + + D D + + + + + Sbjct: 812 -SRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDIIEDAEITEVENTETPAADSEQGDS 870 Query: 774 SLK 776 S + Sbjct: 871 SEE 873 >gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107] gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107] Length = 876 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 359/920 (39%), Positives = 541/920 (58%), Gaps = 66/920 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + ++ I + +EM SY+ YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVD+ N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG +A+I+NP+I LM +I GPDFPTG ILGRTG Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y +GRGS+ +RGV+ +E DR+ +++T +PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L R LS VQ AIL+++L RLT L D Sbjct: 421 ARTQLQDRH--------------------------GLSAVQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+LGII++EL +++ PRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRERHSVPRRTEILDLAGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ E ++ ++ T Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ +K G + F ++ Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L KGD ++SM ++ AD Sbjct: 692 GELRPL-GRTARGVRSMNLRKGDSLVSMDVLPAELAD----------------------- 727 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + +D + + + + ++L S G GKR FR+ R+G G+RA Sbjct: 728 QIAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 787 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 788 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 845 Query: 891 VVSVERI-RESEIVDEAEST 909 + V + E+E D+ E++ Sbjct: 846 LADVVLVPPEAETDDDNEAS 865 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 93/259 (35%), Gaps = 29/259 (11%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + D D +T + + SVL Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEDGDALTWVRLSIPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERIT------------------- 631 S G ++ L ARG +N+ + + Sbjct: 679 SKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADDVGD 738 Query: 632 --TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILS 686 E + +V+ A+ G +R ++ F R+G AMK + DE++ Sbjct: 739 GDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVG 798 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 + ++LL ++ G VR AI R + GVR L KGD++ + +V Sbjct: 799 LRVLGAGEELLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAE 857 Query: 747 DYDERICYMKHMSAQRRLI 765 D+ + S Sbjct: 858 TDDDNEASAEESSEPSAEG 876 >gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977] gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium abscessus] Length = 839 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 339/917 (36%), Positives = 509/917 (55%), Gaps = 93/917 (10%) Query: 1 MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 MT+ + ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ Sbjct: 1 MTDTTLPPGGDDAVDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 MYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 DP AA RYTE RL A +L ++ ++TVDF PNYDG EP VL +R+PN+L NG Sbjct: 121 PGNDPAAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRT 235 GGIAVGMATN+P HNL E+ + +DN + L A+ E I GPDFPT +I+G Sbjct: 181 GGIAVGMATNMPPHNLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGTQ 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GI +AY TGRGSI +RGV+ IE+ S R +V+TE+PYQVN + IAE VR+ +I Sbjct: 241 GIHDAYTTGRGSIRMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAG 300 Query: 296 IADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I+++ D+ SDR G R+V+ LKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 ISNIEDQSSDRVGLRIVVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRL 360 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 +++ +V + +V++RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 DQLIRLYVNHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 420 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 L++ + + E+Q +AIL+++L RL L R I Sbjct: 421 TGLIE--------------------------LLDVDEIQAQAILDMQLRRLAALERQKII 454 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 ++L + EI + DIL+ R I+K EL + ++ RRTRI+ D+ DED I Sbjct: 455 DDLAKIEAEIADLEDILAKPERQRAIVKDELAEITEKYGDDRRTRIISADGDVADEDLIA 514 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 RED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 REDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTT 574 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VY+ K + LP + ARG+ + N+L+ ERI ++ E + Y+V ATK+ Sbjct: 575 KGRVYRAKAYDLPEAARTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATKN 631 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 G V+++KL++F G +A+ L DE++ C+ E+D+LL + GQ +RF + Sbjct: 632 GLVKKSKLTEFDSNRSGGLVAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEA 691 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D ++S+ +V Sbjct: 692 LRPM-GRATSGVQGMRFNGEDDLLSLNVVREGT--------------------------- 723 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 724 --------------------------YLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQY 757 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G+LV V++ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 758 DPR--RGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGRQTKGVRLMNLGEGDTLL 815 Query: 893 SVERIRESEIVDEAEST 909 ++ + D E Sbjct: 816 AIAHNADEGDADPDEDA 832 >gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311] gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311] Length = 892 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 366/920 (39%), Positives = 533/920 (57%), Gaps = 70/920 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPVGPGSGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL +R P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE++ G +A+I NP+I LM +I GPDFPTG ILGR+G Sbjct: 181 NGSAGIAVGMATNIPPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV+ IE DR+ +V+T +PYQ NKAAM+E+IAE+V +K+ Sbjct: 241 IRETYLTGRGSVTMRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G RVV+EL+R A V+LN LY+ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLEFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L +R LS VQ AIL+++L RLT L D Sbjct: 421 ARTQLQERH--------------------------GLSAVQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ GII+ EL ++D PRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRDRHAVPRRTEILDLAGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ E ++ ++ T Sbjct: 575 SDRGVSYAVPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G ++R +LS F I +G IA+ L+ D + V + +L+ ++ G + F +S Sbjct: 632 TGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L +GD ++SM ++ AD Sbjct: 692 NELRPL-GRTARGVRSMNLREGDSLVSMDVLPAELADQIAA------------------- 731 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 S E + + + + ++L S G GKR FR+ R+G G+RA Sbjct: 732 --------SVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 784 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDR 841 Query: 891 VVSVERI-RESEIVDEAEST 909 + V + E+E D+ ES Sbjct: 842 LADVVLVPPEAETDDDTESD 861 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 98/275 (35%), Gaps = 25/275 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ GY+KR LS + R G + + + D +T + + SVL Sbjct: 621 FNDDTDLLMLTTGGYIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILS---------LNQGERITTIMPFPEDES 641 S G ++ L ARG +N+ L ED+ Sbjct: 679 SRAGMTIHFRLSDNELRPLGRTARGVRSMNLREGDSLVSMDVLPAELADQIAASVDEDDE 738 Query: 642 SWNN--------LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETC 690 + +V+ A+ G +R ++ F R+G AMK + DE++ + Sbjct: 739 GSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVL 798 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 ++LL ++ G VR AI R + GVR L KGD++ + +V D+ Sbjct: 799 GAGEELLLVSEKGVIVRTGADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAETDDD 857 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 E+ + ++ S Sbjct: 858 TESDSAGEPNSNSAPDVVAEQAATPEDLSEPSAED 892 >gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463] Length = 827 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 355/896 (39%), Positives = 536/896 (59%), Gaps = 86/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVISIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SE G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ I++++ G +IR ++ R+T GV + + D +V S+ + Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811 >gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824] Length = 829 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 376/888 (42%), Positives = 545/888 (61%), Gaps = 88/888 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY Sbjct: 6 NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H + E++D V +IDNP +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I I+++RDESDR+G RVVI Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RR Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+ + Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AIL++RL RLTGL R+ I NE L EI+ IL Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N+++L E+I + + + + F TK+G ++R LS+F I G Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRSVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + + IL+ T G CVRF + +R GR + GV I Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V + Sbjct: 695 PKDYVIGATVVSN----------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 708 -----ENEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807 >gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605] gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506] gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605] Length = 838 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 342/913 (37%), Positives = 508/913 (55%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+ +IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY T RGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + +++ Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814 Query: 894 VERIRESEIVDEA 906 + R E D A Sbjct: 815 IARNAEESGDDNA 827 >gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4] gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4] Length = 842 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 344/917 (37%), Positives = 516/917 (56%), Gaps = 87/917 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ + MG YHPHG++AIYD L R+AQ W++R +++GQGNFGS Sbjct: 61 WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTEC++ A ++ D+ K+TVDF+PNYDG EPVVL +R PN+LVNG Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT +P HNL EV + +DNP + L A ME I+GPDFPT I+G G Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIVGDQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY+TGRGSI +RG + IE+ G+R IV+TE+PY+VN M+ IAE +R+ +I I Sbjct: 241 IKDAYSTGRGSIRMRGKTSIEE-EGNRTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLALN 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+VRRT+YLL++A RAH+L GL A+ LDEV+ +IR S E AR Sbjct: 360 HLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIARE 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 G + + + Q +AIL+++L RL L R I + Sbjct: 420 --------------------------GLKDLLEIDDDQAQAILDMQLRRLAALERQKIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L ++ +EI + DIL+ R I+ EL + ++ RRTRI+ D+ DED I R Sbjct: 454 QLAAIELEIADYKDILAKPERQRAIVGDELREIVEKYGDDRRTRIIPADGDVTDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTRTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRIKAYELPEANRTARGQHVANLLAFQPEERIAGVIRIKSY---QDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L D+ G IA+ L DE++ ++D+LL ++ GQ +RF + + Sbjct: 631 LVKKSRLEDYDSPRSGGLIAVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ GD ++SM++V +D ++ Sbjct: 691 RPM-GRATSGVMGMRFNDGDALLSMSVVRADTSDQEKY---------------------- 727 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L +E+G+ KRT+ ++ R GKG+ Sbjct: 728 -------------------------FLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFD 762 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V D++ ++ G +IR ++R A R TKGV + + A+ + +++ Sbjct: 763 P--KRGKLVGATIVELQDELYAITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLA 820 Query: 894 VERIRESEIVDEAESTE 910 + R + ++ E Sbjct: 821 IARNADEPDDEDKAEAE 837 >gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] Length = 871 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 356/930 (38%), Positives = 525/930 (56%), Gaps = 106/930 (11%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + EE + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVH Sbjct: 1 MADENSPVTPEEVPAVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ Sbjct: 61 RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDS 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 GNFGS DP AA RYTEC++ + ++ D+ ++TVDF+ NYDG QEP VL AR+PN Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV G +++P+ D L++ I+GPDFPTGA Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 +++GR GI++AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV+ Sbjct: 241 LVVGRNGIEDAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVK 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + +I IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F NM+AL Sbjct: 300 DGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P ++ ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSN 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E+Q AILE++L RL L Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I E + L +I + IL+S I+ +EL ++ D+ RR+++V DM Sbjct: 454 ERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFGDDRRSKLVPFEGDMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT+S GYVKR YR+Q+RGGKG G +R++D V F+ +TH Sbjct: 514 VEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP ARG+ + N+L+ E+I I+ + + Y+ Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYD---AAPYL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703 V ATK G V++ L D+ G IA+ L DE++ E + E+D+LL ++ Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISRKA 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 QSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT---------------- 733 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 F+ T ++ G+ KRT+ ++R+ Sbjct: 734 -------------------------------------FVFTATDGGYAKRTAVDEYRVQG 756 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R T GV Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814 Query: 882 IFSTAKDERVVSVERIRESE-IVDEAESTE 910 + + K + VV + R E+ +E + TE Sbjct: 815 LINLGKRDAVVGIARNAEAGREAEEVDGTE 844 >gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829] gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] Length = 945 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 364/897 (40%), Positives = 538/897 (59%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + + + K A Sbjct: 97 LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEVMGKYHPHG+++IYDA+ RMAQ++S+RL L++G GNFGS+DGDPPAA RYTE RL Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG GIAVGMATN+P HNL Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV +IDNPD ++ LM+++ GPDFPTG +I+G GI++AY TGRGSI IR H Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKVH 336 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E G R+++V+TEIPYQVNK + E+IA+ V EKRI I+D+RDES+R+G R+VI+L Sbjct: 337 VENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVIDL 396 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K GA V+LN LY+ T LQ F V +AL P TL ++ ++ ++++V RRT+ Sbjct: 397 KSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRTQ 456 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L+KA R H+L GL IAV N+DEVV IIR S + + A++ + +R Sbjct: 457 FDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNER-------------- 502 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + ++Q AIL++RL RLTGL R+++ ++ L I+ D+L+ Sbjct: 503 ------------FGIDDIQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHP 550 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553 +LL +IK+EL + RRT+I + + ED I EDMV+TV+H Y+KR+P+ Sbjct: 551 QKLLEVIKEELTEISTRFSDKRRTQISALGVQNLDIEDLIAEEDMVITVTHASYIKRLPV 610 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y++Q+RGGKG G+ ++D DFV ++F+ STH VLFF++ G VY+ KV LP+GS A Sbjct: 611 ATYKSQKRGGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHA 670 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG ALIN+L L++GE T ++ + +++FATK G V++ +SD+ + R G Sbjct: 671 RGSALINVLPLSEGEYPTAVITTRDFP---AEEHLMFATKSGMVKKTAMSDYDKSRRDGL 727 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE+++V + ++L + G+ + F S IR GR + GVRGI+L G Sbjct: 728 IAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITLKDGA 786 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++ M I Sbjct: 787 TMLGMEISNGKGD----------------------------------------------- 799 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT ++ + R G G+ +++ + G L A V ++ Sbjct: 800 ------LLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQ--KKGKLSACRVVGPQHEL 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++VS++G +IRV +I + SRAT+GV I + A+ + V ++ R+ + D E + Sbjct: 852 MIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPD 908 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 109/254 (42%), Gaps = 18/254 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E+ ++ + G VK+ +S Y RR G + ++D D + ++ V V+ Sbjct: 696 FPAEEHLMFATKSGMVKKTAMSDYDKSRRDG--LIAINLKDGDELVNVRRVKESEYVILC 753 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G K ++ P RG + + ++L G + + E S ++ T Sbjct: 754 SSAG---KAIMFEESDIRPTGRGTSGVRGITLKDGATMLGM------EISNGKGDLLVVT 804 Query: 653 KHGNVRRNKLSDFIQINRSG----KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +HG +R +S++ R G IAM ++ + ++++++ ++ G +R Sbjct: 805 EHGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKG-KLSACRVVGPQHELMIVSEEGVMIRV 863 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISG 767 I + + R + GV+ ++LA+ D V ++A + H D +E+ + L Sbjct: 864 QSQDISLLS-RATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPDSNQPQLPLDFLSQK 922 Query: 768 DTEEITSLKNDSSV 781 EE ++ +D + Sbjct: 923 HQEEEINIGDDEQI 936 >gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101] gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101] Length = 879 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 345/903 (38%), Positives = 540/903 (59%), Gaps = 76/903 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV Sbjct: 2 SEGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSA 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY Sbjct: 62 HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K + ++ D+ K+TVDF+ N+D + EP V+ R P +LVNG GIAVGMATN+ Sbjct: 122 TEARMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G +A +DN DI++D LM I+ PDFPTG +I G G++ A+ TGRG IV+ Sbjct: 182 PPHNLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R E+ RE I+VTEIPYQVNKA M+++ A+LV EK+I IA++RDESDR G R+ Sbjct: 242 RAKVGFEEVE-GRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LKR A+ +V+LN LY+YT LQS FSVN +AL +P+ L ++ F+ R +VVV Sbjct: 301 VYILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQLLNLKDMIHYFIEHRHDVVV 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL IA N+DEV+ +IR S N + AR +L++R Sbjct: 361 RRTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIER---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q RAI+E+RL +LTGL +D +R E + L I+ + Sbjct: 411 ----------------FKLSDIQARAIVEMRLRQLTGLEQDKLRAEYDELMKLIEHLKAL 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + + +IK+EL ++D+ RR++I D+ ED I E++V+T+SH GY+KR Sbjct: 455 LADVNLRIDLIKEELTEIRDKYGDDRRSQIEYSGGDVSIEDLIADENVVITISHAGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS Y+ Q RGG G+ RD+DF+ +F+ + H ++FF+ G + +V+ +P GS Sbjct: 515 TNLSEYKTQNRGGVGQKSAGTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGS 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G+A+ N++++ +++ + + D+ N +V TK G V++ L + + Sbjct: 575 KTAKGRAIQNLINIESDDKVKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ + DE+L + E+ I+L K G+ VRF + R GR + GVRGI+ Sbjct: 635 RANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRFEETKTRPM-GRTASGVRGIT 693 Query: 729 LAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+VI M V D + + ++ +R + D E Sbjct: 694 LKDDTDEVIGMVTVGKNDVADSQILVVTENGYGKRTKLVDDDGEDV-------------- 739 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +RI+NR GKG++ +++ ++ G L+++ V Sbjct: 740 -----------------------------YRITNRGGKGVKTLNIT--DKTGKLISINAV 768 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D+D +++++ G IR+ + ++R+ RAT+GV + + + + +V ++ + + + Sbjct: 769 TDSDDLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDAEEVVV 828 Query: 908 STE 910 + Sbjct: 829 DED 831 >gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605] gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605] Length = 865 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 361/920 (39%), Positives = 528/920 (57%), Gaps = 76/920 (8%) Query: 1 MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 MT+ + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MTDSVGPGSGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG A+I NP+I L+++I GPDFPTG ILGR G Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y GRGS+ +RGV++IE DR+ +++TE+PYQ NKAA++E+IAELV +K+ Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L R LS++Q AIL+++L RLT L D Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ GII+ EL +++ TPRRT I++ + D D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYPTPRRTEILDLGGGLSDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + ED V + H +++ F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E ITT++P E ++ +V T Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFS---DDTDLVMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ +K G + F +S Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L D ++SM ++ AD + +A Sbjct: 692 EELRPL-GRTARGVRSMNLRDADALVSMDVLPVELADQVAASADDEDDAASE-------- 742 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++L S G GKR FR+ R+G G+RA Sbjct: 743 --------------------------GPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 776 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 777 KF--RTDADELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDR 834 Query: 891 VVSVERIRESEIVDEAESTE 910 ++ V + D A+ TE Sbjct: 835 LLKVVLVPPEAEDDSADDTE 854 >gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331] Length = 875 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 359/933 (38%), Positives = 524/933 (56%), Gaps = 109/933 (11%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + EEE + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVH Sbjct: 1 MADENTPVMPEEEPTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ Sbjct: 61 RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDS 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 GNFGS DP AA RYTEC++ + ++ D+ ++TVDF+ NYDG QEP VL AR PN Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV G ++NP+ + L++ I+GPDFPTGA Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 +++GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+P+Q N + +KIA+LV+ Sbjct: 241 LVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVK 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQS F NM+AL Sbjct: 300 DGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P ++ ++ +V + EV+VRRT++ L KA +RAH+L GL A+ ++EV+ +IR S Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSN 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E+Q AILE++L RL L Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 I E + L +I E +IL+S + I+ +EL ++ D+ RR+++V DM Sbjct: 454 EHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFGDDRRSKLVPFDGDMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT+S GYVKR YR+Q+RGGKG G +R++D V F+ +TH Sbjct: 514 IEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP ARG+ + N+L+ E+I I+ + E Y+ Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703 V ATK G V++ L D+ G IA+ L DE++ E + E+D+LL +K Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISKKA 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 QSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRP------------------ 731 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 F+ T ++ G+ KRT+ ++R+ Sbjct: 732 -----------------------------------GTFVFTATDGGYAKRTAVDEYRVQG 756 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R T GV Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEEADEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814 Query: 882 IFSTAKDERVVSVERIR----ESEIVDEAESTE 910 + + K + VV + R E+E VD + E Sbjct: 815 LINLGKRDAVVGIARNAEAGREAEEVDGTDEAE 847 >gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 870 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 353/897 (39%), Positives = 508/897 (56%), Gaps = 90/897 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + + + I V I EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M Sbjct: 14 DSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAMYD 73 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ WS+R+ L++ GNFGS Sbjct: 74 GGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSAGN 133 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DP AA RYTEC+L A +L D+ KDTVDFRPNYDG EPVVL AR+PN+LVNG GI Sbjct: 134 DPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSSGI 193 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIK 238 AVGMATNIP HNL EV DG +DNP+ + L++ ++GPDFPT +I+G+ GI+ Sbjct: 194 AVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKRGIE 253 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSI +R V +E+ R+ +VVTE+PYQVN + KIA+LV++ +I IAD Sbjct: 254 EAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITGIAD 313 Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDES R G R+VI LKR A A V+LN LY++T LQ F NM+AL P L + Sbjct: 314 VRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQM 373 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 ++ +V + EV+VRRT+YLL KA +RAH+L L A+ +DEV+ +IR S + + AR L Sbjct: 374 IRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQARTGL 433 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M + + ++Q RAIL+++L +L L R+ + E Sbjct: 434 M--------------------------DLLEIDDIQARAILDMQLRKLAALERNALTAEY 467 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + L +I + DIL S +R II++EL + ++ RRT I+ DM ED I ED Sbjct: 468 DELMAQIADYNDILESDTRQRSIIREELGEIVEKYGDERRTHIIPFEGDMRMEDFIAEED 527 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+S GY KR + YRAQ+RGGKG G ++ +D V F+ +TH +L F++ G Sbjct: 528 VVVTISRGGYAKRTRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGR 587 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K + LP + ARG+ + N+L GE I IM + E Y+V AT+ G V Sbjct: 588 VYRTKAYELPEAARDARGQHVANLLPFQPGEEIAQIMALRDYE---AAPYLVLATREGLV 644 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRV 715 ++++L DF +G IA+ L DE+++ ++D+LL + Q +RFP S +R Sbjct: 645 KKSRLEDFDSARAAGIIAINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRP 704 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV G+ + D ++SM ++ D D Sbjct: 705 M-GRATSGVIGMRFLEDDYLLSMDVIRPGDGSTD-------------------------- 737 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L +E G+ KRT S + + NR GKG+ V + Sbjct: 738 ------------------------VLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEA 773 Query: 836 NEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 G LV ++ D++ ++ G +IR +E++ + R T GV + + AK ++ Sbjct: 774 --RGKLVGALMIDPEVDEVFAITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828 >gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712] Length = 876 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 357/912 (39%), Positives = 516/912 (56%), Gaps = 102/912 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KC Sbjct: 19 RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC+ Sbjct: 79 ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + +L D+ ++TVDF+ NYDG QEP VL +R+PN+L+NG GIAVGMATNIP HN Sbjct: 139 LMTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV G +++PD + L++ I+GPDFPTGA+++GR GI+ AY TGRGSI + Sbjct: 199 LREVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 258 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R Sbjct: 259 RAVVEVEEI-HNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 317 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +V + EV+ Sbjct: 318 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVI 377 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 378 VRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLM----------- 426 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + E+Q AILE++L RL L R I E + L +I E Sbjct: 427 ---------------DLLQIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNA 471 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R I+ +EL ++ ++ RR+++V DM ED I ED+VVT+S GYVK Sbjct: 472 ILASPERQRAIVSEELAALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVK 531 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 532 RTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDA 591 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG+ + N+L+ E+I I+ + E Y+V ATK G V++ L D+ Sbjct: 592 GRDARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYLVLATKAGLVKKTALKDYDSPR 648 Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722 G IA+ L DE++ E + E+D+LL +K Q +RF + +R GR + Sbjct: 649 SGGVIAINLRETEDGSDDELIGAELVSSEDDLLLISKKAQSIRFTATDDALRPM-GRATS 707 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+S D+++SM +V Sbjct: 708 GVKGMSFRADDELLSMNVVRPGT------------------------------------- 730 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 F+ T ++ G+ KRT ++R+ R G GI+A + + + G+LV Sbjct: 731 ----------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGSLV 772 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898 V + D+I+ ++ G +IR VNE+R R T GV + + K + VV + R Sbjct: 773 GALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGS 832 Query: 899 ESEIVDEAESTE 910 E + +DEA E Sbjct: 833 EDDEIDEAVDAE 844 >gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 836 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 351/917 (38%), Positives = 515/917 (56%), Gaps = 96/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDVNTP----LVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG+++IY + R+AQ W+LR LI+GQGNFGS Sbjct: 57 YDGGYRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSP 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC+L A ++ D+ KDTVDF+PNYDG QEP+VL +R+PN+LVNG Sbjct: 117 GNDMPAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSA 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV DG + NP+ + L+E ++GPDFPTGA+I+GR G Sbjct: 177 GIAVGMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIVGRRG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +R + +E+ + R+ +VVTE+PYQVN + IAE V+E RI I Sbjct: 237 IDDAYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGI 296 Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDES + G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P L Sbjct: 297 ADVRDESSSRVGQRLVIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDGVPRTLRLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +VA + EVVVRRT+YLL KA +RAH+L L A+ +DEV+ +IR SP+ A+ Sbjct: 357 QFVRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQG 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q +AIL+++L +L L R I + Sbjct: 417 GLMA--------------------------LLEIDEIQAQAILDMQLRKLAALERQQITD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E ++L I + IL+S R I+ EL + + R+T I+ DM ED + Sbjct: 451 EYDTLMAHITDYQAILASPERQRTIVFDELSEIVSKYGDERKTEIIAYEGDMSIEDLLAE 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 EDMVVT++ GY KR +YRAQ+RGGKG G +R +D V F+ +TH +LFF++ Sbjct: 511 EDMVVTITRGGYAKRTNTDLYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNK 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ L N+L++ E + ++ + E Y+V AT+ G Sbjct: 571 GRVYRVKAYELPDSGRDARGQHLANLLAMQPDEVVMEVLDLRDYEV---APYLVLATRSG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++ +LS++ G IA+ L DE+++ ++E+D+LL ++ Q +RF S + Sbjct: 628 LVKKTRLSEYDSPRSGGLIAINLREDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEAL 687 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ GD++++M + D Sbjct: 688 RPM-GRATSGVIGMRFLGGDELLAMNRIGDGDD--------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +L +E G+ KRT + + + R GKG+ + Sbjct: 720 --------------------------VLIATEGGYAKRTPADQYPVQGRGGKGVLTAKI- 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ G LV V D++ ++ G +IR EI+ + R T GV + + A+ + VV+ Sbjct: 753 -VSARGKLVGAAMVRPEDEVFAITSAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVA 811 Query: 894 VERIRESEIVDEAESTE 910 + R E+ + ++ E Sbjct: 812 LARNAEALETEHNDALE 828 >gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63] Length = 856 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 353/904 (39%), Positives = 559/904 (61%), Gaps = 87/904 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 ++ + I V + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q+G++ Sbjct: 4 EQNQNKNSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLD 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y KCA G+V+G YHPHG+A++YDA+ R+AQD+S+R +L++G GNFGSVDGDPPA Sbjct: 64 PSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K + +L D+ K+TVDF NYD +EP VL +R+PN+LVNG GIAVGM Sbjct: 124 AYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 AT IP HNLGE +D +IDNPD +L +ME + GPDFPTG +I+GR+GI+ AYATGRG Sbjct: 184 ATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRG 243 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 I +R + I + R +I+VTE+PY+VNKA ++E IA+LV++KRI I+++ D SDR+ Sbjct: 244 KITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRK 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G + I++KR AS ++LNQL+ YT LQ+ F M+++ +P+ +L +L+ ++ F+ Sbjct: 304 GMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQA 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+ RRT + L KARDRAH+L GL IA+ +DEV++IIR S + +A+ LM+R Sbjct: 364 EVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L +VQ +AI+++RL +LT + + I +E+ +L +I+E Sbjct: 418 --------------------FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEE 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L+IL+S R L I+K+E++ ++++ PRRT I +++ ED I +E+ V+T++ G Sbjct: 458 YLEILASEPRQLEIVKEEIMQIRNKYADPRRTEICAVSGEVDIEDLIPQEECVLTLTQFG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR+ Y+ QRRGG+G SG+ R+ED ++F++++H VLFF+ G VY+ K + + Sbjct: 518 YVKRLSADTYKIQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEV 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS Q++G + N++ ++ E++T+++ PE + Y+V T+ G ++R +L+ + Sbjct: 578 PEGSRQSKGVNIANLIPISPDEKVTSMIRVPEFD---EEKYLVMVTRQGIIKRIELNAYN 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G IA++L+ DE+ V + +++ TK G +RF + IR GR + GV+ Sbjct: 635 TSRKGGLIALELNEGDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAM-GRQARGVKA 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ++L +GD V+ M++V Sbjct: 694 MALKEGDCVVGMSVVREGG----------------------------------------- 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +LTVSE G+G+ +S D+R+ +R GKG+ + G + A+ Sbjct: 713 ------------LVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHT---EKYGDVAAIKV 757 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 VN +D II++S++G +IR+ IR+ +R +KGV + D+RVV++ R+ + D+ Sbjct: 758 VNLDDDIIIISEEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARVPHIDGEDD- 816 Query: 907 ESTE 910 ES E Sbjct: 817 ESAE 820 >gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205] Length = 843 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 359/893 (40%), Positives = 526/893 (58%), Gaps = 67/893 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143 YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL+ LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 +D+ +TVDF N+DGS QEP V+ AR P +L+NG GIAVGMATNIP HNL E++DG + Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259 A+I NP++ L + GPDFPTG ILGR GI+ Y TGRGS+ +RGV+ IE K Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DR+ +++TE+PYQ NKAA++E+IAELV +K++ IAD+RDESDR G R+VIEL+R A Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + RRT+YLL K Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +R H+L+GL IA+ NLD ++ +IR + + +AR EL+++ Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQ------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSEVQ AIL+++L RLT L D IR E L +I + DIL+ + R+ G Sbjct: 402 -------FGLSEVQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVYG 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I EL ++ D+PRRT I++ +ED D I E VV ++ GY+KR+P+S + A Sbjct: 455 LITDELGVIRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RG +G++G + E+ V + H S+L FS G VY +R+P+ S A+G ++ Sbjct: 515 SRGTRGKAGTKTQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 +L + + E+IT+++ E + +V T G V+R +LS F I +G IA+ L+ Sbjct: 575 QLLPIPREEQITSLLAVSEFT---EDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLE 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737 D + V + +L+ ++ G + F +S +R GR + GVR ++L GDQ++S Sbjct: 632 EGDALTWVRLAQPGDSVLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ AD E S + ++ + + Sbjct: 691 MDVLPVELADRVE----------------------------GSSAASDEDDTEEVAPSEG 722 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++L S G GKR FRI R+G G+RA + LV + + ++++LVS Sbjct: 723 PWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKF--RRDGDVLVGLRVLGAGEELLLVS 780 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++G ++R+ + + SRA GV + +R+ V + + DE + Sbjct: 781 ERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLVPPALEEDEESGED 833 >gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] Length = 850 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 356/907 (39%), Positives = 540/907 (59%), Gaps = 98/907 (10%) Query: 1 MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ EE + I + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL Sbjct: 1 MSKKPQYDPEEIRYPNQHIEVSPLVPEMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M + + +K + K A G+V+G+YHPHG+A++YDAL R+AQD+S+R +L++G GNF Sbjct: 61 YAMYEDNLTADKPFKKSATCVGDVLGRYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS+DGDPPAA RYTE RL K + +L D+ KDTVD+ PN+D + +EP VL +R+PN+LVN Sbjct: 121 GSIDGDPPAAYRYTEARLSKISDEMLRDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GIAVGMATNIP HNL EV++ + V+DNP+ +L LME I+GPDFPT +I+GR+GI Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINATICVLDNPEAELCDLMEHIKGPDFPTKGIIMGRSGI 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AYATGRG + +R + E+ DR +I+VTEIPYQVNK +++ +A+ V +KR+ I+ Sbjct: 241 RAAYATGRGRLCVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFT 353 D+RDESDR G R+VIELKR A+ V+LN+L+ T LQ+ F++NM+AL +P + Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLFAQTQLQTTFAINMLALVEVNGKLQPRILS 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L IL ++A++E+V++RRTKY L KA++RAH+L GL IA N+DEV+ IIR + A Sbjct: 361 LRHILDEYIAYQEQVIIRRTKYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYD--DA 418 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + +LM+R L +VQ +AIL++RL L GL R+ + Sbjct: 419 KEKLMER--------------------------FSLDDVQAQAILDMRLKALQGLDREKL 452 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 NE L I +L S L G++K EL++++D+ R T I + +++ ED I Sbjct: 453 ENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQDVEDEIDIEDLI 512 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E+ V T++ GY+KR+P S Y+ QRRGGKG + + ++ED+V +F STH +LFF+ Sbjct: 513 EEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTVFTASTHDFILFFT 572 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V+++K +++P A+G L+NIL + GE++T ++ E + Y+ T+ Sbjct: 573 NKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLREFP---EDRYLAMVTR 629 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V+R +LS ++G + LD DE+++V + IL+ T G + F + + Sbjct: 630 NGTVKRIQLSAINTARKAGIRCITLDEGDELIAVRETDGDQAILIATHDGMSICFKETDV 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR++ GVRGI L +GD VI A Sbjct: 690 RCM-GRDACGVRGIKLREGDYVIGAA---------------------------------- 714 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI---SNRSGKGIRA 829 +L V+E G+GKRT ++ R NR G G++ Sbjct: 715 -------------------RAKAGHQVLMVTENGYGKRTDMDEYIRSDGPQNRGGYGLKG 755 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 +V++ + G +V V V+D D I++++D G +IR+ V+ I RA +GV + + + Sbjct: 756 YNVTE--KTGPVVGVKVVSDADDILVINDAGVIIRMAVSGISTYGRAAQGVKLMNLDEGV 813 Query: 890 RVVSVER 896 +V+S R Sbjct: 814 KVISFAR 820 Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + D+ DE++ + ++ K RF + ++ + + + L Sbjct: 399 IAQDNIDEVIHIIRSRYDD-----AKEKLMERFSLDDVQ------AQAILDMRLK----- 442 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ + + + + + Q+ L S + ++ +ER E++ Sbjct: 443 -ALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQD 501 Query: 796 ------------KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +E+ + T++ G+ KR + ++ R GKGI A + + + + Sbjct: 502 VEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTV-- 559 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRES 900 F + +D I+ ++KG + R +I A R KG + + E+V ++ +RE Sbjct: 560 -FTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLREF 618 Query: 901 EIV 903 Sbjct: 619 PED 621 >gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162] Length = 837 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 346/917 (37%), Positives = 515/917 (56%), Gaps = 93/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDG+KPV RRIL+ Sbjct: 1 MTDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYAS 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ E MG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 61 YDAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L + ++TVDF PNYDG QEP VL AR PN+L+NG G Sbjct: 121 GNDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++N D L+A ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY+TGRGSI +RGV +E+ S ++V+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 301 SKIEDQSSDRVGMRIVVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V+VRRTK+LL KA +RAH+L GL A+ LDEV+ +IR S E AR Sbjct: 361 QMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIART 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL+++L +L L R I + Sbjct: 421 GLME--------------------------LLDVDELQANAILDMQLRKLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL + ++ RRT+I+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILDKPERQRAIVRDELGEIVEKFGDDRRTKIIAADGDVTDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + + Y+V ATK+G Sbjct: 575 GRVYRAKAYELPEQSRTARGQHVANLLAFQPEERIAQVIQIKGYD---DAPYLVLATKNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L DF G +A+ L DE++ + E+D+LL +K Q +RF + + Sbjct: 632 LVKKSRLEDFDSNRSGGIVAINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEAL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++++ +V Sbjct: 692 RPM-GRATSGVQGMRFNGDDQLLALNVVQE------------------------------ 720 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRT+ D+ + R GKG+ Sbjct: 721 -----------------------DTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFD 757 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV VND ++ ++ G +IR ++R A R TKGV + + + +++ Sbjct: 758 P--KRGDLVGALIVNDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLA 815 Query: 894 VERIRESEIVDEAESTE 910 + R + E + ++ TE Sbjct: 816 IARNAD-ETDETSDETE 831 >gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] Length = 864 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 354/926 (38%), Positives = 518/926 (55%), Gaps = 102/926 (11%) Query: 1 MTEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 M + EE + + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MADENTPVTPEEGGVIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL +R+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G +++P+ + L+E I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EVVVRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM G + + E+Q AILE++L RL L R Sbjct: 420 IARGGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E +IL+S R GI+ EL ++ ++ R+T++V DM ED Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVTV+ GYVKR YRAQ+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTVTRGGYVKRTKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I+ + + Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYD---AAPYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + ++D+LL +K Q + Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF + +R GR + GV+G+S +GD ++SM +V Sbjct: 691 RFTATDESLRPM-GRATSGVKGMSFREGDALLSMNVVR---------------------- 727 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRT ++R+ R G Sbjct: 728 -------------------------------PGTFVFTATDGGYAKRTPVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G LV V + D+I+ +S G +IR V+ +R R T GV + + Sbjct: 757 LGIKAAKIVE--DRGELVGALVVEETDEILAISLSGGVIRTRVSGVRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910 K + VV + R E+ E + Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840 Score = 77.5 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 14/248 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + R++ +L + +L S Sbjct: 625 PYLVLATKGGLVKKTPLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLIS 684 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + + P R + + +S +G+ +V AT Sbjct: 685 KKAQSIRFTATDESL-RPMGRATSGVKGMSFREGD------ALLSMNVVRPGTFVFTATD 737 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ E++ + ++IL + G +R + Sbjct: 738 GGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDEILAISLSGGVIRTRV 797 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S +R GR+++GV+ I+L K D V+ +A A + +E + + T+ Sbjct: 798 SGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 856 Query: 771 EITSLKND 778 E + + Sbjct: 857 EGEAPSAE 864 >gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A] gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A] Length = 872 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 349/918 (38%), Positives = 537/918 (58%), Gaps = 73/918 (7%) Query: 1 MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG +A+I NP+++ LM II+GPDFPTG ILGR+G Sbjct: 181 NGSSGIAVGMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 IK Y +GRGSI +RGV+ IE DR+ +++TE+PYQ NKA ++E+IA++V +K+ Sbjct: 241 IKETYLSGRGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + IAD+RDESDR G R+V+EL+R + V+LN L++ T LQ+ FS NM+AL +P Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L+ F+ FR E + +RTKYLL KA R H+L+GL +A+ LDE++ +IR + + T Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 A+ +L + L+++Q+ AIL+++L RLT L D Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL+ + R+ I K EL +K++ +T RRT I++ +ED D Sbjct: 455 IRLEHEDLVKKITDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P++ + A RG +G++G + E+ V + H S+L F Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ + + Y++ T Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVSSFD---DENYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R LS F +I +G IA+ L+ D + V + +L+ +K G + F ++ Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR++ GV+ ++L GD ++SM ++ AD+ ++ + S Sbjct: 692 SELRPL-GRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESE----- 745 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++L S G GKR FR+ R+G G+RA Sbjct: 746 --------------------------GPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAI 779 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS++G ++R ++I SRA GV I ++ Sbjct: 780 KF--RKDGDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDK 837 Query: 891 VVSVERIRESEIVDEAES 908 + V + +I D+ E+ Sbjct: 838 LSEVVLVPPEQINDDDEN 855 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 21/255 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E+ ++ ++ GY+KR PLS + R G + + D D +T + + + SVL Sbjct: 621 FDDENYLLMLTRGGYIKRTPLSAFSKIRANG--LIAIGLEDGDALTWVRLAESGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-------------ILSLNQGERITTIMPFP 637 S G ++ L ARG +N L + Sbjct: 679 SKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELH 738 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKL-DSRDEILSVETCTQEN 694 + S +V+ A+ G +R ++ F R+G A+K DE++ + + Sbjct: 739 SESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGE 798 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 ++LL ++ G VR I R + GVR L GD++ + +V + D+ Sbjct: 799 ELLLVSERGVIVRTSADKI-SQQSRAATGVRIQKLDNGDKLSEVVLVPPEQINDDDENQS 857 Query: 755 MKHMSAQRRLISGDT 769 + + Sbjct: 858 SSTKESINTDPTSKN 872 >gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] Length = 878 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E + + + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + Sbjct: 2 EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +K Y KCA GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDG Sbjct: 62 ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE R+ K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GI Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNL EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +RG + I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDE Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDE 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SD+ G R+V ELKR +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++ Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 AF+++++ RRT + L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 K L + ++ + + + LSE Q AI+++RL +LTGL RD + +EL + Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDILSS R+ IIK+E+ ++K++ RRT I +++ ED I E+ V+T Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTY 540 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +++GY+KR P+ VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P GS Q+RG ++N+L L++GERI +M + N Y + TK+G ++R L Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 DF + ++G A+ L DEI + ++ I++ T LG + F IR GR + Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAA 716 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR I L + D ++ A V D Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILTV++KG+G+ ++ D+R+ NR G G++ + ++ G + Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + + +D +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E Sbjct: 783 GIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842 Query: 903 VDEAESTE 910 D E + Sbjct: 843 ADIEEVEQ 850 >gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 370/900 (41%), Positives = 548/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L +R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ E + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFE---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + + I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ D Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] Length = 829 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 376/888 (42%), Positives = 545/888 (61%), Gaps = 88/888 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY Sbjct: 6 NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H + E++D V +IDNP +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I I+++RDESDR+G RVVI Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RR Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+ + Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AIL++RL RLTGL R+ I NE L EI+ IL Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N+++L E+I + + + + F TK+G ++R LS+F I G Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRNVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + + IL+ T G CVRF + +R GR + GV I Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V + Sbjct: 695 PKDYVIGATVVSN----------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 708 -----ENEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807 >gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] Length = 812 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 349/893 (39%), Positives = 524/893 (58%), Gaps = 85/893 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +V+I EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF ++ +N+ KCAR Sbjct: 3 QNVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCAR 62 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG++A+Y+AL R+AQD+S+R L +GQGNFGS+DGD AA RYTE R+ Sbjct: 63 IVGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMS 122 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A L+D+ K+TVDFRPNYD + EPVVL + PN+L+NG GIAVGMATNIP HNL Sbjct: 123 RLASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLS 182 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ D + +ID P+ ++ LM++++GPDFPTG + G+ +AY TGRG++ +RG I Sbjct: 183 ELSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAGQGLYDAYTTGRGTVKVRGKVEI 242 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + +++ EIP+ +NK++++EKIA L+ +++I ++DLRDESDR+G RVVIELKR Sbjct: 243 EDRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKR 302 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G ++++N LY+YT L++ F +NM+A+ +P L L F+ R EVVVRRTK+ Sbjct: 303 GTMPEIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALAYFLDHRREVVVRRTKFE 362 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL A+ ++DEVV +IR S P A+ LMQR Sbjct: 363 LRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQR---------------- 406 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSEVQ +AIL++RL RLTGL R I EL L +I IL S Sbjct: 407 ----------FELSEVQAQAILDMRLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASV 456 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L G+I+ E+ +K TPRRT ++ +++ ED + +D+V+T+S GY+KR L + Sbjct: 457 LWGVIRDEVEYIKQTYSTPRRTEVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGI 516 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ QRRGGKG +GV ++DFV + + H +L F++ G +++ KV ++P GS A+G Sbjct: 517 YQQQRRGGKGVAGVHTGEDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKG 576 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N++ + + E + TI+ E + +FAT+ G V+R+ + + + + G IA Sbjct: 577 VHIANLVPMEKDEWVNTILTVREFA---EDKSFLFATRRGMVKRSSAALYARSRKGGLIA 633 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V T ++ ++L T G +RF +R GR + GV+GI+L GD V Sbjct: 634 VGLREDDELIMVREITDDDFVVLATADGIAIRFSCRDVRNM-GRGATGVKGIALRHGDTV 692 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ ++ K Sbjct: 693 VACLVL----------------------------------------------------KE 700 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I+T+S GFGKRT+ +R+ +R GKGI V+ + G ++ V D++ ++L Sbjct: 701 DSPAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTP--KTGPVIGAKSVLDDEALVL 758 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +IR+ V+EIR RAT GV + RVV + + + E+ Sbjct: 759 LTSTNKIIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTVNSDADAEGEEA 811 >gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] Length = 862 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 349/915 (38%), Positives = 528/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ + + I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDN----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 YDSGYRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECR+ A ++ D+ ++TVDF PNYDG QEP +L +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DNP+ + ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE+ +R+ IV+TE+PYQVN M+ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEEVG-NRQTIVITELPYQVNPDNMISNIAESVVNGKIAGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L +VA + EV+VRRT++ L++A RAH+L GL A+ LDEV+ +IR SP E AR Sbjct: 356 QMLSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LMQ + + E+Q AIL +RL RL L R I + Sbjct: 416 GLMQ--------------------------LLGVDEIQADAILAMRLRRLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + I + DIL+ R I+ EL + ++ RRT+IV D+ DED I R Sbjct: 450 ELAEIEEIIADLKDILAREERQREIVHDELEEIVEKYGDERRTQIVAASGDVSDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITATGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ E + Y+V AT+ G Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + + +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVSDG----------------------------- 716 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 QF+L + G+GKRT+ ++ R G G+ + Sbjct: 717 ------------------------QFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+A V+++D+I ++ G ++R VN+IR +SRAT GV + + A D +++ Sbjct: 753 P--KRGKLIAAISVDEDDEIFAITSAGGVVRTEVNQIRPSSRATMGVRLVNLADDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E + ++A++ Sbjct: 811 IDRNVEDDGEEDAQA 825 >gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] Length = 863 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 343/922 (37%), Positives = 535/922 (58%), Gaps = 71/922 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ I S + E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDIIDSGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I+NP I+ L E+I+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ + TGRGSI +RGV++IE+ +++ +++TE+P+Q NKA ++E+IA+LV E++ Sbjct: 241 IRETFKTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + + Sbjct: 361 SLRRMLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTIS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L LS Q AIL+++L RLT L D Sbjct: 421 AREKLQT--------------------------DHELSSTQAEAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I+ E + L +I + IL+S+ R+ II +EL + + +PR+T I++ ++D D Sbjct: 455 IKAEHDELTKKINQYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + VV ++ GY+KR+P++ + + RG +G++G + +D V + H ++L F Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+++ + N+ Y++ T Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFD---NDCYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ ++ G + F I Sbjct: 632 KSGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDI 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L KGD ++SM ++ D +I + Sbjct: 692 NELRPL-GRTARGVKSMNLKKGDNLVSMDVLTSDLVDKLAKIDDLNKE------------ 738 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EE + ++L S G GKR FR+ R+G G+RA Sbjct: 739 ---------------IEENIEVNSSDGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAI 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + + ++++ V++KG ++R ++I SRA GV + + + Sbjct: 784 KF--RIQDDVLVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDEGDH 841 Query: 891 VVSVERIRES--EIVDEAESTE 910 + V + E +D+ E Sbjct: 842 LSEVVLVPREQIEEIDQTSPEE 863 >gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] Length = 827 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 355/896 (39%), Positives = 535/896 (59%), Gaps = 86/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SE G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ I++++ G +IR ++ R+T GV + + D +V S+ + Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811 >gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601] gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. AS9601] Length = 865 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 342/919 (37%), Positives = 533/919 (57%), Gaps = 69/919 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ + S + E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF Sbjct: 61 YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G ++I NP ++ L EII+GPDFPTG ILGR G Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRDG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 IK + TGRGSI +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK+ Sbjct: 241 IKETFKTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L F+ FR E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + + Sbjct: 361 SLRKMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVS 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR L LS Q AIL+++L RLT L D Sbjct: 421 ARENL--------------------------QADHELSATQAEAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I+ E + L +I IL+S+ R+ II +EL + + +PR+T I++ ++D D Sbjct: 455 IKGEHDELTRKINLYKQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I + VV ++ GY+KR+P++ + + RG +G++G +++D V + H ++L F Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P+ S A+G + +L + + E+IT+++ + N+ Y++ T Sbjct: 575 SDRGVSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFD---NDCYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710 K G ++R LS F +I +G IA+ L+ D + V + + +L+ ++ G + F I Sbjct: 632 KAGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDI 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV+ ++L KGD ++SM ++ D + + Sbjct: 692 NELRPL-GRTARGVKSMNLRKGDNLVSMDVLTSDLVDQLAKSEDITKE------------ 738 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 S+E + + ++L S G GKR FR+ R+G G+RA Sbjct: 739 ---------------SDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAI 783 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + + ++++ V++KG ++R ++I SRA GV + + Sbjct: 784 KF--RIKDDVLVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDMGDH 841 Query: 891 VVSVERIRESEIVDEAEST 909 + V + + + +S Sbjct: 842 LSEVVLVPHEQTEEADQSN 860 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 16/254 (6%) Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 F ++ + + D ++ + ++L T+ G R P++ R S Sbjct: 491 DERFSSPRKTEILDLGGGLDD----IDLIANDRSVVLLTEAGYLKRMPVNEFES-TSRGS 545 Query: 722 VGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 G G + D+V IS D + Y + Sbjct: 546 RGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRTAKGTPSVQLLP 605 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E I+ + + ++L +++ GF KRTS F G+ A ++ + Sbjct: 606 IPREEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIR--SNGLIAINL---EDG 660 Query: 839 GALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 AL V + D +++ S G I R+ +NE+R R +GV + K + +VS++ Sbjct: 661 DALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSMDV 720 Query: 897 IRESEIVDEAESTE 910 + S++VD+ +E Sbjct: 721 LT-SDLVDQLAKSE 733 >gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 809 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 357/890 (40%), Positives = 546/890 (61%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S + E GI V I +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM + + Sbjct: 1 MSENNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 N Y K AR+ G+VMGKYHPHG+++IY+A R+AQD++ R L++GQGNFG++DGD Sbjct: 61 ASNGPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+TVDF PN+D + +EP +L AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+ HN+ E +DG +A IDN +I + L +II+GPDFPTGA I+G GIK AY TGR Sbjct: 181 MATNMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R V+ I+ +RE+IV+TE+PYQVNK+A++ KIAEL + K I I+++ D S+R Sbjct: 241 GKITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G +++ELKR A+A+V+LN+LY+ T +Q+ F + +AL +PE L I++ +V + Sbjct: 301 KGINIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EVV RRTK+ L+KA RAH++ GL IA+ N+D +++I+R S + + A+ + + Sbjct: 361 VEVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEE----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+E Q++AIL++R+ RLTGL RD + E L +IK Sbjct: 416 ---------------------FKLTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIK 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL + L+ +IK+ELL +K++ RRT I D+E ED I +ED+V+T++ Sbjct: 455 WFKEILENNDVLMNLIKEELLEIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQF 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ Y+ Q+RGG+G S MRD+DFV +LF+ STH +LFF+SLG V+K K + Sbjct: 515 GYIKRMSEGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S +RG A+IN+L L++ ER+T+I+P E + +L + T+ G ++R D+ Sbjct: 575 IPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYD---PDLNFLMVTEKGLIKRTPFKDY 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +SG IA+KL+ D+++ V + D++L TK G +RF +R +GRNS+GV+ Sbjct: 632 KNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVR-KSGRNSMGVK 690 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L K D V+S +V+ Sbjct: 691 SMDLDKDDIVVSSDLVVD------------------------------------------ 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++++L +SE G+GK T +R NR GKG+ ++ N+ G + + Sbjct: 709 -----------DKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKIT--NKTGDVASAA 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 V D ++++++ G +IR+ +I + R T GV + + D +VV+V Sbjct: 756 VVEKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNLT-DAKVVAVA 804 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 9/215 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745 +E+ ++ T+ G R + R GV ++ D V + + D Sbjct: 501 IIKKEDVVITLTQFGYIKRMSEGTYKPQK-RGGRGVSSGNMRDKDFVKELFVTSTHDMIL 559 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + D + ++ + + L V+E Sbjct: 560 FFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMVTE 619 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG KRT D+ N GI A + NE L+ V D++ +ILV+ KG IR Sbjct: 620 KGLIKRTPFKDY--KNIRKSGIIAIKL---NEGDKLIDVHLTKDDEDVILVTKKGLSIRF 674 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++R + R + GV KD+ VVS + + + Sbjct: 675 NEEQVRKSGRNSMGVKSMDLDKDDIVVSSDLVVDD 709 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + +E + + ++ +++ KE ++T+++ G+ KR S ++ R G+G+ Sbjct: 476 EIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGV 535 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-- 885 + ++ + + L F + +D I+ + G + ++ EI SR ++G I + Sbjct: 536 SSGNMRDKDFVKEL---FVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLD 592 Query: 886 -AKDERVVSVERIRESEIV 903 +DERV S+ ++E + Sbjct: 593 LDEDERVTSIIPVKEYDPD 611 Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 74/191 (38%), Gaps = 19/191 (9%) Query: 727 ISLAKGD---QVIS---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 I GD VIS I + ++ + + +R+ G + S Sbjct: 477 IKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVS 536 Query: 781 VEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ +EL IL + G + +Y+ +R+ +G ++ ++E Sbjct: 537 SGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDED 596 Query: 839 GALVAVFPVNDND---QIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892 + ++ PV + D ++V++KG + R P + IR G++ + ++++ Sbjct: 597 ERVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKDYKNIRK-----SGIIAIKLNEGDKLI 651 Query: 893 SVERIRESEIV 903 V ++ E V Sbjct: 652 DVHLTKDDEDV 662 >gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri] gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] Length = 860 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ + + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + + I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ D Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] Length = 877 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 379/848 (44%), Positives = 536/848 (63%), Gaps = 17/848 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK +INIL L +GERIT I+P E ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVDEFS---PEKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GVR Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ LA DQV+S+ + + + + T V Sbjct: 722 GMKLADEDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++ +++ G RT + R+ +G+ ++ +V + Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDE---NVVGLQ 836 Query: 846 PVNDNDQI 853 +++ +++ Sbjct: 837 RIDEVEEV 844 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 68/427 (15%), Positives = 152/427 (35%), Gaps = 29/427 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R + A Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDAFG-----DVRRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R I+ L E E D E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFNEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR +S + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVSEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + S + E T Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVDLPEGEDAADTENTAEVTSENPETPT 870 Query: 774 SLKNDSS 780 + Sbjct: 871 GDDEPQA 877 >gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] Length = 879 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 355/937 (37%), Positives = 525/937 (56%), Gaps = 113/937 (12%) Query: 1 MTEHIISSDEEEEK-----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 M + E + V + EMQ SYL YA++VI+ RA+PD+RDGL Sbjct: 1 MADENTPVTPEPATPEEVTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ Sbjct: 61 KPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++ GNFGS DP AA RYTEC++ + ++ D+ ++TVDF+ NYDG QEP VL A Sbjct: 121 LVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPA 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDF 225 R+PN+LVNG GIAVGMATNIP HNL EV G +++P+ + L++ I+GPDF Sbjct: 181 RFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELLDALIERIKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PTGA+++GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+P+Q N + +KIA Sbjct: 241 PTGALVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIA 299 Query: 286 ELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 +LV++ ++ IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F NM+AL Sbjct: 300 DLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLAL 359 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P ++ ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +I Sbjct: 360 VDGVPRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALI 419 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R S E AR LM G + + E+Q AILE++L R Sbjct: 420 RRSNTVEIAREGLM--------------------------GLLEIDELQANAILEMQLRR 453 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L I E + L +I E +IL+S ++ I+ +EL ++ D+ RR+++V Sbjct: 454 LAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFD 513 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 DM ED I ED+VVT+S GYVKR YR+Q+RGGKG G +R++D V F+ + Sbjct: 514 GDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVST 573 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + LP ARG+ + N+L+ E+I I+ + E+ Sbjct: 574 THHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAV-- 631 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLT 699 Y++ ATK G V++ L D+ G IA+ L DE++ E + E+D+LL Sbjct: 632 -PYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDELIGAELVSAEDDLLLI 690 Query: 700 TKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 +K Q +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 SKKAQSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------ 737 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 F+ T ++ G+ KRT ++ Sbjct: 738 -----------------------------------------FVFTATDGGYAKRTPVDEY 756 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ R G GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R T Sbjct: 757 RVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDT 814 Query: 878 KGVVIFSTAKDERVVSVERIR----ESEIVDEAESTE 910 GV + + K + VV + R E+E VD A+ + Sbjct: 815 MGVQLINLGKRDAVVGIARNAEAGREAEEVDGADDVD 851 >gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946] gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946] Length = 805 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 358/889 (40%), Positives = 523/889 (58%), Gaps = 86/889 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + IT+E++ S++ YA++ I+ RA+PD+RDGLKPV RRIL+ Q G+ +K+ K Sbjct: 2 SQVLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I GEVM KYHPHG+AAIYD LAR+AQ W+ R LI+GQGNFGS+DGDPPAA+RYTE Sbjct: 62 SAGIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL + +L D+ K+TV+F PNYDG+ ++P VL A PN+LVNG GIAVGMAT+IP H Sbjct: 122 RLSSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+D VA+ID P + LD +M+++ GPDFPTGA + R GI+ AYA+GRGS+ +R Sbjct: 182 NLSEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGARLS-RKGIREAYASGRGSLKVRAK 240 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E R +V TEIPYQVNKA ++ +IA L + K I +IA LRDESDRQG R+ +E Sbjct: 241 VRNED-KNGRAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVE 299 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA+ V+LN+LY+++ LQ+ F+VN++A+ +P+ +L +L+ ++ R EVV RRT Sbjct: 300 LKRGANPQVVLNKLYKHSRLQASFTVNLLAIVNGEPKVLSLPELLRHYLNHRREVVYRRT 359 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L++A+ RAHVL GL IA+ ++DEV+ +IR S + AR L+ R Sbjct: 360 QYELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIAR------------- 406 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LS++Q +AIL++RL RL GL R+ ++ E L I IL Sbjct: 407 -------------FALSDIQAQAILDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQD 453 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 RL G++K+ELL +K++ RRT++ E ED I E MV+T++ G++KR PL Sbjct: 454 EKRLWGVVKEELLEIKNKYGDARRTQLTEFEEGFNPEDLIEDEPMVITLTSQGFLKRTPL 513 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG G ++ED +F+ S H +LFF++ G VY+EKV+ LP S QA Sbjct: 514 EAYRAQGRGGVGAQAGKTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQA 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG ++++L L +GE + ++ Y VFAT+ G ++R ++ ++ ++ +G Sbjct: 574 RGTHVVSMLPLIEGEEVAALLGVRSLS---EAGYFVFATRQGLIKRTEIQEYQNLSSAGL 630 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 IA+ L D ++ V I+L T GQ +RF + +R GR S GV GI +G Sbjct: 631 IAINLLENDALIGVGIAQDGEQIMLATAYGQAIRFDLEDVRA-TGRASQGVTGIRFKDEG 689 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQV+S+ I+ Sbjct: 690 DQVVSLVILPKGY----------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E +L V KG+GKRTS ++ + R G+G+ ++ ++G L A+ V ++ Sbjct: 703 ----EGEVLAVGTKGYGKRTSVAEYPVQGRGGQGVITFKTTE--KVGKLAALMRVAGDED 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++++S +G IR V I + R T GV I + A+D+ VVS I+ + Sbjct: 757 LLVLSRRGIAIRTKVGSISLYGRPTSGVKIMNLAEDDEVVSAFVIKPQD 805 >gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379] gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] Length = 880 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 357/938 (38%), Positives = 525/938 (55%), Gaps = 114/938 (12%) Query: 1 MTEHIISSDEEEEK------------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48 M + E + V + EMQ SYL YA++VI+ RA+PD+RDG Sbjct: 1 MADENTPETPESVTLEEEVTVPGVGMRVEPVQLETEMQRSYLDYAMSVIVSRALPDVRDG 60 Query: 49 LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108 LKPVHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ Sbjct: 61 LKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRM 120 Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 L++ GNFGS DP AA RYTEC++ + ++ D+ ++TVDF+ NYDG QEP VL Sbjct: 121 PLVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLP 180 Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPD 224 AR+PN+LVNG GIAVGMATNIP HNL EV G +++P+ + L+E I+GPD Sbjct: 181 ARFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELQDALIERIKGPD 240 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284 FPTGA+++GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+PYQ N + +KI Sbjct: 241 FPTGALVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPYQTNPDNLAQKI 299 Query: 285 AELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343 A+LV++ ++ IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F NM+A Sbjct: 300 ADLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLA 359 Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 L P ++ ++ +V + EV+VRRTK+ L KA +RAH+L GL A+ +DEV+ + Sbjct: 360 LVDGVPRTLSIDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIAL 419 Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463 IR S E AR LM G + + E+Q AILE++L Sbjct: 420 IRRSNTVEIAREGLM--------------------------GLLEIDELQANAILEMQLR 453 Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523 RL L I E + L +I E +IL+S ++ GI+ +EL ++ ++ RR+++V Sbjct: 454 RLAALEHQKITAEHDELQAKINEYNEILASPAKQRGIVSEELAAIVEKFGDDRRSKLVPF 513 Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583 DM ED I ED+VVT+S GYVKR YR+Q+RGGKG G +R++D V F+ Sbjct: 514 EGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVS 573 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643 +TH +LFF++ G VY+ K + LP ARG+ + N+L+ E+I I+ + E+ Sbjct: 574 TTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAV- 632 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILL 698 Y++ ATK G V++ L D+ G IA+ L DE++ E + E+D+LL Sbjct: 633 --PYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPDGGDDELIGAELVSAEDDLLL 690 Query: 699 TTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +K Q +RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 ISKKAQSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT----------- 738 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 F+ T ++ G+ KRT + Sbjct: 739 ------------------------------------------FVFTATDGGYAKRTPVDE 756 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 +R+ R G GI+A + + + G+LV V + D+I+ ++ G +IR VNE+R R Sbjct: 757 YRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRD 814 Query: 877 TKGVVIFSTAKDERVVSVERIR----ESEIVDEAESTE 910 T GV + + K + VV + R E+E VD + E Sbjct: 815 TMGVQLINLGKRDAVVGIARNAEAGREAEEVDGTDDAE 852 >gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] Length = 811 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 357/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ VS+ + G +V+V V++++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E +++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811 >gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] Length = 929 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 366/882 (41%), Positives = 535/882 (60%), Gaps = 86/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK + K A Sbjct: 81 LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++A +L DL K+TVD +PNYD + EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV + +IDNPD+ + LME++ GPDFPTG +I+G GIK+AY TGRGSI +R H Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 320 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E T R+++VVTEIPYQVNK + EKIA+ V EK+I I+D+RDES+R+G R+VI+LK Sbjct: 321 VESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 380 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG V+LN LY+ T LQS F + +AL P +L IL+ ++ + +VV RRT++ Sbjct: 381 RGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTEF 440 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA R H+L GL AV N+DE+V IIR S + A+R + +R Sbjct: 441 DLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHER--------------- 485 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L ++Q AIL++RL RLTGL R D+ +E++ L +I D+L+ + Sbjct: 486 -----------FDLDDIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHEN 534 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L +I EL + + RRT+I + + + ED I EDMVVTV+H GYVKRVP+ Sbjct: 535 KILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 594 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YR+Q+RGGKG GV +++ DFV +LF+ STH VLFF++ G VY+ KV LP+G+ + Sbjct: 595 IYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTK 654 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N+LSL++GE+I ++ + Y++FATK G V++ +S++ + + G I Sbjct: 655 GNAIVNVLSLSEGEKIAAVITTRDFP---AENYLMFATKQGMVKKTAMSEYDRTRKDGII 711 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+++V + ++L + G+ + F S R GR + GVRGI L Sbjct: 712 AINLKQGDELVNVRRVHPGDKVILCSSDGKAILFDESQARAM-GRGTSGVRGIMLKGEAT 770 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ M I Sbjct: 771 MLGMEITNGNGD------------------------------------------------ 782 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + ++EKG+GKRT+ ++ R G+G+ ++ + G LVA V +I+ Sbjct: 783 -----LFVITEKGYGKRTAVSEYPEHKRGGQGVFTITMTA--KKGKLVACRVVGPQHEIM 835 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++S++G +IRV +I R+T+GV + + D+ V ++ R Sbjct: 836 IMSEEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIAR 877 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 105/264 (39%), Gaps = 18/264 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 E+ ++ + G VK+ +S Y R+ G + ++ D + ++ V V+ Sbjct: 679 FPAENYLMFATKQGMVKKTAMSEYDRTRKDG--IIAINLKQGDELVNVRRVHPGDKVILC 736 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G K ++ RG + + + L + + E + N + T Sbjct: 737 SSDG---KAILFDESQARAMGRGTSGVRGIMLKGEATMLGM------EITNGNGDLFVIT 787 Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 + G +R +S++ + R I M ++++ +++I++ ++ G +R Sbjct: 788 EKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKG-KLVACRVVGPQHEIMIMSEEGVVIRV 846 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISG 767 I GR++ GV+ +++ D V ++A +++H A Sbjct: 847 KAVDI-SKLGRSTQGVKVMNIGADDHVSAIARMIVHKKKAPKHAENQGMLDLAAAGARDA 905 Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791 D E+ L ++ ++ ++ +E + Sbjct: 906 DETEVVDLGDEEELDESLIDEDDE 929 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 69/279 (24%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLAKGDQVI 736 DEI+ + +Q++ K RF + I+ R G LA+ D V Sbjct: 463 DEIVHIIRSSQDD---AEAKRRMHERFDLDDIQGEAILQMRLRRLTG-----LARQDLVD 514 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKL 795 ++ + A Y++ + + + A D S K + + + E L Sbjct: 515 EISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIA 574 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN------------------- 836 +E ++TV+ G+ KR +R R GKG++ + + + Sbjct: 575 EEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTN 634 Query: 837 -------------------EIGALVAVFPVNDNDQI---------------ILVSDKGTL 862 + A+V V +++ ++I + + +G + Sbjct: 635 FGKVYRVKVHELPVGNRTTKGNAIVNVLSLSEGEKIAAVITTRDFPAENYLMFATKQGMV 694 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++E + G++ + + + +V+V R+ + Sbjct: 695 KKTAMSEYDRTRKD--GIIAINLKQGDELVNVRRVHPGD 731 >gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273] gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273] Length = 815 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 363/884 (41%), Positives = 521/884 (58%), Gaps = 85/884 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K AR+ GEV+GK Sbjct: 1 MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+ A+YD+L R+ QD+SLR LI+GQGNFGS+DGD PAA RYTE R+++ A +L Sbjct: 61 FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP NL EVVDG +A Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263 +I NP++++ LM+ + PDFPT +I G G++ AY TGRG +VIR + IE R Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGIIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNGR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 E IVVTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR G R+VIELKR A A V+ Sbjct: 241 ESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT++ L A R Sbjct: 301 LNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERR 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L GL I + NLDEV+ IR SP+ TA+ LM+R Sbjct: 361 AHILEGLKICLDNLDEVITTIRESPDANTAQDRLMER----------------------- 397 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 LSE+Q +AILE+RL RLTG+ R I E I E IL S R + II+ Sbjct: 398 ---FALSEIQAKAILEMRLQRLTGMERQKIDAEYKETLATIDELRLILQSPERQMEIIRT 454 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 ELL VK+ RRT IV D ED I +ED+V+TV+H G++KR P+S YR Q RGG Sbjct: 455 ELLKVKEVYGDERRTEIVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG +G + +DF+ +F+ STH +LFF++ G Y KV+ +P ARG+AL NI+ Sbjct: 515 KGVTGAQAKHDDFIEHMFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIME 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L+ E+I + + Y++ AT G V++ L +F + R+G A+ +D D Sbjct: 575 LHPDEKIKAYINIRNFD---EPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDA 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +L ++ ++L G VRFP +R GR ++GV+GI+L +G++ I+M Sbjct: 632 LLDARLTDGDHQVILAKSSGLVVRFPEVQVRPM-GRTAMGVKGITLDRGEKCIAMVTTKR 690 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 D +L V Sbjct: 691 TDTA----------------------------------------------------LLAV 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 ++ GFGKR+ D+R++ R +G+ + +IG+LV + VND+D +IL++ G + Sbjct: 699 TDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KIGSLVGLLDVNDDDDLILITTHGIVN 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R V++IRI R T GV + + + ++ R+ +S+ +++ Sbjct: 757 RQHVSDIRITGRNTSGVKLIRLMAGDTISALARVPKSDEETDSD 800 >gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4] Length = 844 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 356/919 (38%), Positives = 538/919 (58%), Gaps = 102/919 (11%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ I V + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 DDKIFDNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+W+ R L++G GNFGS DGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLL------------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 RYTE RL K + + D+ D VDF PN+D + +EP VL ARYPN+LV Sbjct: 122 RYTEARLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLV 181 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVI 231 NG GIAVGMATNIP HNL E++ +IDN + ++D L+EI++GPDFPTG VI Sbjct: 182 NGTTGIAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVI 241 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 LG+ GI+ AY TGR I +R VS IE + +IVVTE+PY VNKA ++E IA+LV++K Sbjct: 242 LGKAGIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDK 301 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 +I I DLRDES R+G RV IEL+R + ++ILNQLY++T LQ F V M+AL +P+ Sbjct: 302 KIDGITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQPKI 361 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L +L ++ +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S + Sbjct: 362 LNLKQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVN 421 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 +A+ LM+R LS+ Q +AI+++RL LTGL RD Sbjct: 422 SAKATLMER--------------------------FGLSDAQAQAIVDMRLRALTGLERD 455 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I+ E + L I I + IL LLG+IK E+ + D+ RRT I D+ ED Sbjct: 456 KIQKEYDDLQILIGKLKAILGDEKILLGVIKTEITEIADKYGDDRRTSIGFDEFDISMED 515 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I + VVT + LGY+KR+ ++AQ RGGKG G+ D+D+VT++ ++S+H +LF Sbjct: 516 MIPVTNTVVTFTKLGYIKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLF 575 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + +P S +RG A++NIL L E+IT ++P + + Y+ A Sbjct: 576 FTNKGRVYRIKAYEIPESSRTSRGIAIVNILQLQPDEKITAMIPIEDY---HEDKYLFMA 632 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ K++++ I ++G A+ L D ++ V+ + D+++ TK GQ +RF + Sbjct: 633 TADGFVKKTKITEYDNIRKNGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSET 692 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR ++GV G++L+ D++I M ++ ++ Sbjct: 693 EVRS-TGRATMGVIGMNLSADDEIIGMQLISQGES------------------------- 726 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++TVSE G GK T +F +R GKG++ Sbjct: 727 ----------------------------LMTVSENGLGKCTLMTEFNTIHRGGKGVKCYK 758 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +++ + G L+ V +D+++L++ GT+IR+ V + SR T GV + ++ ++ Sbjct: 759 ITE--KTGNLIGAKAVEKDDEVMLINTAGTIIRIEVAGTTLLSRITSGVKLIDLKENTKL 816 Query: 892 VSVERIRESEIVDEAESTE 910 +S+ ++R+S+ + E E Sbjct: 817 ISIAKVRKSDTILAEEVEE 835 >gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 827 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 366/897 (40%), Positives = 535/897 (59%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K + Sbjct: 2 QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GK+HPHG+ A+YD+L R+ Q++S+R LI+GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++ A +L DL K TVDF N+D S +EP VL + PN+L NG GIAVGMATNIP Sbjct: 122 EVRMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EVVDG +A+I NP++++ LM+ + PDFPTG +I G G+++AY TGRG +VIR Sbjct: 182 PQNLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIYGYEGVRSAYMTGRGKVVIR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + +E RE IVVTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR G R+ Sbjct: 242 ARAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY++T +Q F V M+AL P L ++ ++ R E+V+ Sbjct: 302 VIELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMVYYIKHRNEIVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIER---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTG+ R I E + I+E I Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR Sbjct: 456 LGSPEKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGGKG +G + +DFV +FI STH +LFF++ G + KV+ +P Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+AL NI+ L QGE+I + + ++V AT +G V++ L DF + Sbjct: 576 RAARGRALANIMELQQGEKIRAYINIRNFD---EPGFIVMATTNGIVKKTPLEDFSHPRK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ +D DE+L ++ I+L G VRFP + IR GR ++GV+GI+L Sbjct: 633 NGIAAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSM-GRTAMGVKGITLD 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G++ ISM D Sbjct: 692 EGEKCISMVTTKRFDTA------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V++ GFGKR+ D+R++ R +G+ + ++GAL+ + VND+ Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KVGALIGLLDVNDD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D +I+++ +G + R V++IR+ R T GV + + + ++ R+ +S+ +++ Sbjct: 758 DDLIIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKSDEEVDSD 814 >gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ + + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + + I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ D Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] Length = 878 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 379/843 (44%), Positives = 531/843 (62%), Gaps = 17/843 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L GERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GVR Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ LA DQV+S+ + + + + T V Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++ +++ G RT + R+ +G+ ++ ++V + Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836 Query: 846 PVN 848 ++ Sbjct: 837 RID 839 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R A + + + Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DI D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L + E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + A + + Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAED 870 Query: 774 SLKNDSSV 781 + Sbjct: 871 DAEEGKEE 878 >gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329] Length = 878 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 379/843 (44%), Positives = 531/843 (62%), Gaps = 17/843 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L GERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GVR Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ LA DQV+S+ + + + + T V Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++ +++ G RT + R+ +G+ ++ ++V + Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836 Query: 846 PVN 848 ++ Sbjct: 837 RID 839 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R A + + + Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DI D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L + E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + A + + Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAAD 870 Query: 774 SLKNDSSV 781 + Sbjct: 871 DAEEGKEE 878 >gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514] gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514] Length = 893 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 366/925 (39%), Positives = 552/925 (59%), Gaps = 87/925 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + +++ DE++NS+L Y+++VI+ RA+PD+RDGLKP RRILF M + + N+++ Sbjct: 21 NEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHR 80 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCA+I G+ G YHPHG A IY L MAQ W++R LI+GQGNFGS++GDPPAA RYTE Sbjct: 81 KCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTE 140 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ L+ D+ KDTVDF PNYD + +EP V A +PN+LVNGG GIAVGMATN+ Sbjct: 141 ARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAP 200 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG A ID+P I + LM+ I+GPDFPTG ++ G GIK +ATGRG I +RG Sbjct: 201 HNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVCGLEGIKKYFATGRGQIKMRG 260 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E+ REQIV++ +P+ VN A + E+IAELV EK I DI+ LR+ESD R+VI Sbjct: 261 KVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESDE-NTRIVI 319 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR AS V++N LY +TSL+S F+VN +A++ +P+ L ++ A++ R EV++RR Sbjct: 320 ELKRDASPKVVINNLYNHTSLESSFAVNALAIDHGRPKTLGLKDLINAYIEHRREVIMRR 379 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L KA +RA L G IA++N+DE +RIIR S N E AR +L+ +N ++ + Sbjct: 380 TRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQIGI 439 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LI D + ++G SE Q AIL+LRL +LTGL D +R E +L IK+ LDIL+ Sbjct: 440 LIRDEAR--LTNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILA 497 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+L IIK EL +K++ TPR T +V +M ED I E +++T++H G +KR Sbjct: 498 KESRVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTN 557 Query: 553 LSVYRAQRRGGKGRSGVVMRD--------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 +S YRAQRRGGKG G+ R+ +DF+ LF TH ++FF++ G V+ E+V Sbjct: 558 VSSYRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVH 617 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPF-------PEDESSWNNLYVVFATKHGNV 657 +P + ++G+++ N+L L E+I ++ ED++ + + FAT+ G V Sbjct: 618 EIPDMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTV 677 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ------------ENDILLTTKLGQC 705 ++ L+DF + + G IA+ ++ D ++ V+ D++L T+ G Sbjct: 678 KKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMS 737 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +RF S +R GRN+ GVRGI+L K D V+++A+++ Sbjct: 738 IRFAESNVRSM-GRNATGVRGINLEKTDAVVALAVLVP---------------------- 774 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + +L E G GKRT ++R+ +R GK Sbjct: 775 -------------------------------DATLLVAGENGIGKRTDFGEYRVQSRGGK 803 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 GI + ++ G +V V DND+I+L+++ G ++R+ V +IR A R T+GV + + Sbjct: 804 GIITMKTN--DKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINL 861 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 +++ ++ + SE +EAE+ + Sbjct: 862 EAGDKLQAISPVI-SEEKEEAETGD 885 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 23/232 (9%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVM----------RDEDFVTDLFIVSTHTSVLFF 592 + G VK+ L+ + R+GG + R D + V+ Sbjct: 672 TQQGTVKKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLI 731 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + A G IN + + ++ A Sbjct: 732 TREGMSIRFAESNVRSMGRNATGVRGIN---------LEKTDAVVALAVLVPDATLLVAG 782 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++ +R GK + + + D+ + T ++I+L T+ GQ VR Sbjct: 783 ENGIGKRTDFGEYRVQSRGGKGIITMKTNDKTGGVVGALTVRDNDEIMLITEAGQMVRIS 842 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 + IR AGRN+ GV+ I+L GD++ +++ V+ + + E ++ + + Sbjct: 843 VKDIRE-AGRNTQGVKLINLEAGDKLQAISPVISEEKEEAETGDAIEPLKQE 893 >gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 812 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 354/891 (39%), Positives = 534/891 (59%), Gaps = 86/891 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + + I E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K + K Sbjct: 8 EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I GEVMGKYHPHG+AAIY + ++AQ++++R L++G GNFGS+DGD AA RYTE Sbjct: 68 SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + A LL D+ KDTVD+RPNYD S +EP VL AR PN+L+NG GIAVGMATNIP H Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+V G IDNPDI ++ LM+ I GPDFPTG ++ GI+ AY TGRG+I R Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILE-ARGIRQAYETGRGTIRTRAR 246 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ G + IVVTEIPYQVNKA ++EKIAELVR+K++ I DLRDESDR+G R+VIE Sbjct: 247 YEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L++ + +VILN+L+R+T ++ F + M++L +P L +++ +V R+EV+ RRT Sbjct: 307 LRKDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y LN A++R H+L GL IA+ NLDE++ +IR S + E AR EL R Sbjct: 367 TYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSR------------- 413 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE+Q AIL++RL +LTGL R + NE + + I + DIL+ Sbjct: 414 -------------FNLSEIQANAILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILAR 460 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R+L +IK++L ++ RRT I + E+ED I ++V+T+S+ GYVKR PL Sbjct: 461 PERVLSMIKEDLDDIEKRYGDNRRTEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPL 520 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR+Q+RGGKG S +R EDF D+ + S ++LFF++ G V+ + +++P S QA Sbjct: 521 DTYRSQKRGGKGVSATTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQA 580 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G L+N L L GE++TTI+ E +++ TK G +++ L F + +SG Sbjct: 581 KGMPLVNFLELRPGEKVTTIVGAREFNR---EHHLLMVTKKGIIKKTALKAFQNVRKSGL 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V + +++ G + F +R GR + GV+ I+L+K D Sbjct: 638 IAVNLREDDELVGVIRVKTGSKVMIANSRGISIMFDEKQVRSM-GRTAAGVKAINLSKDD 696 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + Sbjct: 697 YVVGL-----------------------------------------------------DR 703 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +L V+EKG+GKRT+ +F++ NR GKG++A ++++ N G LVA V+ D++ Sbjct: 704 YREGADVLLVTEKGYGKRTALSEFKLQNRGGKGLKAIEITRRN--GKLVAFQIVSKEDEL 761 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++++ +G +IR+ V +I R ++GV++ +++R+V V R + + D Sbjct: 762 VILTSEGNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFKIEKEED 812 >gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018] gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri] gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018] Length = 860 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 368/900 (40%), Positives = 546/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ + + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + + I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ D Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032] gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032] gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum ATCC 13032] gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum ATCC 13032] Length = 856 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 341/915 (37%), Positives = 522/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + + + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MSDD----NTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ + MG +HPHG+ AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 57 FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECR+ A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D +++NPD + M+ ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL A+ LDEV+ +IR SP P+ AR Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E Q AIL ++L RL L R I + Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + IL+S R I++ EL + ++ RR++I+ D+ +ED I R Sbjct: 450 ELAEIELEIADLKAILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++V+T++ GY KR + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L GE+I ++ + Y+V AT HG Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQLESYN---DFPYLVLATAHG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L D+ G IA+ L+ D ++ C +E+D+LL ++ GQ +RF + Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V + Sbjct: 687 RPM-GRATAGVKGMRFRDNDQLLSMSVVRDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT D+ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV+ V ++D+I ++ G ++R V +IR +SRAT GV + + + +++ Sbjct: 753 P--KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLA 810 Query: 894 VERIRESEIVDEAES 908 +++ E + AE+ Sbjct: 811 IDKNVEDQGEASAEA 825 >gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 811 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL ++ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ VS+ + G +V+V V++++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E +++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811 >gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis] Length = 854 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 342/902 (37%), Positives = 513/902 (56%), Gaps = 93/902 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSA-SSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATN P HNLGE+ + ++N + +A+ME ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + ++Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D+ RRTRIV + DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +Y +Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 574 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KLSDF G +A+ L DE++ C+ E+D+LL + Q +RF + + Sbjct: 631 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ + D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNEDDRLLSLNVVRP------------------------------ 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+ KRTS ++ + R GKGI Sbjct: 720 -----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + + G+LV V+D+ ++ ++ G +IR ++R A R TKGV + + A+ + +++ Sbjct: 757 R--KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIA 814 Query: 894 VE 895 + Sbjct: 815 IA 816 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 15/224 (6%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 DE L E+ ++ T+ G R + + R GV+G L + D V + Sbjct: 507 DEDLIAR----EDVVVTITETGYAKR-TKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVC 561 Query: 742 LHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 D + Y + + E I++ + Sbjct: 562 STHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAP 621 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +++ + G K++ DF SNRSG GI A ++ + LV + D ++LVS Sbjct: 622 YLVLATRNGLVKKSKLSDF-DSNRSG-GIVAINLREG---DELVGAVLCSAEDDLLLVSA 676 Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900 IR + +R RAT GV +D+R++S+ +R Sbjct: 677 NRQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVVRPD 720 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 94/285 (32%), Gaps = 72/285 (25%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKG 732 LD+ DE++++ +Q DI + G I I+ R R +L + Sbjct: 398 LDALDEVIALIRASQTVDI---ARAGLIELLDIDDIQAQAILDMQLR-----RLAALERQ 449 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 V +A + AD ++ + + R + + + + + ++ Sbjct: 450 KIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDED 509 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDND 851 L +E ++T++E G+ KRT + + R GKG++ + + +V F V + +D Sbjct: 510 LIAREDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGL----KQDDMVNHFFVCSTHD 565 Query: 852 QIILVSDKGTLIRVPVNEIRIAS------------------RATK--------------- 878 I+ + +G + R E+ AS R + Sbjct: 566 WILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVL 625 Query: 879 ---------------------GVVIFSTAKDERVVSVERIRESEI 902 G+V + + + +V + Sbjct: 626 ATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDD 670 >gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571] gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571] Length = 827 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 355/896 (39%), Positives = 536/896 (59%), Gaps = 86/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 Y+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NSYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 709 -----------ADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ I++++ G +IR ++ R+T GV + + D +V S+ + Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811 >gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 876 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 387/850 (45%), Positives = 547/850 (64%), Gaps = 18/850 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIVDAYKTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ ++R +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D YL+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + ILSS RL+ +I++EL VK++ RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLITQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E E + +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYE---ADKFVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ +NDI+L +K G+ VRF +R GR + GVR Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D+V+S+ IV H + D + + + + E N Sbjct: 722 GIKLAESDKVVSL-IVPHNEGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNG 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S + + ++F + ++ G RT + R+ +G+ ++ +V + Sbjct: 781 SVVGAVQAEDGDEF-MMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEDE---QVVGLQ 836 Query: 846 PVND-NDQII 854 +++ +++I Sbjct: 837 RIDEPEEELI 846 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 157/426 (36%), Gaps = 29/426 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ + H+L + + E + +++ ARR + + + Sbjct: 469 EHEKILEEYKALLDEIAELMHILSSSERLMEVIREELELVK--EQFSDARRTEITAASHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D++DLI D Y ++ + + R + R + + L + Sbjct: 527 IDMEDLITQEDVVVTLSHEGYVKY--QILSDYEAQRRGGKGKAATRMKEEDFIERLLVAN 584 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 + S + +K L + T R IV L E+E + Sbjct: 585 THDTILCFSSRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVREYEAD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 V + G VK+ PL+ + R G V +RDED + + I ++ FS G Sbjct: 643 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDEDTLIGVDITDGQNDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L + +++ +++ N V+ T++G Sbjct: 701 KVVRFSEEQVRGMGRTA---AGVRGIKLAESDKVVSLI------VPHNEGDVLTVTENGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ +R+ + + + ++ ++ ++ T G VR ++ + Sbjct: 752 GKRTELAEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITNGGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ +QV+ + + + + E ++ + + Sbjct: 812 -SRVGRNTQGVTLIRTAEDEQVVGLQRIDEPEEELIEDAELVEGDAVENTEQPAADTGSD 870 Query: 774 SLKNDS 779 Sbjct: 871 ESAEQE 876 >gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3] Length = 878 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E + + + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + Sbjct: 2 EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +K Y KCA GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDG Sbjct: 62 ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE R+ K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GI Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNL EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +RG + I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDE Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDE 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SD+ G R+V ELKR +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++ Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 AF+++++ RRT + L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 K L + ++ + + + LSE Q AI+++RL +LTGL RD + +EL + Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDILSS R+ IIK+E+ ++K++ RRT I +++ ED I E+ V+T Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPISGEVDIEDLIPEEECVLTY 540 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +++GY+KR P+ VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P GS Q+RG ++N+L L++GERI +M + N Y + TK+G ++R L Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 DF + ++G A+ L DEI + ++ I++ T LG + F IR GR + Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSM-GRLAA 716 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR I L + D ++ A V D Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILTV++KG+G+ ++ D+R+ NR G G++ + ++ G + Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + + +D +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E Sbjct: 783 GIRSIQTDDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842 Query: 903 VDEAESTE 910 D E + Sbjct: 843 ADIEEVEQ 850 >gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 811 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 360/894 (40%), Positives = 548/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 VFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ + RRT I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTTIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGG+G S + ++DF + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E S VVF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSSEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V VN+++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVNEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E +++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811 >gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A] gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. NATL1A] Length = 872 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 348/918 (37%), Positives = 537/918 (58%), Gaps = 73/918 (7%) Query: 1 MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG +A+I NP+++ LM II+GPDFPTG ILGR+G Sbjct: 181 NGSSGIAVGMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 IK Y +G+GSI +RGV+ IE DR+ +++TE+PYQ NKA ++E+IA++V +K+ Sbjct: 241 IKETYLSGKGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + IAD+RDESDR G R+V+EL+R + V+LN L++ T LQ+ FS NM+AL +P Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L +L+ F+ FR E + +RTKYLL KA R H+L+GL +A+ LDE++ +IR + + T Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 A+ +L + L+++Q+ AIL+++L RLT L D Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL+ + R+ I K EL +K++ +T RRT I++ +ED D Sbjct: 455 IRLEHEDLVKKIIDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P++ + A RG +G++G + E+ V + H S+L F Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ + + Y++ T Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVSSFD---DENYLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R LS F +I +G IA+ L+ D + V + +L+ +K G + F ++ Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR++ GV+ ++L GD ++SM ++ AD+ ++ + S Sbjct: 692 SELRPL-GRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESE----- 745 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++L S G GKR FR+ R+G G+RA Sbjct: 746 --------------------------GPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAI 779 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS++G ++R ++I SRA GV I ++ Sbjct: 780 KF--RKDGDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDK 837 Query: 891 VVSVERIRESEIVDEAES 908 + V + +I D+ E+ Sbjct: 838 LSEVVLVPPEQINDDDEN 855 >gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R] gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R] Length = 856 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 342/915 (37%), Positives = 523/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + + + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MSDD----NTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ + MG +HPHG+ AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 57 FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECR+ A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D +++NPD + M+ ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL A+ LDEV+ +IR SP P+ AR Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E Q AIL ++L RL L R I + Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+S R I++ EL + ++ RR++I+ D+ +ED I R Sbjct: 450 ELAEIELEIADLKDILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++V+T++ GY KR + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L GE+I ++ + Y+V AT HG Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQLESYN---DFPYLVLATAHG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L D+ G IA+ L+ D ++ C +E+D+LL ++ GQ +RF + Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V + Sbjct: 687 RPM-GRATAGVKGMRFRDNDQLLSMSVVRDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT D+ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV+ V ++D+I ++ G ++R V +IR +SRAT GV + + + +++ Sbjct: 753 P--KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLA 810 Query: 894 VERIRESEIVDEAES 908 +++ E + AE+ Sbjct: 811 IDKNVEDQGEASAEA 825 >gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] Length = 903 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 353/903 (39%), Positives = 514/903 (56%), Gaps = 91/903 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 I D ++ + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M G Sbjct: 34 PIERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGG 93 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 ++ Y KCAR+ G+VMG YHPHG++AIYDAL R+ QDWS+R L++GQGNFGS D Sbjct: 94 YRPDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDG 153 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTECR+ A ++ D+ +DTVDF PNYDG +P VL +R+PN+LVNG GIAV Sbjct: 154 AAAPRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAV 213 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNA 240 GMAT IP HNL EV +G + +P+I + L+E II+GPDFPTG++I+G GI++A Sbjct: 214 GMATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHRGIEDA 273 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R + ++E+ +R+ +VVT++PYQVN + KIA+LV++ +I IAD+ Sbjct: 274 YRTGRGSIIMRAIVNVEEIK-NRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIA 332 Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P L G ++ Sbjct: 333 DETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDDVPRTLPLDGFIR 392 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 +V + EV+ RRT + L KA H+L G A+ LDEV+ +IR S E AR L+Q Sbjct: 393 HWVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ 452 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + E Q +AIL ++L RL L R+ I+ + + Sbjct: 453 --------------------------LLDIDETQAQAILNMQLRRLAALERERIQQQHDE 486 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I E IL+S R I+ +EL + D+ RRT IV DM ED I ED+V Sbjct: 487 LQELIDEYQAILASEVRQREIVSEELQGIVDKYGDERRTEIVPFDGDMSMEDLIPEEDVV 546 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT++ GY KR +YR+QRRGGKG G +R ED V F +TH +LFF++LG VY Sbjct: 547 VTITRGGYAKRTRTDLYRSQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVY 606 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + LP GS ++G+ + N+L+ GE+I ++ + E++ Y+V AT+ G V++ Sbjct: 607 RAKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVLAIHDYEAAD---YLVLATRAGLVKK 663 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFA 717 +L D+ G IA+ L DE++ +D+LL ++ G VRF + +R Sbjct: 664 TRLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPM- 722 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GV G+ GD ++SM+ V Sbjct: 723 GRSTSGVTGMKFRPGDTLLSMSRVP----------------------------------- 747 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + + V E G KRT ++R+ R G GI+ +S+ + Sbjct: 748 ----------------AETDVDVFVVFENGLAKRTPVSEYRVQGRGGYGIQVAKLSE--K 789 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV V ND++++V +KG ++R V+E+R SR+T+GV + K + +V+V R Sbjct: 790 GGDLVGALTVTGNDEVMVVMEKGKIVRSRVDEVRHTSRSTQGVRFAAPDKGDAIVAVARN 849 Query: 898 RES 900 ES Sbjct: 850 AES 852 Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 11/259 (4%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 D +V + G VK+ L Y + R GG + DE L + +L Sbjct: 646 YEAADYLVLATRAGLVKKTRLRDYDSPRSGGLIAINLREGDELVGARLVAAA--DDLLLV 703 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + P R + + + G+ + ++ P + ++ V Sbjct: 704 SRKGMSVRFTATDSAL-RPMGRSTSGVTGMKFRPGDTLLSMSRVPAET----DVDVFVVF 758 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +S++ R G KL +++ T T +++++ + G+ VR Sbjct: 759 ENGLAKRTPVSEYRVQGRGGYGIQVAKLSEKGGDLVGALTVTGNDEVMVVMEKGKIVRSR 818 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R R++ GVR + KGD ++++A + + + +A I+ Sbjct: 819 VDEVRH-TSRSTQGVRFAAPDKGDAIVAVARNAESVTEEELEEVGDLEGTAPTSPITTVP 877 Query: 770 EEITSLKNDSSVEGNISEE 788 + S S + Sbjct: 878 STDGVPSDGSDEPTTESSD 896 >gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a] Length = 878 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E + + + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + Sbjct: 2 EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +K Y KCA GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDG Sbjct: 62 ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE R+ K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GI Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNL EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +RG + I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDE Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDE 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SD+ G R+V ELKR +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++ Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 AF+++++ RRT + L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 K L + ++ + + + LSE Q AI+++RL +LTGL RD + +EL + Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDILSS R+ IIK+E+ ++K++ RRT I +++ ED I E+ V+T Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTY 540 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +++GY+KR P+ VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P GS Q+RG ++N+L L++GERI +M + N Y + TK+G ++R L Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 DF + ++G A+ L DEI + ++ I++ T LG + F IR GR + Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAA 716 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR I L + D ++ A V D Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILTV++KG+G+ ++ D+R+ NR G G++ + ++ G + Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + + +D +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E Sbjct: 783 GIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842 Query: 903 VDEAESTE 910 D E + Sbjct: 843 ADIEEVEQ 850 >gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672] gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] Length = 864 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 353/926 (38%), Positives = 522/926 (56%), Gaps = 102/926 (11%) Query: 1 MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ EE + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MTDENTPVTPEEGGDVAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++ GN Sbjct: 61 LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP H L EV G ++NP+ + L++ I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHTLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +VA + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR G + + ++Q AILE++L RL L R Sbjct: 420 IAR--------------------------GGLRDLLAIDDIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E IL+S R GI+ +EL ++ ++ R+T+++ DM ED Sbjct: 454 KIVQEHDELQAKIDEYNGILASPVRQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVTV+ GY+KR YRAQ+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTVTRGGYIKRTRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I + E+ Y+V A Sbjct: 574 FTNKGRVYRAKAYELPEAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + ++D+LL +K Q + Sbjct: 631 TKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF + +R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTATDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRT+ ++R+ R G Sbjct: 731 ----------------------------------FVFTATDGGYAKRTAVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G+LV V + D+I+ ++ G +IR VNEIR R T GV + + Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910 K + VV + R E+ E + Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840 Score = 77.5 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 14/248 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + R++ +L +L S Sbjct: 625 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDLLLIS 684 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S +G+ + ++ +V AT Sbjct: 685 KKAQSIRFTATD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 737 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 738 GGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 797 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + IR GR+++GV+ I+L K D V+ +A A + +E + + + T+ Sbjct: 798 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDESGEGAAATGTD 856 Query: 771 EITSLKND 778 E + ++ Sbjct: 857 EGEAPSSE 864 >gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] Length = 811 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 356/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V++++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVSEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E +++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811 >gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916] gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916] Length = 878 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 353/919 (38%), Positives = 534/919 (58%), Gaps = 71/919 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPVGPGNGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNLGE+++G +A+I+NP+++ + L+ II GPDFPTG ILGR G Sbjct: 181 NGSAGIAVGMATNIPPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLTGRGSVTMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR + + T Sbjct: 361 TLRRMLQVFIDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L +R L+++Q AIL+++L RLT L D Sbjct: 421 ARQQLQERH--------------------------GLTDIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ GII++EL ++D RRT I+ +ED D Sbjct: 455 IRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRDRYPIERRTEILNIAAGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E ITT++ E ++ ++ T Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITTLLAVSEFS---DDSDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G ++R +LS F I +G IA+ L+ D + V + +L+ T+ G + F +S Sbjct: 632 SGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRQAVPGDSVLIGTRAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L GD ++SM ++ Sbjct: 692 EELRPL-GRTARGVRSMNLRDGDALVSMDVLP---------------------------- 722 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + + + +++ + ++L S G GKR FR+ R+G G+R Sbjct: 723 -VELADKVAQSSDDAADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGM 781 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 N+ LVA+ + ++++LVS+KG ++R + I SRA GV + K + Sbjct: 782 KF--RNQGDELVALRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDS 839 Query: 891 VVSVERIRESEIVDEAEST 909 ++ V + DE ++ Sbjct: 840 LLKVVLVPPQAESDEDDAD 858 Score = 61.0 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 23/261 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + + D +T + SVL Sbjct: 621 FSDDSDLLMLTSGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALTWVRQAVPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN---------------ILSLNQGERITTIMP 635 + G ++ L ARG +N L+ + Sbjct: 679 TRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADKVAQSSDDAAD 738 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQ 692 E ++ +V+ A+ G +R ++ F R+G MK + DE++++ Sbjct: 739 DDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVLGA 798 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++LL ++ G VR AI R + GVR L KGD ++ + +V ++ Sbjct: 799 GEELLLVSEKGVIVRTSADAI-PQQSRAATGVRLQKLDKGDSLLKVVLVPPQAESDEDDA 857 Query: 753 CYMKHMSAQRRLISGDTEEIT 773 + + E+ + Sbjct: 858 DATAPDTEAAEVPETSAEQDS 878 >gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 380/892 (42%), Positives = 536/892 (60%), Gaps = 86/892 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I +V+I ++M +YL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M QMG++ N+ Y KC Sbjct: 5 NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A GEV+ YHPHG+A++Y+AL RMAQ WS+R L+ GQGNFGS D DPPAA RYTE + Sbjct: 65 AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A LL D+ KDTVDF PNYD +EPVV AR PN+L+NG GIAVGMATNIP HN Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ DG + +I+NP+ + L I+RGPDFPTG +I GR GI+N YA GRG IVIR + Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRART 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HIE+ R I+ TE+PYQVNKA +++KIAEL R+KRI I+++RDESDRQG R+V+EL Sbjct: 245 HIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVEL 304 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ ILN L++YT++QS F+ NM+AL +P+ TL L+ ++ RE+V+ RRT+ Sbjct: 305 KRDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRRTQ 364 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA R H+L GL IA+ NLDEV+ IIR S R A ++L Sbjct: 365 FELRKAEARKHILEGLKIAMDNLDEVINIIRGS------------RRETAGLAEEL---- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T S Q RA+L++RLA L L R + +EL + I +LS Sbjct: 409 ---------QQTFGFSNEQARAVLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDI 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + + GII +L +K++ RRT I E + D +DED I E++VVT++ GY+KR+P Sbjct: 460 NEIRGIIMADLKELKEKFGDARRTEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPS 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQRRGG+G +G+ R++D V L + TH S+LFF+ G V++ +V+ LP S A Sbjct: 520 GTYRAQRRGGRGVTGMATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTA 579 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ LIN++S+ Q ER+T I+ P+ + ++V ATK G V++ +SDF + RSG Sbjct: 580 RGEHLINLISIEQRERVTAIVYVPKGHTHD---FLVVATKKGEVKKTAMSDFEVVRRSGL 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAM L+ DE++ + E D+LL T G +RF + +R A R S GVRGI L D Sbjct: 637 IAMNLEDDDELIGAKLVGPEADVLLITLHGHAIRFGVDQLRS-ASRTSGGVRGIRLTDDD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S+ V+ Sbjct: 696 TVVSLNAVIP-------------------------------------------------- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-Q 852 +L V+E G+GKRT ++ NR G G+ + V++ + G + + V + D Sbjct: 706 ---GGELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTE--KTGKVASARMVTEEDND 760 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++L+S G +IR V+ +R A RAT+GV + + A+D++VV+V + D Sbjct: 761 LMLISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAVAVANGKKTDD 812 >gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] Length = 812 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 359/884 (40%), Positives = 543/884 (61%), Gaps = 86/884 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G RVVIE Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I NE + IKE ++LS Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSD 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ I+K+ELL +KD+ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NSKIYEIMKKELLELKDKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE+++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K+ D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +++ ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801 >gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B'] Length = 874 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 354/902 (39%), Positives = 534/902 (59%), Gaps = 97/902 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I V I DEM+N Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 3 NTEFDKIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +Y K ARI G+ MGKYHPHG+A+IYDA+ R+AQ+++ R L++G GNFG+VDGD AA R Sbjct: 63 QYRKSARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K ++L D+ K+TVDFRPN+D S +EP VL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 IP HN+GEV+ + +IDN + + + LMEI+ GPDFPTG ILGR GI+ Sbjct: 183 IPPHNMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQ 242 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TG+G + IR + IE+ S + I++TEIPYQVNK+ ++EKIAELV+ K++ I + Sbjct: 243 AYRTGKGKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGI 302 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G R+VIEL+R +A++ILNQLY+++ LQ FS+NM+AL +P F L +L+ Sbjct: 303 RDESDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLE 362 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA--VANLDEVVRIIRFSPNPETARREL 417 A++ +++V+ RRT++ L+KA+ RAH++ G I +D V+ +IR S A+ +L Sbjct: 363 AYLDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKL 422 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 +++ LSE+Q +AI+++RL LTGL D + E Sbjct: 423 IEKI--------------------------GLSEIQAQAIMDMRLRVLTGLEHDKLTQEF 456 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 N L +I +L +LL +IK+EL+ V+++ PRR+ + +++ ED I E+ Sbjct: 457 NELXDKIAYLKSLLEHEDQLLKVIKEELIVVREKFTDPRRSELSLLDDEIDIEDLIDEEE 516 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT++H GY+KR PL Y+ Q+RGG+G GV +EDF+ LF S ++FF++ G Sbjct: 517 VVVTITHFGYIKRXPLVTYKEQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGR 576 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 YK K +++P S ARG A++N+L LN E+I+ + P ++E Y+ TK G + Sbjct: 577 AYKIKAYKIPEASRTARGLAIVNLLHLNVDEKISAVFPVKQNEH---ERYLTMITKKGLI 633 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ ++ F I + G IA+ + DE++ V T ++ I++ TK G + F IR Sbjct: 634 KKTNITAFNNIKKGGIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRP-T 692 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVR I+L+K D VIS I + Sbjct: 693 GRTAKGVRAINLSKEDYVISATIPKEGE-------------------------------- 720 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 IL ++ G GKRT +F+ R GKG+ V ++ Sbjct: 721 ---------------------QILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVD--DK 757 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA+ V+D++ +++++ +G +IR+ V++I R KGV + + VV +E++ Sbjct: 758 TGDVVAITSVSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDGIHVVCMEKV 817 Query: 898 RE 899 E Sbjct: 818 AE 819 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 15/268 (5%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E + ++ G +K+ ++ + ++GG + DE + ++ + ++ + Sbjct: 619 EHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQDADE--LVGVYETTDQDKIIIAT 676 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + + A+G IN+ + ++ ATK Sbjct: 677 KKGLGIMFEGKNIRPTGRTAKGVRAINLSKEDY---------VISATIPKEGEQILIATK 727 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPI 710 +G +R ++ +F R GK + D+ V T +D +L+ T G +R + Sbjct: 728 NGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVAITSVSDSNGLLMITSEGVIIRIKV 787 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I GR + GV+ I+L G V+ M V + +E + + + Sbjct: 788 SQISSL-GRYAKGVKLINLTDGIHVVCMEKVAEFIEESEELEELEELEELEELQEEVIEK 846 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798 + ++ + E +E + L+ ++ Sbjct: 847 LPNEILDNITNELIEAEIVVEVLEPPKE 874 >gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] Length = 863 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 347/903 (38%), Positives = 521/903 (57%), Gaps = 97/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + E I + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRR+L+ M Sbjct: 1 MSDD----NNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ + MG YHPHG+ AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 57 YDNGYRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECR+ A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D +++NPD D L+ ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDKG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A V+LN L++++ LQS F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP E AR Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARD 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + ++Q AILE++L RL L R+ I N Sbjct: 416 GLMS--------------------------LLDVDQIQADAILEMQLRRLAALEREKIVN 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 ELN L I + DIL+S R I++ EL + ++ RR++I+ D+ +ED I R Sbjct: 450 ELNELETIIADLKDILASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L ERI ++ E + Y+V AT G Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQTYE---DAPYLVLATAQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ +GDQ+++M++V + Sbjct: 687 RPM-GRATAGVKGMRFREGDQLLAMSVVRDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT ++ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V ++D+I ++ G +IR VN+IR +SRAT GV + + D +++ Sbjct: 753 P--KRGRLIGALAVEEDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLQDDVELLA 810 Query: 894 VER 896 +++ Sbjct: 811 IDK 813 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + AD + + + A R + E + S + + ++L +E + Sbjct: 454 LETIIADLKDILASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIARENVV 513 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDK 859 +T++ G+ KRT ++ R GKG+R ++ + +V F V+ D I+ ++ Sbjct: 514 VTITSTGYAKRTKVDAYKSQKRGGKGVRGAEL----KQDDIVRHFFVSSTHDWILFFTNF 569 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902 G + R+ E+ ASR +G + + + +ER+ V +I+ E Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQTYED 615 >gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ + + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + + I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ ++ D Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + + + E + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820 >gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 817 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 335/893 (37%), Positives = 520/893 (58%), Gaps = 84/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + ++I DEM++SY+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM Q+G+ N Sbjct: 2 NEGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++Y+ + RMAQ W+LR LI+GQGNFGS+D DPPAA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K + +L D+ K+TVD + N+D S +EP VL R PN+L+NG GIAVGMATNI Sbjct: 122 TEVRMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E + A I+N I ++ +ME I+ PDFPTG +I G G+K A+ TGRG IV+ Sbjct: 182 PPHNLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIYGYEGVKKAFYTGRGRIVL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+E+ R+ I+V EIPYQVNKA M+ + EL+RE ++ I +RDESDR G R+ Sbjct: 242 RAKVHLEEIQ-GRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LK+ + ++LN L++YTSLQ+ F+VN +AL KP + + +++ FV R++V++ Sbjct: 301 VYLLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQLNIKDLIQHFVDHRQDVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY L K +DR H L G + +LD+++ +I+ S + A L++ Sbjct: 361 RRTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIK----------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q+R+IL++RL LT L I+ E L +I ++ Sbjct: 410 ---------------MFKLSENQSRSILDMRLQNLTSLELKKIKKEYEELVKKIAYLKNV 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + IIK+ELL ++D+ RRT+I ++ ED I E +V+T+SH GY+KR Sbjct: 455 LIQHSIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS Y+ Q RGG G G R+ DF L I + H +LFF+ G + +V+ +P GS Sbjct: 515 TSLSEYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGS 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N++ L +++ + + ++ N YV+ T+ G +++ L ++ + Sbjct: 575 KISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + G A+ + D +L + + + K G+ +RF +R GRNS GVRGI+ Sbjct: 635 RKDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRA-TGRNSSGVRGIN 693 Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L+ D VI M V Sbjct: 694 LSISEDTVIGMICVE--------------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ ++L VSEKGFGKRT+ D+RI+NR GKGI+ ++++ + G+L+++ V Sbjct: 709 ------GQEKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQ--KTGSLISIKHV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + D ++++ G +IR+ V++IR+ R T+GV + + + + + VE++ ++ Sbjct: 761 TNQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVSQT 813 >gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica] Length = 879 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 363/919 (39%), Positives = 521/919 (56%), Gaps = 78/919 (8%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + S + + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G Sbjct: 1 MGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGN 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD Sbjct: 61 DWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K AH LL DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EV+DGC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGR Sbjct: 181 MATNIPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGR 240 Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 G I IR + IE RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD Sbjct: 241 GKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESD 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G R+VIE+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV Sbjct: 301 KDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EVV RRT + L KAR+RAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W Sbjct: 361 RREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWEL 420 Query: 425 SDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 ++ +++ D + +G YL+E Q +AIL+LRL +LTGL + + +E Sbjct: 421 GNVASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 480 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L I E L IL S RL+ +I++ELL++K + + RRT + E D+ ED I +E Sbjct: 481 YRELLTLIGELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADINIEDLINQE 540 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D+VVT+SH GYVK PLS Y AQRRGGKG+S + Sbjct: 541 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARI------------------------- 575 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + I L + + A++ Sbjct: 576 -----------------KEEDFIEKLLVANTHDTILCFSSRGRLYWMKVYQLPEASR--- 615 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISA 712 I + +DE ++ + + T G + + Sbjct: 616 ----------SARGRPIINLLPLEQDERITAILPVREYEDGLYVFMATASGTVKKTALQD 665 Query: 713 I-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R S G+ ++L GD++I V D + + + + + Sbjct: 666 FSRPR----SAGILAVNLNDGDELIG---VDLTDGSNEVMLFSAEGKVVRFEEDAVRAMG 718 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 T+ + + E ILTV+E G+GKRT+ ++ I +R+ +G+ + Sbjct: 719 RTATGVRGIKLNGKDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIK 778 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 VS+ N G +V V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+V Sbjct: 779 VSERN--GNVVGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKV 836 Query: 892 VSVERIRESEIVDEAESTE 910 V ++R+ E E ++ E Sbjct: 837 VGLQRVAEPEDDEDELVAE 855 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 67/426 (15%), Positives = 142/426 (33%), Gaps = 35/426 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + +L + + E + I+ N ARR + + Sbjct: 473 EHEKLLDEYRELLTLIGELLFILESPERLMEVIREELLAIKAQYN--DARRTELTENTAD 530 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y LS+ + + + D I L + Sbjct: 531 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTH 590 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + + ++++ R T I+ + Sbjct: 591 DTILCFSSRGRLYWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGL--- 647 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L + R G + DE DL V+ FS Sbjct: 648 ----YVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDL--TDGSNEVMLFS 701 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + + + A G + + LN +++ +++ ++ T+ Sbjct: 702 AEGKVVRFEEDAVRAMGRTATG---VRGIKLNGKDKVVSLI------IPRGEGEILTVTE 752 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +++ +R+ + + + + + + I++ T G VR + Sbjct: 753 NGYGKRTAENEYPIKSRATQGVISIKVSERNGNVVGAIQVEPTDQIMMITDAGTLVRTRV 812 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S + GRN+ GV I A+ ++V+ + V + D DE + + Sbjct: 813 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDELVAEGGGLENNNTNSPDADS 871 Query: 771 EITSLK 776 S Sbjct: 872 GRESAD 877 >gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus] Length = 878 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 378/843 (44%), Positives = 530/843 (62%), Gaps = 17/843 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFP A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L GERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GVR Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ LA DQV+S+ + + + + T V Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++ +++ G RT + R+ +G+ ++ ++V + Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836 Query: 846 PVN 848 ++ Sbjct: 837 RID 839 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R A + + + Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DI D+ +LI + Y+ + Q + E + G +++E + + Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L + E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A+ + V+ + + + + A + + Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAAD 870 Query: 774 SLKNDSSV 781 + Sbjct: 871 DAEEGKEE 878 >gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] Length = 887 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 388/861 (45%), Positives = 547/861 (63%), Gaps = 29/861 (3%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D YL+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLITQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E + +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYT---EDKFVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714 + +G IA+ L D ++ V+ + DI+L + G+ VRF S +R Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRGI LA+GD+VIS+ IV H D D + + Sbjct: 723 GM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQG 780 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + E N + + ++F + ++ G RT + R+ +G+ ++ Sbjct: 781 VVSIKVSERNGRVVGAVQAEDGDEF-MMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTTE 839 Query: 835 INEIGALVAVFPVND-NDQII 854 + +V + +++ +++I Sbjct: 840 GEK---VVGLQRIDEPEEELI 857 Score = 71.4 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 101/258 (39%), Gaps = 20/258 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + R G V +R+ D + + + ++ F Sbjct: 639 YTEDKFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDVTDGDCDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARG--------KALINILSLNQGERITTIMPFPEDESSWN 644 S+ G V + + A+G A + + L +G+++ +++ N Sbjct: 697 SAFGKVVRFYESPVIDAEGNAKGGVRGMGRTAAGVRGIKLAEGDKVISLI------VPHN 750 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTK 701 + V+ T++G +R +L+++ +R+ + + + ++ ++ ++ T Sbjct: 751 DGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGRVVGAVQAEDGDEFMMITN 810 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G VR +S + GRN+ GV I +G++V+ + + + + E ++ + + Sbjct: 811 AGTLVRTRVSEV-SRVGRNTQGVTLIRTTEGEKVVGLQRIDEPEEELIEDAELVEGEAVE 869 Query: 762 RRLISGDTEEITSLKNDS 779 Sbjct: 870 NTDQPATDTSSDDSTEQE 887 >gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707] Length = 860 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 352/896 (39%), Positives = 527/896 (58%), Gaps = 87/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ I V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G +N Sbjct: 2 EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KCAR G+++GKYHPHG++++Y+ L R+AQ W++R L++GQGNFGS+DGD PAA R Sbjct: 62 PTRKCARAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ +TVDF+ N+DG F+EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 + HNL E ++ C+A ID +I +D LM+ ++ PDFPTG VI G G+K A+ TGRG I Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIRG + IE+ E+IV+ EIPYQV K+ M+ KIA+LV EK+I I+D+ DES +G Sbjct: 242 VIRGKADIEEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL +P L ++ FV R +V Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVHGRPRLLNLKDLIGHFVDHRHDV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S A LM+ Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAI+++RL +LT L D +++E N L I Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS + + +I++E + D+ RR+ IV D+ ED EDMV+T+SHLGY+ Sbjct: 455 LFLSDINMRMELIQEECREIIDKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G RDEDFV ++ + H +++ F++ G VY +V+ +P Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665 GS ++G+ + N+L L++ R+T + + D+ N Y+VFAT+ G +++ L+ + Sbjct: 575 GSKSSKGRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHY 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++G A+ L D+++SV +I L + G+CVRF +R GR + GVR Sbjct: 635 ANPRKTGVRAINLRGDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVR 693 Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 GI L D+V+ M + Sbjct: 694 GIRLDDDPNDKVVGMVV------------------------------------------- 710 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 LK ++ IL +SEKG+GKR+ D+RI+ R KG++ +V+ ++ G L+ Sbjct: 711 -------HRLKNSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVT--DKTGQLID 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 + V D+D I++++ G IR+ + ++R+ RAT+GV + K + + S+ + Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVV 817 Score = 71.0 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 56/430 (13%), Positives = 147/430 (34%), Gaps = 25/430 (5%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 + ++ N+ ++R L + E+++ + + + + D+ Sbjct: 438 KLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIDKYGDERRSEIVYASEDLNPED 497 Query: 432 DLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-- 485 D+ S LSE +T+ + + D + ++ Sbjct: 498 FYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMML 557 Query: 486 -------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L + + + ++ D + R T + D++ + + Sbjct: 558 FTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYL 617 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G +K+ L+ Y R+ G + +R +D V + + + + + + G Sbjct: 618 VFA-TEQGLIKKTLLAHYANPRKTG--VRAINLRGDDQVVSVALSNGNCEIFLANRNGRC 674 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + + A G I L + +++ ++ ++ ++ ++ G + Sbjct: 675 VRFNEQEVRPMGRTATGVRGI-RLDDDPNDKVVGMV---VHRLKNSDETILVISEKGYGK 730 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R+ + D+ R K ++ D+ + + +++I++ K G +R + +RV Sbjct: 731 RSLIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIRLSMEQVRV 790 Query: 716 FAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV+ I L K D++ S+ V+ + + + ++ D + Sbjct: 791 M-GRATQGVKMIDLNKRSDEIASICNVVAEEEEPELLDEADLDDPSEFVPQEEDLQGSDP 849 Query: 775 LKNDSSVEGN 784 E Sbjct: 850 DDELEGSEDQ 859 >gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] Length = 855 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 353/912 (38%), Positives = 522/912 (57%), Gaps = 102/912 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KC Sbjct: 2 RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC+ Sbjct: 62 ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 122 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV G +++P+ + L++ I+GPDFPTGA+++GR GI+ AY TGRGSI + Sbjct: 182 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V +E+ R+ +VVTE+P+Q N + +KIA+LV++ ++ IAD+RDE S R G R Sbjct: 242 RAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+ Sbjct: 301 LVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 361 VRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM----------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G + + E+Q AILE++L RL L I E + L +I E + Sbjct: 410 ---------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNE 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S ++ I+ +EL ++ D+ RR+++V DM ED I ED+VVT+S GYVK Sbjct: 455 ILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 515 RTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG+ + N+L+ E+I I+ + E+ Y++ ATK G V++ L D+ Sbjct: 575 GRDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPR 631 Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722 G IA+ L DE++ E + E+D+LL +K Q +RF + +R GR + Sbjct: 632 SGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATS 690 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+S +GD+++SM +V Sbjct: 691 GVKGMSFREGDELLSMNVVRPGT------------------------------------- 713 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 F+ T ++ G+ KRT ++R+ R G GI+A + + + G+LV Sbjct: 714 ----------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGSLV 755 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898 V + D+I+ ++ G +IR VNE+R R T GV + + K + VV + R Sbjct: 756 GALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGR 815 Query: 899 ESEIVDEAESTE 910 E+E VD A+ + Sbjct: 816 EAEEVDGADDVD 827 >gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985] gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985] Length = 826 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 355/917 (38%), Positives = 509/917 (55%), Gaps = 98/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + I V + EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDPTDPT--PSRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+ AIYDAL RMAQ WSLR L++GQGNFGS Sbjct: 59 QDQGFRPDRGYVKSARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A ++ D+ ++TVDF PNYDG +EP VL AR PN+LVNG G Sbjct: 119 GNDGAAAMRYTEARLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D + L+A+ EI++GPDFPT +I+G G Sbjct: 179 GIAVGMATNIPPHNLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGTDG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 + +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN M+ IAE VR+ +I I Sbjct: 239 VHDAYTTGRGSIRMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+A+ P L Sbjct: 299 SAIDDETSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 IL+ ++A + EV+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 359 QILRLYIAHQIEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL ++L RL L R I + Sbjct: 419 GLME--------------------------LLDVDEIQADAILAMQLRRLAALERQKIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + I + DIL+ R I++ EL + D RRTRI+ ++ DED I R Sbjct: 453 ELAEIEEAIADYQDILARPERQRAIVRDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAR 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 513 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+L E+I ++ E ++ Y+V ATK G Sbjct: 573 GRVYRIKAYELPETSRAARGQHVANLLALQTDEKIAQVIHLQTYE---DSPYLVLATKRG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 +++KL++F G IA+ L DE++ C+ ++D+LL ++ GQ +RF + + Sbjct: 630 LTKKSKLTEFDSNRSGGLIAVNLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ + DQ+++M +V Sbjct: 690 RPM-GRATSGVLGMRFNEDDQLLAMNVVRDG----------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 720 ------------------------AYLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYD 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + + +R+++ Sbjct: 756 RR--RGGLVGAVIVDDDTELYAITQGGGVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIA 813 Query: 894 VERIRESEIVDEAESTE 910 V R E D AE E Sbjct: 814 VARNDE----DSAEVAE 826 >gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] Length = 869 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 356/897 (39%), Positives = 526/897 (58%), Gaps = 88/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ E I + I EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M +MG +++ Sbjct: 2 EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K A+ GEV+ KYHPHG++A+Y L R+AQ W+LR L++GQGNFGSVDGD PAA R Sbjct: 62 PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF+ N+D + QEP VL R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 + HNL E +DGCVA ID +++ LM I+ PDFPTG I G G+K A+ TGRG I Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIYGYAGVKEAFETGRGRI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307 V+R + IE S RE I+VTEIPYQVNKA ++ IA+LV E+RI I+++ DES + G Sbjct: 242 VLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIE+KR A+A V+LN L++ T LQS F+VN +AL +P L ++ FV R + Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RR+ + L KAR+RAH+L GL IAV N+DEV+ IIR S N + A+ L +R Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE+Q RAI+++RL LTGL D +R E + L I+ Sbjct: 415 -------------------FELSELQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L+ ++K ELL VK++ PRRT IV + ED ++M++T+SHLGY Sbjct: 456 EGLLADDNLLMQVVKDELLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR PL +R+Q RGG G G R+EDF+ ++ S H ++L F++ G + V+++P Sbjct: 516 IKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPF---PEDESSWNNLYVVFATKHGNVRRNKLSD 664 G+ +G+A+ NIL++ +RIT + +D + Y+VFAT G +++ L Sbjct: 576 EGAKSTKGRAIQNILNIEADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + G A+KL+ D ++SV + +ILL K G+ +RFP S +R GR + GV Sbjct: 636 YSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSM-GRVTTGV 694 Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 RG+ L +G D ++ M + + Sbjct: 695 RGMILDEGGEDAIVGMVALKDPEK------------------------------------ 718 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + IL VSE G+GKRT+ +RI+NR GKG++ +++ + G+LV Sbjct: 719 ---------------ETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITE--KTGSLV 761 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 V D +++++ G IR+P++ I + RAT+GV + + + + + SV + Sbjct: 762 DFRSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASVCIVA 818 Score = 83.3 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 118/323 (36%), Gaps = 28/323 (8%) Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---VFATKHG 655 + + + L + L + I N + +H Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361 Query: 656 NVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 VRR + D + I + +D+ DE++ + ++ + RF +S Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQ---EAQERLRERFELS 418 Query: 712 AIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLI 765 ++ + + + L + D++ + ++ + + + + Sbjct: 419 ELQ------ARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDE 472 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + +E + + + E ++ ++ I+T+S G+ KRT DFR R G Sbjct: 473 LLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGV 532 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVI 882 G + + + + I + + + + ++L + KG +PV +I +++TKG I Sbjct: 533 GSKGSTTREEDFIEYIYSA---SMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNI 589 Query: 883 FSTAKDERVVSVERIRESEIVDE 905 + D+R+ + RI++ + E Sbjct: 590 LNIEADDRITACIRIKKLQKDPE 612 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 13/280 (4%) Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 R T + +D + + +V + G +K+ PL Y R G + + + Sbjct: 595 DDRITACIRIKKLQKDPEFVASHYLVFA-TLQGMIKKTPLEAYSNPRSKG--VFAIKLNE 651 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 D V + + + T +L + G + P ++ G+ + + E Sbjct: 652 GDSVVSVRLTNGKTEILLANKGGRAIR-----FPESKVRSMGRVTTGVRGMILDEGGEDA 706 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETC 690 + ++ ++ G +R L + G M++ + ++ + Sbjct: 707 IVGMVALKDPEKETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKTGSLVDFRSV 766 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYD 749 T E D+++ + G +R P+S+I V GR + GV+ I+L+ GD++ S+ IV +A+ + Sbjct: 767 TDELDLMIINRSGVAIRMPMSSINVI-GRATQGVKLINLSSRGDEIASVCIVASEEAEAE 825 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + L S D E E Sbjct: 826 KALLKEGASDEEVNLTSEIDSNDYEEIEDDLQEQQSKTEE 865 >gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902] gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902] Length = 886 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 354/918 (38%), Positives = 540/918 (58%), Gaps = 66/918 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + ++ I + +EM SY+ YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RL+ LL+D+ +TVD+ N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG +A+I+NP+I L+ +I GPDFPTG ILGR G Sbjct: 181 NGSAGIAVGMATNIPPHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y +GRGS+ +RGV+ +E DR+ +++T +PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +L R LS VQ AIL+++L RLT L D Sbjct: 421 ARTQLQDRH--------------------------GLSAVQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+LG+I++EL+ +++ PRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRERHSVPRRTEILDLAGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ E ++ ++ T Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ +K G + F ++ Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L KGD ++SM ++ AD Sbjct: 692 GELRPL-GRTARGVRSMNLRKGDSLVSMDVLPAELAD----------------------- 727 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +I + +D+ + + + + ++L S G GKR FR+ R+G G+RA Sbjct: 728 QIAASADDAGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 787 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + LV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 788 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDR 845 Query: 891 VVSVERI-RESEIVDEAE 907 + V + E+E D+ + Sbjct: 846 LADVVLVPPEAETDDDGD 863 Score = 57.9 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + D D +T + + SVL Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEDGDALTWVRLSIPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERIT------------------- 631 S G ++ L ARG +N+ + + Sbjct: 679 SKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADDAGD 738 Query: 632 --TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILS 686 E + +V+ A+ G +R ++ F R+G AMK + DE++ Sbjct: 739 GDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVG 798 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 + ++LL ++ G VR AI R + GVR L KGD++ + +V Sbjct: 799 LRVLGAGEELLLVSEKGVIVRTGADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAE 857 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITS 774 D+ ++ Q + +E Sbjct: 858 TDDDGDQANGDVADQPQASGESSEPSAE 885 >gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701] gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701] Length = 866 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 351/918 (38%), Positives = 536/918 (58%), Gaps = 68/918 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MADPTGP--GESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV Sbjct: 59 YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D DPPAA RYTE RLQ LL+D+ +TVD+ N+DGS QEP V+ AR P++L+NG Sbjct: 119 DNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGS 178 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNL E+++G +A+I +P++D AL+ +I GPDFPTG ILGR GI+ Sbjct: 179 SGIAVGMATNIPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRE 238 Query: 240 AYATGRGSIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 Y TGRGS+ +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ Sbjct: 239 TYTTGRGSVTMRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDG 298 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+D+RDESDR G R+VIEL+R A V+LN L++ T LQS FS +M+AL +P TL Sbjct: 299 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLR 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ F+ FR E + RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + TAR Sbjct: 359 RMLQVFLEFRIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARL 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +L +R LSE+Q+ AIL+++L RLT L D IR Sbjct: 419 QLQERH--------------------------GLSEIQSDAILQMQLRRLTALEADKIRL 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I + DIL R R+LG+I+ EL+ +++ + RRT I++ +ED D I Sbjct: 453 EHEDLVTKIADYKDILGRRERVLGLIEAELIQLRERYPSERRTEILDLEGGLEDIDLIAN 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L FS Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY +R+P+GS A+G ++ +L + + E+IT+++ + +++ ++ T G Sbjct: 573 GVVYAVPAYRVPVGSRGAKGTPVVQLLPIPREEQITSLVAVSAFD---DDVQLLMLTSGG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++R +LS F I +G IA+ L+ D + + +L+ + G + F ++ + Sbjct: 630 YIKRTRLSAFANIRSNGLIAISLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGEL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVR ++L GD+++SM ++ AD ++ Sbjct: 690 RPL-GRTARGVRAMALRPGDELVSMDVLPAELADQVASSSASENEEEDAPEAGE------ 742 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L S G GKR FR+ R+G G+RA Sbjct: 743 --------------------SSDGPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKF- 781 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + LV + + ++++LVS++G ++R+ + I SRA GV + +R+ Sbjct: 782 -RRDGDVLVGLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSE 840 Query: 894 VERIRE-SEIVDEAESTE 910 V + + D A++ E Sbjct: 841 VVLVPPAPDEEDLADTAE 858 >gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779] gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 827 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 358/898 (39%), Positives = 535/898 (59%), Gaps = 91/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ +YL YA++VI+ RA+PD RDGLKPV RRIL+ M + G+ N +Y KCA Sbjct: 6 VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ KYHPHG+A++YDAL R+AQ W++R L++GQGNFGSVDGD AA RYTE RL Sbjct: 66 GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A LL D+ +DTV+F PN+DG +QEP+VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ DG ++DNPD ++ L++ I GPDFPTG ILG GI +AY++GRG I+IR +H Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + IVVTE+PYQVNKA ++E+IAELV++KRI I D+RDESDR G R+VI LK Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN L++YTS+Q+ F NM+AL +P +L L+ ++ R+ V+ RRT Sbjct: 306 QDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ RAH+L GL IA+ LDEV+ IR S ETAR LM+ Sbjct: 366 EHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMK-------------- 411 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE+Q++AILE++L RL GL R I +E + I + DILS Sbjct: 412 ------------NFKLSELQSQAILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSK 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ IIK ++ +K++ RR+RI+ + D+ ED I +++VTV+ GY+K++P Sbjct: 460 PERVFKIIKDDVAELKEKYGDVRRSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR Q RGG+G G+ +++D V L + +T +LFF++ G VY+ KV +P S Sbjct: 520 GDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE +T+++ P+ + + Y+V T G ++R KLS++ + +G Sbjct: 580 AKGLPLVNLISLEPGELVTSLIAVPDFD---DGEYLVMTTVKGRIKRTKLSEYSSVRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD+ DE+ V+T + DIL+TT+ GQ +RF + +R GR + GV GI ++ Sbjct: 637 LIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRPM-GRPASGVIGIKMSAK 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQV+ M +V Sbjct: 696 DQVVGMDLVRP------------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +L ++ G GKRT D+ + R+ +G+ + + + A + D+D Sbjct: 707 ----DSQLLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGDI---IAAALVLTDSDI 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++ G ++R ++I R T+GV + + K + V +V E + D+++ ++ Sbjct: 760 VTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAVS--AEPPVDDKSDDSD 815 >gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] Length = 857 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 352/918 (38%), Positives = 517/918 (56%), Gaps = 98/918 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 + + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G Sbjct: 2 TTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 61 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP Sbjct: 62 YRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDP 121 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAV Sbjct: 122 AAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAV 181 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNA 240 GMATNIP HNL EV G ++N + + L++ I+GPDFPTGA+++GR GI+ A Sbjct: 182 GMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEA 241 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+R Sbjct: 242 YRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVR 300 Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE S R G R+VI LKR A A V+LN LY++T LQS F NM+AL P +L ++ Sbjct: 301 DETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIR 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 361 HWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM- 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + E+Q AILE++L RL L R I E + Sbjct: 420 -------------------------DLLEIDEIQANAILEMQLRRLAALERQKIVREHDE 454 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I E +IL+S R GI+ +EL ++ ++ R+T+++ DM ED I ED+V Sbjct: 455 LQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIV 514 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTV+ GY+KR YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY Sbjct: 515 VTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVY 574 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + LP ARG+ + N+L+ E I I + E+ Y+V ATK G V++ Sbjct: 575 RAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKK 631 Query: 660 NKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 L D+ G IA+ L DE++ E + E+D+LL +K Q +RF S Sbjct: 632 TPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDT 691 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+S +GD+++SM +V Sbjct: 692 LRPM-GRATSGVKGMSFREGDELLSMNVVR------------------------------ 720 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 F+ T ++ G+ KRTS ++R+ R G GI+A + Sbjct: 721 -----------------------AGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKI 757 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + + G+LV V ++D+I+ ++ G +IR VN +R R T GV + + K + VV Sbjct: 758 VE--DRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKRDAVV 815 Query: 893 SVERIRESEIVDEAESTE 910 + R E+ E + Sbjct: 816 GIARNAEAGREAEEVDGD 833 Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + + + +L +L S Sbjct: 618 PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLIS 677 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S +G+ + ++ +V AT Sbjct: 678 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVRA------GTFVFTATD 730 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 731 GGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRV 790 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR+++GV+ I+L K D V+ +A A + +E + + T+ Sbjct: 791 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 849 Query: 771 EITSLKND 778 E + + Sbjct: 850 EGEAPSAE 857 >gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303] gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9303] Length = 875 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 353/919 (38%), Positives = 535/919 (58%), Gaps = 71/919 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + SD E + I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVD+ N+DGS QEP+VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG A+I NP++ LM +I GPDFPTG ILGR+G Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV++IE DR+ +++TE+PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + T Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L + L+E+Q AIL+++L RLT L D Sbjct: 421 ARQQLQEHH--------------------------GLTEIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I DIL R R+ +I+ EL ++++ PRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLREKHCLPRRTEILDLGGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ + ++ +++ T Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFD---DDTHLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710 K G ++R LS F +I +G IA+ L+ D + V + +L+ ++ G + F + Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L GD ++SM ++ AD + Sbjct: 692 EELRPL-GRTARGVRAMNLRGGDSLVSMDVLPVELADQVAK------------------- 731 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 S+E + + + ++L S G GKR FR+ R+G G+RA Sbjct: 732 ---------SLEDDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAI 782 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 E LV + + ++++LVS++G ++R ++I SRA GV + +R Sbjct: 783 KF--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDR 840 Query: 891 VVSVERI-RESEIVDEAES 908 + V + +SE D+ + Sbjct: 841 LSEVVLVPPDSEDQDQPDD 859 >gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313] gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9313] Length = 875 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 355/919 (38%), Positives = 536/919 (58%), Gaps = 71/919 (7%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + SD E + I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVD+ N+DGS QEP+VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E++DG A+I NP++ LM +I GPDFPTG ILGR+G Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y TGRGS+ +RGV++IE DR+ +++TE+PYQ NKAA++E+IAE+V +K+ Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + T Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L + L+E+Q AIL+++L RLT L D Sbjct: 421 ARQQLQEHH--------------------------GLTEIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I DIL R R+ G+I+ EL ++++ PRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLREKHCLPRRTEILDLGGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV ++ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++ + ++ +++ T Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFD---DDTHLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710 K G ++R LS F +I +G IA+ L+ D + V + +L+ ++ G + F + Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L GD ++SM ++ AD + Sbjct: 692 EELRPL-GRTARGVRAMNLRGGDSLVSMDVLPVELADQVAK------------------- 731 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 S+E + E + ++L S G GKR FR+ R+G G+RA Sbjct: 732 ---------SLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAI 782 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 E LV + + ++++LVS++G ++R ++I SRA GV + +R Sbjct: 783 KF--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDR 840 Query: 891 VVSVERI-RESEIVDEAES 908 + V + +SE D+ + Sbjct: 841 LSEVVLVPPDSEDQDQPDD 859 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 19/235 (8%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISMAIVLHAD 745 E ++L T+ G R P+S R + G G + V IS Sbjct: 514 LIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFISCNDHDTLL 572 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 D + Y + E I+ + +L +++ Sbjct: 573 LFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFDDDTHLLMLTK 632 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 GF KRTS F G+ A + + AL V D +++ S G I Sbjct: 633 GGFIKRTSLSAFSKIR--SNGLIAIGLEEG---DALTWVRLAVPGDSVLIASRAGMTIHF 687 Query: 866 PV--NEIRIASRATKGVVIFSTAKDERVVSVER--------IRESEIVDEAESTE 910 + E+R R +GV + + +VS++ + +S D+ ES E Sbjct: 688 RLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELADQVAKSLEDDQDESGE 742 >gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Streptomyces coelicolor gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)] gi|1093585|prf||2104262E DNA gyrase Length = 864 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 354/926 (38%), Positives = 519/926 (56%), Gaps = 102/926 (11%) Query: 1 MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ E + V + EMQ SYL YA++VI+ RA+P +RDGLKPVHRR+ Sbjct: 1 MTDENTPVTTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G ++N + + L++ I+GPDFPTGA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM + + E+Q AILE++L RL L R Sbjct: 420 IARGGLM--------------------------DLLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E +IL+S R GI+ +EL ++ ++ R+T+++ DM ED Sbjct: 454 KIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVTV+ GY+KR YRAQ+RGGKG G ++++D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I + E+ Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L DE++ E + E+D+LL +K Q + Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF S +R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTASDDTLRPM-GRATSGVKGMSFREGDELLSMNVVR---------------------- 727 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 F+ T ++ G+ KRTS ++R+ R G Sbjct: 728 -------------------------------AGTFVFTATDGGYAKRTSVDEYRVQGRGG 756 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+A + + + G+LV V ++D+I+ ++ G +IR VN +R R T GV + + Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLIN 814 Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910 K + VV + R E+ E + Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840 Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + + + +L +L S Sbjct: 625 PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLIS 684 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + P R + + +S +G+ + ++ +V AT Sbjct: 685 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVRA------GTFVFTATD 737 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ ++ + ++IL T G +R + Sbjct: 738 GGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRV 797 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR+++GV+ I+L K D V+ +A A + +E + + T+ Sbjct: 798 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 856 Query: 771 EITSLKND 778 E + + Sbjct: 857 EGEAPSAE 864 >gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4] gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4] Length = 946 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 32 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 92 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHL Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S +RG+ ++N+L L+ GERIT I+P E + Y++ AT +G V++ L+ + Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 688 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNPVL 748 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRGI L +G +V+S+ + A + Sbjct: 749 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTE 807 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 S + S Q E I+ +S+KG RT + I Sbjct: 808 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 865 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853 R+ +G+ + + +V + ++ D D++ Sbjct: 866 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 899 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 154/419 (36%), Gaps = 31/419 (7%) Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDS 437 + + + GL + + + ++ +I+ A +R+ ++ D+ ++ + + Sbjct: 502 EYEELLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINE 561 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + + + ++ Q + + + G +++E + + D + S Sbjct: 562 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 621 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGYVK 549 + ++ + T R IV L + E ED + + + G VK Sbjct: 622 GKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVK 681 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL--- 606 + L+ Y R G V ++D D + + I + ++ FS+ G V + K Sbjct: 682 KTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSV 739 Query: 607 ----------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G+PQ K + + +G ++ + ++ T+ Sbjct: 740 LDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTE 799 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +LS++ +R+ K + + + + ++I+L + G VR P Sbjct: 800 NGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPA 859 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GRN+ GV I A ++V+ + + D DE M + G++ Sbjct: 860 NGV-SIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENGMPIVPVVAEGNS 917 >gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] Length = 922 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 366/873 (41%), Positives = 530/873 (60%), Gaps = 85/873 (9%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 85 EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL + A LL Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EP VL AR+PN+LVNG GIAVGMATNIP HNL E V+ Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 A+ID+P+I D LM+II GPDFPTGAVI+G GI AY TGRGSI +R +HIE T R Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIESTKTGR 324 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPYQVNK ++ EKIA+LV EKR+ I+D+RDES +G R+VIELK+G V+ Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQVV 384 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY++TSLQS F +N +AL P+ +L +L ++A + +VV RRT++ L KAR R Sbjct: 385 LNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKARAR 444 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G IA+ ++DEV+ IIR S A L +R Sbjct: 445 AHILEGYLIALDHIDEVISIIRSSETDAEASARLTER----------------------- 481 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 ++ QT AILE++L RLTGL R I EL++L I+ D+L+ + ++L +IK+ Sbjct: 482 ---FGFTDRQTAAILEMKLRRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKE 538 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + + PRRT I E +++ ED I EDMVVT++H GYVKR+P++ YR+Q+RGG Sbjct: 539 EMREIARKFGDPRRTEIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGG 598 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG SGV ++++D + ++FI STH VLFFS+ G VY+ KV LP+GS QARG A++N+L Sbjct: 599 KGVSGVNLKEDDVIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLP 658 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 +GE+I +++ + ++ +++FAT+ G V++ +S + + R G IA+ L + D Sbjct: 659 FEEGEKIASVISTRDFP---DDEFLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDA 715 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +L V ++ I++ T G+ + F +R GR++ GVRGI L +V+ M Sbjct: 716 LLDVRRVRPQDKIIMATTEGKAIMFEQEQVRA-TGRDTSGVRGIDLRGSARVLGM----- 769 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 E+ + + + Sbjct: 770 ------------------------------------------------EITNGQGDLFVI 781 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E G+GKRT D+ +R G+G+ +++ G L A+ V ++ +++ T+I Sbjct: 782 TENGYGKRTPVRDYPTQHRGGQGVYTIQMTQR--KGMLAAMKTVGPQHELFIITKGATVI 839 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 RV EI RAT+GV + + A + V++V R Sbjct: 840 RVKTGEISQTGRATQGVKMMNVADGDLVIAVAR 872 Score = 62.5 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 58/433 (13%), Positives = 140/433 (32%), Gaps = 41/433 (9%) Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+ R L + V++ RE+ ++ + + + Sbjct: 511 ELDALRQAIEYYEDLLAHKEKVLAVIK---------EEMREIARKFGDPRRTEIREAEKE 561 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + +D M ++ T + + +A R +L + ++S Sbjct: 562 LDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAEMFIASTH 621 Query: 496 RLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDED-----------CIVREDMVV 540 + + ++ R+ R + + E+ ++ ++ Sbjct: 622 EFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASVISTRDFPDDEFLM 681 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VK+ +S Y RR G + ++ +D + D+ V ++ ++ G K Sbjct: 682 FATRSGMVKKTVMSAYDRSRRDG--IIAINLKTDDALLDVRRVRPQDKIIMATTEG---K 736 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 ++ R + + + L R E + + T++G +R Sbjct: 737 AIMFEQEQVRATGRDTSGVRGIDLRGSAR------VLGMEITNGQGDLFVITENGYGKRT 790 Query: 661 KLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + D+ +R I M + +++T ++++ + TK +R I Sbjct: 791 PVRDYPTQHRGGQGVYTIQMTQRKG-MLAAMKTVGPQHELFIITKGATVIRVKTGEI-SQ 848 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GV+ +++A GD VI++A + A + + + S E Sbjct: 849 TGRATQGVKMMNVADGDLVIAVARMTAAKRRPKPSMAAEGQEALEIPSGSSADEVECVDI 908 Query: 777 NDSSVEGNISEER 789 + + Sbjct: 909 GGTDDVPEELLDE 921 >gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] Length = 876 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 380/843 (45%), Positives = 531/843 (62%), Gaps = 17/843 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL SV++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK +INIL L +GERIT I+P E ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVSEFS---PEKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GVR Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ LA DQV+S+ + + + + T V Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++ +++ G RT + R+ +G+ + +V + Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTADDE---NVVGLQ 836 Query: 846 PVN 848 ++ Sbjct: 837 RID 839 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 149/426 (34%), Gaps = 29/426 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL++ + H+L + + E + +R + A Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELESVREAFGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G ++ E + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R I+ L E E E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVSEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITDGQSDIMLFSKAG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L+++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A + V+ + + + + + + E Sbjct: 812 -SQVGRNTQGVTLIRTADDENVVGLQRIDEVEEVELAEGEEIADGEQATTSEAPEASEQQ 870 Query: 774 SLKNDS 779 ++ Sbjct: 871 GDDTEA 876 >gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 854 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 433/847 (51%), Positives = 598/847 (70%), Gaps = 5/847 (0%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G + K Y K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS Sbjct: 1 MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG Sbjct: 61 IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 G+AVGMATNIP+HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++ Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRS 180 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A+ATGRGSIV++G +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++ Sbjct: 181 AFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEI 240 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVI+L+R A A ILNQ+ T L+S FSVN + LN +P +L I++ Sbjct: 241 RDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIE 300 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ FR+EV++RRT++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ Sbjct: 301 AFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLN 360 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + W S+ + I + S + DG L+E+Q +AIL+++L RLTGL +D + EL+S Sbjct: 361 KEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSS 420 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + IKE + L S +L+ IK L +K+ PR+T I E D+E ED I +EDMV Sbjct: 421 MINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMV 480 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TV+ GY+KRV LS YR QRRGGKG+ G +++ED +T+LF+ +THTSVLFFS++G VY Sbjct: 481 ITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVY 540 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV++LP+ P ARG+AL+NI L +GE IT IMP P + N +VF T +GN+RR Sbjct: 541 RLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSEN--DENQNIVFTTAYGNIRR 598 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 N L+DF I +GKIA+KLD D+++SV+ C + + + L+T+ G+ +RF +S +R F R Sbjct: 599 NSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSR 658 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS GVRGI LAK D VISM I+ + + Y+K A+R L + I S + Sbjct: 659 NSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKT 717 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + I E +L + E+FILT++E GFGKRTS+Y++RI+NR G GI + N G Sbjct: 718 LNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--G 775 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +VA FPV D I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I + Sbjct: 776 NVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIED 835 Query: 900 SEIVDEA 906 + +++ Sbjct: 836 PDSTEDS 842 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D V + G R +S R R+ D V + + + + G Sbjct: 633 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 682 Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 KE ++P+ L + I + + N +++ T Sbjct: 683 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 742 Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R ++ NR G + +++ Q ++I+L T G+ +R Sbjct: 743 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 ++ IR AGR++ GV ++V+S+A + D+ D +S+Q Sbjct: 803 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 853 >gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7] gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7] Length = 944 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 32 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 92 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHL Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S +RG+ ++N+L L+ GERIT I+P E + Y++ AT +G V++ L+ + Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 688 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 748 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRGI L +G +V+S+ + A + Sbjct: 749 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTE 807 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 S + S Q E I+ +S+KG RT + I Sbjct: 808 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 865 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853 R+ +G+ + + +V + ++ D D++ Sbjct: 866 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 899 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 67/419 (15%), Positives = 154/419 (36%), Gaps = 31/419 (7%) Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDS 437 + + + GL + + + ++ +I+ A +R+ ++ D+ ++ + + Sbjct: 502 EYEELLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINE 561 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + + + ++ Q + + + G +++E + + D + S Sbjct: 562 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 621 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGYVK 549 + ++ + T R IV L + E ED + + + G VK Sbjct: 622 GKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVK 681 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL--- 606 + L+ Y R G V ++D D + + I + ++ FS+ G V + K Sbjct: 682 KTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAV 739 Query: 607 ----------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G+PQ K + + +G ++ + ++ T+ Sbjct: 740 LDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTE 799 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R +LS++ +R+ K + + + + ++I+L + G VR P Sbjct: 800 NGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPA 859 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GRN+ GV I A ++V+ + + D DE M + GD+ Sbjct: 860 NGV-SIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENGMPIVPVVAEGDS 917 >gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] Length = 825 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 381/898 (42%), Positives = 547/898 (60%), Gaps = 88/898 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV Y Sbjct: 9 NQDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYK 68 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 69 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 128 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ +AA +L D+ KDTVDF NYD + QEP +L +R PN+L+NG GIAVGMATNIP Sbjct: 129 ARMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPP 188 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H E++D V +IDNP LD +++ + GPDFPTG +I G++GI+ AY +GRG I IR Sbjct: 189 HRTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIYGKSGIREAYESGRGRIKIRA 248 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I IA++RDESDR+G RVVI Sbjct: 249 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVI 307 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RR Sbjct: 308 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKVFTLLELLDLFLSHRKSVVIRR 367 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+ RAH+L GL IA+ N+D +V +IR S +P+ A+ L+ + Sbjct: 368 TIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQ------------ 415 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AIL++RL RLTGL RD I NE +L EI+ IL Sbjct: 416 --------------FSLSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILR 461 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S S L GIIK+ELL +K++ T R T I E ++ ED I E +VVT+SH GYVKRVP Sbjct: 462 SESLLNGIIKEELLEIKEKFSTKRLTTIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVP 521 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y Q RGGKG+ D+DF+ F+ TH ++LF + G +Y KV+++P S Sbjct: 522 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRT 581 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N+++L E+I + + +N + F TK+G ++R LS+F I G Sbjct: 582 AIGKAVVNLINLAPDEKIMATITTKDFN---SNKSLAFFTKNGIIKRTNLSEFKNIRSVG 638 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD D +++ + + + +IL+ T G CVRF + +R GR + GV I Sbjct: 639 VRAINLDENDALVTAKIISSDIKEILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKM 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V Sbjct: 698 PKDYVIGATVV------------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + IL+VSEKG GKRT ++RI+NR GKG+ A ++ + G LV + V++N Sbjct: 709 ---ASENEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTP--KTGKLVGIVNVDEN 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R + E D+ Sbjct: 764 MDLMVLTSSGKMIRVDMQSIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEEQDDENE 820 >gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] Length = 882 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 348/914 (38%), Positives = 532/914 (58%), Gaps = 90/914 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + I I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M Sbjct: 4 MGDDIFD-QTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSM 62 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +++ +K + KCARI G+ MGKYHPHG+++IY AL MAQ WS+R +L++G GNFGS+ Sbjct: 63 IELNNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSI 122 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K + ++ D+ KDTVDF PN+D + +EPVVL AR PN+LVNG Sbjct: 123 DGDGAAAMRYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTT 182 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235 GIAVGMATNIP HNL EV+ CV +IDN D+ ++ I++GPDFPTG +ILGR Sbjct: 183 GIAVGMATNIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIILGRA 242 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GI+ AY TGRG I +R V+ IE + +I+V+EIPY VNKA M+EKIA++V++KR+ Sbjct: 243 GIEEAYRTGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDG 302 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I LRDE+ R+G RVVIEL++ + +V+LN+LY+ T LQ + V M+AL G +P +L Sbjct: 303 ITALRDETSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALVGNQPRIMSLK 362 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L ++ +E+VV RRT++ LNKA++R H+L GL A+ N+DEV++IIR S + A+ Sbjct: 363 EVLDHYILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKE 422 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM G LSE Q +AI+++RL LTGL R+ + Sbjct: 423 QLM--------------------------GRFALSEAQAQAIVDMRLRALTGLEREKLEA 456 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I IL+ +LL ++K+E+ + D+ RRT+I D+ ED I Sbjct: 457 EHRELMEKIAYFKGILADHKKLLTVVKEEMQEIADKYGDDRRTQIGFDDDDISAEDLIPV 516 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ++T + GY+KR+ +RAQ RGGKG G+ +D++ +L +H + FF++ Sbjct: 517 THPIITFTKFGYIKRMSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNK 576 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + +P S ARG A++N+L L E IT+++P + Y+ AT+ G Sbjct: 577 GRVYRLKAYEIPEASRTARGTAIVNLLQLMPDETITSMIPVV--PGEDEDKYLFMATQRG 634 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ +L ++ I +SG A+ L D ++ V+ ++++L T+ GQCVRF S +R Sbjct: 635 IVKKTRLREYENIRKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVR- 693 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR+++GV GI+L+ D VI+M + ++ Sbjct: 694 GTGRSTMGVIGINLSDQDCVIAMQLASQGES----------------------------- 724 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ VS++G GK T + +F +R GKG++ +++ Sbjct: 725 ------------------------LVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE- 759 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G LV V V+ ++Q++L++ GT+IR+ + + + R T GV + D+ V S+ Sbjct: 760 -KTGDLVGVKSVDKDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASIS 818 Query: 896 RIRESEIVDEAEST 909 ++ ++ E E T Sbjct: 819 VVQREDLPLEDEDT 832 >gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231] gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002] gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19] Length = 854 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 341/903 (37%), Positives = 511/903 (56%), Gaps = 95/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ ++ E I + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDDLL--GGEGFDRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS Sbjct: 59 YDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECRL A ++ D+ ++TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D +++NPD D A M ++GPDFPT I+G G Sbjct: 179 GIAVGMATNIPPHNLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGSQG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV+ IE+ R+ IV+TE+PYQVN M+ IAE VR+ ++ I Sbjct: 239 INDAYTTGRGSIRMRGVTSIEEEGS-RQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DES DR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT++ L +A RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 358 QMLRYYVTHQIEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARS 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ + + E+Q AIL ++L RL L R I + Sbjct: 418 GLI--------------------------DLLTIDEIQADAILAMQLRRLAALERQKIID 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + IEI + DIL+ R I++ EL + + RRT+I+ D+ +ED I R Sbjct: 452 ELAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIAR 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++QRRGGKG G ++ +D V F+ STH +LFF++ Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNF 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L ERI ++ E + Y+V AT G Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQLQSYE---DAPYLVLATAQG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++LSD+ G IA+ L D+++ C+ ++++LL ++ GQ +RF + Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M +V Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTVVR------------------------------- 716 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + ++L + G+GKRTS ++ R G G+ + Sbjct: 717 ----------------------SDAYLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYT 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+A V+++DQI ++ G +IR VN+IR +SRAT GV + + +++ Sbjct: 755 P--KRGKLIAAVVVDEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLA 812 Query: 894 VER 896 ++R Sbjct: 813 IDR 815 Score = 83.7 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 +A + ADY + + + A R + + + + + ++L +E Sbjct: 453 LAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIARE 512 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856 ++T++ G+ KRT ++ R GKG+R ++ + +V F V + +D I+ Sbjct: 513 NVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWILFF 568 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902 ++ G + R+ E+ ASR +G + + + +ER+ V +++ E Sbjct: 569 TNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQLQSYED 617 >gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] Length = 813 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 357/896 (39%), Positives = 554/896 (61%), Gaps = 86/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A ++NP+I + L +II+GPDFPTGA ILG+ GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR ++A+++LN LY+ T L++ F + +AL P+ L ++K +V +++VV Sbjct: 303 IVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + + ++ ++ Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L++ Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L+ +I++E+L +K++ RRT+IV + + E+ I +ED++++++H GY+K Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY K + +P Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q+RG+A+IN++SL+ E+IT IM +VF T++G +++ F I Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLN---EKSQLVFQTENGKIKKTDAELFTNIQ 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ L+ D ++S+ + DI++TTK G ++F S IR GRN+ GVR I L Sbjct: 634 RNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRAIRL 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+SM IV Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +++ V+ GFGK+TS +F NR GKG+R +++ + +VA P N Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK--DVVATLPANL 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 +D I++VS KG +IR+ +I R T GV + + ++ +VSV + E + Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDYIVSVTKYYEETSEE 813 >gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247] gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247] Length = 827 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 348/914 (38%), Positives = 507/914 (55%), Gaps = 94/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E + V + EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ Sbjct: 1 MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ E MG YHPHG+ AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 61 YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A +L D+ ++TVDF PNYDG EP VL AR PN+L+NG G Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D + +++PD L A ME I+GPDFPT A+I+G G Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V IE+ +VVTE+PYQVN +++ IAE V E ++ I Sbjct: 241 IRDAYTTGRGSIRMRSVVDIEENK-GTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+V+ L+R A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 SRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S N E AR Sbjct: 360 QMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL ++L RL+ L R I + Sbjct: 420 GLM--------------------------DLLEIDEIQADAILAMQLRRLSALERQKIVD 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I++ EL V D+ RRT+I+ D+ DED I R Sbjct: 454 ELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKYGDDRRTKIIAADGDVTDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+QRRGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIQLKSY---QDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL DF G A+ L DE++ + C+ ++D+LL ++ GQ +RF + Sbjct: 631 LVKKSKLEDFDSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D ++S+ +V Sbjct: 691 RPM-GRQTSGVQGMRFNADDTLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT D+ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V+D+ ++ ++ G +IR ++R A R TKGV + + + V++ Sbjct: 757 RR--RGELIGALIVDDDSELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVIA 814 Query: 894 VERIRESEIVDEAE 907 + R + E D E Sbjct: 815 IARNAD-EPDDAGE 827 >gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] Length = 837 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 359/886 (40%), Positives = 541/886 (61%), Gaps = 86/886 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K Sbjct: 2 SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL++G GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + ++ L+DD+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDNP++ LME I+GPDFPTG +I G+ GI++AY TGRG + +RG Sbjct: 182 NLGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I++ EIPYQ+NKA ++E+IA+LV++KR+ I DLRDESDR G RVVIE Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G ++ILN+LY+YT LQ+ F + M+AL P+ L IL+ ++ R EVV RRT Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 K+ L+KA RAH+L G IA+ N+D ++ IIR S + AR L+++ Sbjct: 362 KFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 S+VQ RAIL+++L RLTGL R I E + I E +ILS Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSH 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ IIK+ELL +K++ + RRT I +++ ED I E++++T+++ GYVKR+ + Sbjct: 456 DSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGGKG + ++DFV + S +++ F++ G V+ KV+ +P S Q+ Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK + NI+ + + E+I ++ + + VVF TK G +++ L +F IN SG Sbjct: 576 RGKLMSNIIRIREDEKIRAVIKTRDFS---KDNEVVFVTKEGLIKKTNLDEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+KL D+I+ V + + + TK G +RF +R GR+++GV+ I+L Sbjct: 633 KAIKLKEDDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD ++S ++ D Sbjct: 692 GDSIVSALLIKDEDGS-------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILTV+E G+GKRT ++ + RSGKG+ + + GA+V+V PV + + Sbjct: 708 --------ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++ ++ G +IR+P++ I + RAT+GV+I E+VVS+ R+ Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRV 803 >gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102] gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102] Length = 875 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 357/909 (39%), Positives = 525/909 (57%), Gaps = 73/909 (8%) Query: 1 MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M + + + + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL Sbjct: 1 MADSVGPGGGGPGDSDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF Sbjct: 61 YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 GSVD DPPAA RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+ Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 NG GIAVGMATNIP HNL E+++G +A+I+NPD+ L+ +I GPDFPTG ILGR G Sbjct: 181 NGSAGIAVGMATNIPPHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 I+ Y GRGSI +RGV+ IE DR+ +++TE+PYQ NKA ++E+IAELV +K+ Sbjct: 241 IRETYLGGRGSITMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKK 300 Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 + I+D+RDESDR G R+V+EL+R A V+LN L++ T+LQS FS M+AL +P Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 TL +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ T Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR++L R LS++Q AIL+++L RLT L D Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 IR E L +I + DIL R R+ GII+ EL + D TPRRT I++ +ED D Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGGGLEDIDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E VV V+ GY+KR+P+S + A RG +G++G + E+ V + H ++L F Sbjct: 515 IANERSVVLVTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G Y +R+P S A+G ++ +L + + E IT+++P E +++ ++ T Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLIPVSEFN---DDMDLLMLT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R +LS F I +G IA+ L+ D + V + +L+ + G + F +S Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVR ++L +GD ++SM ++ Sbjct: 692 EELRPL-GRTARGVRSMNLREGDGLVSMDVLP---------------------------- 722 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 D + +E ++L S G GKR FR+ R+G G+RA Sbjct: 723 ---VELADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 779 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + ALV + + ++++LVS+KG ++R + I SRA GV + K +R Sbjct: 780 KFRTTD--DALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 837 Query: 891 VVSVERIRE 899 + V + Sbjct: 838 LSEVVLVPP 846 Score = 71.7 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 17/185 (9%) Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V ADY + + + + + + + + + Sbjct: 455 IRLEHEDLV-------TKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGG 507 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L E+ ++ V+E G+ KR +F ++R +G ++ V +F Sbjct: 508 GLEDIDLIANERSVVLVTETGYLKRMPVSEFEATSRGTRG----KAGTRSQGEEAVKLFI 563 Query: 847 -VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 ND+D ++L SD+G +P + SR KG V + ++E + S+ I SE Sbjct: 564 SCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL--IPVSEF 621 Query: 903 VDEAE 907 D+ + Sbjct: 622 NDDMD 626 Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 21/257 (8%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + + D + + + SVL Sbjct: 621 FNDDMDLLMLTRGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALRWVRLAVPGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-------------ILSLNQGERITTIMPFP 637 S+ G ++ L ARG +N + L + Sbjct: 679 SNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVELADRIAQSAEDDEE 738 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQEN 694 +D SS + +V+ A+ G +R ++ F R+G AMK + D ++ + Sbjct: 739 DDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDALVGLRVLGAGE 798 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 ++LL ++ G VR AI R + GVR L KGD++ + +V D Sbjct: 799 EVLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRLSEVVLVPPEAEDDTTATDD 857 Query: 755 MKHMSAQRRLISGDTEE 771 + ++ Sbjct: 858 TNADDTETSDTESSAQD 874 >gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1] Length = 868 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 369/831 (44%), Positives = 520/831 (62%), Gaps = 14/831 (1%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G NK Y K Sbjct: 6 KEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+G +A+ID P++D+DALM+ I GPDFPT +I G GI+ AY TGRG + IR Sbjct: 186 NLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGIINGVGGIQLAYRTGRGRVRIRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ IE Sbjct: 246 ADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG SA+V+LN LY+ T L+S+F +NMVAL +P+ L IL+AF+ R EVV RRT Sbjct: 306 VKRGESAEVVLNNLYQQTQLESVFGINMVALVDGRPQLVNLKQILEAFLRHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ A+ ++ R+W + L+ Sbjct: 366 IFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAA 425 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + +G L+EVQ + ILE+RL RLTGL ++ + E L I+ Sbjct: 426 TGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIR 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 ++IL LL +I+ EL +K E RR+ I D++ D I ED+VVT+SH Sbjct: 486 ALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR P+S YRAQ+RGG+GRS +DEDF+ L++V+TH ++L F+S G V+ V + Sbjct: 546 GYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFWLPVHQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP ARG+ +IN + L +GE++ ++P E +V FAT++G V++ L++F Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYA---EGFFVFFATRNGTVKKTPLTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 GKIA+ LD D ++ V D++L G+ VRF S +R GR + GVR Sbjct: 663 AFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAM-GRTATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+G++V+S+ +V + D + + E N Sbjct: 722 GIRLAEGEEVVSL-VVPDGEGDILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNG 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +L + + +L +S+ G RT + + R+ +G+ + + Sbjct: 781 RLVGAIQLSEQHE-VLLISDGGTLVRTRASEISQVGRNTQGVTLIRLGEGE 830 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 6/153 (3%) Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E + + + R + + S + + + +L E ++T+S G+ Sbjct: 489 EILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHAGYA 548 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KR +R R G+G A + I L + VN +D ++ + G + +PV++ Sbjct: 549 KRQPVSAYRAQKRGGRGRSAAATKDEDFIDRL---WLVNTHDTLLTFTSSGKVFWLPVHQ 605 Query: 870 IRIASRATKGVVIFS---TAKDERVVSVERIRE 899 + A +G I + + E+V +V +RE Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVRE 638 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 135/415 (32%), Gaps = 39/415 (9%) Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 + R + L + + + ++++IR N A S+I+ + +D Sbjct: 475 EEYRQLLETIRALIEILEDPEVLLQVIRTELNELKAEFG----DDRRSEIRASEEDLDIL 530 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSR 496 D + LS ++ R R+ + + + L ++++ Sbjct: 531 DLIAPEDVVVTLS--HAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDT 588 Query: 497 LLGIIKQELLSVKDELD------TPRRTRIVEGLLDMEDEDCIVRED--------MVVTV 542 LL + R I+ + E E V Sbjct: 589 LLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGFFVFFA 648 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ PL+ + + GK + D L V+ F+S G + Sbjct: 649 TRNGTVKKTPLTEFAFRLARGKIAINLDDGDNLVGVAL--TDGGRDVMLFASNGKAVRFD 706 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + L +GE ++ A++ G +R L Sbjct: 707 ESEVRAMGRTATG---VRGIRLAEGEE------VVSLVVPDGEGDILTASERGYGKRTPL 757 Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ + R + + + ++ ++++++LL + G VR S I GR Sbjct: 758 SEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRTRASEI-SQVGR 816 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 N+ GV I L +G+ S+ V DA DE A + G S Sbjct: 817 NTQGVTLIRLGEGE---SLQAVERVDASLDEAAEEGVAAGAPEQPSDGAEATPAS 868 >gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 811 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 357/894 (39%), Positives = 546/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI +AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIDAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIETLIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYDIMKKELLELKEKYGDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGGKG S + ++D+ + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E VVF TK G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---VVFITKKGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+++ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKTREDDDLIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E +++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811 >gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] Length = 812 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 355/884 (40%), Positives = 543/884 (61%), Gaps = 86/884 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY++T LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I NE + IKE ++L+ Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ I+K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NSKIYEIMKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE+++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K+ D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +++ ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801 >gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 813 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 358/896 (39%), Positives = 555/896 (61%), Gaps = 86/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A ++NP+I + L +II+GPDFPTGA ILG+ GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A+A+++LN LY+ T L++ F + +AL P+ L ++K +V +++VV Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + + ++ ++ Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L++ Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L+ +I++E+L +K++ RRT+IV + + E+ I +ED++++++H GY+K Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY K + +P Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q+RG+A+IN++SL+ E+IT IM +VF T++G +++ F I Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLN---EKSQLVFQTENGKIKKTDAELFTNIQ 633 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ L++ D ++S+ + DI++TTK G ++F S IR GRN+ GVR I L Sbjct: 634 RNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRAIRL 692 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+SM IV Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +++ V+ GFGK+TS +F NR GKG+R +++ + +VA P N Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK--DVVATLPANL 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 +D I++VS KG +IR+ +I R T GV + + ++ +VSV + E + Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEETSEE 813 >gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805] gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805] Length = 876 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 358/903 (39%), Positives = 525/903 (58%), Gaps = 68/903 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KC Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137 Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 L+ LL+D+ +TVD+ N+DGS QEP VL +R P +L+NG GIAVGMATNIP H Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++ G +A+I+NP++ LM +I GPDFPTG ILGRTGIK Y +GRGS+ +RGV Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 257 Query: 254 SHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 + IE DR+ +++T +PYQ NKAAM+E+IAE+V +K++ I+D+RDESDR G R Sbjct: 258 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+EL+R A V+LN LY+ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 318 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 377 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR +L +R Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERH-------- 429 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSEVQ AIL+++L RLT L D IR E L +I + D Sbjct: 430 ------------------GLSEVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKD 471 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL R R+ GII+ EL ++D PRRT I++ ++D D I E VV ++ GY+K Sbjct: 472 ILGRRERVFGIIQDELAQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 531 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P Sbjct: 532 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 591 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+G ++ +L + + E IT+++ E ++ ++ T+ G ++R +LS F I Sbjct: 592 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 648 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727 +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + GVR + Sbjct: 649 SNGLIAIGLEEGDALTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSM 707 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L GD ++SM ++ AD + + S Sbjct: 708 NLRDGDALVSMDVLPVELADRVAQSGDDDSDDDEAGAAS--------------------- 746 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++L S G GKR FR+ R+G G+RA + ALV + + Sbjct: 747 --------DGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTDADALVGLRVL 796 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++++LVS+KG ++R + I SRA GV + K +R+ V + D+A Sbjct: 797 GAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAESDDAT 856 Query: 908 STE 910 E Sbjct: 857 EGE 859 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 24/259 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + + D +T + + + SVL Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVSGDSVLIG 678 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-----------ILSLNQGERITTI----MP 635 S G ++ L ARG +N +L + +R+ Sbjct: 679 SRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSGDDDSD 738 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQ 692 E ++ + +V+ A+ G +R ++ F R+G AMK + D ++ + Sbjct: 739 DDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADALVGLRVLGA 798 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 ++LL ++ G VR AI R + GVR L KGD++ S +++ +A+ D+ Sbjct: 799 GEEVLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRL-SEVVMVPPEAESDDAT 856 Query: 753 CYMKHMSAQRRLISGDTEE 771 +S + ++ Sbjct: 857 EGEGEEVTAETAVSAEPQD 875 >gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] Length = 860 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 352/917 (38%), Positives = 550/917 (59%), Gaps = 93/917 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + D+ I V + M++ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M Sbjct: 11 MPDDVF--DKTTTDRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 68 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +++ +K + KCARI G+ MGKYHPHG+++IY AL MAQ WS+R L++G GNFGSV Sbjct: 69 IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSV 128 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K + ++ D+ KDTVDF PN+D + +EP +L +RYPN+LVNG Sbjct: 129 DGDGAAAMRYTEARLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTT 188 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235 GIAVGMATNIP HNL EVV+ V +IDN + +++ +++II+ PDFPTG +ILG Sbjct: 189 GIAVGMATNIPPHNLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTR 248 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 G + AY TGRG +++R V++IE + +IVVTE+PY VNKA M+ KIAELV+ K++ Sbjct: 249 GAEEAYRTGRGKVIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDG 308 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I LRDESDR+G RVVIEL+ + +++LN+LY++T +Q F + M+AL +P+ ++ Sbjct: 309 ITALRDESDREGMRVVIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVNNEPKVLSIT 368 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +LK ++ +EEVV RRTKY LNKA +R H+L GL IA+ N+DEV++IIR S A+ Sbjct: 369 EMLKHYIKHQEEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKE 428 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM G L++VQ +AI+++RL LTGL RD + Sbjct: 429 QLM--------------------------GRFGLTDVQAQAIVDMRLRTLTGLERDKLEQ 462 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I+E IL+ R LLG+I+ E+ + ++ R+++I + D++ ED I Sbjct: 463 EHADLLKKIEELKAILADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPN 522 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + V+ ++ LGY+KR+ + ++AQ RGGKG G+ D D+V D+ + +TH V+FF++ Sbjct: 523 VNTVIAMTSLGYIKRMSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNT 582 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K +++P S +RG A++N+L L GE+I+ ++P E + TK G Sbjct: 583 GRVYRLKAYQIPEASRTSRGMAIVNLLQLAPGEKISAMIPVKGFE--DEEKCLFMVTKKG 640 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ ++DF + ++G A+ L DE++ V+T T++ ++ L TK G C+ F S +R Sbjct: 641 TVKKTPITDFSNVRKTGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVR- 699 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R+S+GVRG+ L D+++ M + D+ Sbjct: 700 ITSRSSIGVRGMMLDDTDEIVGMQLNTQGDS----------------------------- 730 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L VSEKG+GKRT+ +F R GKG++ +++ Sbjct: 731 ------------------------LLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITE- 765 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G ++ V VND+++I+++++ G +I++ ++EI I R T GV + + K V + Sbjct: 766 -KTGNVIGVKAVNDDNEIMMITNAGIIIQLRMDEITIHGRVTSGVKMINLDKGVTVAKIA 824 Query: 896 RIRE--SEIVDEAESTE 910 ++RE S+ + ++ + Sbjct: 825 KVREKISDGDHDIDNID 841 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 17/248 (6%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 E + V+ G VK+ P++ + R+ G + + +RD+D + ++ V+ V Sbjct: 626 FEDEEKCLFMVTKKGTVKKTPITDFSNVRKTG--LAAITLRDDDELIEVKTVTKDAEVFL 683 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 + G + I S + G + + + + ++ Sbjct: 684 VTKNGMCIHFDESDVRITSRSSIGVRGM---------MLDDTDEIVGMQLNTQGDSLLIV 734 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVR 707 ++ G +R L +F G +K E ++ V+ +N+I++ T G ++ Sbjct: 735 SEKGYGKRTTLDEFHSQ-FRGGKGVKCYKITEKTGNVIGVKAVNDDNEIMMITNAGIIIQ 793 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + I GR + GV+ I+L KG V +A V +D D I + +S + + Sbjct: 794 LRMDEI-TIHGRVTSGVKMINLDKGVTVAKIAKVREKISDGDHDIDNIDDVSEEVEEENI 852 Query: 768 DTEEITSL 775 T + Sbjct: 853 TTADDDEE 860 >gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1] gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1] Length = 839 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 343/894 (38%), Positives = 523/894 (58%), Gaps = 87/894 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + V+I +EM++SY+ YA++VI+GRAIPD+RDGLKPVHRR LF M +MG +K Y K Sbjct: 14 KVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKS 73 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R++L++GQGNFGSVDGD PAA RYTE R Sbjct: 74 ARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVR 133 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L++ A LL DL K+TV+F PN+D S QEP VL A+ PN+L+NG GIAVG+AT +P HN Sbjct: 134 LKREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHN 193 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV D +++PD + LM+I+ GPDFPTG +I+G GI+NAY +G+G + +RGV+ Sbjct: 194 LGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAYLSGQGKLTVRGVA 253 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I++ SG R QI++TEIPYQVNKA ++E IAELV+EKRI I+DLRDESD+ G R+VI+L Sbjct: 254 EIDE-SGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDL 312 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A +ILN LY++T+L+S F + A+ +P+ LI +++ FV R V+ RR++ Sbjct: 313 RKDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQFVRHRITVITRRSE 372 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA +R H+L GL A+ N+D V+ IR + + A+ L+ + Sbjct: 373 FDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAK-------------- 418 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E Q AIL+++L RL L + + +E L EI++ +++LSS Sbjct: 419 ------------FSLDEAQAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSE 466 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + I +EL ++++ RRT+I L ++ ED I + ++V ++H YVK + + Sbjct: 467 DNIRAEISRELQELREKYADKRRTQITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVD 526 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G G+ ++D D+V +F+ +TH +L F+S G Y +V+ +P GS Q++ Sbjct: 527 AYRVQGRGGRGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSK 586 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N+L L ER+T ++P E ++ + +F T+ G + + +F + +G Sbjct: 587 GKAIVNLLDLRSEERVTAVIPVQEFS---SDRFFLFLTERGMIIKIPQDEFSRPRSTGVN 643 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D ++ V +I++TTK GQ +RF I RN++GV G+ + D Sbjct: 644 AISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHEEQI-PLRHRNALGVIGMRMKDDDI 702 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V SM ++ Sbjct: 703 VTSMTVIEEG-------------------------------------------------- 712 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + +LT++ G+GKRT+ ++R R G+R + +V F ++II Sbjct: 713 ---KHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLK---RNDGIVTAFSAGPEEEII 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 L+S +G +IR V +I I R+T+GV I A +RVV V + E D ++ Sbjct: 767 LMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDISDD 820 >gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1] gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1] Length = 919 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 374/877 (42%), Positives = 531/877 (60%), Gaps = 46/877 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I +P + ++ LM+ I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG+ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S +RG+ ++N+L L GERIT I+P E + Y++ AT +G V++ L+ + Sbjct: 606 LPLASRTSRGRPIVNLLPLADGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRGI L +G +V+S+ + A + Sbjct: 723 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVPKDDGAILTVTENGYGKRTE 781 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 S + S Q E I+ +S+KG RT + I Sbjct: 782 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853 R+ +G+ + + +V + ++ D D++ Sbjct: 840 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 873 >gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11] Length = 811 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 359/894 (40%), Positives = 547/894 (61%), Gaps = 86/894 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I E + IKE ++L Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+K+ELL +K++ RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGGKG S + ++D+ + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ L NI++L++GE++ + E VVF TK+G +++ L +F IN SG Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFLPEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L K Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDMVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ V++ + G +V+V V++++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVNE--KTGKVVSVLEVSEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ ++ G +IR +NEI RAT+GV I A DE+V ++ +I++ E ++ Sbjct: 758 ELMCITSNGIVIRTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDLEN 811 >gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3] gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3] Length = 918 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S +RG+ ++N+L L+ GERIT I+P E + Y++ AT +G V++ L+ + Sbjct: 606 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNAVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRGI L +G +V+S+ + A + Sbjct: 723 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVPKGDGAILTVTENGYGKRTE 781 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 S + S Q E I+ +S+KG RT + I Sbjct: 782 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853 R+ +G+ + + +V + ++ D D++ Sbjct: 840 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 873 >gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] Length = 840 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 372/893 (41%), Positives = 541/893 (60%), Gaps = 87/893 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S ++ + V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M + + Sbjct: 1 MSDLFDDNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ ++YDAL RMAQD+S++ L++GQGNFGSVDGD Sbjct: 61 SHRSPYKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A LL DL KDTVDF PNYD S EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H L E++D V IDNP+ ++ +M+I++GPDFPTG +I GR GI +AY TGR Sbjct: 181 MATNIPPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIFGRKGITDAYTTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R +HIE+ G++E I++ E+P+QVNK+ ++E IA+LVR+K I I+++RDESDR Sbjct: 241 GRIKVRAKTHIEQ-KGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVV+ELKR A ++++LN L++ T +Q F + M+A++ +P+ F L+ + F+ R Sbjct: 300 EGIRVVMELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKEPKVFNLMELFDLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IAV N+DEV++IIR S + AR LM R Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSR----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q +AILE+RL RLTGL + I NEL L I Sbjct: 415 ---------------------FSLSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL S ++ II++EL+ + ++ TPRRT IV+ D++ ED I E MVVT++H Sbjct: 454 YLEGILKSEEKINQIIREELIEIGEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP+ +Y Q RGGKG++ V D+DF+ F +TH +++F + G +Y KV+R Sbjct: 514 GYIKRVPVKLYEKQHRGGKGKTAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYR 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + +VF T++G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQPDEKIMAIIPTTDFS---EEKGLVFFTRNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 I +G A+ LD DE++ + E + + TK G C+RF + R GR S GV Sbjct: 631 SNIRSNGVRAINLDENDELVEAKIVKPETKWLFVATKKGLCIRFKVEDAREI-GRVSRGV 689 Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 I GD V A + + + Sbjct: 690 TAIKFKIDGDYVCGAATLESEEDE------------------------------------ 713 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 IL +SEKG GKRT++ ++R NR+GKG+ + ++ ++ G +V Sbjct: 714 ----------------ILMLSEKGLGKRTTASEYREQNRAGKGVISMKLT--SKTGDVVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V V ++ ++ ++ G +IRV + IR A R T GV + S K ++VVS+ + Sbjct: 756 VVMVEEDKDLMCLTSVGKMIRVDMETIRKAGRNTSGVKVVSVEKKDKVVSMAK 808 >gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens] Length = 880 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 380/849 (44%), Positives = 534/849 (62%), Gaps = 20/849 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R + Sbjct: 187 LAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ + W+ ++ +++ Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL++VK+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ + +A + T V Sbjct: 723 GINLGEGDSVISLIVPRGEGDILTVTQNGFGKRTAVTEYPTK--SRATQGVISIKVSERN 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + I+ +++ G RT + + R+ +G+ ++ +V + Sbjct: 781 GQVVGAVQVETSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDE---NVVGLQ 837 Query: 846 PVND--NDQ 852 V + D+ Sbjct: 838 RVAEPVEDE 846 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L+ + R G + DE DL V+ FS+ G V Sbjct: 646 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + ++ A G IN+ + ++ T++G + Sbjct: 704 VRFPETQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGFGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++++ +R+ + + + +++ + I++ T G VR +S + Sbjct: 755 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETSDQIMMITDAGTLVRTRVSEV-S 813 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A+ + V+ + V D + + + D + + Sbjct: 814 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGAEAVEEDTTPLDDGDDAAE 873 Query: 776 KNDSS 780 D Sbjct: 874 PVDDD 878 >gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1] gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1] Length = 885 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 381/844 (45%), Positives = 533/844 (63%), Gaps = 19/844 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W + +++ Sbjct: 366 IFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I +EL V+ RR+ I + D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+P E ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVSEFS---PEKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GVR Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+ LA DQV+S+ + + D + Y K + G + S G Sbjct: 722 GMKLADEDQVVSLIVPSNQGDILTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERNGP 781 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E + ++ +++ G RT + R+ +G+ + ++V + Sbjct: 782 VVGAIQVE---EGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTASDE---SVVGL 835 Query: 845 FPVN 848 ++ Sbjct: 836 QRID 839 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 71/435 (16%), Positives = 159/435 (36%), Gaps = 29/435 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +++ + E A Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVITEELELVQATYG-----DERRSEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D+ +LI + Y+ + Q + E + G ++ E + + Sbjct: 524 VHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R IV L E E E Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPE 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRANG--LIAVNLRDDDSLIGVDITDGQSDIMLFSKQG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A A + + L +++ +++ N ++ T++G Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNQGDILTVTQNGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +L ++ R+ + + + + + + +++++ T G VR ++ + Sbjct: 752 GKRTELEEYPTKGRATQGVVSIKVSERNGPVVGAIQVEEGDEMMMITDAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I A + V+ + + + ++ + + SGD Sbjct: 812 -SQVGRNTQGVTLIRTASDESVVGLQRIDEVEELELPEGEEVEANAETQAPESGDLAADD 870 Query: 774 SLKNDSSVEGNISEE 788 S +DS+ + + +EE Sbjct: 871 SAADDSAADDSATEE 885 >gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT] gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT] Length = 809 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 361/889 (40%), Positives = 522/889 (58%), Gaps = 94/889 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K Sbjct: 5 NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DP AA RYTE R Sbjct: 65 ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 125 LAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ + Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HI + R+ I VTEIPYQVNKA ++ KIAELV+E+++ I+DLRDESDRQG RVVIEL Sbjct: 245 HIGEVET-RKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR++ Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A+DRAH+L GL A+ +D ++ IIR S N + AR+ L+ Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAE-------------- 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S VQ +AIL+L+L RL L R I +E L I D+LS Sbjct: 410 ------------FDFSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++ ++K++ +K PR T I +++ ED + D++VT+S G++KRVP Sbjct: 458 EKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612 +V+R Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P S Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRI 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N++ + Q ERIT I+ + +++ AT G +++ L +F + SG Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IAM L + DE+++ +E DILL T+LGQ +RFP+S +R + R S GV+ I L+ Sbjct: 635 LIAMDLTASDELVAAVETIEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSME 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++TV+E G GK T+ ++ +R+G G+ V +++ G +VA V+ DQ Sbjct: 707 ------MVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSVTDQ 758 Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895 ++L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 100/280 (35%), Gaps = 16/280 (5%) Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L++ + + + ED S + ++ S + ++ D Sbjct: 437 LDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVED- 495 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + I+ ++ G R P + R R G+ G+ + D V +++ Sbjct: 496 -----LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDT 549 Query: 744 ADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D ++ ++ + + I+ + + F Sbjct: 550 HDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILDLKSFPADHF 609 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L + KG K+TS +F G+ A D++ LVA + I+L + Sbjct: 610 LLMATNKGEIKKTSLQEFTAVR--SSGLIAMDLTA---SDELVAAVETIEEKDILLATRL 664 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 G IR PV+E+R + RA+ GV + ++ VVS++ +E Sbjct: 665 GQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDVAQE 704 >gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] Length = 850 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 354/900 (39%), Positives = 532/900 (59%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I V I EM+ SY+ Y+++VI+ RA+PD+RDG KPV RRIL+ MM +G +K Y Sbjct: 3 DQDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 +K AR GEV+GKYHPHG+++IY AL RMAQDW+LR L++GQGNFGS+DGD PAA RYT Sbjct: 63 MKSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ ++ DL K+TVD + N+D +EP VL R PN LVNG GIAVGMATN+P Sbjct: 123 ESRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+DGCVA IDNP+ID++ LME I+ PDFPTGA I+G G+++AY TG G I++R Sbjct: 183 THNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIMGLQGVRSAYETGHGRIILR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + IVV EIPY VNKA +++ IA LV EKRI I+D+ DESDR+G R+V Sbjct: 243 AKTEIENGPQ-HDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR A+A+V+LN+L++ T+LQS F+VN V L +P+ +L ++ FV R EVV+R Sbjct: 302 IEVKRDANANVLLNKLFKMTALQSSFAVNCVGLVHGRPKVLSLKDCIRTFVDHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA++RAH+L GL IA N+DEVVR+IR S P A L +R Sbjct: 362 RTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L ++Q +AI+++RLA+LT + +D + E L +I IL Sbjct: 411 ---------------FELDDIQAKAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K EL VK++ RRT I + ED +++++T+SHLGY+KR Sbjct: 456 TDDELCRQVMKDELNEVKEKYGDVRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DF+ ++ + H ++LFF++ G Y KV+ LP G+ Sbjct: 516 PLAEFRAQGRGGVGSRGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L++ + + + D + YVVF T G +++ L ++ + Sbjct: 576 NAKGRAIQNMLNIEADDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + D ++SV ++++++ + G+ +RF A+R GR S GVRGI L Sbjct: 636 TNGVKAITIREEDRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTM-GRVSTGVRGIRL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + DQ + M + + Sbjct: 695 DEDGEDQAVGMVCINDPEK----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VS++GFGKR++ D+R +NR GKG++ ++ ++ G + A+ V Sbjct: 714 ----------ETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLT--DKTGKVAAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D++ +++++ G +R+ V ++R+ RAT+GV + + K ++ + SV + + EA Sbjct: 762 TDDNDLMIINRSGITLRLKVADVRVMGRATQGVKLINLTKRNDSISSVCVVTTEDEDAEA 821 >gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1] gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1] Length = 824 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 371/840 (44%), Positives = 524/840 (62%), Gaps = 34/840 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A VILN LY++T++Q+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ LDEV+ +IR S E AR LMQ+ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G + EDED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G LIN+L L++ E I TI+P D +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++S + I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+V+ M I+ D + Y K A I + N + G I Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E+ ++ ++ G R + D R+ +G++ +S NE + V V Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810 >gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] Length = 834 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 361/913 (39%), Positives = 543/913 (59%), Gaps = 100/913 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K Sbjct: 2 SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL++G GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K ++ L+DD+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++DG +A+IDNP++ LME I+GPDFPTG +I G+ GI++AY TGRG + +RG Sbjct: 182 NLGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I++ EIPYQ+NK+ ++E+IA+LV++KR+ I DLRDESDR G RVVIE Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G ++ILN+LY+YT LQ+ F + M+AL P L IL ++ R EVV RRT Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 K+ L+KA RAH+L G IA+ N+D ++ IIR S + AR L+++ Sbjct: 362 KFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 S+VQ RAIL+++L RLTGL R I E + I E +ILS Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSH 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ IIK+ELL +K++ + RRT I +++ ED I E++++T+++ GYVKR+ + Sbjct: 456 DSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGGKG + ++DFV + S +++ F++ G V+ KV+ +P S Q+ Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK + NI+ + E+I ++ + VVF TK G +++ L +F IN SG Sbjct: 576 RGKLMSNIIRTREDEKIRAVIKTRDFSKENE---VVFVTKEGLIKKTNLDEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+KL D+I+ V + + + TK G +RF +R GR+++GV+ I+L Sbjct: 633 KAIKLKEEDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD ++S ++ + Sbjct: 692 GDSIVSALLIKDEEGS-------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILTV+E G+GKRT ++ + RSGKG+ + + GA+V+V PV + + Sbjct: 708 --------ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER--------------I 897 +++ ++ G +IR+P++ I + RAT+GV+I E+VVS+ R I Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVKSEEEEEISELNSI 817 Query: 898 RESEIVDEAESTE 910 + ++E E E Sbjct: 818 EDETNIEEVEIVE 830 >gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] Length = 887 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 387/858 (45%), Positives = 545/858 (63%), Gaps = 28/858 (3%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E + +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYT---EDKFVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714 + +G IA+ L D ++ V+ + DI+L + G+ VRF S +R Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRGI LA+GD+VIS+ IV H D D + + Sbjct: 723 GM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQG 780 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + E N S + + ++F + ++ G RT + R+ +G+ + Sbjct: 781 VVSIKVSERNGSVVGAIQAEDGDEF-MMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTIE 839 Query: 835 INEIGALVAVFPVNDNDQ 852 + +V + +++ D+ Sbjct: 840 GEK---VVGLQRIDEPDE 854 Score = 71.4 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 101/258 (39%), Gaps = 20/258 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V + G VK+ PL+ + R G V +R+ D + + + ++ F Sbjct: 639 YTEDKFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDVTDGDCDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARG--------KALINILSLNQGERITTIMPFPEDESSWN 644 S+ G V + + A+G A + + L +G+++ +++ N Sbjct: 697 SAFGKVVRFYESPVIDAEGNAKGGVRGMGRTAAGVRGIKLAEGDKVISLI------VPHN 750 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTK 701 + V+ T++G +R +L+++ +R+ + + + ++ ++ ++ T Sbjct: 751 DGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGSVVGAIQAEDGDEFMMITN 810 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G VR +S + GRN+ GV I +G++V+ + + D + E ++ S + Sbjct: 811 AGTLVRTRVSEV-SRVGRNTQGVTLIRTIEGEKVVGLQRIDEPDEELIEDAELVEGESVE 869 Query: 762 RRLISGDTEEITSLKNDS 779 Sbjct: 870 NTEQPAADTSPDDSTEQE 887 >gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] Length = 809 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 352/889 (39%), Positives = 506/889 (56%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ + Sbjct: 5 KGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R ++ GQGNFGS+DGDPPAA RYTE Sbjct: 65 KSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 +L K A +L D+ K+TVDF PNYD S +EP VL A P +L+NG GIAVGMATNIP Sbjct: 125 AKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV AVIDNP+I L+ ++GPDFPTG +I G+ GI++AY TG+G +V+R Sbjct: 185 HNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E RE IVVTEIPY VNK+++LE++A LVR+K+I I+++RDESDR G R+V Sbjct: 245 RLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVF 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG V++N+L+ T LQ+ F VN +AL G KP+ TL I++ F++ R+EVV RR Sbjct: 305 ELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +Y L KA +RAH+L GL IA+ N+DEV+ II+ S ++AR LM+R Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL +LT L I EL + I+E ++L Sbjct: 413 --------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S ++L ++K E L + E RRT IV E D++ ED I +EDMVV VS G +KR+ Sbjct: 459 SERKILEVVKNETLELAKEYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRM 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S YR Q RGGKG G + +D V+ LF+ STH +LF S+ G Y KV +P GS Sbjct: 519 PVSAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++GK++ +++ L+ E+++ ++ E V T G +R + Sbjct: 579 VSQGKSIRSLVQLSPDEQVSAVVSVETFE---EEREVFMITAKGLAKRLPVPALSNARTR 635 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ D ++ + ++++ T+ G +R R GR + GV + L Sbjct: 636 GVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEP 694 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V V Sbjct: 695 GDEVCGAVPV-------------------------------------------------- 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + + +L V+ G+GKR F R KG A VS G L AV V D Sbjct: 705 ---EEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSAR--TGELAAVLSVEAKD 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++V+ +G +I++ V +I + R GV + + K + VVSV+R+ Sbjct: 760 DVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD+ DE++++ ++ D + + RF +S R + + + L K + Sbjct: 384 IALDNIDEVIAIIKKSRTVD---SARNNLMRRFGLSE------RQAQAILDMRLQKLTSL 434 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-------GNISEE 788 + I+ +A + + ++R+++ E L + E + Sbjct: 435 ETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDERRTEIVAEEAEDL 494 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPV 847 ++L KE ++ VS G KR +R R + +V+ +F Sbjct: 495 DIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGR----GGKGLMGGKLSGDDVVSHLFVA 550 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIVD 904 + +D I+ +S++G + V+EI SR ++G + + DE+V +V + E Sbjct: 551 STHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEER 610 Query: 905 E 905 E Sbjct: 611 E 611 >gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 824 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 371/840 (44%), Positives = 525/840 (62%), Gaps = 34/840 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A VILN LY++T++Q+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LMQ+ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G + EDED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G LIN+L L++ E I TI+P D +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++S + I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+V+ M I+ D + Y K A I + N + G I Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E+ ++ ++ G R + D R+ +G++ +S NE + V V Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810 >gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] Length = 921 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 360/910 (39%), Positives = 516/910 (56%), Gaps = 78/910 (8%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 48 EITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 107 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + R+AQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 108 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 167 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 168 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 227 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 228 LSEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 287 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E Sbjct: 288 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 347 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 348 VKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 407 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ + W+ ++ +++ Sbjct: 408 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLER 467 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 468 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 527 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL +V+D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 528 ELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLSHQ 587 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S + Sbjct: 588 GYVKYQPLSDYEAQRRGGKGKSAARI---------------------------------- 613 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + + I+ L + + A++ Sbjct: 614 --------KEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGA---------- 655 Query: 666 IQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISAI-RVFAGRN 720 + + DE ++ + + + T G + ++ R Sbjct: 656 ---RGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPR---- 708 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S G+ ++L +GD++I V D + + + + T+ Sbjct: 709 SAGIIAVNLNEGDELIG---VDLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATGVRGI 765 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G + E ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G Sbjct: 766 NLGEGDSVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQ 823 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E Sbjct: 824 VVGAVQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEP 883 Query: 901 EIVDEAESTE 910 +E +S E Sbjct: 884 VEDEELDSIE 893 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 15/245 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ L+ + R G + DE DL V+ FS+ G V Sbjct: 687 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 744 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + ++ A G IN+ + ++ T++G + Sbjct: 745 VRFPESQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGYGK 795 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++++ +R+ + + + +++ + I++ T G VR +S + Sbjct: 796 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETTDQIMMITDAGTLVRTRVSEV-S 854 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV I A+ + V+ + V D + + + Sbjct: 855 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSIEPGEAIDDGTPLDDSDDGEVVD 914 Query: 776 KNDSS 780 D Sbjct: 915 DADDE 919 >gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46] gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46] Length = 867 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 98/918 (10%) Query: 1 MTEHIISSDEEEEKGIT-----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M++ + G+ + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR Sbjct: 1 MSDDNNNDGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 IL+ M G + YVK A+ + MG YHPHG++AIYD + RMAQ WS+R L++GQG Sbjct: 61 ILYAMFDNGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS D PAA RYTE RL A ++ D+ ++TVDF+PNYDG EPV+L +R P +L Sbjct: 121 NFGSRGDDGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVI 231 +NG GGIAVGMATNIP HNL EV D +DNPD LDA+ME I+GPDFPT A I Sbjct: 181 MNGSGGIAVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQI 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +G GIK AY TGRGSI +RGV+ IE+ R+ IV+TE+PYQVN M+ IA+ V++ Sbjct: 241 VGDKGIKEAYTTGRGSIRMRGVTSIEQEGT-RQSIVITELPYQVNPDRMIANIADQVKDG 299 Query: 292 RIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 R+ IA + DESD + G R+V++LKR A V+LN LY+++ LQ+ F NM+A+ P Sbjct: 300 RLQGIASIDDESDLKWGMRIVVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDGVPR 359 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 + ++ +VA + EV+VRRT+Y L++ RAH+L GL A+ LDEV+ +IR S Sbjct: 360 TLRIDQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATV 419 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 +TAR LM G + + E+Q AIL ++L RL L R Sbjct: 420 DTARTGLM--------------------------GLLDIDEIQADAILAMQLRRLAALER 453 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I +EL + +EI + DIL++ R I+K+EL V ++ RRT+IV D+ +E Sbjct: 454 QKIIDELAEIELEIADLKDILANPDRQRAIVKEELGEVVEKYGDDRRTQIVAAEGDVTEE 513 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I RE++VVT++ GY KR + Y+AQRRGGKG G ++ +D V F+ STH +L Sbjct: 514 DLIARENVVVTITSTGYAKRTKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWIL 573 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP + ARG+ + N+L ERI ++ ++ Y+V Sbjct: 574 FFTNKGRVYRLKAYELPEATRAARGQHVANLLEFQPEERIAEVLQIQSY---QDSPYLVL 630 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++++L D+ +G IA+ L D ++ C+ ++D+LL ++ GQ +RF Sbjct: 631 ATSEGKVKKSRLEDYESARSAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTA 690 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S +R GR + GV+G+ D+++SM +V Sbjct: 691 SDDALRPM-GRATAGVQGMRFKGDDKLLSMVVVEE------------------------- 724 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 E +L + GFGK+T ++ NR G G+ Sbjct: 725 ----------------------------EHNLLVATTGGFGKKTKLSEYTPQNRGGMGVL 756 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G L+ V+++D+I V+ G +IR VNEIR SRATKGV + + A Sbjct: 757 TLKYDP--KRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADG 814 Query: 889 ERVVSVERIRESEIVDEA 906 +++++R E E + A Sbjct: 815 VELLAIDRNVEDEGEETA 832 >gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] Length = 843 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 363/895 (40%), Positives = 548/895 (61%), Gaps = 86/895 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I + I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K Sbjct: 2 SNINNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LI G GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K ++ LL+D+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMAKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDG +A+IDNP++ LME I+GPDFPTG +I G GIK+AY TGRG + +RG Sbjct: 182 NLGEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I++ EIPYQ+NKA ++EKIAELV++K+IV I+DLRDESDR G RVVIE Sbjct: 242 IEIEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+G ++ILN+LY+YT LQS F + M+AL P L I++ ++ R EV+ RRT Sbjct: 302 LKKGEEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L+KA RAH+L G IA+ N+D ++ ++R + + AR +L+++ Sbjct: 362 QFNLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q RAIL+++L RLTGL RD + E + I E +IL++ Sbjct: 409 -------------YGFTDIQARAILDMKLQRLTGLERDKVEAEYQEIEKYISELREILAN 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ I+K EL +KD+ D RRT I + ++ ED I E++++T ++ GYVKR+ L Sbjct: 456 DSKIYEIMKTELQELKDKYDDDRRTVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMEL 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQ+RGG+G + ++DFV ++ +++ F++ G VY KV+ +P S Q+ Sbjct: 516 SKYKAQKRGGRGVASQNTVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + NI++L E+I I+ + + V+F TK G V++ LS+F IN SG Sbjct: 576 RGRLIGNIINLKTDEKIRAIIKTRDFSNENE---VIFVTKDGTVKKTNLSEFKNINSSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+KL D+I+ V +L+ T+ G +RF +R GR+++GV+G++L + Sbjct: 633 KAIKLKENDDIIYVGLIEDIVNEQLLIATQAGYSIRFSCEELRA-TGRDTMGVKGLTLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDTVVSALLIKDIENSS------------------------------------------- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILT++E G+GKRT ++ + +R GKG+ S + G++V+V V+ ++ Sbjct: 709 --------ILTITENGYGKRTKIDEYPLQSRIGKGVINLRCSA--KTGSVVSVLSVSTDE 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905 +++ ++ G +IR+ V++I + RAT+GV+I KDE+VVS+ R++ E DE Sbjct: 759 ELMAITSSGVVIRIAVDDIVLYGRATQGVIIMKVHGKDEKVVSITRVKSEENEDE 813 >gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 847 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 372/896 (41%), Positives = 542/896 (60%), Gaps = 68/896 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E K I + I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 TYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ LL+DL K+TV F NYDG+ + P VL A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV++GC+A ID+ +I L LME I GPDFPT +I G+ GI+ AY TG+G I Sbjct: 182 IPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIY 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR S IE + ++ I++ E+PYQVNKA +++ IA LV+EK+I I LRDESD++G Sbjct: 242 IRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+K+ A++ILNQLY T L+ F +NMVAL +P+ TL IL AF+ R ++ Sbjct: 302 RIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R + H+L GL I++ N+D ++ +I+ S E A+ +L W + + Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421 Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L D +L+ Q +AILELRL +LT L + +E L Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IL + + L I+K EL+ ++D RRT+I D+ D I +E++V+ Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVI 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S+ GYVK LS Y AQ+RGGKG+ V ++EDF+ +L + +TH +L FSS G +Y Sbjct: 542 TLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP S ARG+ ++N+L L+ ERIT I+P E + +++ + AT G V++ Sbjct: 602 MKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYK---DSINIFMATSKGMVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + G IA+ L + DE++ V N I+L T G+ V F +R GR Sbjct: 659 SLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVR-KTGRT 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 ++GV+GI + K D+V+S+ + Sbjct: 718 AIGVQGIKIKKSDKVVSLVV---------------------------------------- 737 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 K IL ++E G+GKRT ++F I +R+ +G A ++K N G Sbjct: 738 -------------PKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN--GI 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ V + DQII++++ GTL+R V EI I R T+GV+I T+K E+VV++++ Sbjct: 783 VIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838 >gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium pseudogenitalium ATCC 33035] gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium pseudogenitalium ATCC 33035] Length = 850 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 344/915 (37%), Positives = 529/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +++ I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC+L A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DNPD D L+A ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE++ R+ IV+TE+P+QVN ++ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT+Y LN+A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L + + + ++Q AIL ++L +L L R I + Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I+ EL + D+ RRT I+ D+ DED I R Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G ARG+ + N+L E+I ++ E + Y+V AT+ G Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V + Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT+ ++ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V+++D+I ++ G +IR V++IR +SRAT GV + + D +++ Sbjct: 753 P--KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLGDDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E + ++A++ Sbjct: 811 IDRNVEEDGEEDAQA 825 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 92/250 (36%), Gaps = 13/250 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + + + D + +VS +L Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + P R A + + +++ ++ + +++ Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVV------HDGEFLLV 721 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R G M R +++ + ++++I T G +R Sbjct: 722 ATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIR 781 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + IR + R ++GVR ++L +++++ + D + D + + Sbjct: 782 TEVDQIRP-SSRATMGVRLVNLGDDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840 Query: 768 DTEEITSLKN 777 + + + Sbjct: 841 KAGDASKDEE 850 >gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora] gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora] Length = 882 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 354/915 (38%), Positives = 526/915 (57%), Gaps = 63/915 (6%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + E + I + DEM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MVDSTGP--GESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV Sbjct: 59 YELGLSSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D DPPAA RYTE RLQ A LL+D+ +TVDF N+DGS QEP V+ AR P++L+NG Sbjct: 119 DSDPPAAMRYTESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGS 178 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE++D +A+I +P+I AL+ I+ GPDFPTG ILGR GI+ Sbjct: 179 SGIAVGMATNIPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIRE 238 Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 AY TGRGS+ +RGV+ IE DR+ +++TE+PYQ NKA+++E+IAELV +K++ Sbjct: 239 AYTTGRGSVTMRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDG 298 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+D+RDESDR G R+V EL+R A V+LN L++ T LQS FS +++AL +P TL Sbjct: 299 ISDIRDESDRDGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLR 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L F+ FR E + RRT+YLL KA +R H L+GL +A+ LD ++ +IR + + TAR Sbjct: 359 QMLHVFLDFRIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARY 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +L LSE+Q AIL+++L RLT L D IR Sbjct: 419 QLQY--------------------------FHGLSEIQADAILQMQLRRLTALEADKIRF 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++ DIL+ R R+L +IK+EL + + ++PRRT+I++ +ED D I Sbjct: 453 EHEDLVQKVNNYRDILAHRDRVLELIKEELKLLHNRYNSPRRTKILDLEGSLEDIDLIAN 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E VV ++ GY+KR+P+S + A RG +G++G + ++ V + H ++L FS Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATNRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G Y +R+P+ S A+G ++ IL + + E IT+++ E N + ++ T G Sbjct: 573 GISYALPAYRVPVSSRSAKGTPVVQILPIPREEEITSLLSVSAFE---NEVQLLMLTNSG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAI 713 ++R +LS F I +G IA+ L+ D + V + +L+ + G + F I + Sbjct: 630 FIKRTRLSAFSNIRSNGLIAINLELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEEL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GRN+ GVR ++L D ++SM ++ AD Sbjct: 690 RPL-GRNARGVRAMNLRDNDSLVSMDVLPAELADQV----------------------AN 726 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 S+ + + ++L S G GKR FR+ R+G G+RA Sbjct: 727 SVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRF- 785 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + LV + + ++++LVS+KG ++R+ + I SRA GV + + + Sbjct: 786 -RRKGDVLVGLKVLGSREELLLVSEKGVIVRMQADLIPQQSRAATGVRLQKLDDGDHLAE 844 Query: 894 VERIRESEIVDEAES 908 + I ++ + Sbjct: 845 IVLIPHVLEEEDDPN 859 Score = 92.2 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 15/257 (5%) Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + + + R+ + ++ D ++ E ++L T+ G R P+S Sbjct: 483 KLLHNRYNSPRRTKILDLEGSLED----IDLIANERSVVLLTENGYLKRMPVSEFEA-TN 537 Query: 719 RNSVGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R + G G + V IS D I Y Sbjct: 538 RGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQ 597 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 E I+ E +L ++ GF KRT F SN G+ A ++ Sbjct: 598 ILPIPREEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAF--SNIRSNGLIAINL--- 652 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVS 893 AL V D +++ S +G I + E+R R +GV + ++ +VS Sbjct: 653 ELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARGVRAMNLRDNDSLVS 712 Query: 894 VERIRESEIVDEAESTE 910 ++ + A S + Sbjct: 713 MDVLPAELADQVANSVD 729 >gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] Length = 813 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 349/899 (38%), Positives = 515/899 (57%), Gaps = 88/899 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + S + I +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSSD-VPSPNIDAARIDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV + K + + GE MG YHPHG++AIYD L RM+QD+S+R L++GQGNFGSV Sbjct: 60 HEMGVSSRSAHRKSSSVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE R+ + LL D+ K+TVDF NYD +EP VL A PN+LVNG Sbjct: 120 DGDPAAAMRYTEARMSPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TN+P HNL EV+D + +ID+P+ + LME ++GPDFPTGA I+GR I +A Sbjct: 180 GIAVGMSTNVPPHNLREVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIVGREAIHSA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R E+ RE+IV+TE+P+Q NK+ ++E+IAE V E +I I+DLR Sbjct: 240 YTTGRGRLRVRAEFEREQADK-RERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+ I+LKRGA+ADV+ NQL + L+ F V +AL +P+ L L+ Sbjct: 299 DESDRDGIRIAIDLKRGANADVVENQLLEH-HLERTFGVINLALVDGQPQVLDLKETLEH 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V R++VV RR++Y L +A DRAH+L G A+ N+D VV +IR + + A+ L Sbjct: 358 YVEHRKDVVRRRSEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEAL--- 414 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SE Q I+ ++L LT L R++I E ++L Sbjct: 415 -----------------------SDEFDFSEAQAEHIVRMQLGSLTSLERNEIDEEYDAL 451 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI+ IL++ S LLG+IK+EL +++E RRT I+EG + ED I ED ++ Sbjct: 452 VEEIERLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEEDSLI 511 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 V+ YVKR+P+S + Q RGGKG G +++ D V+ +F +TH +L F++ G Y+ Sbjct: 512 LVTEDDYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQ 571 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + + +P S ARGK+ +NIL L+ E +T ++ + + + ++ T++G V+R Sbjct: 572 IRGFDVPEMSRTARGKSAVNILDLDPDEELTAVVNTDDFD---DEEFLTMVTENGYVKRT 628 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + S F ++ SG IA L+ D ++ V D+L+ T+ G +RFP S R GR Sbjct: 629 EASAFERVRSSGLIAASLEEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAM-GRT 687 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L GD V+ + + + Sbjct: 688 ARGVNGIKLQGGDSVVGLVTADESRS---------------------------------- 713 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +LT++E G+GKRT ++R +R GKG+ N G Sbjct: 714 -------------------LLTITENGYGKRTPFSEYRTQSRYGKGLIDIKTGNRN--GP 752 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + AV V+++D ++++SD ++R+ ++ R TKGV++ A D+RV SV+ I E Sbjct: 753 VAAVESVSEDDDLVVMSDDAQIMRIHAADVSRVGRNTKGVIVMRLAGDDRVASVDVIPE 811 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 11/224 (4%) Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +L + +E+ ++L T+ R P+SA GR G+ G +L +GD+V + Sbjct: 495 GDTVLHEDLIPEEDSLILVTEDDYVKRMPVSAFDP-QGRGGKGIIGANLKEGDRVSKVFR 553 Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 D + Y + + D + ++ + E Sbjct: 554 ANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEELTAVVNTDDFDDE 613 Query: 798 QFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +F+ V+E G+ KRT + F R+ + G+ A + + + LV V + + +++ Sbjct: 614 EFLTMVTENGYVKRTEASAFERVRS---SGLIAASLEEGDR---LVDVTVTDGSADLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + G IR P +E R R +GV + VV + ES Sbjct: 668 TRNGMAIRFPESEARAMGRTARGVNGIKLQGGDSVVGLVTADES 711 Score = 88.3 bits (217), Expect = 6e-15, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 8/171 (4%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ + + + + + E +S+ ++L +E Sbjct: 449 DALVEEIERLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEED 508 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++ V+E + KR F R GKGI ++ + + + + F N +D ++ ++ Sbjct: 509 SLILVTEDDYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKV---FRANTHDYLLCFTN 565 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906 G ++ ++ SR +G V I DE + +V + + DE Sbjct: 566 HGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEELTAV--VNTDDFDDEE 614 >gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] Length = 878 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 378/839 (45%), Positives = 530/839 (63%), Gaps = 17/839 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+D+++ +IR + P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L ERIT I+P E ++ ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTEFS---DDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ +++I+L +K G+ VRF +R GR + GVR Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L +GDQV+S+ IV D D + + + E N Sbjct: 722 GMKLMEGDQVVSL-IVPKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNG 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++F + ++ G RT + R+ +G+ S+ +V + Sbjct: 781 RVVGAVQADEGDEF-MMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDE---QVVGL 835 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 65/428 (15%), Positives = 147/428 (34%), Gaps = 29/428 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E ++ +R A Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDA-----RRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S DL +LI + Y+ + Q + E + G +++E + + Sbjct: 524 SHDIDLEELIAREDVVVTLSHEGYV-KYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R IV L ++E + Sbjct: 583 ANTHDNILCFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ L + R G V +RD+D + + I + + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKSG 700 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + ++ A G + ++ +Q + ++ T++G Sbjct: 701 KVVRFNEDQVRAMGRTASGVRGMKLMEGDQ---------VVSLIVPKTDGDILTVTENGY 751 Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L+++ +R+ + + + ++ + ++ ++ T G VR ++ + Sbjct: 752 GKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTLVRTRVAEV 811 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I ++ +QV+ + + + M+ Sbjct: 812 -SQVGRNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDAAEAPAAPEA 870 Query: 774 SLKNDSSV 781 + DS Sbjct: 871 PTEGDSEA 878 >gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702] Length = 836 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 93/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ E IT + +T+EM+NSY+ YA++VI+GRA+P++RDG+KPVHRR+++ M Sbjct: 1 MSDDTNGGGETLFDRITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+ AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 61 YDNGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECRL A ++ D+ ++TV+F PNYDG QEP VL +R PN+L+NG Sbjct: 121 GNDGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + +++NP+ D L+A M+ ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIVGDQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RG S IE+ R+ I++TE+PY VN ++ IAE VR+ +I I Sbjct: 241 IKDAYTTGRGSIRMRGKSTIEEEGS-RQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DE SDR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 AKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDSVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT++ L++A RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIARE 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 G + + ++Q AIL ++L RL L R I + Sbjct: 420 --------------------------GLKDLLDIDDIQADAILAMQLRRLAALERQKIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + I + IL+S R I++ EL + ++ RRT IV D+ +ED I R Sbjct: 454 ELAEIEETIADLKAILASPERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + YR+QRRGGKG G ++ +D V F+ STH ++F ++ Sbjct: 514 ENVVVTITSTGYAKRTKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNY 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L GE+I I+ E + Y+V AT+ G Sbjct: 574 GRVYRLKAYELPEASRTARGQHVANLLEFQPGEQIAEIIQIQSFE---DAPYLVLATQQG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ G IA+ L+ D+++ + CT ++D+LL ++ GQ +RF + Sbjct: 631 RVKKSRLTDYDTARSGGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++++ +V Sbjct: 691 RPM-GRATAGVKGMRFRGEDQLLALTVVHD------------------------------ 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +L + G+GKRT ++ + R G+ Sbjct: 720 -----------------------DSCLLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYD 756 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V ++D+I V+ G +IR V +IR SRAT GV + AK +++ Sbjct: 757 P--KRGKLIGAVTVTEDDEIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLA 814 Query: 894 VERIRESEIVDEAE 907 ++R E E + A+ Sbjct: 815 IDRNVEDEGEESAQ 828 >gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12] Length = 810 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 361/892 (40%), Positives = 540/892 (60%), Gaps = 85/892 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP H Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG + +IDNPDI LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 182 NLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I++ EIPYQ+NKA ++E+IA LV+EK+I I DLRDES+R+G RVVIE Sbjct: 242 VKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+G +++LN+LY+YT LQS F V M+AL P+ TL +L ++ R +V+ RRT Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKILTLKQMLSEYIGHRFQVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +E+Q ++IL++RL RLTGL R+ + E L I E DILS Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILELQDILSH 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ I+K+ELL VK+ RRT I E +++ ED I E+M++T ++ GY+KR+ Sbjct: 456 DSKIYDIMKKELLEVKEVYGDNRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y++Q RGGKG SG+ D+D V + S +++ F+ G VY KV++LP S Q+ Sbjct: 516 NKYKSQNRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + NIL + + E+I I+ + ++F TK G V++ L +F IN G Sbjct: 576 RGRLISNILRIGEEEKIRAIIKTRIFD---KEKELIFVTKQGIVKKTSLEEFKNINTGGL 632 Query: 674 IAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+K D+++ V +N++ + T+ G VRFP +R GRN++GV+GI L + Sbjct: 633 IAIKFKEEDDLIYVGLVEASDNEVFIATRRGFAVRFPNDNVRP-TGRNTMGVKGIELREK 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S ++ Sbjct: 692 DEVVSALLI--------------------------------------------------- 700 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K KE ILT++E G+GKRT ++ NR GKG+ ++ + G +V+V D ++ Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLSAFDEEE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 ++ ++ G +IR P++ I SRA +GV+I A DE+V S+ RI+ E + Sbjct: 758 LVCITSNGVIIRTPMHSISRFSRAAQGVIIMKVASDEKVASITRIKAEEKEE 809 >gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] Length = 873 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 381/861 (44%), Positives = 540/861 (62%), Gaps = 20/861 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + SD + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G +WNK Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV Sbjct: 59 NVLGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L DL K+TVDF PNYDG+ Q P V+ + PN+LVNG Sbjct: 119 DGDSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ GC+A ID+ DI ++ LME I GPDFPT A+I GR GI +A Sbjct: 179 GIAVGMATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDA 238 Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG + IR + +E RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ L Sbjct: 239 YRTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISAL 298 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G R+VIE+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ Sbjct: 299 RDESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIA 358 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AFV R EVV RRT + L KAR+RAH+L LA+A+AN+D ++ +IR +P P A+ L+ Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIA 418 Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471 R W+ ++ +++ D + DG YL+E Q +AIL+LRL +LTGL + Sbjct: 419 RPWDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHE 478 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 + E L +I+E L IL S RL+ +I++EL ++++ + RRT I E D+ ED Sbjct: 479 KLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDARRTEITENTADINIED 538 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +ED+VVT+SH GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L Sbjct: 539 LISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILC 598 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV++LP S ARG+ ++N+L L Q ERIT I+P E E YV A Sbjct: 599 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMA 655 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L DF + +G IA+ L+ DE++ V+ N+++L + G+ VRF Sbjct: 656 TASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAED 715 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 A+R GR + GVRGI LA D+V+S+ I +A++ + Sbjct: 716 AVRPM-GRTATGVRGIRLADEDKVVSLIIPRGEGHILTVTENGYGKRTAEQEYPTK--SR 772 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 T V + I+ ++ G RT + + R+ +G+ Sbjct: 773 ATQGVISIKVSERNGNVVGAIQVDETDQIMMITNAGTLVRTRVSEVSVVGRNTQGVTLIR 832 Query: 832 VSKINEIGALVAVFPVNDNDQ 852 ++ + +V + V + ++ Sbjct: 833 TAEEEK---VVGLQRVAETEE 850 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 65/410 (15%), Positives = 142/410 (34%), Gaps = 35/410 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + ++L + + E + IR N ARR + + Sbjct: 476 EHEKLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYN--DARRTEITENTAD 533 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI D Y LS+ + + + D I L + Sbjct: 534 INIEDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 593 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ Sbjct: 594 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 646 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ L + R G + DE DL + V+ FS Sbjct: 647 EEGYYVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 704 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + + A G + + L +++ +++ +++ T+ Sbjct: 705 AQGKVVRFAEDAVRPMGRTATG---VRGIRLADEDKVVSLI------IPRGEGHILTVTE 755 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710 +G +R ++ +R+ + + + + + + + I++ T G VR + Sbjct: 756 NGYGKRTAEQEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITNAGTLVRTRV 815 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 S + GRN+ GV I A+ ++V+ + V + D + + + + Sbjct: 816 SEV-SVVGRNTQGVTLIRTAEEEKVVGLQRVAETEEDENSDEAGAEDIPS 864 >gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141] gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141] Length = 850 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 345/915 (37%), Positives = 530/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +++ I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC+L A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DNPD D L+A ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE++ R+ IV+TE+P+QVN ++ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT+Y LN+A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L + + + ++Q AIL ++L +L L R I + Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I+ EL + D+ RRT I+ D+ DED I R Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G ARG+ + N+L E+I ++ E + Y+V AT+ G Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V + Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT+ ++ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V+++D+I ++ G +IR V++IR +SRAT GV + + A D +++ Sbjct: 753 P--KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLADDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E + ++A++ Sbjct: 811 IDRNVEEDGEEDAQA 825 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 93/250 (37%), Gaps = 13/250 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + + + D + +VS +L Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + P R A + + +++ ++ + +++ Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVV------HDGEFLLV 721 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R G M R +++ + ++++I T G +R Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIR 781 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + IR + R ++GVR ++LA +++++ + D + D + + Sbjct: 782 TEVDQIRP-SSRATMGVRLVNLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840 Query: 768 DTEEITSLKN 777 + + + Sbjct: 841 KAGDASKDEE 850 >gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f] gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f] Length = 816 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 361/887 (40%), Positives = 507/887 (57%), Gaps = 91/887 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+R+ G+VMG Sbjct: 1 MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIYD L R+AQ WSLR L++G GNFGS DPPAA RYTE R+ A +L Sbjct: 61 YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDG EP+VL +R+PN+LVNG GGIAVGMATNIP HNL EV G Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180 Query: 205 VIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +D+PD L+E I++GPDFPT +I+GR GI++AY TGRGSI +R V ++E+ Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIVGRNGIEDAYRTGRGSIRMRAVVNVEENK 240 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319 R Q+VVTE+PYQVN + EKIAELVR+ +I I+D+RDE S R G R+VI+LKR A Sbjct: 241 -GRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDAV 299 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 A V+LN LY++T LQ F VNM+A+ P L I+ +V + EV+VRRT+Y L K Sbjct: 300 AKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQIISYYVEHQIEVIVRRTRYQLRK 359 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 AR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R Sbjct: 360 ARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMER------------------- 400 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSE+Q AIL+++L RL L R I +E L ++ E IL+S +R Sbjct: 401 -------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVSELEAILASPARQRE 453 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 II QEL V ++ RRTR+V DM ED I RED+VVTV+ GY KR +YR+Q Sbjct: 454 IIGQELAEVVEKYGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQ 513 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 +RGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + A+G+ + Sbjct: 514 KRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 573 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 NIL+ +Q ERI +M + E Y+V ATK G ++ L+DF G +A+ L Sbjct: 574 NILAFSQDERIAEVMAIQDYE---AAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLR 630 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737 DE++S +D+LL ++ Q +RF +R GR + GV G+ D+++S Sbjct: 631 DDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPM-GRATSGVIGMRFDDSDELLS 689 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M +V+ Sbjct: 690 MDVVVPDTTAD------------------------------------------------- 700 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +L + G+ KRT ++ + R GKG+ + ++ G LV V +DQ+ ++ Sbjct: 701 --LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVAPDDQLYAIT 756 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 G ++R ++R A R T GV + +VV V R ++ D Sbjct: 757 SNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVARNADANDSD 803 Score = 62.9 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 11/231 (4%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G K+ L+ + + R GG + +RD+D + +V+ +L Sbjct: 593 YEAAPYLVLATKRGLCKKTALTDFDSNRAGG--LVAINLRDDDELISARLVAPGDDLLLV 650 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S + + P R + + + + + + ++ D ++ AT Sbjct: 651 SRNAQSIRFHADDEQL-RPMGRATSGVIGMRFDDSDELLSMDVVVPDT----TADLLVAT 705 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 G +R L+++ R GK + + ++ + T G +R Sbjct: 706 SGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVAPDDQLYAITSNGGVLRTV 765 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R R ++GVR I L G QV+ +A A+ A Sbjct: 766 AKDVRRAQ-RQTMGVRLIDLEAGVQVVGVARNADANDSDGSGENAGSDGPA 815 >gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563] gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 811 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 360/886 (40%), Positives = 540/886 (60%), Gaps = 85/886 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP H Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG + +IDNP+I LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + +++ EIPYQ+NK+ ++E+IA LV+EK+I I DLRDES+R+G RVVIE Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+G +++LN+LY+YT LQS F V M+AL P+ TL +L +++ R +V+ RRT Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +E+Q ++IL++RL RLTGL R+ + E L I E DILS Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSY 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+KQELL VKD RRT I E +++ ED I E+M++T ++ GY+KR+ Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y++Q RGGKG +G+ D+D V + S +++ F+ G VY KV++LP S Q+ Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + N+L + + E+I I+ + +VF TK G V++ L +F IN G Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFD---KEKELVFVTKQGIVKKTSLEEFKNINTGGL 632 Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+K D+++ V EN++ + T+ G VRFP +R GRN++GV+GI L +G Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S ++ Sbjct: 692 DEVVSALLI--------------------------------------------------- 700 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K KE ILT++E G+GKRT ++ NR GKG+ ++ + G +V+V D ++ Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLTALDEEE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ ++ G +IR P+N I SRA +GV+I A DE+V S+ RI+ Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803 >gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] Length = 811 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 360/886 (40%), Positives = 540/886 (60%), Gaps = 85/886 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP H Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG + +IDNP+I LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + +++ EIPYQ+NK+ ++E+IA LV+EK+I I DLRDES+R+G RVVIE Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+G +++LN+LY+YT LQS F V M+AL P+ TL +L +++ R +V+ RRT Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +E+Q ++IL++RL RLTGL R+ + E L I E DILS Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSH 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++ I+KQELL VKD RRT I E +++ ED I E+M++T ++ GY+KR+ Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y++Q RGGKG +G+ D+D V + S +++ F+ G VY KV++LP S Q+ Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + N+L + + E+I I+ + +VF TK G V++ L +F IN G Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFD---KEKELVFVTKQGIVKKTSLEEFKNINTGGL 632 Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+K D+++ V EN++ + T+ G VRFP +R GRN++GV+GI L +G Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S ++ Sbjct: 692 DEVVSALLI--------------------------------------------------- 700 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K KE ILT++E G+GKRT ++ NR GKG+ + ++ G +V+V D ++ Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCN--DKTGNIVSVLTALDEEE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ ++ G +IR P+N I SRA +GV+I A DE+V S+ RI+ Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803 >gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 844 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 355/898 (39%), Positives = 509/898 (56%), Gaps = 87/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y Sbjct: 21 EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR G+V+GKYHPHG+ A+Y + RMAQ++S+R LL++G GNFGS+DGD AA RYT Sbjct: 81 KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV A N DI + +ME ++GPDFPTGA I G +GI N + TGRGS+ IR Sbjct: 201 PHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE R IVVTEIPY VNK ++EKI ELV K+I I+DLRDES R G R+V Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR +V+LN+L++ T+LQ+ FSVN +AL P + ++K + + EV+VR Sbjct: 321 IEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R Sbjct: 381 RTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+QT+AILE+RL LTGL D ++ E L + IK+ DIL Sbjct: 430 ---------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIKDLEDIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R + II + L + ++ RRT I+ G+ +DED I ED+VVT+S GY KR Sbjct: 475 ENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G IN L + + E I TI+P + F T G ++R LSDF I Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----EQGSLFFTTSKGIIKRANLSDFESIRA 650 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L D++ SV +++ + G +RF + R GR + GV+GI+L Sbjct: 651 NGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + V+ + H + Sbjct: 710 DDEYVVGTGLSSHGE--------------------------------------------- 724 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L V KG GK T D+R++ R KG+ V+ G LV++ VN + Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDR--TGNLVSIKVVNRD 774 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ ++++ G +IR+ + +I + R T GV + S E V S+ ++ EI D + Sbjct: 775 EEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDDNDDE 832 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 15/221 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +KR LS + + R GK + +++ D + + + V +S G V + Sbjct: 632 TSKGIIKRANLSDFESIRANGKI--AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFN 689 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 A G IN+ S + YV+ G + + Sbjct: 690 ENDAREMGRIATGVKGINLEDDEY---------VVGTGLSSHGEYVLAVGSKGLGKLTDI 740 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +D+ R K L D +S++ ++ + L+ T G+ +R I I GR Sbjct: 741 NDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGKVIRLSIQDI-SVIGR 799 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 N+ GV+ ISL ++V S+AI + D ++ H + Sbjct: 800 NTSGVKLISLENKEEVKSIAIFKKEEIDDNDDEQQTSHGNE 840 >gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 847 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 363/885 (41%), Positives = 532/885 (60%), Gaps = 69/885 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +MG +WNK Y K ARI G V+GK Sbjct: 17 LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YDA+ RMAQ++SLR LI+GQGNFGSVDGD AA RYTE RL K +H +L Sbjct: 77 YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL KDTV++ NYD + P V+ + PN+L+NG GIAVGMATNIP HN+GE+++ C+A Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263 +DN +I + LM+ + GPDFPT +I G GI++AY+TGRG I IR S I R Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTKR 256 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 E I++ EIPYQVNK ++EKIA+LV+EK+I I+ LRDESDR G R+V+E+KR +++ Sbjct: 257 ESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEIV 316 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY T LQ F +NMVAL +P+ +L IL F+ R ++ R+T + L K R Sbjct: 317 LNNLYSMTQLQISFGINMVALCYGQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIYYR 376 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID---------LI 434 ++L IA+ N+D V+ +I+ S + E A+ +L+ W+ ++I +++ Sbjct: 377 LNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFSKK 436 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + ++S+ Q +AIL+LRL +L L + E L + + IL Sbjct: 437 QKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILKYP 496 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L IK+ELL +K E + RRT+I++ +++ ED I ++D++VT+SH GYVK PL Sbjct: 497 DELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQPLK 556 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQ RGGKG+S ++++DF+ + +TH S+L FSS G VY K+++LP S + Sbjct: 557 DYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRGSI 616 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK +IN+L L E IT I+PF + E LYV AT G V++ L +F + SG I Sbjct: 617 GKPIINLLPLESKEYITAILPFRKYE---KKLYVFMATASGIVKKTALHEFSRPRSSGII 673 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L+S D+++ + + +L ++ G+ VRFP + +R GR + GV+GISL GD+ Sbjct: 674 AVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNM-GRAASGVKGISLIPGDR 732 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ I + Sbjct: 733 VVSLIIPKNNSP------------------------------------------------ 744 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ILTV++ G+GKRT ++ +R+ +G+ + VSK N G +V VND DQI+ Sbjct: 745 -----ILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRN--GKVVGAVQVNDYDQIM 797 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++D GTL+R+ V+E+ I R T GV + + + VV ++R+ E Sbjct: 798 IITDSGTLVRIRVSEVSIVGRNTHGVRLIRISNNNNVVGLQRVVE 842 >gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61] gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3] gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52] gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61] gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3] gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52] Length = 818 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 356/843 (42%), Positives = 519/843 (61%), Gaps = 32/843 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+VTE+PYQVNKA ++E+IAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY++T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMAR--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLVRLIAELRG 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G + +DED I +E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L L++ E I ++P + + Y+VFATK G +R+ LS F I Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIESE--FSDERYLVFATKQGIAKRSPLSAFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISVRLTDGKKHLIIGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M I+ + + + + Sbjct: 694 LDDGDEVVGMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ ++ ++ G R + D + R +G++ +S + + V V Sbjct: 754 VTTVVGNED--VMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKVP 811 Query: 849 DND 851 + + Sbjct: 812 EEE 814 >gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 844 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 354/898 (39%), Positives = 509/898 (56%), Gaps = 87/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y Sbjct: 21 EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR G+V+GKYHPHG+ A+Y + RMAQ++S+R LL++G GNFGS+DGD AA RYT Sbjct: 81 KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV A N DI + +ME ++GPDFPTGA I G +GI N + TGRGS+ IR Sbjct: 201 PHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE R IVVTEIPY VNK ++EKI ELV K+I I+DLRDES R G R+V Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR +V+LN+L++ T+LQ+ FSVN +AL P + ++K + + EV+VR Sbjct: 321 IEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R Sbjct: 381 RTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+QT+AILE+RL LTGL D ++ E L + I++ DIL Sbjct: 430 ---------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIEDLEDIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 + R + II + L + ++ RRT I+ G+ +DED I ED+VVT+S GY KR Sbjct: 475 ENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G IN L + + E I TI+P + F T G ++R LSDF I Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----EQGSLFFTTSKGIIKRANLSDFESIRA 650 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L D++ SV +++ + G +RF + R GR + GV+GI+L Sbjct: 651 NGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + V+ + H + Sbjct: 710 DDEYVVGTGLSSHGE--------------------------------------------- 724 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L V KG GK T D+R++ R KG+ V+ G LV++ VN + Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDR--TGNLVSIKVVNRD 774 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ ++++ G +IR+ + +I + R T GV + S E V S+ ++ EI D + Sbjct: 775 EEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDDNDDE 832 >gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] Length = 812 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 356/884 (40%), Positives = 542/884 (61%), Gaps = 86/884 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VDG +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG Sbjct: 182 NLGELVDGILALIDNKDIEILELMNFIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K+G +++LN+LY+YT LQ+ F V M++L P L +L ++ R EV+ RRT Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFEVITRRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L+KA RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +++Q R+IL+++L RLTGL R+ I NE + IKE ++L+ Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S++ I+K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ Sbjct: 456 NSKIYEIMKKELLELKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y+AQRRGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+ Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + NI++L++GE++ + E +VF TK+G +++ L +F IN SG Sbjct: 576 RGRLIGNIINLSEGEKVRDTIVIKEFVPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632 Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K+ D+I+ V + +IL+ T G C RF IR GR++ GV+ I+L + Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S ++ + Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++ Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +++ ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801 >gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] - Ureaplasma urealyticum gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 840 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 353/895 (39%), Positives = 512/895 (57%), Gaps = 87/895 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y Sbjct: 21 EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR G+V+GKYHPHG+ A+Y + RMAQD+S+R LL++G GNFGS+DGD AA RYT Sbjct: 81 KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV A N ++ + +ME ++GPDFPTGA I G +GI + TGRGS+ IR Sbjct: 201 PHNLTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE R IVVTEIPY VNKA ++EKI ELV K+I I+DLRDES R G R+V Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR +V+LN+L++ T LQ+ FSVN +AL P + ++K + + E++VR Sbjct: 321 IEVKRDVIPEVLLNKLFKTTPLQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEILVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA++R H++ GL IAV N+DEV++II+ S + + A + L+QR Sbjct: 381 RTNFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQR----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+QT+AILE+RL LTGL D ++ E L + IK+ D+L Sbjct: 430 ---------------FDLTELQTKAILEMRLRALTGLNIDKLKKEYEDLILVIKDLEDVL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550 ++ +R + II + L + ++ RRT I+ G+ +DED I ED+VVT+S GY KR Sbjct: 475 NNYNRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G IN L + + E I TI+P + + F T G ++R LSDF I Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----DQGSLFFTTSKGIIKRANLSDFESIRA 650 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ L D++ SV +++ + G +RF + R GR + GV+GI+L Sbjct: 651 NGKIAITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + V+ + H + Sbjct: 710 NDEYVVGTGLSSHGE--------------------------------------------- 724 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L V KG GK T D+R++ R KG+ V+ ++ G LV++ VN Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DKTGNLVSIKVVNRE 774 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++ ++++ G +IR+ + +I + R T GV + S E V S+ ++ EI DE Sbjct: 775 EEALIITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEINDE 829 >gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703] gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium adolescentis ATCC 15703] Length = 886 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 347/909 (38%), Positives = 513/909 (56%), Gaps = 97/909 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 20 ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 79 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTEC Sbjct: 80 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 139 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 140 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 199 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+PD + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 200 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 259 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 260 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 318 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV Sbjct: 319 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 378 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM Sbjct: 379 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 428 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L +I + Sbjct: 429 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 472 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 473 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 532 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 533 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 592 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P + Y+V AT+ G V++ L+++ Sbjct: 593 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDV---AKYLVLATRSGKVKKTALAEYDSP 649 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C ++DI+L +K G ++F + +R GR Sbjct: 650 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPM-GRQ 708 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ GD++++M +V Sbjct: 709 TAGVQGMKFRDGDELLAMDVVQ-------------------------------------- 730 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 731 -------------GDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 775 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V ++DQI+ + G +IR V E++ R T+GV + K++ ++S+ R E+ Sbjct: 776 LVGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEET 835 Query: 901 EIVDEAEST 909 + D ++ Sbjct: 836 DEDDAEQAA 844 >gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109] gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109] Length = 838 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 339/903 (37%), Positives = 502/903 (55%), Gaps = 94/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ D I + + EMQNSY+ YA++VI+GRA+P++RDG+KPVHRRIL+ M Sbjct: 1 MSDDTNGGDNLF-DRIEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ E MG YHPHG++AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 60 FDNGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A ++ D+ +DTV F+PNYDG EP VL +R PN+L+NG G Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D +++NP+ + M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIVGEKG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RG + IE+ R+ IV+TE+PYQVN ++ IAE VR+ ++ I Sbjct: 240 IDDAYRTGRGSIRMRGKAEIEEEGS-RQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGI 298 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DES DR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 299 SKIDDESSDRVGLRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L +V + +V+VRRT++ L KA + AH+L GL A+ LDEV+ +IR S + AR Sbjct: 359 QMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIARE 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL ++L RL L R I + Sbjct: 419 GLM--------------------------DLLTVDEIQANAILAMQLRRLAALERQKIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L L I + DIL+ R I++ EL + ++ RRT+IV D+ +ED I R Sbjct: 453 QLAELERIIADLEDILAKPERQRAIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIAR 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + YR QRRGGKG G +R +D V F+ STH +VLFF+++ Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNM 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y+ K + LP + ARG+ + N+L GE+I ++ E + Y+V AT G Sbjct: 573 GRMYRLKTYELPEATRTARGQHVANLLEFQPGEQIAQVIQIQSFE---DAPYLVLATAQG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ SG IA+ L+ D+++ + C+ E+D+LL ++ GQ +RF + Sbjct: 630 RVKKSRLTDYATTRSSGLIAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ DQ+++M +V Sbjct: 690 RPM-GRATAGVYGMRFRGEDQLLAMTVV-------------------------------- 716 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++ + + G+GKRT ++ R G G+ A Sbjct: 717 ---------------------QEDSALFVATSGGYGKRTPMEEYPAKGRGGLGVVAFKYQ 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 K G L+ V ++D+I+ ++ G +IR VN+IR R+T GV + K +V+ Sbjct: 756 K--SRGKLIGALTVTEDDEILAMTSAGGVIRTEVNQIRETGRSTMGVRLVDLDKGVELVA 813 Query: 894 VER 896 V+R Sbjct: 814 VDR 816 >gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299] gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299] Length = 856 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 365/902 (40%), Positives = 545/902 (60%), Gaps = 88/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I D +++SYL Y+++VI+GRA+PD +DGLKPVHRRILF M + + Y Sbjct: 6 ENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSARAPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R LI+GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R K + +L D+ KDTV+F NYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 ESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++D + ++DNP+ D LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE G +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR G RVV Sbjct: 246 AKHHIET-RGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A +++++N LY+ T +++ F + ++A+ +P+ FTL +L F++ R+ V++R Sbjct: 305 IELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLNVFISHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N A+ +L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I E IL Sbjct: 414 ---------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IIK+EL ++++ + R T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 KSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y QRRGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P + + + + F T++G V+R LS+F I + Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFD---ESKSLAFFTRNGVVKRTSLSEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + T +++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694 Query: 731 KG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+ +V + + Sbjct: 695 HDTDFVVDANVVDNIE-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +LTVS+KG GKRT+ ++R +NR+G G+ + +S + G +V V++ Sbjct: 711 --------QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--KTGNVVGAVLVDE 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EAES 908 +++++ G +IRV + IR A R T GV+I + ++VVS+ + + + + + E+ Sbjct: 761 AQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKEDDDELDIEN 820 Query: 909 TE 910 + Sbjct: 821 AD 822 >gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578] Length = 809 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 350/889 (39%), Positives = 504/889 (56%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ + Sbjct: 5 KGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R ++ GQGNFGS+DGDPPAA RYTE Sbjct: 65 KSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 +L K A +L D+ K+TVDF PNYD S +EP VL A P +L+NG GIAVGMATNIP Sbjct: 125 AKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV AVIDNP+I L+ ++GPDFPTG +I G+ GI++AY TG+G +V+R Sbjct: 185 HNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E RE IVVTEIPY VNK+++LE++A LVR+K+I I+++RDESDR G R+V Sbjct: 245 RLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVF 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG V++N+L+ T LQ+ F VN +AL G KP+ TL I++ F++ R+EVV RR Sbjct: 305 ELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +Y L KA +RAH+L GL IA+ N+DEV+ II+ S ++AR LM+R Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL +LT L I EL + I+E ++L Sbjct: 413 --------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S ++L ++K E L + RRT IV E D++ ED I +EDMVV VS G +KR+ Sbjct: 459 SERKILEVVKNETLELAKGYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRM 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S YR Q RGGKG G + +D V+ LF+ STH +LF S+ G Y KV +P GS Sbjct: 519 PVSAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++GK++ +++ L+ E+++ ++ E V T G +R + Sbjct: 579 VSQGKSIRSLVQLSPDEQVSAVVSVETFE---EEREVFMITAKGLAKRLPVPALSNARTR 635 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ D ++ + ++++ T+ G +R R GR + GV + L Sbjct: 636 GVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEP 694 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V V Sbjct: 695 GDEVCGAVPV-------------------------------------------------- 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + + +L V+ G+GKR F R KG VS G L AV V D Sbjct: 705 ---EEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSAR--TGELAAVLSVEAKD 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++V+ +G +I++ V +I + R GV + + K + VVSV+R+ Sbjct: 760 DVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808 Score = 68.3 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 95/241 (39%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD+ DE++++ ++ D + + RF +S R + + + L K + Sbjct: 384 IALDNIDEVIAIIKKSRTVD---SARNNLMRRFGLSE------RQAQAILDMRLQKLTSL 434 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-------TSLKNDSSVEGNISEE 788 + I+ +A + + ++R+++ E + V + Sbjct: 435 ETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDERRTEIVAEEAEDL 494 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPV 847 ++L KE ++ VS G KR +R R + +V+ +F Sbjct: 495 DIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGR----GGKGLMGGKLSGDDVVSHLFVA 550 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIVD 904 + +D I+ +S++G + V+EI SR ++G + + DE+V +V + E Sbjct: 551 STHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEER 610 Query: 905 E 905 E Sbjct: 611 E 611 >gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] Length = 867 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 378/851 (44%), Positives = 536/851 (62%), Gaps = 18/851 (2%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Sbjct: 3 EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH +L DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I Sbjct: 183 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 242 Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R Sbjct: 243 RARAEVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV Sbjct: 303 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ RSW ++ Sbjct: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAA 422 Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ D + +G +L+E Q +AIL+LRL +LTGL + + E L Sbjct: 423 MLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I+E L IL S RL+ +I++EL +++D + PRRT I E D+ ED I +ED+VVT Sbjct: 483 KQIEELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITENTADINIEDLINQEDVVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y Sbjct: 543 LSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWM 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP S ARG+ ++N+L L Q ERIT I+P E E YV AT G V++ Sbjct: 603 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMATASGTVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L DF + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + Sbjct: 660 LQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L D+V+S+ I + + + + S Sbjct: 719 TGVRGIKLMDNDKVVSLIIPRGEGHILTVTENGFGKRTEEAEYPTKSRATQGVISIKVSE 778 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 Q + I+ +++ G RT + + R+ +G+ ++ + + Sbjct: 779 RNGHVVGAIQVEDTDQ--IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEK---V 833 Query: 842 VAVFPVNDNDQ 852 V + V + + Sbjct: 834 VGLQRVAETED 844 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 65/419 (15%), Positives = 140/419 (33%), Gaps = 35/419 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + +L + + E + IR + N RR + + Sbjct: 470 EHEKLLEEYRELLKQIEELLFILRSPERLMEVIREELEAIRDAYN--DPRRTEITENTAD 527 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +I+DLI+ D Y LS+ + + + D I L + Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 587 Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + + + G + ++++ R T I+ Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 640 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 V + G VK+ PL + R G + DE DL + V+ FS Sbjct: 641 EEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 698 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G V + + A G I ++ ++ +++ T+ Sbjct: 699 AQGKVVRFAEDAVRAMGRTATGVRGIKLMDNDK---------VVSLIIPRGEGHILTVTE 749 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +G +R + +++ +R+ + + + ++ + I++ T G VR + Sbjct: 750 NGFGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTLVRTRV 809 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S + GRN+ GV I A+ ++V+ + V + D + + + + Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETEDDENTDEDGIDVDGDVDTSVDTEE 867 >gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] Length = 867 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 377/839 (44%), Positives = 527/839 (62%), Gaps = 15/839 (1%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + K + +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 DFAKEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH +L D+ K+TVDF NYDGS EP V R P +LVNGG GIAVGMATNI Sbjct: 123 TEVRMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ EV+DGCVA+ID P++D+ LME I GPDFPT +I G GI+ AY TGRG I + Sbjct: 183 PPHNINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGARGIREAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E+ + IVVTEIPYQVNKA +LEKIAELV+EK+I I LRDESD+ G R+ Sbjct: 243 RARASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG +VILN LY T LQ++F +NMVAL+ +P L +L+AF+A R EVV Sbjct: 303 VIELRRGEVGEVILNNLYAQTQLQTVFGINMVALDKGQPRLMNLKQVLEAFIAHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L GLA+A++N+D ++ +I+ S NP AR++L+ W + + Sbjct: 363 RRTLYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGM 422 Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ + D +LS Q +AIL+L+L RLTGL +D I E L Sbjct: 423 LERAGADATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E L+IL + RL +++ EL+ ++D RRT I + D+ ED I +D+VVT+ Sbjct: 483 KIAELLNILRNPDRLTEVVRDELVELRDSYGDERRTEIYQNQSDLTVEDLINEQDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL Y+AQ+RGG+GRS M+DEDF+ LF+ TH ++L FSS G VY +K Sbjct: 543 SHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYWKK 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ LPIGS ARGK ++N+L L +GERI+ ++P E ++ +V AT +G V+R L Sbjct: 603 VYELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFT---DDEFVFMATANGTVKRTAL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F + +G IA+ + D ++ V + DI+L G+ +RF +R GR + Sbjct: 660 SNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPM-GRTAA 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L+ ++ + IV D Y K + + G S Sbjct: 719 GVRGIRLSDEQTMVGLIIVEDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRN 778 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 G + E I+ +S G RT+ D + +R+ +G+R + ++ L Sbjct: 779 GGVV---GAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDDKEQLVEL 834 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 16/242 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 ++ V + G VKR LS + R G + RD D + + ++ F Sbjct: 639 FTDDEFVFMATANGTVKRTALSNFSRPRSNGIIALDI--RDGDRLVGVARTDGQRDIMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G + + A A + + L+ + + ++ + ++ AT Sbjct: 697 ADSGKAIRFNEQDVRPMGRTA---AGVRGIRLSDEQTMVGLIIV-------EDGDILTAT 746 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 +G +R + D+ R G + + + D + E++I+L + G VR Sbjct: 747 VNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRNGGVVGAVQVATEDEIMLISNGGVLVRTA 806 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + I V + RN+ GVR I L +Q++ + + + +E +A + Sbjct: 807 VEDISVMS-RNTQGVRLIRLDDKEQLVELERIPFLGDEDEEAGGDDGDDNAGENSSASGE 865 Query: 770 EE 771 EE Sbjct: 866 EE 867 >gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] Length = 839 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 336/911 (36%), Positives = 522/911 (57%), Gaps = 97/911 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP+VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G G+K A+ TGRG ++IR Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ ++ IVVTE+PYQV+ + +L+K ++LV+E R+ I D+RDES R R+V Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FSVN +AL +P+ L ++ FV R +VV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G + + + + IIRF P+ Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L++VQ AIL L L R+ + + E EI++ Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + DE +N Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRAV-GRNSQGVRG 691 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I L + D+V+ M + + Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838 +E+ +L VSE G+GKR+ D +RI+NR GKG++ +++ + Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA+ V + + +++++ G IR+ ++ +RI RAT+GV + + + + +V ++ Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818 Query: 899 ESEIVDEAEST 909 + + + E Sbjct: 819 KEDDDESTEEA 829 >gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] Length = 904 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 347/909 (38%), Positives = 513/909 (56%), Gaps = 97/909 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 38 ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTEC Sbjct: 98 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+PD + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 218 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 396 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L +I + Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P + Y+V AT+ G V++ L+++ Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDV---AKYLVLATRSGKVKKTALAEYDSP 667 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C ++DI+L +K G ++F + +R GR Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPM-GRQ 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ GD++++M +V Sbjct: 727 TAGVQGMKFRDGDELLAMDVVQ-------------------------------------- 748 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 749 -------------GDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 793 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V ++DQI+ + G +IR V E++ R T+GV + K++ ++S+ R E+ Sbjct: 794 LVGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEET 853 Query: 901 EIVDEAEST 909 + D ++ Sbjct: 854 DEDDAEQAA 862 >gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011] gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9] Length = 920 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 347/908 (38%), Positives = 516/908 (56%), Gaps = 97/908 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + + + DEM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 48 QRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 107 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTEC Sbjct: 108 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRYTEC 167 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP H Sbjct: 168 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 227 Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV DG +D+P+ + L++ I+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 228 NMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATILGHKGIEQAYRTGRGLIT 287 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 288 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSGRTGQ 346 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + +V Sbjct: 347 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 406 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S E AR LM Sbjct: 407 IARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLM---------- 456 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + +VQ AIL ++L RL L R I +E + L I + Sbjct: 457 ----------------DLLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYA 500 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 501 DILAKPERQRKIVGDELDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFI 560 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +RD+D V F+ STH +LFF++ G VY+ K + LP Sbjct: 561 KRTKADEYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPE 620 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P+ E + Y+V AT+ G V++ +LS++ Sbjct: 621 GSRDSKGQHVANLLQFTPDESIQTVLSIPDYEVAD---YLVLATRSGKVKKTRLSEYDSP 677 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L DE++ C +DI+L +KLG ++F +R GR Sbjct: 678 RQGGLIAVRLMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPM-GRQ 736 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ GD++++M ++ Sbjct: 737 TAGVQGMKFRAGDELLAMDVI--------------------------------------- 757 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +L V+ +GF KRT+ ++R+ R+G G++A ++ +E G Sbjct: 758 ------------WGETDKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLT--DERGT 803 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V++ DQI+ + G +IR V+E+++ R T+GV + + ++S+ R E+ Sbjct: 804 LVGAVVVSEEDQIMAIMKSGKVIRSNVSEVKLTGRTTQGVTLAKPDAGDEIISIARNAET 863 Query: 901 EIVDEAES 908 E + ++ Sbjct: 864 EDEADGDT 871 >gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] Length = 841 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 336/911 (36%), Positives = 522/911 (57%), Gaps = 97/911 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP+VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G G+K A+ TGRG ++IR Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ ++ IVVTE+PYQV+ + +L+K ++LV+E R+ I D+RDES R R+V Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FSVN +AL +P+ L ++ FV R +VV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G + + + + IIRF P+ Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L++VQ AIL L L R+ + + E EI++ Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + DE +N Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRAV-GRNSQGVRG 691 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I L + D+V+ M + + Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838 +E+ +L VSE G+GKR+ D +RI+NR GKG++ +++ + Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA+ V + + +++++ G IR+ ++ +RI RAT+GV + + + + +V ++ Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818 Query: 899 ESEIVDEAEST 909 + + + E Sbjct: 819 KEDDDESTEEA 829 >gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] Length = 820 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 370/846 (43%), Positives = 532/846 (62%), Gaps = 32/846 (3%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE +GI V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R LI+G GNFGS+DGD AA Sbjct: 62 DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ A LL D+ K+TVDF PNYD +EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG V +IDNPD LD LM +I+GPDFPTG VILGR GI+ AY TGRGS Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I I DLRDESDR+G Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R V+LN L+++T+LQ+ F V +AL +P+ TL L+ ++ + + Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR+ L+ Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 T LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ L +I+QE+L +K+ RRTRIV ++ +ED I D+V+ ++H GY Sbjct: 456 KAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+PLS Y +QRRGG+G + + +EDFVT L + STH +LFF++ G +Y K + +P Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 QARG ++N+L++ QGE++T ++P D + + Y+ FAT+ G V++ L+++ Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G IA+ L D+++ V+ +I++ T+ G +RFP + +R GR + GV+G Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL++GD+VI+M + + + + + + + Sbjct: 695 ISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHA 754 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E C + E I+ V++ G R D +R+ +G+R +V + E+ ++ Sbjct: 755 IEMC--MVTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASV--SRV 810 Query: 847 VNDNDQ 852 V D+D+ Sbjct: 811 VKDDDE 816 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 A+ + K + + R + +E + + E ++L ++ ++ Sbjct: 453 AELKAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITH 512 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 +G+ KR + R G+G+ + + + + + + +D ++ +++G + + Sbjct: 513 RGYIKRLPLSTYHSQRRGGRGMTLINAHEEDF---VTGLHVTSTHDYLLFFTNRGRMYAI 569 Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ R +G V + + + E+V ++ ++ + + ++ Sbjct: 570 KAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDT 615 >gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] Length = 883 Score = 824 bits (2129), Expect = 0.0, Method: Composition-based stats. Identities = 353/933 (37%), Positives = 529/933 (56%), Gaps = 109/933 (11%) Query: 1 MTEHIISSDEE-----------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 MT+ + E I SV + EMQ SYL YA++VI+GRA+P++RDGL Sbjct: 1 MTDDLTPEPSTPEILGENGLAIEHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHRR+L+ M G ++ + KC+R+ G+VMGK+HPHG+ AIYDAL R+ QDWSLR Sbjct: 61 KPVHRRVLYAMYDGGYRPDRAFSKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L+ GQGNFGS DP AA RYTECR+ A ++ D+ KDTVDF+ NYDG QEP +L + Sbjct: 121 LVAGQGNFGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPS 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDF 225 R+PN+LVNG GIAVGMATNIP HNL EV +G +D+PD + ++ II+GPDF Sbjct: 181 RFPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PTGA ILG GI++AY TGRGSI +R + ++E+ +R +VVTE+PYQVN + KIA Sbjct: 241 PTGATILGHRGIEDAYRTGRGSITMRAIVNVEEIQ-NRICLVVTELPYQVNPDTLALKIA 299 Query: 286 ELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 ELV++ R+ IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+AL Sbjct: 300 ELVKDGRVQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLAL 359 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P ++ ++ +VA + EV+VRRT +LL +A + H+ G A+ LD+V+ +I Sbjct: 360 VDGVPRTLSIDAFIRHWVAHQLEVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALI 419 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R SP+ + AR+ L++ + + E+Q AIL ++L R Sbjct: 420 RRSPDADRARQGLIE--------------------------MLDIDEIQATAILNMQLRR 453 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L R +I +E + L EI E DIL+ SR I+ EL + + RRT ++ Sbjct: 454 LAALQRQEIIDEHDKLEKEILEYQDILAKESRQRQIVSDELNELVAKYGDERRTTVLPHA 513 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ++ ED I E+MVVT++ GY KR YRAQ+RGGKG G +R++D V F+ + Sbjct: 514 GEVSMEDLIAEEEMVVTITRGGYAKRTRSDNYRAQKRGGKGVRGAQLREDDIVDHFFVTT 573 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++LG VY+ K + LP G A+G+ + N+L+ GE+I ++ + + + Sbjct: 574 THHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD- 632 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLT 699 Y+V AT+ G V++ +LS++ G IA+ L DE++S +D++L Sbjct: 633 --YLVLATRRGTVKKTRLSEYDSNRSGGVIAINLREDADGQPDELVSARLVDATDDLILV 690 Query: 700 TKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 ++ GQ +RF S +R GR + GV G+ + D++++M +V Sbjct: 691 SRKGQSIRFTASDEAMRPL-GRATSGVTGMKFREDDELLAMDVVRDG------------- 736 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 + V+E GF KRTS ++ Sbjct: 737 ----------------------------------------AHLFVVTEGGFAKRTSVDEY 756 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ R G GI+ ++ + G LV +++D+++++ ++G ++R VN++ + R T Sbjct: 757 RVQGRGGLGIKVANLVEA--RGDLVGALVTDEDDEVLVIMERGKIVRSAVNQVHLTGRTT 814 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +GV K++R+++V R E + D+ +S E Sbjct: 815 QGVTFAKPDKNDRIIAVARNVERNLGDDIDSEE 847 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 96/260 (36%), Gaps = 18/260 (6%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 D +V + G VK+ LS Y + R GG + + +L ++ S Sbjct: 632 DYLVLATRRGTVKKTRLSEYDSNRSGGVIAINLREDADGQPDELVSARLVDATDDLILVS 691 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + + + + + + + + ++ T+ Sbjct: 692 RKGQSIRFTASDEA-MRPLGRATSGVTGMKFREDDELLAMDVVR------DGAHLFVVTE 744 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRF 708 G +R + ++ ++ G + +K+ + D ++ +++++L+ + G+ VR Sbjct: 745 GGFAKRTSVDEY-RVQGRGGLGIKVANLVEARGD-LVGALVTDEDDEVLVIMERGKIVRS 802 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ + GR + GV K D++I++A + + D S + + D Sbjct: 803 AVNQV-HLTGRTTQGVTFAKPDKNDRIIAVARNVERNLGDDIDSEESGEGSDGGAVTTSD 861 Query: 769 TEEITSLKNDSSVEGNISEE 788 ++ + SEE Sbjct: 862 DQQHPDDAVVTPDLSTGSEE 881 >gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] Length = 875 Score = 824 bits (2129), Expect = 0.0, Method: Composition-based stats. Identities = 354/896 (39%), Positives = 513/896 (57%), Gaps = 90/896 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + I V ++ EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M G Sbjct: 29 PEIPQHGRIEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRP 88 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ Y KCAR+ G+VM YHPHG++AIYDA+ R++Q WS+R LI+GQGNFGS D PAA Sbjct: 89 DRSYNKCARVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAA 148 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+Q A L+ D+ +DTVDF PNYDG +P VL AR+PN+LVNG GIAVGMA Sbjct: 149 PRYTECRMQPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMA 208 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243 T IP HNL EV +GC ++DNP+ + L+++I+GPDFPTGA+I+GR+GI++AY T Sbjct: 209 TQIPPHNLREVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIMGRSGIEDAYRT 268 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +R V +E+ R +VVTE+PYQVN A+ KIAELV+ ++ IADLRDE Sbjct: 269 GRGSITMRAVVEVEEIQ-GRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDET 327 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P + ++ +V Sbjct: 328 SGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPINAFVRHWV 387 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + EV+VRRT+Y L +A ++ H+L GL A+ LDEV+ +IR SP E AR LM Sbjct: 388 DHQVEVIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLM---- 443 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + EVQ RAIL+++L RL L R I +E + L Sbjct: 444 ----------------------DLLDIDEVQARAILDMQLRRLAALERQKIIDEHDRLQA 481 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I++ DIL++ +R II +EL ++ ++ RRT IV ++ ED I E++VVT+ Sbjct: 482 LIEDLEDILATPARQRTIISEELAAIVEQYGDERRTEIVPSDAEVNMEDLIPDENVVVTI 541 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR+ + YR+QRRGGKG G +R +D V F TH +LFF+ G VY+ + Sbjct: 542 TRGGYAKRIRVDAYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRAR 601 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 W LP GS ++G+ + NI++ E+I ++ + Y+V ATK+G V++ +L Sbjct: 602 AWELPEGSRDSKGQHVANIMAFGPDEKIAQVLTIKDY---QAAPYLVLATKNGLVKKTRL 658 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 +++ G IA+ L DE++ E + +DIL+ ++ GQ +RF S IR GR Sbjct: 659 TEYDSPRSGGLIAVNLREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPM-GRA 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ D++++M +V D + Sbjct: 718 TSGVTGMRFRGDDELLAMRVVPSDAEDAE------------------------------- 746 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + V + G KRT+ +R+ R G G++ S ++ G Sbjct: 747 -------------------VFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKAS--DKGGD 785 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 LV V D++++V G ++R V+E+R+ R T GV K E +V+V R Sbjct: 786 LVGALVVGQQDEVMVVMSSGKVVRSRVDEVRMTGRDTSGVRFADPGKKEHIVAVAR 841 >gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803] gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803] Length = 878 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 353/892 (39%), Positives = 522/892 (58%), Gaps = 68/892 (7%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KC Sbjct: 14 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R Sbjct: 74 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133 Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 L+ LL+D+ +TVD+ N+DGS QEP VL +R P +L+NG GIAVGMATNIP H Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++ G +A+I+NP++ LM +I GPDFPTG ILGRTGIK Y +GRGS+ +RGV Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 253 Query: 254 SHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 + IE DR+ +++T +PYQ NKAAM+E+IAE+V +K++ I+D+RDESDR G R Sbjct: 254 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 313 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+EL+R A V+LN LY+ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 314 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 373 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L +R Sbjct: 374 ERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERH-------- 425 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+VQ AIL+++L RLT L D IR E L ++I + D Sbjct: 426 ------------------GLSDVQADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKD 467 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL R R+ GII+ EL ++D PRRT I++ ++D D I E VV ++ GY+K Sbjct: 468 ILGRRERVFGIIQDELGQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 527 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P Sbjct: 528 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 587 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+G ++ +L + + E IT+++ E ++ ++ T+ G ++R +LS F I Sbjct: 588 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 644 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727 +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + GVR + Sbjct: 645 SNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSM 703 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L GD ++SM ++ + + + S Sbjct: 704 NLRDGDALVSMDVLP-----------------------------VELADRVAQSSEDDSG 734 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E ++L S G GKR FR+ R+G G+RA E ALV + + Sbjct: 735 EDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTEADALVGLRVL 792 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++LVS+KG ++R + I SRA GV + K +R+ V + Sbjct: 793 GAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLVPP 844 Score = 91.8 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 98/301 (32%), Gaps = 27/301 (8%) Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 + L + + I + + ++ + + G +R R+ + + Sbjct: 451 IRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLR----DRHAIPRRTEILDLGGGLD 506 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738 D ++ E ++L T+ G R P+S R + G G + V I Sbjct: 507 D----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFIGC 561 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 D + Y + E I+ + Sbjct: 562 NDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLLAVSEFNDDT 621 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L +++ GF KRT F SN G+ A + + AL V D +++ S Sbjct: 622 DLLMLTQGGFIKRTRLSAF--SNIRSNGLIAIGLEEG---DALTWVRLAVPGDSVLIGSR 676 Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSV--------ERIRESEIVDEAES 908 G I R+ +E+R R +GV + + +VS+ +R+ +S D E Sbjct: 677 AGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSSEDDSGED 736 Query: 909 T 909 Sbjct: 737 E 737 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G++KR LS + R G + + + D +T + + SVL Sbjct: 617 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVPGDSVLIG 674 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------- 636 S G ++ L ARG +N L ++P Sbjct: 675 SRAGMTIHFRLSDDELRPLGRTARGVRSMN-LRDGDALVSMDVLPVELADRVAQSSEDDS 733 Query: 637 --PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEILSVETCT 691 E + +V+ A+ G +R ++ F R+G AMK D ++ + Sbjct: 734 GEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVLG 793 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 ++LL ++ G VR +I R + GVR L KGD++ + +V +E Sbjct: 794 AGEEVLLVSEKGVIVRTSADSI-PQQSRAATGVRLQRLDKGDRLSEVVLVPPEAESDEEE 852 Query: 752 ICYMKHMSAQRRLISGDTEEITSLK 776 + S E + Sbjct: 853 ADAEASDAPVVGADSNAAEPSSDQD 877 >gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT] gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT] Length = 843 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 365/901 (40%), Positives = 525/901 (58%), Gaps = 86/901 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I V I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Sbjct: 2 NNEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G IDNPDI + LM I+GPDFPT +I+G++GIK AY TGRG +VI Sbjct: 182 PPHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVVI 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDRQG R+ Sbjct: 242 RSKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LNQLY++T +Q F + M+AL +P +L +LK ++ F+EEV+ Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L+KA RAH+L GL IA+ ++DEV+++IR S AR LM + Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTGL R+ I E L IK +I Sbjct: 412 ----------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549 LS++ LL IIK EL +K + RRT IV G + + ED I +D+V+T++H GY+K Sbjct: 456 LSNKDLLLKIIKDELNEIKIKYGDERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y AQRRGG+G + +++DFV + STH ++LFFS+ G VYK K +++P Sbjct: 516 RLPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G LIN+L L + E+I Sbjct: 576 GRTAKGMNLINLLPLEKNEKIQN------------------------------------- 598 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++ ++ + +++ TK G + + G+ I+L Sbjct: 599 --------------VIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSI---RKNGLNAINL 641 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D++IS V D + + + + + + E Sbjct: 642 RENDELIS---VRVTTGDCNIIYATKNGYAIKFDENDARPMGRNATGVKAITLRDDDEVV 698 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+ +L VSE G+GKRT ++ + R GKG+ +S+ + G L+ V D Sbjct: 699 SMEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVED 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 D+++L++D G IR+ V++I + SR GV + T ++E+VV++ ++ +E E S Sbjct: 757 EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITEEEMEEGSN 816 Query: 910 E 910 + Sbjct: 817 D 817 >gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 827 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 360/890 (40%), Positives = 545/890 (61%), Gaps = 71/890 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ K I V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + EWNK Sbjct: 2 KDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD++ RMAQ +SLR LI+GQGNFGS+DGDP AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH +L +L K+T+DF NYDG+ + P +L + PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++GC+A + NP I L LM I GPDFPT +I G+ GIK AY TG+G I+ Sbjct: 182 IPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKII 241 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +IE +E +++ E+PYQVNK+ ++EKIA LV+EK+I I ++RDESD+ G Sbjct: 242 VRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++K+ + +ILNQLY TSLQ+ F +NMVAL+ KP+ L ILK F+ R+++ Sbjct: 302 RIVIDIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ + L K+ + H+L G AIA+ N++ ++ +I+ S N A+ Sbjct: 362 IKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAK-----------KKL 410 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 I+ +++ + + Y S Q+ AIL ++L +LT L + I E N L + + Sbjct: 411 KKINWKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLK 470 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 ILS+++ L I++EL +K + R+T+I+ + ++ ED IV+E +VVT+S+ GYV Sbjct: 471 KILSNKNILEKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYV 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K P+S Y AQ+RGG+G+S ++ED++T+L + ++H ++L FSS G +Y KV++LP Sbjct: 531 KYQPISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ARGK ++N+L L ERITTI+P + +SS N + AT G V++ L F + Sbjct: 591 TSRNARGKPIVNLLPLTSKERITTILPISKYKSSIN---IFMATALGFVKKTSLIQFKKP 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 SG IA+ L D+++ V T N+I + T G+ V+F IR GR + G+RG+ Sbjct: 648 RNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKM-GRTASGIRGMK 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+++S+ + D Sbjct: 707 ITNNDRLVSLLVPNKKDD------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL V+ G+GKRT+ F I +R+ KG+ + V++ N G ++ V Sbjct: 725 -----------ILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKN--GVVIGAIQVK 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 NDQI+++++ GTL+R V+EI I R T+GV++ T K E+VV ++++ Sbjct: 772 QNDQIMIITNAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLS 821 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 15/204 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LG+VK+ L ++ R G + +R D + + + + + ++ F+S G V + Sbjct: 631 TALGFVKKTSLIQFKKPRNSG--IIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFS 688 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + I + ++ ++ T +G +R + Sbjct: 689 EKTIRKMGRTASGIRGMKITNNDR---------LVSLLVPNKKDDILIVTANGYGKRTNI 739 Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + F +R+ K + + ++ Q + I++ T G VR +S I + R Sbjct: 740 NQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILK-R 798 Query: 720 NSVGVRGISLAKGDQVISMAIVLH 743 N+ GV I K ++V+ + + + Sbjct: 799 NTQGVILIRTIKKEKVVGLQKLSN 822 >gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974] gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974] Length = 826 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 359/907 (39%), Positives = 510/907 (56%), Gaps = 94/907 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE +S I V + EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTEPTDTS--PPRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG++AIYDAL RMAQ WSLR LI+GQGNFGS Sbjct: 59 QDQGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A ++ D+ +TVDF PNYDG +EP VL AR PN+LVNG G Sbjct: 119 GNDGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D + L+A+ EI++GPDFPT +I+G G Sbjct: 179 GIAVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGTDG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ SG R +V+TE+PYQVN M+ IAE VR+ +I I Sbjct: 239 IADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+A+ P L Sbjct: 299 AQIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I++ +VA + EV+VRRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + + AR Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q RAIL ++L RL L R I + Sbjct: 419 GLME--------------------------LLDVDEIQARAILAMQLGRLAALERQKIFD 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I + Sbjct: 453 ELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQ 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 513 EDVVVTITETGYAKRTKTELYRSQKRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+L E+I ++ E + Y+V ATK G Sbjct: 573 GRVYRIKAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYE---DAPYLVLATKRG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 ++++L++F G +A+ L DE++ C+ ++D+LL ++ GQ +RF + + Sbjct: 630 LTKKSRLTEFDSNRSGGIVAVNLKDDDELVGAALCSADDDLLLVSEHGQSIRFHANDEQL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ + DQ+++M +V Sbjct: 690 RPM-GRATSGVLGMRFNEDDQLLAMNVVRDG----------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT ++ R GKG+ Sbjct: 720 ------------------------AYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYD 755 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + A+ +R+++ Sbjct: 756 RR--RGGLVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIA 813 Query: 894 VERIRES 900 V R E Sbjct: 814 VARNDED 820 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 13/222 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 +V + G K+ L+ + + R GG V ++D+D + + S +L Sbjct: 615 TYEDAPYLVLATKRGLTKKSRLTEFDSNRSGG--IVAVNLKDDDELVGAALCSADDDLLL 672 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 S G + + P R + + + N+ +++ + + Y++ A Sbjct: 673 VSEHGQSIRFHANDEQL-RPMGRATSGVLGMRFNEDDQLLAMNVVR------DGAYLLVA 725 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRF 708 T G +R L ++ R GK + + + + ++ T G +R Sbjct: 726 TSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITSGGGVIRT 785 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 +R AGR + GVR ++LA+GD++I++A A E Sbjct: 786 AARQVR-RAGRQTKGVRLMNLAEGDRLIAVARNDEDSAGSGE 826 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 59/211 (27%) Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 DY + + + A R + + + + + + R ++L +E ++T++E Sbjct: 463 DYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQEDVVVTITET 522 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRV 865 G+ KRT + +R R GKG++ + + +VA F V + +D I+ + +G + R+ Sbjct: 523 GYAKRTKTELYRSQKRGGKGVQGAAL----KQDDIVAHFFVCSTHDWILFFTTRGRVYRI 578 Query: 866 PVNEIRIA-----------------------------------------------SRAT- 877 E+ SR T Sbjct: 579 KAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTE 638 Query: 878 ------KGVVIFSTAKDERVVSVERIRESEI 902 G+V + D+ +V + Sbjct: 639 FDSNRSGGIVAVNLKDDDELVGAALCSADDD 669 >gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233] gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233] Length = 831 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 353/910 (38%), Positives = 509/910 (55%), Gaps = 97/910 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + E V I EMQ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+GM G Sbjct: 4 PNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSGFRP 63 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ VK +R+ G+VMG YHPHG++ IYD + RMAQ WSLR +I+GQGNFGS+ DPPAA Sbjct: 64 DRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDPPAA 123 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECRL + A +LD +G+ TVD PNYD EP VL AR PN+LVNG GIAVGMA Sbjct: 124 MRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAVGMA 183 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL EV V ++NP+ + L ME I+GPDFPTGA+I+G+ GI +AY T Sbjct: 184 TNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIVGKDGIADAYRT 243 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +R V +IE+ + R +VVTE+PYQVN ++E IA L ++ +I IAD+ DE Sbjct: 244 GRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADIADES 303 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VI LKR A A V+L L+++T+LQ+ F NM+A+ P L ++ +V Sbjct: 304 SDRIGMRLVITLKRDAVAKVVLANLFKHTALQTSFGANMLAIVDGVPRTLRLDQMISLYV 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 A + EV+VRRT+Y L+KA +RAH+L GL A+ LDEV+ +IR SP+ E ++ LM+ Sbjct: 364 AHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGLME--- 420 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + E+Q AIL+++L RL L R I +EL L Sbjct: 421 -----------------------LLDVDEIQATAILDMQLRRLAALERQRIIDELAELER 457 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R II+ EL D+ RRTR+V D+ ED I ED+VVT+ Sbjct: 458 VIADLKDILAKPERQRAIIRDELTEAVDKHGDDRRTRLVPYDGDVSVEDLIAVEDVVVTI 517 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR +YRAQRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 518 TRTGYAKRTKTDLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAK 577 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + LP + ARG+ + N+L+ ERI ++ P Y+V ATK G V++++L Sbjct: 578 AYELPEANRNARGQHVANLLAFQPDERIAEVIQIPHY---QAAPYLVLATKGGLVKKSEL 634 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + F G +A+ L DE++ C D+LL + GQ +RF + +R GR Sbjct: 635 AAFDSNRAGGIVAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPM-GRA 693 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ GD+++SM++V Sbjct: 694 TSGVLGMRFNAGDELLSMSVVYEG------------------------------------ 717 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L +E+G+ KRT ++ + R GKG+ + G Sbjct: 718 -----------------AQVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRR--RGK 758 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V+ + ++ ++ +IR E+R A R T GV + + ++ + +V++ R Sbjct: 759 LVGALIVDLDTEVYAITSGAGVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIARNA-- 816 Query: 901 EIVDEAESTE 910 D+A++ + Sbjct: 817 ---DDADTVD 823 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 13/224 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ L+ + + R GG V +RD+D + + + +L S+ G Sbjct: 618 PYLVLATKGGLVKKSELAAFDSNRAGG--IVAVNLRDDDELVGAVLCDANADLLLISAEG 675 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + N G+ + ++ + V+ AT+ G Sbjct: 676 QSIRFHATDETL-RPMGRATSGVLGMRFNAGDELLSMSVV------YEGAQVLVATERGY 728 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + ++ R GK + + +++ + ++ T +R + Sbjct: 729 AKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGALIVDLDTEVYAITSGAGVIRTQAREV 788 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 R A R ++GVR ++L++GD ++++A D Sbjct: 789 R-KAKRQTMGVRLMNLSEGDSLVAIARNADDADTVDSGPAGGSS 831 >gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1] gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1] Length = 856 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 374/844 (44%), Positives = 542/844 (64%), Gaps = 20/844 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 7 EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+AA+YD + R+AQ +S+R L++GQGNFGS+DGD PAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL D+ K+TVDF NYDGS QEP VL R PN+LVNGG GIAVGMATNIP HN Sbjct: 127 MARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D CVA++D+P++ +++L+E + PD PTG +I G GI A+ TGRG +V+R + Sbjct: 187 LREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGTAGIHQAFRTGRGRMVLRARA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ + DRE+IVVTE+PYQVNKA ++EKIAELV+E+R+ I++LRDESD++G R+V+EL Sbjct: 247 EVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG + +++LN LYR+T +Q++F +N+VAL+ +P L +L+AF+ R EVV RRT Sbjct: 307 KRGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQPRTLNLRQVLEAFIRHRREVVTRRTI 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S P A+ EL+ R W + ++++ Sbjct: 367 YELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLERA 426 Query: 435 DDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ G LSE Q +AIL+LRL RLT + +D I E ++L I Sbjct: 427 GAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLERI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL S RL+ +I++EL++++D+ R+T I E ++ ED I EDMVVT+SH Sbjct: 487 AELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL YRAQRRGG+G+S M+DEDF+ LFI +TH ++L FSS G Y KV+ Sbjct: 547 HGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 LP GS +RG+ ++N+L L + ERI ++P E + + +V AT++G V++ LS Sbjct: 607 ELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFD---EDHFVFMATRNGTVKKTPLSH 663 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA++L D ++ E + +++L + G+ +RF S +R GR + GV Sbjct: 664 FSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAM-GRTAGGV 722 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L G +VI++ I+ D Y K + G + G Sbjct: 723 RGIRLESGQRVIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGR 782 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++ I+ VS G RT D R+ +G++ + + LV + Sbjct: 783 VV---GAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAE---QLVGL 836 Query: 845 FPVN 848 V Sbjct: 837 ERVE 840 >gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1] gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1] Length = 899 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 340/917 (37%), Positives = 510/917 (55%), Gaps = 61/917 (6%) Query: 1 MTEHII--SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 MTE I +V + MQ SY+ YA+ VI+GRA+PD+RDGLKPVHRR+L+ Sbjct: 1 MTETPPEGPGQTSAGGRIETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G ++ + KCAR+ GEVMG YHPHG++AIYD L R+AQ W LR LI GQGNFG Sbjct: 61 AMYDGGYRPDRGFSKCARVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S DP AA RYTECR+ A ++ D+ +DTVDF PNYDG QEP +L +R+PN+LVNG Sbjct: 121 SPGNDPAAAMRYTECRMAPLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGR 234 GIAVGMATNIP HNL EV G +++PD + L+E ++GPDFP GA+I+GR Sbjct: 181 SAGIAVGMATNIPPHNLREVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIVGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI+ AY TGRGSI R V +++ + R +V+TE+PY VN + +KIA+L ++ Sbjct: 241 EGIEQAYRTGRGSITQRAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQ 300 Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD++D S R G ++V+ LKR A A V+LN L ++T LQ+ FS NM+AL P + Sbjct: 301 GIADVKDNTSSRTGQQLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLS 360 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 + + +V + +V+ RRT + L KA + AH+ GL A+ LD V+ +IR SP + A Sbjct: 361 IDQFISNWVEHQIDVIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDA 420 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R+ L+ + + E+Q AIL+++L RL L R I Sbjct: 421 RQGLI--------------------------RLLEIDEIQANAILDMQLRRLAALERQKI 454 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + L L + I + DIL++ +R I+ EL + + RRT+I+ D+ ED I Sbjct: 455 IDRLAELELIIADLEDILANVARQRQIVGDELDEIVAKYGDDRRTQIIAADGDLSMEDLI 514 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E++VV+++ GY KR + YR Q+RGGKG G +R +D V + H +LFF+ Sbjct: 515 PDEELVVSITRGGYAKRTLANEYRTQKRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFT 574 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + LP + A+G + +LS E I ++ + E Y+V AT+ Sbjct: 575 TAGRVYRIKAYNLPEAARDAKGGHVAGLLSFQPDESIAQVLAIRDYE---QAPYLVLATR 631 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G +++ +L D+ ++G IA+ DE++ E E+DILL ++ GQ +RF Sbjct: 632 SGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGAELVNSEDDILLVSRKGQAIRFRADD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GV G+ GD ++SM+++ + Sbjct: 692 NQLRPM-GRATSGVTGMKFRDGDSLLSMSVIRAEHVAAEIAA------------------ 732 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ D++ ++KEQF+ T+++ GF KRT ++R+ +R G GI+ Sbjct: 733 GLSEANEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTM 792 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-EIRIASRATKGVVIFSTAKDE 889 ++ + G LV F V D D+++ ++ G ++R P+N + R R+T+GV S K + Sbjct: 793 ALANADRGG-LVGAFIVVDGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSPKKGD 851 Query: 890 RVVSVER-IRESEIVDE 905 V V R + E+ DE Sbjct: 852 SVAVVARSVEAREVDDE 868 Score = 61.0 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 39/285 (13%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G +K+ L Y + R+ G D++ + + S L Sbjct: 620 YEQAPYLVLATRSGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGAELVNSEDDI-LLV 678 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE------------ 640 S G + + P R + + + G+ + ++ + Sbjct: 679 SRKGQAIRFRADD-NQLRPMGRATSGVTGMKFRDGDSLLSMSVIRAEHVAAEIAAGLSEA 737 Query: 641 -----------------SSWNNLYVVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSR 681 +V T G +R K+S++ G M L + Sbjct: 738 NEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMALANA 797 Query: 682 DE--ILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISM 738 D ++ +++L T GQ VR PI+ R GR++ GV+ +S KGD V Sbjct: 798 DRGGLVGAFIVVDGDEVLSITASGQVVRSPINSDFRA-TGRSTQGVKFVSPKKGDSV--A 854 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 + +A + A I GD E + + E Sbjct: 855 VVARSVEAREVDDEIVPGTEVADDVTIDGDGEHGAPSETTTEDES 899 >gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii] Length = 824 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 355/902 (39%), Positives = 532/902 (58%), Gaps = 89/902 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E+ ++ I V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM Sbjct: 1 MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + + N + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++G GNFGSV Sbjct: 57 HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K A ++ D+ K+TV+F NYDGS +EP VL +RYPN+LVNG Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D A +DNPDI + LM+ ++GPDFPTG ILG TG++ A Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I +R I +T +R ++++TEIPYQVNK ++E+IAE+V+ K I I+DLR Sbjct: 237 YETGKGIIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+VIEL++ + V LN LY++T LQ+ F +NM+AL +P +L L Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A + E++ RRT++ L KA R H+L L A+ ++D V++II+ + +PE AR L+ Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIA- 414 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 T +E+Q R+I ++L RLTGL D I E ++L Sbjct: 415 -------------------------TYDFTEIQARSIFTMQLQRLTGLEIDKIHEEADNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMV 539 +I E IL + IIK EL +KD+ D PR + + D+++ED I ED V Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQDIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDTV 509 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTV++ Y+KR+ L Y+ Q RGG G SGV + D+DFV + + STH LFF++LG V+ Sbjct: 510 VTVTNNPYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K K + LP GS Q++G ++N L+ GE++ + + + + Y+ F TK G V+R Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFD--AEDHYLNFVTKRGIVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++++ I ++G IA+ L DE+L ++ ILL G+ + F + IR GR Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLLTKSTNGHKHILLGASNGKAIHFLETDIRQI-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ + ++++ A+V + D Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 IL ++E +GK TS ++R+ N GKG++ +V+ N G Sbjct: 715 --------------------ILVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKN--G 752 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L + V +++ II+VS +G IR+P+++I RAT+GV I + D++V ++ + Sbjct: 753 KLKTLRKVTNDEDIIVVSHRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812 Query: 900 SE 901 + Sbjct: 813 QD 814 Score = 95.6 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 10/215 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDE 750 E+ ++ T R + + R VG+ G+ L D V I+M + Sbjct: 506 EDTVVTVTNNPYIKRMNLDEYK-LQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTN 564 Query: 751 --RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 R+ +K + I + N E S ++ ++ ++ V+++G Sbjct: 565 LGRVFKLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDAEDHYLNFVTKRGI 624 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 KRT ++ N GI A + + L+ N + I+L + G I Sbjct: 625 VKRTHINNY--KNIRQNGIIAISLRE---DDELLLTKSTNGHKHILLGASNGKAIHFLET 679 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +IR R GV DE +V + E Sbjct: 680 DIRQIGRTATGVRGMDIPDDEEIVGFAVVDGIEDD 714 >gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] Length = 862 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 378/842 (44%), Positives = 530/842 (62%), Gaps = 19/842 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 7 EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +++R +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL D+ K+TVD+ NYDGS EP VL R PN+LVNGG GIAVGMATNIP HN Sbjct: 127 MSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV+D CVA+ID+ +D+DALM+ + GPD PT +I G GI AY TGRG +V+R + Sbjct: 187 IREVIDACVALIDDDSLDVDALMQYLPGPDLPTAGIINGTAGIHEAYRTGRGRMVMRARA 246 Query: 255 HIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ + +I+V+E+PYQVNKA +LEKIAELV+EKR+ I +LRDESD+ G RVVIE Sbjct: 247 RIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +V+LN LY++T LQ++F +NMVAL +P+ L IL AFV R EVV RRT Sbjct: 307 LRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQPKLLNLRQILDAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAHVL GLA+A+AN+D V+ +I+ SP P A+ LM R W + D+++ Sbjct: 367 IFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLER 426 Query: 434 ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D +G DG LS Q +AILELRL RLTGL ++ I E L +I E Sbjct: 427 ADATTPDDLSPDVGLGEDG-YRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL S RL+ +I++EL++++++ RR+ I+ LD+ ED I +D+VVT+SH G Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDERRSEIIPQALDLTLEDLITPQDVVVTLSHSG 545 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL YRAQRRGG+G+S M+D DFV LF+ +TH ++L FSS G Y KV+ L Sbjct: 546 YAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKCYWLKVYEL 605 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS Q+RGK ++N+L L ERI ++P E + + +V AT +G V++ LS F Sbjct: 606 PQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFD---DAHFVFMATHNGTVKKTPLSHFS 662 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L + D ++ V D++L + G+ +RF S +R GR + GVRG Sbjct: 663 RPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAM-GRTAAGVRG 721 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L G +VI++ I+ D Y K + G S G + Sbjct: 722 IRLEPGQRVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRNGEVV 781 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E I+ ++ G RT D +R+ +G++ + + LV + Sbjct: 782 ---GAVQVADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISLDEDET---LVGLER 835 Query: 847 VN 848 + Sbjct: 836 IE 837 >gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium lipophiloflavum DSM 44291] gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium lipophiloflavum DSM 44291] Length = 868 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 339/913 (37%), Positives = 515/913 (56%), Gaps = 95/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ ++ D I + I DEMQ SY+ YA++VI+GRA+PD+RDG+KPVHRR+++ M Sbjct: 1 MSDDTLTGDG--FDRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ GE M HPHG++AIYD L RMAQ WS+R LI+GQGNFGS Sbjct: 59 YDSGYRPERSYVKSAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSP 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC++ A ++ D+ ++TV+F PNYDG +EP +L +R PN+L+NG G Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSG 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DN LDA+ME ++GPDFPT +I+G TG Sbjct: 179 GIAVGMATNIPPHNLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIVGDTG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE+ R+ IV+TE+PYQVN + IA+ + ++ Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEIGS-RQVIVITELPYQVNPDNFIANIADHIANGKLPGA 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A V+LN LY+++ L++ FS NM+++ P L Sbjct: 298 SRIDDESSDRVGMRIVVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 358 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q IL ++L RL L R I + Sbjct: 418 GLIE--------------------------LLDVDEIQANEILSMQLRRLAALERQKIVD 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + +I + DIL+S R I+ EL + + RRTR++ D+ +ED I R Sbjct: 452 DLAEIERQIADLKDILASPERQRAIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIAR 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ+RGGKG G ++ +D V + FI STH +LFF++ Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNF 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L ERI ++ E + Y+V AT+ G Sbjct: 572 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEERIAQVIQIHSYE---DAPYLVLATREG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D+++ + E+D+LL ++ GQ +RF + Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M +V D Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTVVHDND---------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT+ ++ R G G+ + Sbjct: 720 -------------------------FLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYT 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V + DQI ++ G +IR V +IR +SRAT GV + +D +++ Sbjct: 755 P--KRGKLIGALAVEEEDQIFAITSAGGVIRTEVAQIRPSSRATMGVRLVDLGEDVELLA 812 Query: 894 VERIRESEIVDEA 906 +++ E E +EA Sbjct: 813 IDKNVEDEGEEEA 825 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 14/267 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + + + D + + S VL Sbjct: 613 HSYEDAPYLVLATREGRVKKSRLTDYESARSAG--LIAINLNEGDQLIGAALASDEDDVL 670 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R A + + +++ + +N +++ Sbjct: 671 LVSEQGQAIRFTADDEQL-RPMGRATAGVKGMRFRGDDQLLAMTVV------HDNDFLLV 723 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R G M R +++ +E+ I T G +R Sbjct: 724 ATSGGYGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGALAVEEEDQIFAITSAGGVIR 783 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ IR + R ++GVR + L + +++++ D +E K Sbjct: 784 TEVAQIRP-SSRATMGVRLVDLGEDVELLAID-KNVEDEGEEEATAVAKGEKTLAEAQEV 841 Query: 768 DTEEITSLKNDSSVEGNISEERCQELK 794 + N + ++ + Sbjct: 842 TSSGAPVNVNSVETDPVGPTHDYEDEE 868 >gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 904 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 353/910 (38%), Positives = 515/910 (56%), Gaps = 98/910 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I + EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 38 ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTEC Sbjct: 98 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+PD + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L I + Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P E Y+V AT+ G V++ L+++ Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F + +R GR Sbjct: 668 RQGGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPM-GRQ 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD++++M +V Sbjct: 727 TAGVQGMKFREGDELLAMDVV--------------------------------------- 747 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ + V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 748 ------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGS 793 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V ++DQI+ + G +IR V+E++ R T+GV K++ ++S+ R E Sbjct: 794 LVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEK 853 Query: 901 EIVDEAESTE 910 + + AES E Sbjct: 854 D-DESAESGE 862 >gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] Length = 907 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 340/905 (37%), Positives = 514/905 (56%), Gaps = 97/905 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 52 ERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYSK 111 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTEC Sbjct: 112 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 171 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 172 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 231 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+P+ + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 232 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 291 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 292 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSGRTGQ 350 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ ++ + +V Sbjct: 351 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQIDV 410 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT YL +A +R H+L GL A+ ++EV+++IR S E AR +LM+ Sbjct: 411 VARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLME--------- 461 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + +VQ AIL ++L RL + I +E N L +I + Sbjct: 462 -----------------FLDIDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYN 504 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 505 DILAKPERQRRIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIPEENVVVTVTHSGFI 564 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 565 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 624 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P E Y+V AT+ G V++ L+++ Sbjct: 625 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 681 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C ++DI+L ++ G ++F + +R GR Sbjct: 682 RQGGLIAVRLMTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPM-GRQ 740 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ GD++++M +V Sbjct: 741 TAGVQGMKFRDGDELLAMDVV--------------------------------------- 761 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +L V+++GF KR++ ++R+ R+G G++A +++ G+ Sbjct: 762 ------------WGDSDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEG--RGS 807 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V+++DQ++ + G +IR V E++ R T+GV + K++ ++S+ E Sbjct: 808 LVGALIVSEDDQVMAIMKSGKVIRSDVAEVKRTGRNTQGVTLAKPDKNDEIISIALNAEK 867 Query: 901 EIVDE 905 + D+ Sbjct: 868 DDADD 872 Score = 77.9 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 93/249 (37%), Gaps = 13/249 (5%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI----VSTHTSVLFFSSLGFV 598 + G VK+ L+ Y + R+GG ++ + D I + ++ S G Sbjct: 665 TRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENADELIGAALCNADDDIMLVSRKGMS 724 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 K + P R A + + G+ + + ++ ++ T G + Sbjct: 725 LKFTANDEQL-RPMGRQTAGVQGMKFRDGDELLAMDVV----WGDSDKDLLVVTDEGFAK 779 Query: 659 RNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R+ +S++ N G A++L ++ ++++ ++ K G+ +R ++ ++ Sbjct: 780 RSAVSEYRLQGRNGYGVKALQLAEGRGSLVGALIVSEDDQVMAIMKSGKVIRSDVAEVK- 838 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV K D++IS+A+ D D+ + Sbjct: 839 RTGRNTQGVTLAKPDKNDEIISIALNAEKDDADDQNDVQPAQSEQSDSAEQQAEQPADVQ 898 Query: 776 KNDSSVEGN 784 ++ +G Sbjct: 899 NVNTESDGE 907 >gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946] Length = 846 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 371/896 (41%), Positives = 547/896 (61%), Gaps = 87/896 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + + I +++I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M + + Sbjct: 1 MDNIFNTNQDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLAI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+ ++GQGNFGS+DGD Sbjct: 61 SSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDGDNA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL DL KDTVDF PNYD S EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H L E++DG + +IDNP+ L+ +ME I+GPDFPT +I G+ GI AY TGR Sbjct: 181 MATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIFGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + IR +HIEK G+++ IVV E+PYQVNK ++E+I LV+EK I I+++RDESDR Sbjct: 241 GRVRIRAKTHIEK-KGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A +D++LN LY+ T+++ F V ++A++ +P+ FTLI +L+ F+ R Sbjct: 300 DGIRLVIELKREAMSDIVLNNLYKSTNMEVTFGVILLAIHNKEPKIFTLIELLQLFLRHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KA+ +AH+L GL IA+ N+DE++ +I+ S + ++A+ L++R Sbjct: 360 KTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSEVQ AIL++RL RLTGL RD I NEL L +EI+ Sbjct: 415 ---------------------FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQ 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL S + L +IK+ELL +KD+ + R T IV+ D++ ED I E MVVT++H Sbjct: 454 RLSDILRSEALLNNLIKEELLELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPL Y Q+RGGKG+ V D+DF+ F+ TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPLKQYEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N++ L E+I I+P + + + F TK+G ++R LS+F Sbjct: 574 IPEGSRTAKGKAVVNLIQLQADEKIMAIIPTTDFD---ETKSLAFFTKNGVIKRTNLSEF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 I G A+ LD D +++ + TQE ++ + TK G C+RF + R GR + GV Sbjct: 631 KNIRSVGVRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREI-GRTARGV 689 Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 GI + D V+ A++ + Sbjct: 690 TGIRFKEENDCVVGAAVIYN---------------------------------------- 709 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ +LTV+EKG GKRT++ ++R+ NR GKG+ A ++ + LV Sbjct: 710 ------------DQEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTP--KTADLVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V V+++ ++ ++ G +IRV + IR A R T GV + S + V S+ R + Sbjct: 756 VVIVDEDKDLMALTSSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLARCPK 811 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 12/240 (5%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G +KR LS ++ R G + D+ VT + ++ + G + Sbjct: 616 FTKNGVIKRTNLSEFKNIRSVGVRAITLDD-DDGLVTAKIVTQEAKNLFIVTKKGMCIRF 674 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V ARG I + + ++ T+ G +R Sbjct: 675 EVGDAREIGRTARGVTGIRF-------KEENDCVVGAAVIYNDQEELLTVTEKGIGKRTT 727 Query: 662 LSDF--IQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 ++ G IAMKL +++ V ++ D++ T G+ +R + IR AG Sbjct: 728 AEEYRLQNRGGKGVIAMKLTPKTADLVGVVIVDEDKDLMALTSSGKMIRVDMETIR-KAG 786 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GV+ +S+ D V S+A + + E + + + E +S + + Sbjct: 787 RNTSGVKVVSVEGKDVVQSLARCPKEEDEEPEIEGMDEEGAVPQEGSLLLEETNSSEELE 846 >gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 820 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 368/846 (43%), Positives = 534/846 (63%), Gaps = 32/846 (3%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE +GI V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R LI+G GNFGS+DGD AA Sbjct: 62 DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ A LL D+ K+TVDF PNYD +EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG V +ID+PD LD LM +I+GPDFPTG VILGR GI+ AY TGRGS Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I I DLRDESDR+G Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R V+LN L+++T+LQ+ F V +AL +P+ TL L+ ++ + + Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR+ L+ Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 T LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ L G+I+QE+L +K+ RRTRIV ++ +ED I D+V+ ++H GY Sbjct: 456 KAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+PLS Y +QRRGG+G + + +EDFVT L + STH +LFF++ G +Y K + +P Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 QARG ++N+L++ QGE++T ++P D + + Y+ FAT+ G V++ L+++ Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G IA+ L D+++ V+ +I++ T+ G +RFP + +R GR + GV+G Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL++GD+VI+M + + + + + + + Sbjct: 695 ISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHA 754 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E C + ++ ++ V++ G R D +R+ +G+R +V + E+ ++ Sbjct: 755 IEMC--MVTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASV--SRV 810 Query: 847 VNDNDQ 852 V D+D+ Sbjct: 811 VKDDDE 816 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + A+ + K + R + +E + + + E ++L + Sbjct: 448 LQQRIAELKAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVV 507 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + ++ +G+ KR + R G+G+ + + + + + + +D ++ +++G Sbjct: 508 IAITHRGYIKRLPLSTYHSQRRGGRGMTLINAHEEDF---VTGLHVTSTHDYLLFFTNRG 564 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908 + + ++ R +G V + + + E+V ++ ++ + + ++ Sbjct: 565 RMYAIKAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDT 615 >gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] Length = 894 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 350/909 (38%), Positives = 512/909 (56%), Gaps = 97/909 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I + EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 38 ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTEC Sbjct: 98 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+PD + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S + E AR LM Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLM---------- 446 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L I + Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++ Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P E Y+V AT+ G V++ L+++ Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F + +R GR Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPM-GRQ 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD+++ M +V Sbjct: 727 TAGVQGMKFREGDELLDMDVV--------------------------------------- 747 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ + V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 748 ------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGS 793 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V ++DQI+ + G +IR V+E++ R T+GV K++ ++S+ R E Sbjct: 794 LVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEK 853 Query: 901 EIVDEAEST 909 + + AE+ Sbjct: 854 DDDESAENA 862 >gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] Length = 828 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 375/854 (43%), Positives = 533/854 (62%), Gaps = 64/854 (7%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M ++ ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGS Sbjct: 1 MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD AA RYTE R+ K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG Sbjct: 61 VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNL EVVDG +A+IDNPDID++ LME I GPDFPT A I GR+GI Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATISGRSGIVE 180 Query: 240 AYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRG I +R + IE +E I+VTEIPYQVNKA ++EKIAELV+EKR+ I+ Sbjct: 181 AYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGISA 240 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G R+VIE++RG +V+LN LY T LQ +F +NMVAL+ +P F L +L Sbjct: 241 LRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQPRLFNLRDML 300 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FV R EVV RR+ Y L KAR+RAH+L GLAI++AN+DE++ +IR SP P A+ L+ Sbjct: 301 DCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAGLI 360 Query: 419 QRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGR 470 R+W D+ +++ + DG +L+E Q +AIL+LRL +LTGL Sbjct: 361 ARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGLEH 420 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 + I +E L +I E L IL+S RL+ +I++EL+ +++ R+T I D+ E Sbjct: 421 EKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDISME 480 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+V+T+SH GYVK PL+ Y AQRRGGKG++ M+DEDF+ L++ +TH ++L Sbjct: 481 DLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDTIL 540 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FS+ G +Y KV++LP+ S +RGK ++N+L L ERIT I+P + + +VV Sbjct: 541 CFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYP---EDKFVVM 597 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT+ G +++ L ++ + G IA+ L DE++ V+ +I+L + G+ VRF Sbjct: 598 ATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGKVVRFAE 657 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVRGI L +G +V+S+ + + + Sbjct: 658 EQVRSM-GRTATGVRGIRLEEGQRVVSLIVPREYEEEEAN-------------------- 696 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +LTV+E G+GKRT ++ +R+ KG+ + Sbjct: 697 -----------------------------VLTVTENGYGKRTPLSEYPAKSRATKGVVSI 727 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 VS+ N G++V V D ++I+L+S+KGTL+R VNE+ R T+GV + TA DE+ Sbjct: 728 KVSERN--GSVVGAMEVIDGNEIMLISNKGTLVRTRVNEVSTVGRNTQGVRLIRTADDEK 785 Query: 891 VVSVERIRESEIVD 904 VV ++RI E + + Sbjct: 786 VVGLQRIDEIDEDE 799 Score = 81.0 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 70/424 (16%), Positives = 148/424 (34%), Gaps = 27/424 (6%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + IR + E + Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDIS 478 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483 + + + + G L+E + + A D I + + Sbjct: 479 MEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDT 538 Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 + + + ++++ R T I+ Sbjct: 539 ILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRD-------YPE 591 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + VV + G +K+ PL Y R GG + + D+D + + I + ++ FS Sbjct: 592 DKFVVMATRKGTIKKTPLPEYSRPRNGG--IIALNLVDDDELIGVDITDGNGEIMLFSDA 649 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V + ++ A G + + L +G+R+ +++ E E N V+ T++G Sbjct: 650 GKVVRFAEEQVRSMGRTATG---VRGIRLEEGQRVVSLIVPREYEEEEAN--VLTVTENG 704 Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R LS++ +R+ K + + ++ N+I+L + G VR ++ Sbjct: 705 YGKRTPLSEYPAKSRATKGVVSIKVSERNGSVVGAMEVIDGNEIMLISNKGTLVRTRVNE 764 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GRN+ GVR I A ++V+ + + D D + + + Sbjct: 765 VSTV-GRNTQGVRLIRTADDEKVVGLQRIDEIDEDEVLIDGEVVAEEGETAAEDNTENQE 823 Query: 773 TSLK 776 S + Sbjct: 824 GSDE 827 >gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7a] Length = 833 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 374/906 (41%), Positives = 537/906 (59%), Gaps = 87/906 (9%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 I+ ++ + + ++ M++S+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q Sbjct: 12 EILQPEQTHSRLLEHRTVERVMEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQN 71 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G N K+VK ARI G+VMGKYHPHG++AIYD++ R+AQDW++R L++GQGNFGS+ GD Sbjct: 72 GNRSNAKFVKSARIIGDVMGKYHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGD 131 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL K A LL D+ K+TVDFR N+DGS QEP+VL A+ PN+L+NG GIA Sbjct: 132 PPAAHRYTEARLDKPAEELLADIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIA 191 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMAT+IPTHNLGE+VD V +IDNP+ +D L++ ++GPDFPTGA++ G + AY T Sbjct: 192 VGMATSIPTHNLGELVDATVELIDNPEATVDDLLKHVKGPDFPTGAIVYGGAPMWQAYQT 251 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS+ IR V++IE+T R +IVVTE+PY VNKA ++EKIAELV+EK+I I+DLRDES Sbjct: 252 GRGSVTIRAVANIEETKRGRHRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDES 311 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362 R RVVIELK+ A +LNQLY+ T+LQ+ F NM+AL K P L IL F+ Sbjct: 312 ARGNVRVVIELKKDAYPKKVLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFI 371 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R VV RRT++ L KA RAH+L G IA+ ++DEV++ IR S E A + L+ R Sbjct: 372 KHRRSVVRRRTEFELKKAEARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIAR-- 429 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q +AIL ++L RLTGL R+ I NEL L Sbjct: 430 ------------------------FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLA 465 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVT 541 I++ IL+ +L IIK EL+ +K++ RR++++ DE+ I ED VV Sbjct: 466 LIEKLKGILADEQEILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVL 525 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ Y+KR S YR Q RGGKG+ G+ ++ D + + TH +LFF++ G V++ Sbjct: 526 LTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRL 585 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P S QA+G A +N+L L E+IT I+ F +D ++ Y+ AT G +++ Sbjct: 586 KAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKFEKDA--KDDGYLFMATVKGTIKKTP 643 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + D+ I +G IA+KLD DE+ ++ + +DIL++T GQ +RF R GR + Sbjct: 644 VKDYANIRTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSM-GRAA 702 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L D V+ M I Sbjct: 703 RGVRGVRLRPNDSVVGMDIAND-------------------------------------- 724 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ +L +SE G+GK T +F R G GI+A V+ + G + Sbjct: 725 ---------------DRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTA--KTGPI 767 Query: 842 VAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++V + +D + +LVS +G IRV + +I + R T+GV I T+ D+ V SV + E Sbjct: 768 ISVKTIQQDDIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSER 827 Query: 901 EIVDEA 906 +E+ Sbjct: 828 SSNEES 833 >gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] Length = 917 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 356/908 (39%), Positives = 511/908 (56%), Gaps = 97/908 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I V + EM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y K Sbjct: 40 ERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 99 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTEC Sbjct: 100 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 159 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP H Sbjct: 160 RMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 219 Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 NL EV DG +D+PD + L+E I+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 220 NLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATILGHKGIEQAYRTGRGLIT 279 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 280 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSGRTGQ 338 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +VA + +V Sbjct: 339 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVAHQIDV 398 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT YL +A +R H+L G A+ +DEVV +IR S + ETAR LM Sbjct: 399 VARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLM---------- 448 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L I + Sbjct: 449 ----------------DLLDVDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYE 492 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + RRTRI+ +M ED I E++VVTV+H G++ Sbjct: 493 DILAKPERQRQIVGDELDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFI 552 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF+ G VY+ K + LP Sbjct: 553 KRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPE 612 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P E Y+V ATK G V++ +LS++ Sbjct: 613 GSRDSKGQHVANLLQFAPDEHIQTVLSIPNYEV---AEYLVLATKSGKVKKTRLSEYDSP 669 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRN 720 + G IA++L + DE++ C +DI+L ++ G ++F +R GR Sbjct: 670 RQGGLIAVRLMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPM-GRQ 728 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD ++SM +V Sbjct: 729 TAGVQGMKFREGDSLLSMDVV--------------------------------------- 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ + V+ +GF KRT+ ++R+ R+G G++A + + G Sbjct: 750 ------------WGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEG--RGE 795 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V+++DQ++ + G +IR VNE+ R T+GV + K + ++S+ R E+ Sbjct: 796 LVGALVVDESDQVLAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKGDEIISIARNAET 855 Query: 901 EIVDEAES 908 E E ++ Sbjct: 856 EDELEEQA 863 >gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] Length = 856 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 350/920 (38%), Positives = 518/920 (56%), Gaps = 98/920 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+II + + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEENIIMVPG-SGTKVIERDVKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 60 HERGNDPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ K A +L D+ KDT+D+ PN+D + +EP VL +R+PN+LVNG Sbjct: 120 DGDPPAAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVV G A++DNPDIDL LME ++GPDFPTG +I+GR+GI+ A Sbjct: 180 GIAVGMATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIMGRSGIRAA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + I + R +I++TEIPY VNK ++E IA+LV++KRI I+DL Sbjct: 240 YATGRGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLN 299 Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE S R G ++VIE+K+ A+ V+LNQLYRYT LQ V M+AL+ P+ +L +++ Sbjct: 300 DESSSRTGMKIVIEIKKDANPQVVLNQLYRYTQLQDTVGVIMLALDDGVPKIMSLKTVME 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ F+ EV+ RRT + L KA++R H+L GL AV +DE++ IR Sbjct: 360 RYIDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKG---------- 409 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + E+Q AI++L+L RL GL I EL Sbjct: 410 ---------------GFAEARQAVMDNFGFDELQADAIVKLQLGRLAGLEILKIEQELGE 454 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I + DILS+ + I+K +L ++ D+ RRT I +++ ED I E + Sbjct: 455 LREAIADYKDILSNDEHVKRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCI 514 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++H GY+KR L Y+AQ RGG+G G+ +D+DF +LF+ STH +LF + G VY Sbjct: 515 FTLTHEGYIKRTTLDTYQAQNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVY 574 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K +++P GS A+G ++N+L L +GE++T ++ ++ +N Y+ T+ G ++R Sbjct: 575 RLKGYQVPEGSRTAKGSHIVNLLQLQEGEKVTLMLQ-QSAKADEDNTYLTMVTRQGLIKR 633 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS F I ++G IA+ L+ D ++ ++I++ T G + F S R GR Sbjct: 634 TPLSQFRNIRKAGLIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAM-GR 692 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 GVR I L +GD VI + Sbjct: 693 TGHGVRVIRLREGDYVIGAGVCRPG----------------------------------- 717 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +LT++E G G+R+ D+RI+ R G GIR G Sbjct: 718 ------------------ATVLTITEDGKGRRSRVDDYRITKRGGLGIRNY------AKG 753 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR- 898 + + V++ D +IL+S G LIR+ ++I + SR GV + + ++V V R+ Sbjct: 754 GVAGIKIVDETDDLILISANGILIRLHASDINVQSRYGSGVRVMRLGEGDKVAMVARVDR 813 Query: 899 ---------ESEIVDEAEST 909 E++ DE+E + Sbjct: 814 DNEAETAKVEADAGDESEPS 833 Score = 68.3 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 16/257 (6%) Query: 533 IVREDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 ED V+ G +KR PLS +R R+ G G+ D + L ++ Sbjct: 614 KADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIGLNEGDSLVWSHL--TGGGDEII 671 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + ++ L +G+ V+ Sbjct: 672 VATHDGAAIHFTESGARAMGRTG---HGVRVIRLREGDY------VIGAGVCRPGATVLT 722 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 T+ G RR+++ D+ +I + G + ++ ++ + ++ + +D++L + G +R Sbjct: 723 ITEDGKGRRSRVDDY-RITKRGGLGIRNYAKGGVAGIKIVDETDDLILISANGILIRLHA 781 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S I V R GVR + L +GD+V +M + D + + Sbjct: 782 SDINV-QSRYGSGVRVMRLGEGDKV-AMVARVDRDNEAETAKVEADAGDESEPSAEELAA 839 Query: 771 EITSLKNDSSVEGNISE 787 + + D + + E Sbjct: 840 IEAAERADEAADVPDDE 856 >gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis] gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus] Length = 742 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 357/823 (43%), Positives = 512/823 (62%), Gaps = 84/823 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +L V++ G+GKRT ++R+ +R GKG++ Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 9/206 (4%) Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICY 754 T G R P S + R GV+G+ D V + D ++ Y Sbjct: 510 TLTHNGYIKRLPASTYKT-QNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVY 568 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 I+ ++F+ +++G KRT Sbjct: 569 RTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPL 628 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 F +N G+ A + + +++V + + II+ + G LIR ++R Sbjct: 629 SSF--ANIRTNGLIAISLRE---EDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG 683 Query: 875 RATKGVVIFSTAKDERVVSVERIRES 900 R GV + ++++VV +E + E Sbjct: 684 RNAAGVKAITLGEEDQVVGMEIVEED 709 Score = 95.6 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 11/250 (4%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 +++ + T +G ++R S + NR G M + D + + T + Sbjct: 495 SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTST 554 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYD 749 + IL T G+ R I R + G+ I+L KG+ + + I+ + D Sbjct: 555 HDHILFFTNKGKVYRTKGYEI-PEYSRTAKGIPIINLLGVDKGEWINA--IIPIREFGDD 611 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E + + +R I + + E L ++ I+ + G Sbjct: 612 EFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGML 671 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 R + D R R+ G++A + + +V + V ++ +++V+ G R P++E Sbjct: 672 IRFNEQDVRSMGRNAAGVKAITLGE---EDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDE 728 Query: 870 IRIASRATKG 879 R+ SR KG Sbjct: 729 YRLQSRGGKG 738 Score = 91.0 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 100/239 (41%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ +I K G RF +S + + + + L Sbjct: 386 IALDHLDEVITLIRSSKTAEI---AKQGLMERFGLSE------KQAQAILDMRLQRLTGL 436 Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +++ ++ A+ + + + R + +E + K + + E Sbjct: 437 EREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESI 496 Query: 790 CQELKLKEQFI-LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E + EQ I +T++ G+ KR + ++ NR G+G++ + + + L + Sbjct: 497 EDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHL---LTTS 553 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 +D I+ ++KG + R EI SR KG+ I + K E + ++ IRE + Sbjct: 554 THDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE 612 >gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] Length = 827 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 344/914 (37%), Positives = 509/914 (55%), Gaps = 91/914 (9%) Query: 1 MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M+ + +D + +T+ I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSSDVPDADPSDVGAAQVTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + GV N + K + + GE MG YHPHG++AIYD LARMAQD+S+R L++GQGNFG Sbjct: 61 AMHEAGVTSNSAHRKSSSVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVDGDPPAA RYTE R+ A LL D+ +DTVDF NYD +EP VL A +PN+LVNG Sbjct: 121 SVDGDPPAAMRYTEARMSPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGM+TNIP HNLGEV+D VA+I PD ++ LME ++GPDFPTGA I+GR + Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIVGRNAVH 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRG + +R +++ G +IV++E+P+Q NK+ ++E+IAE V + I I D Sbjct: 241 KAYKTGRGRVRVRAEFEVDEEEG---RIVISELPFQQNKSRLVERIAEDVNDGSIEGIRD 297 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G RVV+ELKR A A+V+ NQL + L+ F V +AL P+ L L Sbjct: 298 LRDESDRDGIRVVVELKRDAMAEVVKNQLLE-SHLERTFGVINLALVDGSPQVLDLKQTL 356 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + +V R +VV RR+++ L + DRAH+L G A+ +D+VV I+ S + + A+ L Sbjct: 357 EYYVEHRRDVVRRRSEHELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAAL- 415 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + SE Q I+ ++L LT + +I +E Sbjct: 416 -------------------------EADYEFSEAQAEHIVRMQLGSLTSMETQEIESEYE 450 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + I+ IL L +I EL +KDE D RRT +E + D+ ED I E+ Sbjct: 451 DVTARIERLETILGDPDELDQVIITELREIKDEYDDERRTSFIEDVGDVTHEDLIPEEEC 510 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VV +S Y+KR+ L +RAQ RGGKG G +++ D V+ +F ++H +L F++ G + Sbjct: 511 VVVMSEDDYIKRMSLDTFRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQI 570 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + +P S ARGK+ +N++ L+ GE I ++ + + ++ ++ T+ G ++ Sbjct: 571 YELKTYEIPEMSRTARGKSAVNLIDLDDGEEIEAVVNTDDLD---DDEFLTMVTRDGYIK 627 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R + F I +G A++L+ DE++ VE DI++ ++ G +RF S R G Sbjct: 628 RTAVDQFGNIRSTGIRAIRLEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAM-G 686 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L +GD V +A + + Sbjct: 687 RTARGVIGIDLREGDAVAGVAAIDEDRHN------------------------------- 715 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++LTV+E G+GKR+ ++R+ +R+GKG+ N Sbjct: 716 --------------------WVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRN-- 753 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G VA+ V D ++ +SD G ++R V EI R TKGV++ + D+ V SV+ + Sbjct: 754 GEAVAIEAVTYGDHLLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVS 813 Query: 899 ES--EIVDEAESTE 910 ES + E E Sbjct: 814 ESVHGGETDVEGDE 827 >gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400] gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400] Length = 909 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 385/927 (41%), Positives = 550/927 (59%), Gaps = 65/927 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I++P + ++ LME I GPDFPT A I GR GI +AY TGRG ++R Sbjct: 186 NLTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYNTGRGRAIMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE+I+V EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 306 IKRGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAHVL LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 366 VFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGMLEK 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AILELRL RLTGL D I E L + I Sbjct: 426 AGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELLVLIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL + SRL+ +IK+EL + ++ RRT I +DM ED I ED+VVT+SHL Sbjct: 486 GLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVVVTLSHL 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++ Sbjct: 546 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARG+ ++N+L L+ GE IT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 606 LPLASRTARGRPIVNLLPLSDGEHITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711 +G IA+ L D+++ V+ +DI+L + G+ VRF Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722 Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 A+R GR + GVRGI L G +V+S+ + A + Sbjct: 723 TGEEIIALRPM-GRTATGVRGIKLDAGQKVVSLIVPKGDGAILTVTENGYGKRTELSEYP 781 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + + S Q E I+ +S KG RT + I R+ + Sbjct: 782 AKSRGTKGVVSIKVSERNGEVVGAVQVGTFDE--IMLISNKGTLVRTPAEGVSIIGRNTQ 839 Query: 826 GIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ ++ + +V + + + ++++ ++G +I PV+++ Sbjct: 840 GVTIIRTAEDEK---VVGLQRIEEIQTEELL--DEEGNVI--PVSDV------------I 880 Query: 884 STAKDERVVSVERIRESEIVDEAESTE 910 + ++E D+ E+T+ Sbjct: 881 D----------AEVTDAESTDDVEATD 897 Score = 65.2 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 17/274 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L+ Y R G V ++D D + + I ++ F Sbjct: 639 YADDKYIIMATAHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITEGSDDIMLF 696 Query: 593 SSLGFVYKEK-----------VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 S+ G V + G + + + +G ++ Sbjct: 697 SNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLDAGQKVVSLIV 756 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILL 698 + ++ T++G +R +LS++ +R K + + E++ ++I+L Sbjct: 757 PKGDGAILTVTENGYGKRTELSEYPAKSRGTKGVVSIKVSERNGEVVGAVQVGTFDEIML 816 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR P + GRN+ GV I A+ ++V+ + + + Sbjct: 817 ISNKGTLVRTPAEGV-SIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTEELLDEEGNVIP 875 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + E T + + + + QE Sbjct: 876 VSDVIDAEVTDAESTDDVEATDPDEAKTGDDEQE 909 >gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010] gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010] Length = 859 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 372/847 (43%), Positives = 518/847 (61%), Gaps = 18/847 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + S+ I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G WN Y K Sbjct: 7 ELDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE R Sbjct: 67 ARIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K H +L DL K+TVDF NYD S EP VL + P +LVNG GIAVGMATNIP HN Sbjct: 127 MAKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++ +A+IDNP+I + LME I GPDFPT A+I G GI AYATGRG + IR + Sbjct: 187 LTEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGARGIAEAYATGRGRVHIRARA 246 Query: 255 HIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE ++ IVV E+PYQVNKA +LEKIAELV+EK+I I LRDESD+ G R+VI Sbjct: 247 DIETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIV 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +V+LN LY+ T +Q++F +NMVA+ +P L +L AF+ R EVV RR+ Sbjct: 307 LRRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKDVLAAFIRHRREVVTRRS 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA A+AN+DEV+ +I+ SPNP A+ L+ R W + I +++ Sbjct: 367 IFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGE 426 Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D +LS Q +AIL++RL RLTGL +D I E + I Sbjct: 427 AGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILS L+ +I+ EL+++ E RRT I+ LD+ ED I E+MVVT+SH Sbjct: 487 ELLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLSHA 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K L Y+AQ+RGGKG++ M+DEDF+ LFI +TH ++L FSS G VY +KV+ Sbjct: 547 GYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKVYE 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP G ARGK ++N+L L +GERI ++ E E + ++ AT G V++ L D+ Sbjct: 607 LPQGGRTARGKPIVNLLPLEEGERINAVLSIREFE---ADKFIFMATASGTVKKTPLVDY 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D+++ V +DI+L + G+ +RFP + +R GR S GVR Sbjct: 664 SRPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSM-GRVSRGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ +A +++IS+ I A + + +S Sbjct: 723 GMRIADNEKIISLIIAQEEGAILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRNGS 782 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q E I+ ++ G RT D + R+ +G+R ++SK + LV V Sbjct: 783 VVGAVQV--CDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEK---LVGVE 837 Query: 846 PVNDNDQ 852 V ++++ Sbjct: 838 RVLEDEE 844 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 73/403 (18%), Positives = 155/403 (38%), Gaps = 36/403 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + R+ ++ L +++ D ++ +IR A +R+ + L + +D Sbjct: 475 LQEYREVLDLIGELLAILSDPDNLMAVIRDELVAINAEYGDERRT------EILANHLDL 528 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495 + + ++ M ++ +L R + + + E L I ++ Sbjct: 529 TLEDLITEEEMVVTLSHAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHD 588 Query: 496 RLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV----------- 542 LL + K RT + ++++ + R + V+++ Sbjct: 589 TLLCFSSTGKVYWKKVYELPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEADKFIFM 648 Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+ PL Y R G V ++D+D + D+ + + ++ FSS G V + Sbjct: 649 ATASGTVKKTPLVDYSRPRANG--IIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRF 706 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + +RG + RI + ++ AT+ G +R Sbjct: 707 PEADVRSMGRVSRGVRGM---------RIADNEKIISLIIAQEEGAILTATEFGYGKRTN 757 Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 L+++ R G+ + + + D + E+ I+L T G VR P+ + G Sbjct: 758 LAEYRVQGRGGQGIISIQTSDRNGSVVGAVQVCDEDQIMLITNGGTLVRTPVKDV-SLVG 816 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 RN+ GVR I+L+K ++++ + VL + D + + S + Sbjct: 817 RNTQGVRLINLSKNEKLVGVERVLEDEEDAELPVVDDNTDSEE 859 >gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] Length = 889 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 348/896 (38%), Positives = 512/896 (57%), Gaps = 97/896 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I + EM++SYL+YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y K Sbjct: 38 ERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYSK 97 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTEC Sbjct: 98 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 157 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP H Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217 Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 N+ EV +G +D+P+ + L+ II+GPDFPTGA ILG GI+ AY TGRG I Sbjct: 218 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 +R V + E+ R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + +V Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 396 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + + EVQ AIL ++L RL L R I +E N L +I + Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R I+ EL + + RRTRI+ +M ED I E++VVTV+H G++ Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFI 550 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G+ + N+L E I T++ P E Y+V AT+ G V++ L+++ Sbjct: 611 GSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667 Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F +R GR Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPM-GRQ 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD++++M +V Sbjct: 727 TAGVQGMKFREGDELLAMDVV--------------------------------------- 747 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 748 ------------WGDSDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 793 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 LV V ++DQ++ + G +IR V E++ R T+GV + K++ ++S+ R Sbjct: 794 LVGAVIVEEDDQVMAIMKSGKVIRSNVAEVKRTGRNTQGVTLAKPDKNDEIISIAR 849 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ ADY++ + + + + + + E ++L +E + Sbjct: 482 LMRKIADYNDILAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVV 541 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +TV+ GF KRT + ++R +R GKGI+ + + + + F + ++ ++ ++KG Sbjct: 542 VTVTHSGFIKRTKADEYRAQHRGGKGIKGAKLREDDVVDH---FFLTSTHNWLLFFTNKG 598 Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEI 902 + R+ E+ SR +KG + + DE + +V I E+ Sbjct: 599 RVYRLKAYELPEGSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEV 643 >gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424] gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424] Length = 815 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 371/898 (41%), Positives = 551/898 (61%), Gaps = 85/898 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ ++G+ +K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG+ A Y + R+AQD++ R +++GQGNFGS+DGD AA R Sbjct: 62 PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG VA+ DN +I + LM I+GPDFPTGA +LGR+GI AY TGRGSI+ Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLLGRSGIVKAYTTGRGSII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+IV+TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEALYHYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S E A+ LM++ Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L++VQ +AIL++RL RLTGL RD I E L I + D Sbjct: 413 -----------------FSLTDVQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K+ELL +KD+ RR+ I+E + +++ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIEIVKEELLEIKDKYGDKRRSVIIEGQIDQIDNEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED + + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + + ++F+TK G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEDTSLIFSTKFGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V + Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILTV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 N+ +++++D+G +IR+ ++ I R GV + + D++V +V + E ++ Sbjct: 758 GNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATVTLAEKEENYEDD 815 >gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] Length = 788 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 330/884 (37%), Positives = 508/884 (57%), Gaps = 98/884 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I +I +EM++SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ NK Y K Sbjct: 2 KIQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKS 61 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEVMGKYHPHG+ AIY+ LARMAQD+S+R LL++GQGNFGS+DGD PAA RYTE R Sbjct: 62 ARIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEAR 121 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A +L D+ +TVDF PN+DG+ +EPVVL AR PN+L+NG GIAVGMATN+P HN Sbjct: 122 LAKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHN 181 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+VD + +ID+PD D+D L+E ++GPDFPTG I+G G+ +AY TG+G I +R Sbjct: 182 LSEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTIIGYEGLVDAYRTGKGKIKVRAKY 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +++ ++I++ EIPY+VNK+ +L+KIA LVRE ++ I+DL+DESDR+G R+VI++ Sbjct: 242 EVKE-----DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKV 296 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + ++++NQL +T L+ + + + L P L ++K ++ R EV+VR+ Sbjct: 297 KRDMNPEIVVNQLLEHTDLEVTYGIINLVLVDGVPRILNLKELMKEYIRHRMEVLVRKLN 356 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++R H++ GL A+ +DEV+ I+ S + + A L+ Sbjct: 357 YQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLV---------------- 400 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 ++ SEVQ +AIL++RL +LT + D + E L +IK +L+S Sbjct: 401 -----------SLGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASE 449 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + G+IK+EL +K+ RRT I + + + ED I E+ V+ ++ GY++R+ + Sbjct: 450 EKRYGVIKEELFEIKNLYGDKRRTDIYKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKV 509 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGGKG + + D D+ + H ++FF+ G VY K + +P G+ ++ Sbjct: 510 DEYRAQGRGGKGV-MINYGEGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRS 568 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+A+INI+ G + ++ + + Y+ F T++G V+R L +F +G Sbjct: 569 RGRAIINIIP-KLGSDVIRMLSLNDF-----SGYLFFITRNGIVKRTSLEEFSNPRSTGI 622 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ D DE++ V+ DI L TK G+ +RF +RV GR + GV GI L GD Sbjct: 623 RAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQDGD 681 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VIS A+ Sbjct: 682 EVISSAV----------------------------------------------------- 688 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + + ++ V G+GKRT ++R R G G+R + N +V +ND+ Sbjct: 689 ESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNAN----VVKSLLTTENDEA 744 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L++ G IR+ + ++ + R +GV + + VV+V ++ Sbjct: 745 LLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788 >gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836] gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836] Length = 907 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 347/917 (37%), Positives = 506/917 (55%), Gaps = 91/917 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE IS I + + EMQ SYL YA+ VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MTETPISPG---HDRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + KC+RI G+VMG+YHPHG++AIYD L R+AQ W +R +I+ QGNFGS Sbjct: 58 YDGGYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECRL A ++ D+ ++TVDFRPNYDG QEPV+L +R+PN+LVNG Sbjct: 118 GNDPAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSA 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV ++NPD + ME I+GPDFP GA+I+G G Sbjct: 178 GIAVGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIVGYKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +R V IE+ + R +VV+E+PY VN + +KIAELV ++ I Sbjct: 238 IDDAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGI 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RD+ S R G R+VI LKR A V+LN LY++T LQ F NM+AL P +L Sbjct: 298 ADIRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDGVPRTLSLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 + ++ + EV+ RRT+Y L +A AHV G A+ LDEV+ +IR SP+ + AR+ Sbjct: 358 LFITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQ 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ + + E+Q +AIL+++L RL L R I + Sbjct: 418 GLIS--------------------------LLDIDEIQAQAILDMQLRRLAALERQKIID 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 LN L I + DIL+ R I++ EL + D+ RRT I+ D+ +D + Sbjct: 452 RLNELEAVIADLEDILADPVRQRHIVRDELAEIVDKFGDDRRTTIIAADGDLSVQDLVPD 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR Q RGGKG G MR ED + F + H +LFF++ Sbjct: 512 EDVVVTITRGGYAKRTKTDLYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTK 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ KVW+LP + A+G + +LS E I ++ + + Y+V ATK G Sbjct: 572 GRVYRAKVWQLPESARDAKGSHVAGLLSFQPDEEIAQVLTLRDYD---QADYLVLATKKG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 V++ L D+ +SG IA+ DE++ + + E+D+LL +K GQ +RF + Sbjct: 629 LVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVSKKGQSIRFTANDEQ 688 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV G+ GD+++SM+++ Sbjct: 689 LRPM-GRATSGVTGMKFRAGDELLSMSVIRAGS--------------------------- 720 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + QF+ TV++ G+ KR+ ++R R G GI+A + Sbjct: 721 ---------------------EEDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKL 759 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + +E G+LV V D+DQ++ + G ++R V+ + + R T GV + VV Sbjct: 760 N--DERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSVPVKGRDTMGVRFAGVGASDAVV 817 Query: 893 SVERIRESEIVDEAEST 909 ++ R + + DE ++ Sbjct: 818 AIARNTDLTVADELDAA 834 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 93/267 (34%), Gaps = 7/267 (2%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D +V + G VK+ PL Y + R+ G D++ + S +L S G Sbjct: 619 DYLVLATKKGLVKKTPLRDYDSARQSGIIAVNFREADDELIGADL-ASAEDDLLLVSKKG 677 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + G+ + M S + +V T G Sbjct: 678 QSIRFTANDEQL-RPMGRATSGVTGMKFRAGDELL-SMSVIRAGSEEDTQFVFTVTDAGY 735 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R+++S++ Q R G + DE + + +L GQ VR + ++ Sbjct: 736 AKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSV 795 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR+++GVR + D V+++A + ++ + + Sbjct: 796 -PVKGRDTMGVRFAGVGASDAVVAIARNTDLTVADELDAAAGTDALVVDGVVQDEAGSLD 854 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFI 800 + DS + + + + Sbjct: 855 GVVVDSGEVDGAQDVDGSTTEPAPESV 881 >gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] Length = 818 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 359/902 (39%), Positives = 531/902 (58%), Gaps = 95/902 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNVFDKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF+PN+D + +EPVVL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN + ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + I+VTE+PY VNKA ++EKIA+LV+EK+I I L DES Sbjct: 242 GRGKIRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGIL 358 R+G R+ IEL+R +A+VILNQLY++T LQ F V M+A+ +P+ L+ +L Sbjct: 302 SREGMRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEML 361 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 ++ +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+ LM Sbjct: 362 DYYLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLM 421 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R L++ Q +AI+++RL LTGL R+ + E Sbjct: 422 AR--------------------------FELTDAQAQAIVDMRLRTLTGLERERLEAEYA 455 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I E IL+ LLG+IK+E+ + D+ R+T I D ED I E++ Sbjct: 456 ELMKRIGELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDEFDFTVEDLIPEENV 515 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+T++ LGY+KR+ +++Q RGGKG G+ DED + +LF+ STH ++FF++LG V Sbjct: 516 VITMTRLGYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKV 575 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + +P ARG A+IN+L L E+IT ++P E + Y+ ATK G V+ Sbjct: 576 YRLKAYEIPEAGRTARGTAIINLLQLAPEEKITAVIPIREYN---EDHYLFMATKKGLVK 632 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + ++D+ + ++G A+ L DE++ V+ DILL T GQC+RF + +R G Sbjct: 633 KTPITDYANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRS-TG 691 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S+GV GI+L GD+V+ M + + M Sbjct: 692 RVSMGVIGINLMDGDEVVGMQLDCQGEYMLIVSEKGMGK--------------------- 730 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 LT E +F++ NR GKG++ + + + Sbjct: 731 ----------------------LTAME----------EFKVQNRGGKGVKCYKILE--KT 756 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G ++A VN + I++++ +G +I++P ++I + +R T GV + + KD +V S+ ++R Sbjct: 757 GNVIAAKAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASITKVR 816 Query: 899 ES 900 ES Sbjct: 817 ES 818 >gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] Length = 894 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c] gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c] Length = 830 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 358/903 (39%), Positives = 505/903 (55%), Gaps = 95/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MVDVLPPP----GDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+RI G+VMG YHPHG+ +IYD + R+AQ WSLR L++G GNFGS Sbjct: 57 YDGGYRPDRGYFKCSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSP 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE R+ A +L D+ DTVDF PNYDG QEP+VL +R+PN+LVNG G Sbjct: 117 GNDPPAAMRYTEARMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G ++NPD + L+E II+GPDFPT +I+GR G Sbjct: 177 GIAVGMATNIPPHNLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIVGRQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V ++E+ R Q+VVTE+PYQVN + EKIAELVR+ RI I Sbjct: 237 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ F NM+A+ P L Sbjct: 296 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA++R HVL GL IA+ +LD+V+ +IR + + + AR Sbjct: 356 QMIRYYVEHQVDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARG 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM R LSE+Q AIL+++L RL L R I + Sbjct: 416 QLMTR--------------------------YSLSEIQATAILDMQLRRLAALERQRIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++ E IL+S R II +EL V D+ RRTRIV +M ED I + Sbjct: 450 EAAELRAKVTELEAILASPQRQREIIGEELKEVVDKFGDERRTRIVPFEGEMSIEDLIAQ 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVTV+ GY KR +YR+Q+RGGKG G +R++D V F+ +TH +LFF++ Sbjct: 510 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNK 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K LP + A+G+ + NIL+ Q ERI +M + Y+V ATK G Sbjct: 570 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVMAIRDYA---AAPYLVLATKRG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 +++ L+DF G +A+ L DE++ ++D+LL ++ Q +RF + Sbjct: 627 LCKKSALTDFDSNRAGGLVAINLREDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ D+++S+ ++ Sbjct: 687 RPM-GRATAGVIGMRFDADDELLSIEVIKPDSTAS------------------------- 720 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +L + GF KRT ++ + R GKG+ + Sbjct: 721 --------------------------LLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIV 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 G LV V +DQ+ ++ G ++R ++R A R T GV + +VV Sbjct: 755 P--SRGNLVGALVVEPDDQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVG 812 Query: 894 VER 896 V R Sbjct: 813 VAR 815 >gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] Length = 808 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 353/890 (39%), Positives = 519/890 (58%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ + V + EM+NSYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+ N+ Y Sbjct: 3 EKSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R LI+G GNFGS+DGD PAA RYT Sbjct: 63 RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A L+ D+ KD VDF PNYD S +EPVVL + P +L+NG GIAVGMATNIP Sbjct: 123 EVRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +I+ P +++ L+ I+GPDFPTG +I+G GI+ +Y TG+G + +R Sbjct: 183 PHNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIGTKGIRESYLTGKGKLTVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+T + I++ EIPY VNK+ +L +IAELV+EK+I I DLRDESDR G RVV Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A +++NQLY++T LQ+ F V M+A+ +P+ F L +L F+ R++VV+R Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQPKIFNLKELLTIFLEHRKDVVIR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA+ RAH+L GL IA+ +LDEV+ IIR + N E A+ +LM R Sbjct: 363 RTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q +AIL++RL +LT L ++ + E+ + I IL Sbjct: 412 ---------------FKLTQNQAQAILDMRLHQLTRLEKERLMEEMKQIKENISILERIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550 L +I +EL +K + R+T I E D+ ED + V+ ++ GY+KR Sbjct: 457 KDEKELWRVISEELKEIKKKYADERKTSIEEEEKSDITIEDILPDNPEVICITQDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS Y+ QRRGGKG + + ++D +T + ST +++ FS+ G VY K + L S Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G A+ L++ ERIT I+ E NLY F T G V++ + +F + + Sbjct: 577 RQSKGIAIKEYLNIENEERITEIISLSELP---KNLYFFFITSKGIVKKTPVEEFENVRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+K+ D +++V + N+I++ T+ G +RF R GR + GV GI L Sbjct: 634 SGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPM-GRVAQGVIGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI I+ Sbjct: 693 KDDSVIGGVIL------------------------------------------------- 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + I+ V++ G GKR + +F R G GIRA ++ ++ G L+ V V++N Sbjct: 704 ----QESKQIVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKIT--SKTGDLIGVKNVSEN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D+I++ + KG +IR+PVN I I SR ++GV + +D+ VVS++ + Sbjct: 758 DEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDDSVVSMDLVENE 807 >gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] Length = 885 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 381/848 (44%), Positives = 544/848 (64%), Gaps = 17/848 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 KGIT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 12 KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 72 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N DI +D L+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 251 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 252 ANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 311 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN L+ T LQ+ F VNMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 312 CKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 371 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +I+ +P+P A++ L+ R W+ ++ D+++ Sbjct: 372 IFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADMLER 431 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 432 AGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 491 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ II+ EL++V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 492 ELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAAIHDIDIEDLITQEDVVVTLSRE 551 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK L Y AQRRGGKG+S M+D D++ L + +TH ++L FS+ G Y KV++ Sbjct: 552 GYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTRGKAYSLKVFQ 611 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARGK ++NIL L +GERIT I+P E + ++ AT G V++ L F Sbjct: 612 LPQASRTARGKPIVNILPLEEGERITAILPVSEYS---EDKFIFMATGDGTVKKTSLDQF 668 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +G IA+ L D ++ V+ T N+I+L +K G+ VRF +R GR + GVR Sbjct: 669 AKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGM-GRTASGVR 727 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L DQV+S+ IV + D + + + + + N Sbjct: 728 GMKLTGEDQVVSL-IVPSNEGDILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRNG 786 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S + + ++F + +++ G RT + R+ +G+ ++ +V + Sbjct: 787 SVVGAVQAEDGDEF-MMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDE---NVVGLQ 842 Query: 846 PVNDNDQI 853 +++ +++ Sbjct: 843 RIDEPEEL 850 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 61/425 (14%), Positives = 144/425 (33%), Gaps = 38/425 (8%) Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L++ + + L +A+ + ++ IIR E ++I I ID Sbjct: 480 LDEYKALLDEIAELMHILASTERLMEIIRD----ELITVRDTYGDERRTEIGAAIHDIDI 535 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494 D + LS ++ ++ R ++ + E L + ++ Sbjct: 536 EDLITQEDVVVTLS---REGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTH 592 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542 +L + P+ +R G + E + + Sbjct: 593 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 652 Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + G VK+ L + R G V +R++D + + I + ++ FS G V + Sbjct: 653 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVR 710 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + A + + + L +++ +++ N ++ T++G +R Sbjct: 711 FSEEHVRGMGRTA---SGVRGMKLTGEDQVVSLI------VPSNEGDILTVTENGYGKRT 761 Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 K+S++ +R+ + + + D + ++ ++ T G VR +S + Sbjct: 762 KISEYPTKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 820 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN+ GV I A+ + V+ + + + ++ + Sbjct: 821 GRNTQGVTLIRTAEDENVVGLQRIDEPEELEILEGDVVEGEEEATVITEATETPDAESDE 880 Query: 778 DSSVE 782 D++ E Sbjct: 881 DTTEE 885 >gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 820 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 324/894 (36%), Positives = 519/894 (58%), Gaps = 84/894 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Q+G+ N Sbjct: 2 SEGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSS 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++Y+ + R+AQ W+LR LI+GQGNFGS+D DPPAA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+++ + +L D+ K+TVD + N+D S +EP VL R PN+L+NG GIAVGMATNI Sbjct: 122 TEVRMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 P HNL E ++ A IDN + ++ +M+ ++ PDFPTG +I G G+KNA+ TG+G IV Sbjct: 182 PPHNLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIYGYDGVKNAFHTGKGRIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R H E+ R+ I+V EIPYQVNK+ M+ + L++E ++ I +RDESDR G R Sbjct: 242 LRAKVHFEEIQ-GRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V LK+ + +++LN+L++YT LQ+ F+VN +AL KP + + +++ FV R +V+ Sbjct: 301 IVYILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQLNIKDMIQHFVDHRHDVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RR+KY L K ++R H+L+G + +LD ++++I+ S N A L+++ Sbjct: 361 IRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKK--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +SE Q+++IL++RL LT L D ++ E + L +I+ + Sbjct: 412 -----------------FKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQN 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L S IIK+ELL +K + RRT+I + ED I E +V+T+SH GY+K Sbjct: 455 VLVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R LS Y+ Q RGG G G R+ DF L I + H +LFF+ G + +V+ +P G Sbjct: 515 RTSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEG 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+A+ NI+ L Q +++ + + ++ + YV+ T+ G +++ L ++ + Sbjct: 575 SKISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G A+ + D +L ++ + + K G+ +RF + +R GR S GV GI Sbjct: 635 PRKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRS-TGRTSSGVIGI 693 Query: 728 SL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 K D VI M V Sbjct: 694 HFTNKNDMVIGMICVDG------------------------------------------- 710 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 K + +L VSEKGFGKR++ D+RI+NR GKGI+ ++++ + G L+A+ Sbjct: 711 -------KKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQ--KTGYLIAIKH 761 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V D D ++++ G +IR+ V+ IR+ R T+GV + + +++ + V ++ + Sbjct: 762 VTDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVAKVYKP 815 >gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] Length = 894 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10] gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10] gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] Length = 894 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] Length = 857 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 371/898 (41%), Positives = 540/898 (60%), Gaps = 81/898 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K Y Sbjct: 21 EQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKPYR 80 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCA G V+G+YHPHG+A++YDA+ R+AQD+S+R L++G GNFGSVDGDPPAA RYTE Sbjct: 81 KCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRYTE 140 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYD QEP VL +R+PN+L NG GIAVGMATNIP Sbjct: 141 SRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNIPP 200 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D +IDNPD LD +M+ I+GPDFPTG VI+GR GI+ AYATGR + +R Sbjct: 201 HNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIMGRAGIRAAYATGRARLTLRA 260 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ + RE+IVVTEIPY VNKA ++E IA+LV++KRI I+DLRDESDR G R+VI Sbjct: 261 RTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMRIVI 320 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A V+LN+LY Y+ LQ V M+AL G P+ L +L ++ F+ E+V RR Sbjct: 321 ELKRDANAQVVLNRLYSYSQLQDTVGVIMLALVGGVPKVMPLKDVLTHYIDFQGEIVTRR 380 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L +A++R H+L GL + N DEV+ IIR S + ++ L+ R Sbjct: 381 TKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIAR------------ 428 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 ++++Q AI+ ++L +L+GL R I EL + +KE IL Sbjct: 429 --------------FGITDIQATAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILG 474 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +R++ I+K+EL ++ + RRT IV +++ ED I ED V+T++H GY+KR P Sbjct: 475 DYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVDIEDLIPVEDCVITLTHFGYLKRQP 534 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + YR QRRGG+G SG+ R+EDFV +LFI STH ++FF+S G ++ K + + GS Sbjct: 535 VDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRT 594 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG ++N+LS++ E++T ++ DE + +V T+ G ++R L + + R G Sbjct: 595 SRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMG 654 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD DE+ V +++++ TK G +RF R + R + GV+ I+L G Sbjct: 655 LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIRFDEQDARPLS-RTARGVKAITLEDG 713 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ MA V Sbjct: 714 DEVVGMARVR-------------------------------------------------- 723 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K +LTVSE G G+RT +R+ +R GKGIR V ++ G + V V+++D Sbjct: 724 -KESGATLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYV---DKNGPVAGVRMVDEDDD 779 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +I+++D G +IR+PV EI + SR GV +++ RVV++ R + E + E Sbjct: 780 VIIITDDGVIIRIPVREITVQSRYGGGVRAMRVSEESRVVTLARAPKEETSGDDGQEE 837 Score = 58.3 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 62/417 (14%), Positives = 144/417 (34%), Gaps = 27/417 (6%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R + L K +R + + +V+ + A + + ++ I Sbjct: 454 RIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVD--I 511 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + + + + + Q + G+ R E + I D + Sbjct: 512 EDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFI 571 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE----------DCIVREDMVVT 541 + + + + + T R T IV L DE D RED + Sbjct: 572 MFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLV 631 Query: 542 V-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + + G +KR PL Y+ RR G + + D D + + + ++ + G + Sbjct: 632 MVTRKGIIKRTPLGAYKNVRRMG--LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIR 689 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + P +R + ++L G+ + + ++ + ++ ++ G RR Sbjct: 690 ---FDEQDARPLSRTARGVKAITLEDGDEVVGMARVRKE----SGATLLTVSESGLGRRT 742 Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++S + ++ G ++ D+ V +++D+++ T G +R P+ I Sbjct: 743 EVSQY-RLQSRGGKGIRNYYVDKNGPVAGVRMVDEDDDVIIITDDGVIIRIPVREI-TVQ 800 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 R GVR + +++ +V+++A + D+ + + D Sbjct: 801 SRYGGGVRAMRVSEESRVVTLARAPKEETSGDDGQEESQIAAGDEAAGETDKTAEDR 857 >gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146] gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146] Length = 878 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 382/850 (44%), Positives = 540/850 (63%), Gaps = 22/850 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 367 IFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALAEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H + + + + + E N Sbjct: 723 GIKLAGDDRVVSL-IVPHGEGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERNG 781 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843 S +++ +Q I+ +++ G RT + I R+ +G+ ++ +V Sbjct: 782 SVVGAVQVEDSDQ-IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDE---HVVGLQ 837 Query: 844 --VFPVNDND 851 V PV+D D Sbjct: 838 RVVEPVDDED 847 Score = 71.0 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 66/412 (16%), Positives = 144/412 (34%), Gaps = 38/412 (9%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428 + LL++ + + L + + + ++ +IR ARR + + +I+ Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIE 531 Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483 DLI+ D Y LS+ + + + D I L + + Sbjct: 532 DLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591 Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + + G + ++++ R T I+ E + Sbjct: 592 CFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN------ 645 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL + V+ FS+ G Sbjct: 646 -VFMATASGTVKKTALAEFSRPRAAGIIAVNLNDGDELIGVDL--TDGNDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +R+ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDRVVSLI------VPHGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ ++++ +R+ + + + ++ + I++ T G VR +S + Sbjct: 754 KRSSVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDSDQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GRN+ GV I A+ + V+ + V+ D D ++ Sbjct: 813 SIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864 >gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] Length = 895 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 67/444 (15%), Positives = 141/444 (31%), Gaps = 52/444 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773 + D E Sbjct: 872 PEGEEALVENDAPVAQDDDDGEQE 895 >gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941] gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941] Length = 823 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 359/895 (40%), Positives = 521/895 (58%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + +IT+EM+++YL YA++VI+ RA+PD RDGLKPV RIL+GM MG+ N+ + KCA Sbjct: 6 VRTRNITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GE++GK HPHG++A+YDAL R+AQ W++R L+EGQGNFGSVDGDPPAA RYTE RL Sbjct: 66 RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D +IDNPD ++ L++I+ GPDFPT +ILG GI NAY+TGRG I+IR +H Sbjct: 186 SEVCDAITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + IVVTE+PYQVNKA + E+IAEL R+++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F VNM+AL +P TL +L+ ++ R EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L+KAR RAH+L GL IA+ +LD V+ IR S + + AR LM Sbjct: 366 EFDLDKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLM--------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q AILE++L RL L R I E + I E DIL++ Sbjct: 411 -----------NGFALSEAQANAILEMQLGRLAALERQRIEEEYREVIRLIGELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +IKQ+L +K + RRTRI+ ++ D+D I +++T++ GYVKR Sbjct: 460 PRKILHLIKQDLADLKAKYGDARRTRIIPEANGEVSDDDLIPDVKVLITLTDRGYVKRQS 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VYR QRRGG+G G R++D V + +T +LFF+ G VY+ K LP S Sbjct: 520 PDVYRTQRRGGRGIRGATTREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N+++L GE++T+++ P+ E Y++ AT G ++R + ++ Q+ +G Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFE---KAEYLIMATVRGKIKRTSIREYSQVRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ DE+ V D+LLTT GQ +RF +R GR + GV GI+LA+G Sbjct: 637 LIAIGLEEGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEG 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + A Sbjct: 696 DRVVSMDLAQENAA---------------------------------------------- 709 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L V+ G+GKRT ++ + R+ G+ + + V +N Sbjct: 710 -------LLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPG---DEVAVAHVVRENSL 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++ G ++R + I + R T+GV I + ++RV ++ E + +E Sbjct: 760 LTIITESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAALCVEAPDENEERSE 814 >gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216] gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216] Length = 910 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 355/916 (38%), Positives = 510/916 (55%), Gaps = 104/916 (11%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSESTTEPPHP-GDRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KCAR+ G+VMG YHPHG+ +IYDAL R+AQDWSLR L++GQGNFGS Sbjct: 60 YDGGYRPDRGYSKCARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECR+ A ++ D+ ++TVDF PNYDG EP VL +R+PN+LVNG Sbjct: 120 GNDPAAAPRYTECRMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G ++DNPD + L+ I+GPDFPTGA+ILG G Sbjct: 180 GIAVGMATNIPPHNLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHRG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +R V +E+ R +VV+E+PYQVN + E IA LVR+ R+ I Sbjct: 240 ISDAYRTGRGSITMRAVVEVEEIQ-GRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD++D S + G R+VI L+R A A V+LN LY++T LQ+ F NM+AL P + Sbjct: 299 ADVQDHTSGKTGQRLVIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIH 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 LK ++A + +V+VRRT++ L KA +RAH+L L A+ LDEV+ +IR SP E+AR Sbjct: 359 AFLKHWIAHQLDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARD 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM G + + E+Q+RAILE++L RL L R I + Sbjct: 419 GLM--------------------------GLLEIDEIQSRAILEMQLRRLAALERQRITD 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + L I + DIL+ R I+ EL + + R+T+I+ DM ED I Sbjct: 453 EYDELMRMIGDFNDILARPERQRQIVGDELAELVERYGDERKTQILPFEGDMTVEDLIPV 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVTV+ GY KR +YRAQRRGG+G G +R++D V F +TH +LFF++L Sbjct: 513 EDVVVTVTRGGYAKRTKTDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNL 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G RG+ + N+L+ GERI ++ + E Y+V AT+ G Sbjct: 573 GRVYRAKGYELPEGGRDGRGQHVANLLAFQPGERIVAVLDIEDYE---QAPYLVLATRGG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS----------RDEILSVETCTQENDILLTTKLGQC 705 V++ +LS++ G IA+ L S DE+ + +++ D+ L ++ G Sbjct: 630 IVKKTRLSEYDSNRSGGLIAINLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMS 689 Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VRF + +R GR + GV G+ D++++MA+ Sbjct: 690 VRFEATDENLRPM-GRATSGVTGMKFRGEDELLAMAVARD-------------------- 728 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + F+ V+E G+ KRT +R R Sbjct: 729 ---------------------------------DLFVFVVTELGYAKRTKIEHYRKQGRG 755 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G GI+ +++ E G LV V+++D++++V G ++R V+E+ R T GV Sbjct: 756 GLGIKVAKLTE--ERGDLVGALTVSEDDEVLVVMQAGRVVRSRVDEVPDKGRDTMGVTFA 813 Query: 884 STAKDERVVSVERIRE 899 +R++++ R E Sbjct: 814 RPETGDRILAITRNVE 829 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 110/292 (37%), Gaps = 25/292 (8%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD--------EDFVTDLFI 582 + + +V + G VK+ LS Y + R GG + +D + + Sbjct: 614 EDYEQAPYLVLATRGGIVKKTRLSEYDSNRSGGLIAINLRSHPGADGTEEVDDELFAATL 673 Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642 VS + S G + + + P R + + + + + Sbjct: 674 VSEDEDLFLVSRKGMSVRFEATDENL-RPMGRATSGVTGMKFRGEDE------LLAMAVA 726 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDIL 697 ++L+V T+ G +R K+ + + G + +K+ D ++ T ++++++L Sbjct: 727 RDDLFVFVVTELGYAKRTKIEHY-RKQGRGGLGIKVAKLTEERGD-LVGALTVSEDDEVL 784 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 + + G+ VR + + GR+++GV GD++ +AI + + D + + Sbjct: 785 VVMQAGRVVRSRVDEV-PDKGRDTMGVTFARPETGDRI--LAITRNVERVIDVEVEAEEV 841 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 A + ++ +D + E ++E+ I VS G G Sbjct: 842 SEATTSGVDDPIADVAGSGDDLAAAEGADEAPIGGAPVEERGIDPVSGAGDG 893 >gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] Length = 856 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 346/915 (37%), Positives = 522/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDQ----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECR+ A ++ D+ ++TVDF PNYDG QEP +L +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DNP+ + ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE+ SG+R+ IV+TE+PYQVN M+ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEE-SGNRQTIVITELPYQVNPDNMISNIAESVANGKIAGI 295 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 G + + +VQ AIL ++L RL L R I + Sbjct: 416 --------------------------GLKTLLAVDDVQADAILAMQLRRLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + I + DIL+ R I+ EL + ++ RRT+IV D+ DED I R Sbjct: 450 ELAEIEEIIADLKDILAREERQRQIVHDELAEIVEKYGDERRTQIVAASGDVTDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ E + Y+V ATK G Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATKQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ++SM++V Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHD------------------------------ 715 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+GKRT+ ++ R G G+ + Sbjct: 716 -----------------------GGYLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V++ D+I ++ G +IR VN+IR +SRAT GV + + + D +++ Sbjct: 753 P--KRGKLIGAIAVDEEDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLSNDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E ++A++ Sbjct: 811 IDRNVEDHGEEDAQA 825 >gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52] Length = 827 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 362/911 (39%), Positives = 555/911 (60%), Gaps = 93/911 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++ ++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D + V++NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F G A+ LD DE++S + + +L+ + LG ++FP+ +R GR Sbjct: 627 NLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GR 685 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV GI L + D V+ ++ Sbjct: 686 NARGVIGIRLNENDFVVGAVVISDDGNK-------------------------------- 713 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKGI +++ + G Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 751 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV V V+D + +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809 Query: 899 ESEIVDEAEST 909 + E + E++ Sbjct: 810 KEEEPENLETS 820 >gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] Length = 837 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 333/912 (36%), Positives = 524/912 (57%), Gaps = 97/912 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I++EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I G+V+GKYHPHG+ A+YD + RMAQ+WSLR L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+N DI++D L++ I+ PDFPTG +I G G+K A+ TGRG +++R Sbjct: 183 PHNLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ +E IVVTE+PYQV+ + +L+K ++LV+E ++ I D+RDES R R+V Sbjct: 243 AKAEFQEVR-GKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FS+N +AL +PE+ L ++ FV R EVV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKGRPEQLNLKDLIYHFVEHRHEVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G + + + + IIRF P+ Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKE---------------- 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+++Q AIL L L R+ + E EI++ Sbjct: 406 -------------DLIAEFDLTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ Q ++I + DE NN Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRAV-GRNSQGVRG 691 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I L + D+V+ M + + Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838 +E+ +L VSE G+GKR+ + +RI+NR GKG++ +++ + Sbjct: 711 ----------REETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITE--KT 758 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA+ V + + +++++ G IR+ ++ +RI+ RAT+GV + + + + +V ++ Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVM 818 Query: 899 ESEIVDEAESTE 910 + + + + E Sbjct: 819 KEDDDETDAAEE 830 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 56/421 (13%), Positives = 148/421 (35%), Gaps = 40/421 (9%) Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNA 424 + ++ +TK + L + E+++ ++ ARR ++ + Sbjct: 431 KALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGE 490 Query: 425 SDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++D+I D + + G LSE + ++ + T +D + + S Sbjct: 491 FSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNH 550 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------------E 530 + L + + K R ++ +D + Sbjct: 551 Q--YLLFFTQKGKCFWMRVYEIPEGSKTA---KGRAVQNLINIEQDDKIKAFVSVQNLKD 605 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + + ++ + G VK+ L Y R+ G + + +++ D + + + S + ++ Sbjct: 606 EEYINNNYLIMATKQGTVKKTLLKEYSRPRQNG--INAITIKEGDELIEAKLTSGSSQLM 663 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 G + ++ ++G + + L+ M E+ V+ Sbjct: 664 LAVKSGRAIRFGEDKVRAVGRNSQG---VRGIDLDTENDEVVGMIAIENPR---EETVLV 717 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ----------ENDILLTT 700 +++G +R+ + + +I + + +S+ T D+++ Sbjct: 718 VSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITEKTGQLVAIKSVLEGEDLMIIN 777 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 K G +R I +R +GR + GV+ I++ D + ++ V+ D D + + + Sbjct: 778 KSGIAIRLSIDTLR-ISGRATQGVKLINIKGKDSIAAVTKVMKEDDDETDAAEEVTPPTE 836 Query: 761 Q 761 + Sbjct: 837 E 837 >gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75] Length = 828 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 364/902 (40%), Positives = 550/902 (60%), Gaps = 90/902 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RY Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + + Sbjct: 187 PPHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RV Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++ Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTGL RD I+ E +L I + I Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKR Sbjct: 460 LRSEDRLNGVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 520 VDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A GKA++N++SL E+I + + + + F TK+G V+R LS+F Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636 Query: 671 SGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 I A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI Sbjct: 637 YSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ ++ Sbjct: 696 LNENDFVVGAVVI----------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+ Sbjct: 709 -----SGDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVD 761 Query: 849 DND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D + +++++ +IRV + +IR R GV + +TA ++VV V + E + E Sbjct: 762 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPENLE 819 Query: 908 ST 909 ++ Sbjct: 820 TS 821 >gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908] gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018] gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017] Length = 828 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 551/912 (60%), Gaps = 94/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ ++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++ + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRGI L + D V+ ++ Sbjct: 686 RTTRGVRGIKLNENDFVVGAVVISDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV+V V+D + +++++ +IRV + +IR R GV + +T ++VV V Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTT--DKVVYVNSC 809 Query: 898 RESEIVDEAEST 909 + E + E++ Sbjct: 810 PKEEEPENLETS 821 >gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38] gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38] Length = 827 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 358/901 (39%), Positives = 546/901 (60%), Gaps = 89/901 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RY Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + + Sbjct: 187 PPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RV Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++ Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIII 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLT L RD I+ E +L I + I Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S RL ++K ELL +K++ +PRRT I E +++ ED I E MVV++S+ GYVKR Sbjct: 460 LKSEDRLNEVVKIELLEIKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 520 VDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A GKA++N++SL E+I + + + + F TK+G V+R LS+F Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI L Sbjct: 637 CGVRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ ++ Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+D Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761 Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + +++++ +IRV + +IR R GV + +TA ++V+ V + E + E+ Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCPKEEEPENLET 819 Query: 909 T 909 + Sbjct: 820 S 820 >gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] Length = 822 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 356/840 (42%), Positives = 519/840 (61%), Gaps = 33/840 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + +E I+V+E+PYQVNKA ++E+IAELVRE++I I DLRDESDR G R Sbjct: 243 LRAKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G + ++DED I E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L L++ E I ++P + + Y+VF+TK G +R+ LS F I Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIETFD---DERYLVFSTKQGIAKRSSLSSFAHI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+V+SM I+ + + + Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ ++ ++ G R S D + R +G++ +S +E + V V Sbjct: 753 VTTVVGNED--LMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKVT 810 Score = 91.8 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 22/238 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + +Q + + G RF +S R + + + L Sbjct: 385 IALDHLDEVIDLIRRSQTTE---AAREGLMERFSLSE------RQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ IV K + R +S E + V G + + Sbjct: 436 EREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L E ++T++ KG+ KR +R R G+G++ S+ + + L + Sbjct: 496 DDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHL---LITS 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903 +D ++ ++KG + + EI R KG+ I + KDE + ++ I + Sbjct: 553 THDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMIPIETFDDE 610 >gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25] gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25] Length = 906 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 381/872 (43%), Positives = 539/872 (61%), Gaps = 42/872 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+ E + ++ AT G V++ L+ F Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ EN+I+L +K G+ VRF + Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA+ DQV+S+ + H +A Sbjct: 723 DENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTA 781 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + S Q ++ E ++ +++ G RT + Sbjct: 782 LSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDE--MMMITDAGTLVRTRVGEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ +G+ ++ ++V + + + D Sbjct: 840 GRNTQGVTLIRTAEDE---SVVGLQRIEEVDD 868 Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 71/447 (15%), Positives = 153/447 (34%), Gaps = 36/447 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R + A Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR-----DGFGDARRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G +++E + + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHGGYV-KYQVLSDYESQRRGGKGKSATKMKDEDHIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +R++D + + I + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLREDDSLIGVDITNGENEIMLFSKAG 700 Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640 V + K G P+ + K + S +G ++ Sbjct: 701 KVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697 + ++ T++G +R LS++ R + + + + + + ++++ Sbjct: 761 VPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMM 820 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 + T G VR + + GRN+ GV I A+ + V+ + + D + + Sbjct: 821 MITDAGTLVRTRVGEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPAGEEAEA 879 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784 + + DT E + + Sbjct: 880 LESTDENTQQDTPEAPAADDAEEGNEE 906 >gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] Length = 906 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 381/872 (43%), Positives = 539/872 (61%), Gaps = 42/872 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+ E + ++ AT G V++ L+ F Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ EN+I+L +K G+ VRF + Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA+ DQV+S+ + H +A Sbjct: 723 DENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTA 781 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + S Q ++ E ++ +++ G RT + Sbjct: 782 LSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDE--MMMITDAGTLVRTRVGEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ +G+ ++ ++V + + + D Sbjct: 840 GRNTQGVTLIRTAEDE---SVVGLQRIEEVDD 868 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 70/447 (15%), Positives = 152/447 (34%), Gaps = 36/447 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R + A Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR-----DGFGDARRTEITAA 523 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S D+ +LI + Y+ + Q + E + G +++E + + + Sbjct: 524 SHDIDMEELIAREDVVVTLSHGGYV-KYQVLSDYESQRRGGKGKSATKMKDEDHIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536 D + S + ++ + T R IV L E E D + Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL+ + R G V +R++D + + I + ++ FS G Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLREDDSLIGVDITNGENEIMLFSKAG 700 Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640 V + K G P+ + K + S +G ++ Sbjct: 701 KVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697 + ++ T++G +R LS++ R + + + + + + ++++ Sbjct: 761 VPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMM 820 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 + T G VR + + GRN+ GV I A+ + V+ + + D + + Sbjct: 821 MITDAGTLVRTRVGEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPADEDAEA 879 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784 + + D E + + Sbjct: 880 LESTGENTQQDASEAPAADDAEEGNEE 906 >gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori] Length = 826 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 363/901 (40%), Positives = 549/901 (60%), Gaps = 89/901 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RY Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + + Sbjct: 187 PPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RV Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++ Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTGL RD I+ E +L I + I Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S RL G++K ELL VK++ +PRRT I E ++ ED I E MVV++S+ GYVKR Sbjct: 460 LKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 520 VDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A GKA++N++SL E+I + + N + F TK+G V+R LS+F Sbjct: 580 RIAMGKAIVNLISLAPDEKIMATLSTKDFS---NERSLAFFTKNGVVKRTNLSEFGSNRS 636 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI L Sbjct: 637 CGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ ++ Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+D Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761 Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + +++++ +IRV + +IR R GV + +TA ++V+ V + E + E+ Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCPKEEEPENLEN 819 Query: 909 T 909 + Sbjct: 820 S 820 >gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70] gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70] Length = 825 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 369/840 (43%), Positives = 527/840 (62%), Gaps = 34/840 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A I GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEVVD +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A++ VILN LY++T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM++ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G+ + +DED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARG +IN+L L++ E I TI+P + +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTARGIPIINLLELDKDEWINTIIPINNE--FDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV+ I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+V+ M I+ D + Y K A I + N + G++ Sbjct: 694 LEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E+ ++ ++ G R + D R+ +G++ +S +E + V V Sbjct: 754 VKTV---TGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKV 810 >gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] Length = 860 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 351/915 (38%), Positives = 529/915 (57%), Gaps = 97/915 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ I V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G +N Sbjct: 2 EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KCAR G++MGKYHPHG++++Y+ L R+AQ W++R L++GQGNFGS+DGD PAA R Sbjct: 62 PTRKCARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ +TVDF+ N+DG F+EP VL R PN+L+NG GIAVGMATN Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 + HNL E ++ C+A ID +I +D LM+ ++ PDFPTG VI G G+K A+ TGRG I Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIRG + IE+ E+I++ EIPYQV K+ M+ KIA+LV EK+I I+D+ DES +G Sbjct: 242 VIRGKADIEEYHS-HERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL +P + L ++ FV R +V Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S A LM+ Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAI+++RL +LT L D +++E N L I Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS + + +I++E + ++ RR+ IV D+ ED EDMV+T+SHLGY+ Sbjct: 455 LFLSDINMRMELIQEECREIIEKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G RDEDFV ++ + H +++ F++ G VY +V+ +P Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665 GS ++G+ + N+L L++ RIT + D N Y+VFAT+ G +++ L+ + Sbjct: 575 GSKSSKGRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHY 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++G A+ L D+++SV +I L + G+CVRF +R GR + GVR Sbjct: 635 ANPRKTGVRAINLRDDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVR 693 Query: 726 GISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 GI L D+V+ M + ++D + K Sbjct: 694 GIRLDNDPNDKVVGMVVHRLKNSDETILVISEK--------------------------- 726 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 G+GKR+ D+RI+ R KG++ +V+ ++ G L+ Sbjct: 727 -----------------------GYGKRSRIDDYRITKRGAKGVKTINVT--DKTGQLID 761 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSV-------- 894 + V D+D I++++ G IR+ + ++R+ RAT+GV + K + + S+ Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVVAEEE 821 Query: 895 --ERIRESEIVDEAE 907 E + E+++ D +E Sbjct: 822 EPELVDEADLDDPSE 836 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 57/431 (13%), Positives = 147/431 (34%), Gaps = 25/431 (5%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 + ++ N+ ++R L + E+++ + + + + D+ Sbjct: 438 KLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIEKYGDERRSEIVYASEDLNPED 497 Query: 432 DLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-- 485 D+ S LSE +T+ + + D + ++ Sbjct: 498 FYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMML 557 Query: 486 -------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L + + + ++ D + R T + D D + + Sbjct: 558 FTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYL 617 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G +K+ L+ Y R+ G + +RD+D V + + + + + + G Sbjct: 618 VFA-TEQGLIKKTLLAHYANPRKTG--VRAINLRDDDQVVSVALSNGNCEIFLANRNGRC 674 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + + A G I L + +++ ++ ++ ++ ++ G + Sbjct: 675 VRFNEQEVRPMGRTATGVRGI-RLDNDPNDKVVGMV---VHRLKNSDETILVISEKGYGK 730 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R+++ D+ R K ++ D+ + + +++I++ K G +R + +RV Sbjct: 731 RSRIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIRLSMEQVRV 790 Query: 716 FAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV+ I L K D++ S+ V+ + + + ++ D + Sbjct: 791 M-GRATQGVKMIDLNKRSDEIASICNVVAEEEEPELVDEADLDDPSEFVPQEEDLNDFDD 849 Query: 775 LKNDSSVEGNI 785 Sbjct: 850 SPAQDEESSED 860 >gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] Length = 879 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 343/913 (37%), Positives = 511/913 (55%), Gaps = 95/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ +S D I + I +EMQ SY+ YA++VI+GRA+PD+RDG+KPVHRRI++ M Sbjct: 1 MSDDTLSGDTY--DRIFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W +R L++GQGNFGS Sbjct: 59 YDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC++ A ++ D+ ++ VDF PNYDG QEP VL +R PN+L+NG Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + ++DN D LDA ME ++GPDFPT +I+G +G Sbjct: 179 GIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIVGDSG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE+ R+ IV+TE+PY VN + IAE V ++ I Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEVGT-RQVIVITELPYNVNPDNFISGIAEQVAAGKMTGI 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A V+LN LY+++ L++ FS NM++L P L Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT++ L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 358 QMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + EVQ AIL ++L RL L R I + Sbjct: 418 GLMS--------------------------LLDVDEVQADAILAMQLRRLAALERQKIVD 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L ++ EI + DIL+ R I+ EL V D+ RRT++V D+ +ED I R Sbjct: 452 DLAAIEAEIADYKDILAKPERQRAIVADELREVVDKHGDERRTKLVAATGDVTEEDLIAR 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 512 ENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNF 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ + Y+V AT+ G Sbjct: 572 GRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVIQIQTY---QDAPYLVLATRDG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ ++DILL ++ GQ +RF + Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M V Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTTVSDG----------------------------- 718 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 Q++L + G+GKRT ++ R G G+ + Sbjct: 719 ------------------------QYLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYT 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ V ++DQI ++ G +IR VN+IR +SRAT GV + D +++ Sbjct: 755 P--KRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLGDDVELLA 812 Query: 894 VERIRESEIVDEA 906 ++ E E EA Sbjct: 813 IDVNVEDEGEQEA 825 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 13/271 (4%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + D L +L Sbjct: 613 QTYQDAPYLVLATRDGRVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVG--DDDDIL 670 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R A + + +++ + + Y++ Sbjct: 671 LVSEQGQSIRFTADDEQL-RPMGRATAGVKGMRFRGDDQLLAMTTVS------DGQYLLV 723 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R ++++ R G M R +++ +++ I T G +R Sbjct: 724 ATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGALAVEEDDQIFAITSAGGVIR 783 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ IR + R ++GVR + L +++++ + + + + + + + + Sbjct: 784 TEVNQIRP-SSRATMGVRLVDLGDDVELLAIDVNVEDEGEQEATAVAKGEKTLEEVSDTV 842 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + T + + ++ + E E Sbjct: 843 SSAASTEVSGTAVNVNSVETDEVGESHDYED 873 >gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] Length = 819 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 358/889 (40%), Positives = 537/889 (60%), Gaps = 86/889 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K Sbjct: 2 SNINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKK 61 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEV+GKYHPHG++A+Y+ + RMAQD++ R LI+G GNFGS+DGD AA RYTE Sbjct: 62 SARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEA 121 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K LL D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP H Sbjct: 122 RMAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPH 181 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++DG +A+I+N +I + LME + GPDFPTG +I G GI AY TGRG + +RG Sbjct: 182 NLGELLDGVLALIENKEITPEELMEYVTGPDFPTGGIIDGTKGIYEAYTTGRGRVRVRGK 241 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVI 312 IE+ + I++TEIP+QVNKA ++EKIAELV+EK+I I DLRDES R+G R+V+ Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +++LN++Y+YT LQ+ F + ++AL P+ L IL ++ R +V+ RR Sbjct: 302 ELKRDEEPEIVLNKIYKYTELQNTFGIILLALVDNMPKVLNLKEILSHYINHRFDVITRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L K+ +RAH+L G +A+ N+D ++ IIR S + TAR L+++ Sbjct: 362 TKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEK------------ 409 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 S++Q R+IL+++L RLTGL R+ + NE +L IKE DILS Sbjct: 410 --------------YSFSDIQARSILDMKLQRLTGLEREKVENEYTALMEHIKELKDILS 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + R+ IIK++ +K++ RRT+I E LD+ ED I E ++VT+++ GYVKR+ Sbjct: 456 NDQRVYDIIKEDCEELKEKYSDERRTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMN 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L Y+AQ+RGGKG S + DF+ +++ S +++ F+ G VY KV+ +P S Q Sbjct: 516 LDKYKAQKRGGKGVSTQNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQ 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RGK + N+++L + E++ +I+ E + ++F TK G V++ LS+F +NRSG Sbjct: 576 SRGKLIANLINLQENEKVKSIIKTREFS---DTQDLLFVTKEGLVKKTVLSEFKNLNRSG 632 Query: 673 KIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+KL D+++ V + + + TK G ++FP R GR ++GVRGI+L K Sbjct: 633 LRAIKLKDGDDLIFVGLVESPNDQVFIATKNGYSIKFPHENARNM-GRATIGVRGINLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+S I+ D Sbjct: 692 DDDVVSAVIIKRDDTT-------------------------------------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILTV+E G+GKRT ++ + +RSGKG+ ++ + G +V V V + + Sbjct: 708 --------ILTVTENGYGKRTREDEYPLQSRSGKGVINLRCNE--KTGVVVEVTSVTEEE 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ ++ G +IR P + I + RAT+GV I +DE++VS+ ++ ++ Sbjct: 758 ELMAITSNGIVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKVMKN 806 >gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7] Length = 830 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 367/910 (40%), Positives = 553/910 (60%), Gaps = 93/910 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 NELGLTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ +LD ++E I GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT +E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTKH-KEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+E IL S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIEELNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L VY Q RGGKG+ ++DF+ F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKVYERQNRGGKGKLSGSTYEDDFIESFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P + A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEANRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F G A+ LD DE++S + + +L+ + G ++FP+ +R GR Sbjct: 627 NLSEFGSNRSCGIRAIVLDEDDELVSAKIVDKNAKHLLIASHSGTFIKFPLENVREM-GR 685 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRGI L + D V+S ++ Sbjct: 686 STHGVRGIKLNENDFVVSAVVISDDSNK-------------------------------- 713 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R R GKG+ ++K + G Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQARGGKGVIGMKLNK--KTG 751 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV+V V+D + +++++ +IRV + +IR R GV + TA ++VV V Sbjct: 752 NLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDTA--DKVVYVNSCP 809 Query: 899 ESEIVDEAES 908 + E + E+ Sbjct: 810 KEEEPENLET 819 >gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129] gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae] Length = 856 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 345/903 (38%), Positives = 524/903 (58%), Gaps = 95/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ ++ D + + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDDLLGGDGY--DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR + MG++HPHG++AIYD L R+AQDW++R +++GQGNFGS Sbjct: 59 YDSGYRPDRSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTECRL A ++ D+ ++TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++DNP+ D L+A M+ ++GPDFPT I+G G Sbjct: 179 GIAVGMATNIPPHNLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGSQG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV+ IE+ G+R+ IV+TE+PYQVN M+ IAE VR+ ++ I Sbjct: 239 INDAYTTGRGSIRMRGVTSIEE-EGNRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 358 QMLRHYVTHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIART 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q AIL ++L RL L R I + Sbjct: 418 GLME--------------------------LLTVDEIQADAILAMQLRRLAALERQKIVD 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+ R I++ EL + D+ RRT+I+ D+ +ED I R Sbjct: 452 ELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIAR 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++QRRGGKG G ++ +D V F+ STH +LFF++ Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNF 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L ERI ++ E + Y+V AT G Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATAQG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++LSD+ G IA+ L+ D+++ C ++D+LL ++ GQ +RF + + Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQL 688 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M +V Sbjct: 689 RPM-GRATAGVKGMRFKGDDQLLAMTVVKP------------------------------ 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + F+L + G+GKRTS ++ R G+G+ + Sbjct: 718 -----------------------DAFLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYT 754 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+A V+++D+I+ ++ G +IR VN+IR +SRAT GV + + +++ Sbjct: 755 P--KRGKLIAAVVVDEDDEILAITSAGGVIRTVVNQIRPSSRATMGVRLVNLEDGVELLA 812 Query: 894 VER 896 ++R Sbjct: 813 IDR 815 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 21/230 (9%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKGDQVI 736 DE++++ + DI + G + I+ R R +L + V Sbjct: 400 DEVIALIRRSPTVDI---ARTGLMELLTVDEIQADAILAMQLR-----RLAALERQKIVD 451 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 +A + ADY + + + A R + + + + + ++L + Sbjct: 452 ELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIAR 511 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIIL 855 E ++T++ G+ KRT ++ R GKG+R ++ + +V F V+ D I+ Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVSSTHDWILF 567 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902 ++ G + R+ E+ ASR +G + + + +ER+ V +I+ E Sbjct: 568 FTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 617 >gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286] gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286] Length = 819 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 356/906 (39%), Positives = 510/906 (56%), Gaps = 88/906 (9%) Query: 1 MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M+ D+ + + V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSSEAPDPDDPQAASRVDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M +MGV + K + I GE MG YHPHG++AIYD L RMAQ +S+R L++GQGNFGS Sbjct: 61 MHEMGVSSRSAHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDP AA RYTE R+ + LL D+ KDTVDF+ NYD +EP VL + PN+LVNG Sbjct: 121 MDGDPAAAMRYTEARMSPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGM+TNIP HNLGEV+D V +IDNPD +++ LM+ ++GPDFPTG I+G+ I + Sbjct: 181 SGIAVGMSTNIPPHNLGEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIVGKDAIYS 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AYATGRG + +R + + +IVVTEIPYQ NKA M+E+IAE V E I IADL Sbjct: 241 AYATGRGRLRVRADY---EVDPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADL 297 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G R+V+ELKRGA+ DV+ NQL + L+S F V +AL +P TL L+ Sbjct: 298 RDESDRNGVRIVVELKRGANVDVVENQLLE-SHLESTFGVINLALVDDEPRVLTLKETLE 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 +VA R+EVV RR+++ L++A+DRAH+L G A+ N+D+VV +I+ S + + AR EL Sbjct: 357 HYVAHRKEVVRRRSQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRS 416 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + SE Q I+ ++L LT + +I +E Sbjct: 417 Q--------------------------FDFSEEQAAHIVRMQLGSLTSMETAEIESEYED 450 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + I+ IL S LL +IK EL +K E D R+T I+E ++ ED I ED V Sbjct: 451 VQARIERLQTILDSEDELLTVIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCV 510 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V ++ Y+KR+P+ + AQ RGGKG G +D D V+ +F ++H +L F++ G VY Sbjct: 511 VVITEDDYIKRMPVDAFDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVY 570 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P S ARGK+ +NI+ L E IT ++ + E + + T++G V+R Sbjct: 571 RLKTYEIPEMSRTARGKSAVNIIDLGDDEEITAVVSTDDFE---EDECLTMVTRNGYVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + +F I +G IA KL+ D ++ VE D+++ T+ G +RF S +R GR Sbjct: 628 TCVDEFENILSTGIIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREM-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GVRGI L GD+V +M D Sbjct: 687 SARGVRGIDLQDGDKVAAMVATDDHDDRA------------------------------- 715 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +LTV+E G+GKRT ++ +R GKG+ N G Sbjct: 716 --------------------LLTVTENGYGKRTLLAEYSKQSRYGKGLIDIKTDDRN--G 753 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + V ++D ++++S+ G ++R+P ++ R TKGV I + + V SV + Sbjct: 754 RVATAKAVREDDHLVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVASVTVVPA 813 Query: 900 SEIVDE 905 DE Sbjct: 814 EVENDE 819 >gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 816 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 332/892 (37%), Positives = 503/892 (56%), Gaps = 87/892 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + + + +E+++SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+ ++ + K Sbjct: 12 QKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKK 71 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ GE MGKYHPHG+AAIY+ + RM+QD+S+R L++GQGNFGS+DGDPPAA RYTE Sbjct: 72 SARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEA 131 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL +L D+ +DTVD+ PN+D S +EP VL +R PN+LVNG GIAVGMATN+P H Sbjct: 132 RLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPH 191 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C ++DNPD+++ LM + GPDFPTG VI+GR GI +AY TGRG IV+RG Sbjct: 192 NLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIVVRGC 251 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE ++ IV+T+IPY VNK+ ++E I + V+ ++ I D+RDES+R+G R+V+E Sbjct: 252 AEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIRLVLE 311 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L R + ++L QLY T LQ+ F V +AL +P L G+L+ F+ R VV RRT Sbjct: 312 LHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMVVRRRT 371 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA +RAH+L GL A+ +D V+ +IR S +P A+ L++ Sbjct: 372 QYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE------------- 418 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + +E Q +AIL++RL RLT L + ++ EL L +I IL Sbjct: 419 -------------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGD 465 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + L ++++ELL VK RRT I + + D+ ED I ++VV ++ G+++R+PL Sbjct: 466 PAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPL 525 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGGKG G ++ ED V+ + + +TH S+ F+ G V+ K +P Sbjct: 526 QDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPE-PKSG 584 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK + +SL++GE + D + +V TK G +R + + I R+G+ Sbjct: 585 RGKHVSTFISLDEGE----SVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGR 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + L+ D I V E+ +LLTT GQ +R + R GR + GVRGI L D Sbjct: 641 RILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRP-QGRAAKGVRGIKLDPDD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ +++ Sbjct: 700 LVVGCDVIMPG------------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +L +S+ G GKRT +F + +R G G+RA + + G LV + V D+D+I Sbjct: 711 ----RQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGER--TGHLVGAWGVADDDEI 764 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++++ +G ++R ++ SR+ G+ + + ++V V IR S E Sbjct: 765 MVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRCSMEEGE 816 >gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] Length = 822 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 355/840 (42%), Positives = 518/840 (61%), Gaps = 33/840 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + + I+V+E+PYQVNKA ++E+IAELVRE++I I DLRDESDR G R Sbjct: 243 LRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G + ++DED I E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L L++ E I ++P + + Y+VF+TK G +R+ LS F I Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIETFD---DERYLVFSTKQGIAKRSSLSSFAHI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+V+SM I+ + + + Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ ++ ++ G R S D + R +G++ +S +E + V V Sbjct: 753 VTTVVGNED--LMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKVT 810 Score = 91.8 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 22/238 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + +Q + + G RF +S R + + + L Sbjct: 385 IALDHLDEVIDLIRRSQTTE---AAREGLMERFSLSE------RQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ IV K + R +S E + V G + + Sbjct: 436 EREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L E ++T++ KG+ KR +R R G+G++ S+ + + L + Sbjct: 496 DDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHL---LITS 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903 +D ++ ++KG + + EI R KG+ I + KDE + ++ I + Sbjct: 553 THDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMIPIETFDDE 610 >gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 911 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 337/894 (37%), Positives = 494/894 (55%), Gaps = 78/894 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + + V +T E+QNS+L YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Sbjct: 33 PAKGRVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRG 92 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L+ GQGNFGS D AA RY Sbjct: 93 WNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRY 152 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TECR+ A ++ D+ + TVDF+PNYD EP VL AR+PN+LVNG GIAVGMATNI Sbjct: 153 TECRMAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNI 212 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL EV + +++P+ + L M ++GPDFP GA+I+GR GI++AY TGRG Sbjct: 213 PPHNLREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIVGRKGIEDAYRTGRG 272 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305 S+ +R V +IE+ R ++VVTE+PY N + +KIA+LV R+ I+D+RD+S R Sbjct: 273 SVTMRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSAR 332 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I LKR A V++N LY++T LQ F NM+AL P L ++ +V + Sbjct: 333 TGQRLAIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDNVPRTLRLDQFIRYWVLHQ 392 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+VRRT++ L +A AH+ GL A+ LDEV+ +IR SP E A L + Sbjct: 393 IEVIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQASAGLQK------ 446 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + + +VQ AIL ++L RL L R I +++ L I Sbjct: 447 --------------------LLDIDDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL++R R I+ EL + + RRT+I+ D DED I +DMVVT++ Sbjct: 487 DLKDILANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDDDMVVTITRG 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR YR QRRGGKG G +R +D V LF + H +LFF+ G VY+ K W+ Sbjct: 547 GYAKRTRTDQYRPQRRGGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP G A+G + +LS E+I ++ E + Y+V ATK G V++ LS + Sbjct: 607 LPEGGRDAKGGHVAGLLSFLPDEKIAQVLALRSYE---DAEYLVLATKQGLVKKTALSAY 663 Query: 666 IQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722 ++G IA+ DE++ E +D+LL ++LGQ +RF +R GR + Sbjct: 664 DSPRQAGLIAVNFRADDDELIGAELVDASDDVLLISRLGQAIRFRADDEQMRPM-GRTTS 722 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ +GD+++SM++V E Sbjct: 723 GVTGMRFREGDELLSMSVVP--------------------------------------AE 744 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + + + + ++ TV+ GF KRT D+R+ NR G GI+A + +E G LV Sbjct: 745 RGEASDEHADEEDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMD--DERGHLV 802 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V D+D++I + G + R V E+ R T GV + V+++ Sbjct: 803 GGLVVTDSDEVIAIKASGQVTRSSVAEVNPTGRDTMGVKFVGVRGKDEVIAIAL 856 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 6/170 (3%) Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M + AD + + + + G+ + + + + ++ + Sbjct: 478 MKELDTLIADLKDILANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDD 537 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++T++ G+ KRT + +R R GKG+R + +E+ L A ++ I+ + Sbjct: 538 DMVVTITRGGYAKRTRTDQYRPQRRGGKGVRGATLRADDEVQHLFAT---TNHQWILFFT 594 Query: 858 DKGTLIRVPVNEIRIASRATKG--VV-IFSTAKDERVVSVERIRESEIVD 904 D G + R+ ++ R KG V + S DE++ V +R E + Sbjct: 595 DHGRVYRIKTWQLPEGGRDAKGGHVAGLLSFLPDEKIAQVLALRSYEDAE 644 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 15/260 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ LS Y + R+ G D++ + V VL Sbjct: 640 YEDAEYLVLATKQGLVKKTALSAYDSPRQAGLIAVNFRADDDELIGAEL-VDASDDVLLI 698 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645 S LG + + P R + + + +G+ + ++ P + ++ Sbjct: 699 SRLGQAIRFRADDE-QMRPMGRTTSGVTGMRFREGDELLSMSVVPAERGEASDEHADEED 757 Query: 646 --LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700 LYV T G +R + D+ NR G + DE + T ++++ Sbjct: 758 EPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLVGGLVVTDSDEVIAIK 817 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 GQ R ++ + GR+++GV+ + + D+VI++A+ + E + Sbjct: 818 ASGQVTRSSVAEVNP-TGRDTMGVKFVGVRGKDEVIAIALNPEKPEEEGEGDETEPEATD 876 Query: 761 QRRLISGDTEEITSLKNDSS 780 + T+ I + ++ Sbjct: 877 EMGNAVPATDVIEADASEDG 896 >gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] Length = 828 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 371/900 (41%), Positives = 536/900 (59%), Gaps = 87/900 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + +SI + ++NSYL YA++VI+GRA+PD+RDGLKPVHRR LF M +MGV +NK Sbjct: 2 SDTSKTIDISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKA 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GK+HPHG++A+YD + RMAQD+SLR L++GQGNFGSVDGD AA RY Sbjct: 62 YKKSARIVGDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + LL DL KDTVDF NYDG+ EP VL R P +LVNG GIAVGMATNI Sbjct: 122 TEIRLSKISDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ E++ +ID P D + ++ + GPDFPT +I+G I+ AY TGRGSI I Sbjct: 182 PPHNITEIISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKDIQTAYRTGRGSITI 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R IE+T + I+V EIPY VNKA+M+EKIA+LV+EK+I I DLRDESD+ G RV Sbjct: 242 RARVLIEETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+G + DV+LN+LY++T LQ+ F NMVA+ KP+ +L IL+ F+ R VV Sbjct: 302 VIELKKGENVDVVLNRLYKFTQLQTSFGFNMVAIVDGKPQTLSLREILEEFLKHRVTVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++LL KA R H+L GL AV N+DEV++ I+ S + A+ L + Sbjct: 362 RRTQFLLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQ---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E+Q ++ILE+RL +LTGL + ++ E ++ +I+ I Sbjct: 412 ----------------FGFTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +RS ++ +IK EL V D+ RRT I GL + EDED I + VVT++H GY+K Sbjct: 456 LGNRSVMMSVIKDELQDVLDKYGDDRRTEIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKA 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS Y AQ+RGGKG++G +DEDFV L + + HT ++FF++ G V+ KV+ LP Sbjct: 516 TLLSSYVAQKRGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQ 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+L E + +++ P + + Y+ FATK G +++ L +F Sbjct: 576 RDAKGRHISNLLTLEPEEFVASVLALPAET---DGKYLFFATKSGTIKKTSLEEFKSGR- 631 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG +A+KL DEIL+ + T E+ ++L+TK G+ ++F + R GR++ GVRGI+L Sbjct: 632 SGIVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPM-GRSTSGVRGITLE 690 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+++SM ++ A Sbjct: 691 ARDELMSMEVLTGA---------------------------------------------- 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +IL+V+ G+GKRT ++R+ R GKG++ VS + G +V V DN Sbjct: 705 -------PYILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSP--KTGFVVGAKQVTDN 755 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D +++++ IR V I R T GV + T D+ +++ I+E I +++++ E Sbjct: 756 DDVMIITRSAKTIRTEVQGISKMGRDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNE 814 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 91/230 (39%), Gaps = 19/230 (8%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +K+ L +++ R G + +RD D + I + +V+ + G + Sbjct: 614 TKSGTIKKTSLEEFKSGRSG---IVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFS 670 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + ++L + + ++ Y++ T G +R + Sbjct: 671 STD---ARPMGRSTSGVRGITLEARDELMSMEVLT------GAPYILSVTSAGYGKRTPV 721 Query: 663 SDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 ++ ++ G +KL ++ + T +D+++ T+ + +R + I G Sbjct: 722 DEY-RVQTRGGKGLKLCRVSPKTGFVVGAKQVTDNDDVMIITRSAKTIRTEVQGISKM-G 779 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 R+++GV+ + D +I+ A++ D + ++ + + D Sbjct: 780 RDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNEREGTGSEGQGGTED 828 >gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] Length = 876 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC Sbjct: 42 RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221 Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV DG +D+PD + L+ + I+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 222 MCEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + EVQ AIL ++L RL L R I +E L I+I + D Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+K Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L GE I ++ P + Y+V AT+ G V++ L ++ Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671 Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F +R GR Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD+++ M +V Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E+ Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857 Query: 901 EIVDEA-ESTE 910 + + E E Sbjct: 858 DDEENQLEEKE 868 >gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] Length = 809 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 353/891 (39%), Positives = 555/891 (62%), Gaps = 86/891 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E E GI V I+ +M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ + Sbjct: 1 MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K AR+ G+VMGKYHPHG+++IY+A R+AQD+++R L++GQGNFG++DGD Sbjct: 61 VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K A +L D+ KDTV+F PN+D +EP +L +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HN+ EV+DG V IDN DI + L E+I+GPDFPTGA+I+GR GI AY TGR Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R V+ I + REQI++TE+PYQVNK+A++ KIAEL ++K I I+ + D S++ Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+LK+ A+A+V+LN+LY+ T LQ + + +AL +P+ L +++ +V + Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+ RRT++ LNKA RAH++ GL IA+ N+D V++IIR S + + + Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKF-------- 412 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D L+++Q++AIL++RL RLTGL R+ ++NE + L +IK Sbjct: 413 ------------------DREFSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL + L+ +IK ELL +KD+ RRT I D++ ED I ED+++T++ + Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQM 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P Y+ Q+RGG+G + + +++DFV +LF+ STH +LFF++ G VY+ K + Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G A++N+L+L++GE+IT+++ E + N Y++ T+ G +++ +F Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFD---PNYYLLMVTEKGLIKKTSNKEF 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G I +KL D+++SV + +I+L TK G+ +RF +R GRN++GV+ Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D ++S IV Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++LTVSE GFGK T ++R NR GKGI +S+ + G + A Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 VN +D I+L++D G +IR+ +++I + SR T GV + + D +VV++ + Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKVVAIAK 805 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 101/267 (37%), Gaps = 61/267 (22%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 ++ ++ T+ G ++R + R G A+ D + + + Sbjct: 496 IDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTH 555 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L T G+ R + AGRN+ G V ++L KG+++ S+ V Sbjct: 556 DRLLFFTNKGKVYRLKAFEV-PEAGRNAKGTAVVNLLNLDKGEKITSVINV--------- 605 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 E ++L V+EKG K Sbjct: 606 -----------------------------------------EEFDPNYYLLMVTEKGLIK 624 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 +TS+ +F N G+ + ++ L++V V +++IILV+ +G IR +E+ Sbjct: 625 KTSNKEF--KNIRQNGLIGIKLRDDDK---LISVHLVRGDEEIILVTKEGKSIRFSTDEL 679 Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897 R R T GV + +D+ +VS + + Sbjct: 680 RDQGRNTMGVKSMNLDEDDTIVSSDIV 706 >gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 810 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 348/895 (38%), Positives = 532/895 (59%), Gaps = 88/895 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + E GI V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRI++GM +G+ + Sbjct: 3 ENVNENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K A + GEVMGK+HPHG+++IYDA AR+AQD+++R L++GQGNFG+VDGD PAA Sbjct: 63 KSYRKSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAP 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDTVDF PNYD EP VL +R+PN+LVNG GIAVGMAT Sbjct: 123 RYTEMRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+ HNLGE + + I+N DI+++ LM+ I+GPDFPTGA+ILG+ GI +AY TGRG I Sbjct: 183 NMAPHNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-G 307 +R + IE+ R +IV+TEIPYQVNK ++ KIA+LV+ K I I+++RD S + G Sbjct: 243 QVRARAEIEEHK-GRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 ++ I+LKR A+ +V+LN LY+ T +Q F + + L +P+ L I+K +V + Sbjct: 302 IKIDIDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNGEPKVLNLKEIIKYYVDHQRN 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA RAH++ GL IA+ N+D +++I+R S + + A+ + + Sbjct: 362 VVRRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKE------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L+++Q +AIL++R+ RLTGL R+ + E L I + Sbjct: 415 -------------------FGLTDIQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL ++ L I +EL +K++ RRT + D++ ED I ED+V+T++ GY Sbjct: 456 KSILENKKLLDNTIIEELEEIKEKYSDLRRTVLAPDEGDIDSEDLIEEEDVVITLTEFGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P Y+ QRRGG G S + R+EDFV D++I STH ++LFF++ G VY K + +P Sbjct: 516 IKRMPEGTYKPQRRGGTGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S QA+G A+IN+L+L E +T ++P N +V ATK+G +++ S+F + Sbjct: 576 ESSRQAKGTAIINLLNLEGDEFVTAVIPVRN---VDENANLVMATKNGLIKKTSYSEFEK 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I ++G IA+ L+ D ++ V + ++I++ TK G +RF S +R GR ++GV+ I Sbjct: 633 IRKNGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNM-GRTAMGVKSI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+V+S I Sbjct: 692 DLKNDDEVVSFEI----------------------------------------------- 704 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++++L +SE GFGK T ++R NR+G G+ ++ + G LV+ + Sbjct: 705 ------PQDDKYLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATE--KSGKLVSAKVI 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + +D+I++++ G +IR+ I + R T GV + + E VVSV + EI Sbjct: 757 DKSDEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNIKDSE-VVSVAKYIGEEI 810 >gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320] gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320] Length = 877 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 378/843 (44%), Positives = 529/843 (62%), Gaps = 19/843 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR + Sbjct: 187 LGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+V+E Sbjct: 247 DIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ AF+ R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D V+ +IR +P P A+ L+ + W+ + +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLER 426 Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DS+ DG YL+E Q +AIL+LRL +LTGL + + +E L ++I Sbjct: 427 AGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL ++K + + PRRT I E D+ ED I E++VVT+SH Sbjct: 487 AELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 547 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ +IN+L L Q ERIT I+P E E +V AT G V++ L D Sbjct: 607 QLPEASRGARGRPIINLLPLEQDERITAILPVREYE---EGKFVFMATASGTVKKTPLQD 663 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ DE++ V+ N+ +L + G+ VRF +R GR + GV Sbjct: 664 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGV 722 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L D+V+S+ I + Q + + T V Sbjct: 723 RGMKLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKN--RATQGVISIKVSER 780 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + I+ ++ G RT + I R+ +G+ ++ +V + Sbjct: 781 NGKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDEL---VVGL 837 Query: 845 FPV 847 V Sbjct: 838 QRV 840 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R + + + + N ++ ++L +E ++T+S +G+ K D+ R Sbjct: 504 REELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRR 563 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 GKG A + + + I L N +D I+ S +G L + V ++ ASR +G I Sbjct: 564 GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 620 Query: 883 FS---TAKDERVVSVERIRESEI 902 + +DER+ ++ +RE E Sbjct: 621 INLLPLEQDERITAILPVREYEE 643 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 57/426 (13%), Positives = 131/426 (30%), Gaps = 31/426 (7%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + H+L + + E + I+ N + Sbjct: 471 EHEKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADIN 530 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483 + + + + G L++ + + + D I L + + Sbjct: 531 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 590 Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 + + G + ++++ R T I+ Sbjct: 591 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVRE-------YEE 643 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 V + G VK+ PL + R G + DE DL + FS+ Sbjct: 644 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEAMLFSAD 701 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V + + A G + ++ ++ ++ T++G Sbjct: 702 GKVVRFAEECVRPMGRTATGVRGMKLVDDDK---------VVSLIIPRGEGDILTVTENG 752 Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R S++ NR+ + + + +++ + + I++ T G VR +S Sbjct: 753 YGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 812 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GRN+ GV I + + V+ + V D D+ + + + Sbjct: 813 V-SIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDALDDDEVDEMISDNISDVPESEPTDD 871 Query: 773 TSLKND 778 + + Sbjct: 872 ADSEEE 877 >gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] Length = 894 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 536/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33] gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33] Length = 894 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 377/869 (43%), Positives = 536/869 (61%), Gaps = 42/869 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849 R+ +G+ S+ ++V + +++ Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + H+L + + E + IR ARR + + + Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 D+++LI D Y LS+ + + ++ Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 + E L + ++ +L + P +R G + E + + Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634 Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 + G VK+ L + R G + +RDED + + I + Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692 Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632 ++ FS G V + K G P+ + K + + +G ++ Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689 V+ T++G +R LS++ R + + + ++ Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + ++ ++ T G VR ++ + GRN+ GV I ++G+ V+ + + + Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871 Query: 750 ERICYMKHMSAQRRLISGDTEEI 772 + D E+ Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894 >gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213] gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213] Length = 896 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 348/918 (37%), Positives = 515/918 (56%), Gaps = 97/918 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + E + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 27 ADTTDYGLMESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 86 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS Sbjct: 87 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPG 146 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 147 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 206 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV +G +++PD + L+ II+GPDFPTGA ILG GI Sbjct: 207 IAVGMATNIPPHNMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGI 266 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 267 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 325 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 326 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 385 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 386 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 445 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM+ + + +VQ AIL ++L LT + RD I E Sbjct: 446 LME--------------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAE 479 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + +DIL+ R II EL + + RRT+I+ +M ED I E Sbjct: 480 HEELQRKIADYIDILAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEE 539 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 540 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 599 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP GS ++G+ + N+L E I ++ P E Y+V AT+ G Sbjct: 600 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQAVLSIPNYEV---AKYLVLATRSGK 656 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C E+DI+L +KLG ++F Sbjct: 657 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 716 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GV+G+ +GD++++M +V Sbjct: 717 NDEQLRPM-GRQTAGVQGMKFREGDELLAMDVV--------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G GI+ Sbjct: 749 ------------------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 784 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + G+LV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 785 AVQLVEG--RGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 842 Query: 889 ERVVSVERIRESEIVDEA 906 + ++S+ R E + +E Sbjct: 843 DEILSIARNEEKDDPEEE 860 >gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] Length = 883 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 381/857 (44%), Positives = 534/857 (62%), Gaps = 21/857 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + SD + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV Sbjct: 59 NVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +A Sbjct: 179 GIAVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDA 238 Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG I IR + IE RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ L Sbjct: 239 YRTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGL 298 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G R+V+E+KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ Sbjct: 299 RDESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIA 358 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ R EVV RRT + L KARDRAH+L LA+A+AN+D V+ +IR +P P A+ L+ Sbjct: 359 AFIRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIA 418 Query: 420 RSWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGR 470 + W+ + +++ DS+ DG YL+E Q +AIL+LRL +LTGL Sbjct: 419 QPWDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 + + +E L ++I E L IL S RL+ +I++EL ++K + + PRRT I E D+ E Sbjct: 479 EKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIE 538 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I E++VVT+SH GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L Sbjct: 539 DLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 598 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FSS G +Y KV++LP S ARG+ +IN+L L Q ERIT I+P E E +V Sbjct: 599 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYE---EGKFVFM 655 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L DF + +G IA+ L+ DE++ V+ N+ +L + G+ VRF Sbjct: 656 ATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAE 715 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVRG+ L D+V+S+ I + Q + + Sbjct: 716 ECVRPM-GRTATGVRGMKLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKN-- 772 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 T V + + I+ ++ G RT + I R+ +G+ Sbjct: 773 RATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLI 832 Query: 831 DVSKINEIGALVAVFPV 847 ++ +V + V Sbjct: 833 RTTEDEL---VVGLQRV 846 Score = 79.1 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R + + + + N ++ ++L +E ++T+S +G+ K D+ R Sbjct: 510 REELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRR 569 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 GKG A + + + I L N +D I+ S +G L + V ++ ASR +G I Sbjct: 570 GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 626 Query: 883 FS---TAKDERVVSVERIRESEI 902 + +DER+ ++ +RE E Sbjct: 627 INLLPLEQDERITAILPVREYEE 649 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 57/426 (13%), Positives = 131/426 (30%), Gaps = 31/426 (7%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ + LL + + H+L + + E + I+ N + Sbjct: 477 EHEKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADIN 536 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483 + + + + G L++ + + + D I L + + Sbjct: 537 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 596 Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 + + G + ++++ R T I+ Sbjct: 597 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVRE-------YEE 649 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 V + G VK+ PL + R G + DE DL + FS+ Sbjct: 650 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEAMLFSAD 707 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V + + A G + ++ ++ ++ T++G Sbjct: 708 GKVVRFAEECVRPMGRTATGVRGMKLVDDDK---------VVSLIIPRGEGDILTVTENG 758 Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +R S++ NR+ + + + +++ + + I++ T G VR +S Sbjct: 759 YGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 818 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GRN+ GV I + + V+ + V D D+ + + + Sbjct: 819 V-SIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDALDDDEVDEMISDNISDVPESEPTDD 877 Query: 773 TSLKND 778 + + Sbjct: 878 ADSEEE 883 >gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] Length = 876 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC Sbjct: 42 RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221 Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV DG +D+PD + L+ + I+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + EVQ AIL ++L RL L R I +E L I+I + D Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+K Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L GE I ++ P + Y+V AT+ G V++ L ++ Sbjct: 615 SRDSKGQHVANLLQFAPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671 Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F +R GR Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD+++ M +V Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E+ Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857 Query: 901 EIVDEA-ESTE 910 + + E E Sbjct: 858 DDEENQLEEKE 868 >gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] Length = 827 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 364/912 (39%), Positives = 555/912 (60%), Gaps = 94/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI + Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIES 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEERLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SISYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV+GI LA+ D V+ ++ Sbjct: 686 RTTRGVKGIRLAENDFVVGAVVISDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R NR GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV+V V+D + +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809 Query: 898 RESEIVDEAEST 909 + E + E+T Sbjct: 810 PKEEEPENLENT 821 >gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304] gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304] Length = 898 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 341/918 (37%), Positives = 511/918 (55%), Gaps = 110/918 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC Sbjct: 20 RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKC 79 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR Sbjct: 80 SRVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 139 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP+HN Sbjct: 140 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHN 199 Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + E+ +G +++P+ + L+ II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 200 MREIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 259 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 260 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQR 318 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A V+LN LY++T LQ F NM+AL P +L ++ ++ + +VV Sbjct: 319 LVLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQLQVV 378 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YL +A +R H+L G A+ ++EV+ +IR SP+ E AR LM Sbjct: 379 ERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLM----------- 427 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + ++Q AIL ++L RL L R I +E L I++ D Sbjct: 428 ---------------DLLDVDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYND 472 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R I+ E+ + D+ RRT+I+ +M ED I E++VVTV+H GY+K Sbjct: 473 ILAKPDRQRKIVGDEMDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIK 532 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P G Sbjct: 533 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEG 592 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L L E+I ++ + ++ Y+V AT+ G +++ +L ++ Sbjct: 593 SRDSKGQHVANLLQLGPDEKIQQVLSIKDYQT---ASYLVLATRSGKIKKTRLDEYDSAR 649 Query: 670 RSGKIAMKLDSR----------------DEILSVETCTQENDILLTTKLGQCVRFPISA- 712 + G IA++L DE++ C +++I++ ++ G V+F Sbjct: 650 QGGLIAVRLREIEGAFRTDKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQ 709 Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+ + D ++SM +V Sbjct: 710 TLRPM-GRQTAGVQAMKFRGKPGDDLLLSMDVVPQG------------------------ 744 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + +L V+ +GF KRT+ ++R+ R+G G++ Sbjct: 745 ---------------------------TDSDLLVVTNEGFAKRTALSEYRLQGRNGYGVK 777 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ + G L+ V ++DQ++ + G +IR V+EI+ R T+GV + K Sbjct: 778 AINLVEG--RGNLIGAIVVAEDDQVMAIMKSGKVIRSDVSEIKRTGRNTQGVTLAKPDKG 835 Query: 889 ERVVSVERIRESEIVDEA 906 + ++SV R E+E DE Sbjct: 836 DEIISVARNAETEDQDEP 853 >gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] Length = 806 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 349/892 (39%), Positives = 546/892 (61%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++ Sbjct: 2 TERKLNIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA R Sbjct: 62 KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN Sbjct: 122 YTELRMAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + Sbjct: 182 MAPHNLGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIMGLEEVKNAYTTGRGKVK 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE++ R +I+VTEIPYQVNK+ +++KIA+LV++K++ I+DLRDESDR+G R Sbjct: 242 LRAEARIEESK-GRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE KR A+ +++LN LY+YT +Q+ F + +AL P+ TL ++ ++ +E VV Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + + Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK--------------- 405 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 406 -------------LMQRFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL +K + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ +D+ ++ +++F TK+G V++ L + I Sbjct: 573 SRTARGSNIINLIQIDADESVTQVLALDKDK--EDDQFIIFITKNGKVKKTSLDLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V + Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 F+ +SE G+GK+T ++ NR GKGIR ++K + G + + + Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900 D+I+L+S K +IR+ I SR+T GV++ +T K + +V+V + E Sbjct: 755 EDEILLISKKAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806 Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 27/244 (11%) Query: 676 MKLDSRDEILSVETCTQEN-----------DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 +K D+ + + + T G R A +V R GV Sbjct: 471 IKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV-QHRGGRGV 529 Query: 725 RGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + + GD + M ++ +K + I +L + Sbjct: 530 NAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDA 589 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINE 837 E + K +QFI+ +++ G K+TS + R + GI A + Sbjct: 590 DESVTQVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKT-----GIIAIKFDEG-- 642 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L+ V V N+ +I+V+ KG ++ V+++R SR GV + KD+ V+S + + Sbjct: 643 -DELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLV 701 Query: 898 RESE 901 +++E Sbjct: 702 KDNE 705 Score = 81.0 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 95/236 (40%), Gaps = 23/236 (9%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KG 732 +D+ DEI+ + + ++ + + RF S I+ + + + L + Sbjct: 385 IDNIDEIIHIIRTSYDDALEKLMQ-----RFGFSEIQ------AQAILDMRLKRLQGLEK 433 Query: 733 DQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 +++ + + E + + + + + S + + + + Sbjct: 434 EKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDM 493 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 EL +E +T++ KG+ KR S+ +++ +R G+G+ A + + I + A + Sbjct: 494 ELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTT---HQ 550 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904 ++ ++KG + + E+ ASR +G I + DE V V + + + D Sbjct: 551 DLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKEDD 606 >gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum] Length = 817 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 369/903 (40%), Positives = 540/903 (59%), Gaps = 93/903 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + S+ +EM+ SYL YA++VI+ RA+PD+RDGLKPV RR+L+ M ++G ++K Y Sbjct: 3 DQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKPYK 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+ +GKYHPHG+ +Y+A+ RM Q +S+R LI+GQGNFGSVDGD PAA RYTE Sbjct: 63 KSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL A LL D+ K+TVDFR NYDGS EPVVL AR+PNVLVNG GIAVGM+TNIP Sbjct: 123 VRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D + ++++P +D LM+ ++GPDFPT I GRTGI++AY TGRGS+ +R Sbjct: 183 HNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFICGRTGIRDAYLTGRGSVTLRA 242 Query: 253 VSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 + I+ K +R+ IVVTE+PYQVNKA++LEKIAELV EK+I IADLRDESDR+G Sbjct: 243 RAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDREGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A V+LN L++YT +QS + M+A+ +P+ L+ +L FV R EV Sbjct: 303 RVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGRPQVLNLVEMLNYFVEHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KA R H+L GL A+ L+ ++ +IR + + AR LM R Sbjct: 363 VRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS VQ +AILE++L RLT L R + E L + E Sbjct: 415 ------------------FALSRVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELR 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547 +IL ++L +I QEL V+ TPRRT+IV+ D ED I +E++V+T++ GY Sbjct: 457 EILDKEAKLREVIVQELQEVRKAYGTPRRTQIVDCESTDFTIEDLIPKEEVVITITREGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR P+S YR Q+RGG GR G+ + ED V L+I STH+ +L F++ G VYK +V +P Sbjct: 517 IKRTPVSAYRTQKRGGVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + RGKA++N++ L +GERI +P E + ++VFAT+ G +++ +LS++ Sbjct: 577 DAATSGRGKAIVNLIELPEGERIAGTIPVREFA---SGQFIVFATRRGIIKKTELSEYAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G +AM + DE+++V+ IL++T GQ + F S +R GR + G+ GI Sbjct: 634 IRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP-TGRMAQGIIGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V M++V + Sbjct: 693 RLRENDYVTGMSVVGRTED----------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL++SE G KRT ++ + +R G+G+ V++ G ++ PV Sbjct: 712 ------------ILSLSELGLSKRTPITEYPVHHRGGQGVATMYVTER--TGGVIKTLPV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +++D+ ++++ +G + R+ V+++R R +GV + + A+ +RVV + E+ E Sbjct: 758 HEDDEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDRVVDACLV---ELSAEEP 814 Query: 908 STE 910 TE Sbjct: 815 VTE 817 >gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695] gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695] Length = 827 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 362/911 (39%), Positives = 551/911 (60%), Gaps = 93/911 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++ ++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F G A+ LD DE++S + + +L+ + LG ++FP+ +R GR Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREI-GR 685 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV GI L + D V+ ++ Sbjct: 686 TTRGVIGIKLNENDFVVGAVVISDDGNK-------------------------------- 713 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKG+ +++ + G Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQ--KTG 751 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV V V+D + +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809 Query: 899 ESEIVDEAEST 909 + E + E++ Sbjct: 810 KEEEPENLETS 820 >gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27] gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27] Length = 833 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 362/913 (39%), Positives = 553/913 (60%), Gaps = 91/913 (9%) Query: 1 MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M ++ + + E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ Sbjct: 1 MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS Sbjct: 61 MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMAT+IP H + E++D V++NP+ LD ++E ++GPDFPTG +I G+ GI Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIVE 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++ Sbjct: 241 AYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLR 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+ Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LSE+Q++AILE+RL RLTGL RD I+ E + Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I + IL S RL G++K ELL VK++ +PR T I E +++ ED I E MV Sbjct: 454 LLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 514 VSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKR 630 Query: 660 NKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R Sbjct: 631 TNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREI- 689 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GV+GI LA+ D V+ ++ Sbjct: 690 GRTTRGVKGIRLAENDFVVGAVVISDDGNK------------------------------ 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 720 ----------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQ--K 755 Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LV+V V+D + +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 756 TGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNS 813 Query: 897 IRESEIVDEAEST 909 + E + E++ Sbjct: 814 CPKEEEPENLETS 826 >gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60] Length = 878 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 382/850 (44%), Positives = 540/850 (63%), Gaps = 22/850 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYTQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H + + + + + E N Sbjct: 723 GIKLAGEDRVVSL-IVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNG 781 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843 S +++ +Q I+ +++ G RT + I R+ +G+ ++ +V Sbjct: 782 SVVGAVQVEDCDQ-IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDE---HVVGLQ 837 Query: 844 --VFPVNDND 851 V PV+D D Sbjct: 838 RVVEPVDDED 847 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 66/412 (16%), Positives = 144/412 (34%), Gaps = 38/412 (9%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428 + LL++ + + L + + + ++ +IR ARR + + +I+ Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIE 531 Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483 DLI+ D Y LS+ + + + D I L + + Sbjct: 532 DLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591 Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + + G + ++++ R T I+ E + Sbjct: 592 CFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN------ 645 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VK+ L+ + R G + DE DL + V+ FS+ G Sbjct: 646 -VFMATASGTVKKTALTEFSRPRAAGIIAVNLNYGDELIGVDL--TDGNDEVMLFSAAGK 702 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K + A G + + L +R+ +++ ++ T++G Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGEDRVVSLI------VPHGEGAILTVTQNGYG 753 Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ ++++ +R+ + + + ++ + I++ T G VR +S + Sbjct: 754 KRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTLVRTRVSEV- 812 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GRN+ GV I A+ + V+ + V+ D D ++ Sbjct: 813 SIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864 >gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 860 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 352/919 (38%), Positives = 510/919 (55%), Gaps = 95/919 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ E+ I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ Sbjct: 61 YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 PAA RYTEC++ A ++ D+ +++VDF+ NYDG QEP +L AR+PN+LVNG Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV G +++PD + L+ E I GPDFPTGA ILGR G Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATILGRRG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR+ ++ I Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL P +L Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G ++ +V + +V+VRR+++ L KA++R H+L G A+ LD V+ +IR S + AR Sbjct: 360 GFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEARG 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM G + + EVQ AIL L+L RL L R I+ Sbjct: 420 GLM--------------------------GLLGVDEVQADAILALQLRRLAALERLKIQQ 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++ + DI++S R GI+ EL + ++ RRTRIV +M ED I Sbjct: 454 EAEELQAKVADLKDIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPE 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH +LFF++L Sbjct: 514 EEVVVTITRSGYAKRTRTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNL 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G A+G+ + N+L+ GE I +M + E ++V ATK G Sbjct: 574 GRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEEIAQVMELKDYE---QADFLVLATKRG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ +LS++ G IA+ L DE++S ++ D+LL ++ GQ RF Sbjct: 631 LVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHA 690 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S +R GR + GV G+ GD +++M +V D D Sbjct: 691 SDDVLRP-TGRATSGVTGMRFRDGDWLLAMDVVDPQWTDAD------------------- 730 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + V+E G+ KRT+ ++ R G G++ Sbjct: 731 -------------------------------LFVVTEGGYAKRTNVAEYPTKGRGGLGVK 759 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++ + E G LV +D+++ + + G ++R V+E+ + R T+GV Sbjct: 760 VANLVE--ERGDLVGALVTAPSDEVLCIMESGKVVRSRVDEVSVTGRNTQGVTFAKPDDG 817 Query: 889 ERVVSVERIRESEIVDEAE 907 +R+++V R E E+ + E Sbjct: 818 DRIIAVARNTERELDGDDE 836 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 13/248 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589 + D +V + G VK+ LS Y + R GG + + +L + Sbjct: 617 YEQADFLVLATKRGLVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDL 676 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L S G + + P R + + + G+ ++ + W + + Sbjct: 677 LLVSRHGQSARFHASD-DVLRPTGRATSGVTGMRFRDGD---WLLAMDVVDPQWTDADLF 732 Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDS--RDEILSVETCTQENDILLTTKLGQC 705 T+ G +R ++++ R G L D ++ +++L + G+ Sbjct: 733 VVTEGGYAKRTNVAEYPTKGRGGLGVKVANLVEERGD-LVGALVTAPSDEVLCIMESGKV 791 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR + + GRN+ GV GD++I++A + D D+ + + Sbjct: 792 VRSRVDEV-SVTGRNTQGVTFAKPDDGDRIIAVARNTERELDGDDEPAAPADQAQDAVAL 850 Query: 766 SGDTEEIT 773 S D E Sbjct: 851 SEDDESED 858 >gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] Length = 993 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 374/970 (38%), Positives = 539/970 (55%), Gaps = 81/970 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K H LL DL KDTV++ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMRKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A ++P I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+VI+N L++ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423 Query: 433 LID------------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 D S G DG LS Q AI+ELRL RLTGL +D + E + Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +I++EL + + R+T IVE +D ED I E MV Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDARKTSIVESRIDFSREDLIPEEQMV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y AQRRGG+G+S M+++D++ L + S+H +VL F+++G VY Sbjct: 544 LTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P S A+G+ ++N+L L++ E IT I+P + + F V+ Sbjct: 604 RLKVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKERLAAF---KAFVKA 660 Query: 660 NKLSDFIQINRSGKIA---------------------MKLDS---------------RDE 683 N + A ++L D Sbjct: 661 NAAQLQANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDDIINDF 720 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI--- 740 E + + + T+ G R + F+ S G+R I L D +I +AI Sbjct: 721 AQQAEAVRKNFYVFMATEYGTIKRV---ELEQFSNVRSNGLRAIELNGDDTLIGVAITDG 777 Query: 741 --------------------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 V + A +L D EI S D S Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGS 837 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 IS + + +L SE G+GKRT DF R GKG+ A S+ N G Sbjct: 838 DSALISRIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GQ 895 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV ++ + +++L+SD GTL+R +E+ R +GV + +E +V V I Sbjct: 896 LVGAVAIDASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAV 955 Query: 901 EIVDEAESTE 910 E + E+ E Sbjct: 956 EEDEFVEAIE 965 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G +KRV L + R G + + +D + + I ++ FS+ G Sbjct: 732 YVFMATEYGTIKRVELEQFSNVRSNG--LRAIELNGDDTLIGVAITDGEQQIMLFSNEGK 789 Query: 598 VYKEKVWRLPIGSPQARGKALINIL-----------------SLNQGERITTIMPFPEDE 640 + + A+G + + G I Sbjct: 790 AIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGSDSALISRIVSLV 849 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDIL 697 V+ A+++G +R + DF R G IA+K +++ +++ Sbjct: 850 VVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVGAVAIDASKELM 909 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 L + G VR S + GRN+ GVR I L + ++ + + + D Sbjct: 910 LISDGGTLVRTRASEV-AQTGRNAQGVRLIRLGNEELLVGVVSIEAVEEDEFVEAIEGAE 968 Query: 758 MSAQRRLISGDTEEITSLKNDSSVE 782 ++ +TE++ +S E Sbjct: 969 SLVAETDVAAETEQVAKDGENSVEE 993 >gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293] gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293] Length = 818 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 362/899 (40%), Positives = 523/899 (58%), Gaps = 86/899 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + + +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ ++ Sbjct: 2 EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KC RI G+V+GKYHPHG+ +IYDAL R+AQD+S+R ++ QGNFGSVDGDPPAA R Sbjct: 62 AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ + A +L D+ K+TVD+ PNYD S QEP+VL +P +L NG GIAVGMATN Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV VA I++ +I +D LM+ I+GPDFPTG +I GR GIK A+ TG+G I Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKIT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE T +++I+VTEIPY VNKA ++ KIA+LV+EKRI I+DLRDESDR G R Sbjct: 242 VRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG V+LNQL+ +T+LQ F+V +AL P++ L ++ FV R EVV Sbjct: 302 IVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +RAH+L GL IA+ N+DEVV+II+ S + AR LM+R Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL +LT L I EL + I D Sbjct: 413 -----------------FKLSERQSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKD 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +LSS ++LG+++ E + + R+T IV + + ++ ED I +EDMVV VS+ G++ Sbjct: 456 LLSSEQKILGVVRDETEEIAQKYGDDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP+S YR Q RGGKG S + +EDF+ LFI STH +LF ++ G Y KV +P Sbjct: 516 KRVPVSSYRNQGRGGKGSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS +RG + +L ++ E ITTI+ E Y+ AT G V++ K SDF Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFS---EEHYLFMATARGIVKKVKTSDFRNA 632 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA+KLD+ D +++ +++I++ ++ G +RF +R GR S GV GI Sbjct: 633 RTRGIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQVRAM-GRASRGVTGIR 691 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D++ + V + Sbjct: 692 LQSDDELAGILRVEDNEK------------------------------------------ 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L +SE G GKR F + R +G A S+ + G +V V V Sbjct: 710 -----------MLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERS--GEIVGVLSVL 756 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + D ++ ++ +G I++ V+++ + + +GV I + + VV V R+ + +E + Sbjct: 757 EEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARVMNDKDEEEDQ 815 >gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] Length = 876 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 352/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC Sbjct: 42 RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221 Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV DG +D+PD + L+ + I+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + EVQ AIL ++L RL L R I +E L I+I + D Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+K Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L GE I ++ P + Y+V AT+ G V++ L ++ Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671 Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F +R GR Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ +GD+++ M +V Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V + DQ++ + G +IR +NE++ R T+GV + K + ++S+ R E+ Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857 Query: 901 EIVDEA-ESTE 910 + + E E Sbjct: 858 DDEENQLEEKE 868 >gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] Length = 879 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 349/910 (38%), Positives = 511/910 (56%), Gaps = 98/910 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC Sbjct: 42 RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221 Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV DG +D+PD L+ + I+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + EV+ Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVI 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+YL +A +R H+L G A+ +DEVV +IR S + +TAR LM Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------- 449 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + +VQ AIL ++L RL L R I +E L +I++ D Sbjct: 450 ---------------NLLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYND 494 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R I+ EL + + RRTRI+ +M ED I E++VVTV+ GY+K Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEG 614 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L GE I ++ P + Y+V AT+ G V++ L ++ Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671 Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 + G IA++L + DE++ C E+DI+L +KLG ++F +R GR Sbjct: 672 QGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ + D+++ M +V Sbjct: 731 TAGVQGMRFREDDELLDMDVVS-------------------------------------- 752 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +L V+ +GF KRT+ ++R+ R+G G++A +++ G+ Sbjct: 753 -------------VETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEER 857 Query: 901 EIVDEAESTE 910 + + ++ E Sbjct: 858 DDESDNKNEE 867 >gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614] gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614] Length = 922 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 349/926 (37%), Positives = 512/926 (55%), Gaps = 70/926 (7%) Query: 1 MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 MTE I V + MQ +Y+ YA+ VI+GRA+PD+RDGLKPVH Sbjct: 1 MTETPTDGGSTPPSDGGGPGGRIEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G ++ + KC+R+ G+VMG+YHPHG+ AIYD L R+AQ W +R LI G Sbjct: 61 RRVLYAMYDGGYRPDRGFSKCSRVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS D AA RYTECR+ A ++ D+ +DTVDF+PNYDG QEPVVL AR+PN Sbjct: 121 QGNFGSPGNDSAAAMRYTECRMAPLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV +G +++PD + L+E I+GPDFP GA Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAEGARWALEHPDATREELQDALIERIKGPDFPNGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 +I+GR GI+ AY TGRGSI R V +++ + R +V+TE+PY VN + KIAEL Sbjct: 241 LIVGRQGIEQAYRTGRGSITQRAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELAD 300 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 ++ I+D+RD+ SDR G R+V+ LKR A A V+LN L ++T LQ+ FS NM+AL Sbjct: 301 SGKVQGISDVRDDTSDRTGQRLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGV 360 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P + + +V + +V+ RRT+Y L +A RAHVL GL A+ LDEV+ +IR SP Sbjct: 361 PRTLAIDQFISNWVTHQIDVIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSP 420 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 + AR L+ + + EVQ AIL+++L +L L Sbjct: 421 DVAEAREGLIA--------------------------LLDIDEVQATAILDMQLRQLAAL 454 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I ++L + I + DIL++ +R I+ EL + + RR++I+ D+ Sbjct: 455 QRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYGDDRRSQIIAADGDLS 514 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I E++VV+++ GY KR YR QRRGGKG G +R +D V + H Sbjct: 515 MEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKGVRGATLRGDDVVEHFIATTNHHW 574 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP S A+G + +LS E I ++ + + Y+ Sbjct: 575 LLFFTTAGRVYRTKAYNLPEASRDAKGGHVAGLLSFQPDENIAQVLAIRDYD---QAPYL 631 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707 V AT+ G V++ +L D+ ++G IA+ DE++ E E+ ILL ++ GQ VR Sbjct: 632 VLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVR 691 Query: 708 FPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 F +R GR + GV G+ GD ++SM+++ Sbjct: 692 FQADDSQLRPM-GRATGGVTGMKFRDGDSLLSMSVIR----------------------- 727 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + E + + ++E R Q L Q++ T+++ GF KRT ++R+ +R G Sbjct: 728 AAQVEAEEAAEASGESVEEMAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGI 787 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE-IRIASRATKGVVIFS 884 GIRA ++ + G LV F V D D+I+ ++ G ++R P++E R R+T GV + Sbjct: 788 GIRAMKLANEDR-GELVGAFIVEDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVT 846 Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910 K + V V R E+ DE + + Sbjct: 847 PKKGDSVAVVARSVEANGDDELDELD 872 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 37/293 (12%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ L Y + R+ G D++ + V+ +L S G Sbjct: 629 PYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGAEL-VNPEDHILLVSRKG 687 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------ 644 + + + P R + + G+ + ++ + Sbjct: 688 QSVRFQADDSQL-RPMGRATGGVTGMKFRDGDSLLSMSVIRAAQVEAEEAAEASGESVEE 746 Query: 645 ------------NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRD--EILSVE 688 YV T G +R ++ ++ +R G AMKL + D E++ Sbjct: 747 MAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLANEDRGELVGAF 806 Query: 689 TCTQENDILLTTKLGQCVRFPISA-IRVFAGRNSVGVRGISLAKGDQ--VISMAIVLHAD 745 ++IL T GQ VR PI R GR+++GV+ ++ KGD V++ ++ + D Sbjct: 807 IVEDGDEILSITSGGQVVRSPIDENFRP-TGRSTMGVKFVTPKKGDSVAVVARSVEANGD 865 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + DE + + G+ +E D++++G+ + + + E Sbjct: 866 DELDELD---ESALDEGGAEGGEVDESADAGTDATIDGSAASDVARTEGDTEP 915 >gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198] gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198] Length = 816 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 370/888 (41%), Positives = 532/888 (59%), Gaps = 91/888 (10%) Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85 + SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++GV Y K ARI G+V+GKY Sbjct: 17 KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76 Query: 86 HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145 HPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE RL KA+ +L D Sbjct: 77 HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136 Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205 L KDTVDF PNYD + +EP VL R PN+LVNG GIAVGMAT+IP H + E++D + + Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196 Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265 I + D + L+E ++GPDFPTG +I G+ GI++AY TGRG I +R HIEKT R+ Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIFGKQGIRDAYRTGRGRIKVRAKVHIEKTKT-RDV 255 Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325 IV+ E+P+QVNKA ++E+I+EL R+K I IA++RDESDR G RVVIELKR A ++++LN Sbjct: 256 IVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVLN 315 Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385 LY+ + +++ F + ++A+N +P+ FTL +L F+ R+ VV+RRT + L KA+ RAH Sbjct: 316 HLYKSSVMETTFGIILLAINNKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKARAH 375 Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 +L GL IA+ ++DEV+ +IR S + E A+ LM+R Sbjct: 376 ILEGLKIALDHIDEVIALIRSSQDVEIAKNALMER------------------------- 410 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 LSE+Q++AILE+RL RLTGL RD I E SL EI+ IL S +L II EL Sbjct: 411 -FGLSELQSKAILEMRLQRLTGLERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNEL 469 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 L +K++ +PR T I E ++ ED I E +VVT+SH GYVKRV L VY Q RGGKG Sbjct: 470 LEIKEKFSSPRCTIIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKG 529 Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625 + D+DF+ F+ +TH ++LF ++ G +Y KV+++P A GKA++N++ L+ Sbjct: 530 KISGNTHDDDFIQSFFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLS 589 Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685 E+I + + ++ +VF TK+G V+R LS++ I G A+ LD+ DE++ Sbjct: 590 SDEKIMATITTSDF---HDDKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELV 646 Query: 686 SVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLH 743 + TQ+ ++ + T G C+RF I+ +R GR + GV I K D VI + Sbjct: 647 TASIITQDVKELFVATYQGMCIRFDINDVREI-GRAARGVTAIRFKAKEDSVIGATTIRS 705 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + +LTV Sbjct: 706 ----------------------------------------------------ENDKLLTV 713 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862 SE+G GK+T + +R+ +R GKG+ ++ + G LV++ VND + +++++ G + Sbjct: 714 SEQGIGKQTLAGAYRLQSRGGKGVIVMKLTA--KTGKLVSIINVNDENMDLMVLTTSGKM 771 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IRV IR A R T GV I + A E+V + E E E E Sbjct: 772 IRVDTEAIREAGRNTSGVKIVNVA-GEKVAYASSCPKEE--KEPEDGE 816 >gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565] gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565] Length = 915 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 378/885 (42%), Positives = 539/885 (60%), Gaps = 56/885 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+V+GC+A+I+N D+ +D LM I GPDFPTG +I GR+GI AY TGRGSI +R + Sbjct: 187 LTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG S +++LN LY++T +Q+ F +NMVAL+ +P+ L IL AF+ R EVV RRT Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ L+ + W ++ +++ Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLEK 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G +L+E Q +AIL+LRL +LTGL + I E SL I Sbjct: 427 AGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S +RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+SH Sbjct: 487 ELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L +GERIT I+P E + YV FAT +G V++ LSDF Sbjct: 607 LPEASRGARGRPIINLLPLEEGERITAILPVKEYD---AEKYVFFATANGTVKKTSLSDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + SG A+ L DE++ V+ N+I+L + G+ VRF + Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDVET 723 Query: 713 -------------------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 +R GR + GVRGI L GD+V+S+ + A Sbjct: 724 DDDAGNDDDGSDNGEGTESKGTFKGVRPM-GRTAAGVRGIKLGAGDKVVSLIVPRGEGAI 782 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 +A + + + Q + I+ ++ G Sbjct: 783 LTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQ--IMLITNGG 840 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 RT + + R+ G+R + +V + + ++D+ Sbjct: 841 TLVRTRVAEVSVIGRNTGGVRLIRTGEDET---VVGLQRIAESDE 882 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704 ++ AT++G +R L+++ +R + + + + +++ + I+L T G Sbjct: 782 ILTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGT 841 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR ++ + GRN+ GVR I + + V+ + + +D D ++ + +S Sbjct: 842 LVRTRVAEV-SVIGRNTGGVRLIRTGEDETVVGLQRIAESDEDENDALAVDGEVSEGTDT 900 Query: 765 ISGDTEEITSLKNDS 779 +G D Sbjct: 901 ATGTDAVDAGEAGDE 915 >gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24] Length = 828 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 552/912 (60%), Gaps = 94/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++ + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVMGIRLNENDFVVGAVVISDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV+V V+D + +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809 Query: 898 RESEIVDEAEST 909 + E + E++ Sbjct: 810 PKEEEPENLETS 821 >gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8] gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8] Length = 826 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 552/912 (60%), Gaps = 94/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D + V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL G++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++ + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGGNRSYSGIRAIVLDKGDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRGI L + D V+ ++ Sbjct: 686 RTTRGVRGIKLNENDFVVGAVVISDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV V V+D + +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 752 GNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809 Query: 898 RESEIVDEAEST 909 + E + E++ Sbjct: 810 PKEEEPENLENS 821 >gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1] gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1] Length = 857 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 359/922 (38%), Positives = 521/922 (56%), Gaps = 116/922 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KC Sbjct: 3 RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC+ Sbjct: 63 ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L A +L D+ ++TVDF NYDG QEP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 123 LMPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPQ- 181 Query: 195 LGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 V G +++PD + L+E I+GPDFP+GA+++GR GI+ AY TGRGSI + Sbjct: 182 ---VAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVVGRKGIEEAYRTGRGSITM 238 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R Sbjct: 239 RAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 297 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+ Sbjct: 298 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 357 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTK+ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 358 VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM----------- 406 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G + + E+Q AILE++L RL L R I E + L +I E + Sbjct: 407 ---------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNE 451 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S SR I+ +EL ++ ++ RR+++V DM ED I ED+VVT++H GYVK Sbjct: 452 ILRSESRQRSIVSEELAAIVEKFGDDRRSKLVPFDGDMSMEDLIAEEDIVVTITHGGYVK 511 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 512 RTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDA 571 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG+ + N+L+ E+I I+ + E Y++ ATK G V++ L D+ Sbjct: 572 GRDARGQHVANLLAFQPDEKIAQILAIRDYE---AAPYLILATKGGLVKKTALKDYDSPR 628 Query: 670 RSGKIAMKLDS---------RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718 G IA+ L DE++ E + E+D+LL +K Q +RF + +R G Sbjct: 629 SGGVIAINLRETGADGADGAADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPM-G 687 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV+G+S +GD+++SM++V Sbjct: 688 RATSGVKGMSFREGDELLSMSVVRPGT--------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 F+ T ++ G+ KRT ++R+ R G GI+A + + + Sbjct: 715 --------------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DR 752 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-- 896 G+LV V++ D+I+ ++ G +IR VNE+R R T GV + + K + VV + R Sbjct: 753 GSLVGALVVDETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNA 812 Query: 897 --------IRESEIVDEAESTE 910 + E++I + E+TE Sbjct: 813 EAGQDADEVDENDIDIDTETTE 834 >gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus H10] Length = 809 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 352/877 (40%), Positives = 524/877 (59%), Gaps = 86/877 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K+Y K ARI GEVMGK Sbjct: 2 MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PAA RYTE R+ K A +L Sbjct: 62 FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVGM TNIP HNL EV+ G Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NPD LM++I GPDFPTG +I+GR GI AY +G+G+IV+R ++IE RE Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGRE 241 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ G R+ I+++R ASA V+L Sbjct: 242 RIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVVL 301 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N L++ T +Q+ F +NMVA+ P TL +L+ ++ +++VV RRTK+ L KA RA Sbjct: 302 NNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEARA 361 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 362 HILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR------------------------ 397 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 L + Q++AIL++RL RLTGL RD + E L +I + DIL+ R+ II E Sbjct: 398 --FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDE 455 Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 LL ++ RRT I ++ +EDED I ++++++TV+H GY+KR+P+ ++ Q RGG Sbjct: 456 LLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGG 515 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG G+ ++D DF+ L STH +LFF++ G VY K + +P A+G ++N+L Sbjct: 516 KGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQ 575 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L +GE++ T++ PE ++ Y+ F TK G V+R +S+F I SG IA+ L DE Sbjct: 576 LEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + +V T + +IL+ T LG V F + +R GR + GVRGI+L D V+ ++ Sbjct: 633 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGVRGINLRDHDYVVGSGVLD- 690 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + +L + Sbjct: 691 ----------------------------------------------------ADDQVLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SEKG+GK T + ++ + R GKGI+ ++++ N G L V ++ I++++ G +I Sbjct: 699 SEKGYGKHTPAAEYSVKGRGGKGIKTANITEKN--GPLAGVIVISKGKDIMVITTDGIMI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 R ++ R+T GV + D +V S+ + Sbjct: 757 RFKTKDVSQTGRSTMGVRLIKVNDDSQVASLTIVPSE 793 >gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 812 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 347/903 (38%), Positives = 546/903 (60%), Gaps = 92/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E +I I V + +M+ Y+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSEELID----IHGKIEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ +K + K A + G M YHPHG+++IYDA+ RMAQ++S+R +L+EG+GNFG++ Sbjct: 57 HELGLTPDKSFHKSANVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTL 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE ++ K + +L DLGKDTV+FRPN+D QEP VL +R+PN+LVNG Sbjct: 117 DGDPPAAYRYTEAKMNKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGEV+D V +IDNPD LD +M I+GPDFPTGA+I+GR IK A Sbjct: 177 GIAVGMATSIPPHNLGEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIMGREAIKKA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I++R + IE+ + +I+VTEIPYQVNKA ++EKI +LVR+K+I + DLR Sbjct: 237 YETGRGKIIVRAKTEIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLR 296 Query: 301 DESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DES ++ G ++VIE +R + +V+LN L++++SLQ ++SV ++++ +P+ L+ IL+ Sbjct: 297 DESSKKTGIKIVIETRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGEPKILNLVDILQ 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ +++EVV RRTK+ LNKA +R H++ GL IA+ N+DEV+ IIR + + + Sbjct: 357 YYLKYQKEVVTRRTKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQK----- 411 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 LSEVQ AIL++RL RL GL ++ +++E Sbjct: 412 -----------------------LMDRFSLSEVQATAILDMRLRRLQGLEKEKLQDEERE 448 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 LG +I IL S +LL IIK+E++ ++D+ RRT+I +++ +D I E++ Sbjct: 449 LGEKIAYFNSILESEEKLLSIIKEEIIEIRDKYKDVRRTQITSMPHEIDIKDTIPNEEVT 508 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++H GY+KR+P+ Y+AQ+RGGKG S + ++EDFV L I S H +LF ++ G +Y Sbjct: 509 ITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIY 568 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +P S A+G +IN+L L + E+I TI+ E+E +N Y+V TK G +++ Sbjct: 569 NLNAYEIPQTSRTAKGSNIINLLPLEKDEKIATIITTRENE---DNAYIVMCTKKGIIKK 625 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++S+F + R G A+ L DE+++ ++ L TK G + F + +R GR Sbjct: 626 TRISEFTKSKRQGMKAINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENTLRPM-GR 684 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV + L K Sbjct: 685 TATGVIAMRLKKD----------------------------------------------- 697 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E E+ ++ +L +SE G+GKRT +++ +R+G G++ +++ + G Sbjct: 698 ------DEIVSLEIASNDKQVLIISENGYGKRTQVSKYKVQSRAGVGVKTYKITE--KTG 749 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + V ++D++++++ GTLIR PV EI + SR T GV + + +++ + ++E I+ Sbjct: 750 NIADAKIVEESDEVMIINSDGTLIRTPVAEISLLSRDTSGVKVMRSGENDIISAIEIIQS 809 Query: 900 SEI 902 E Sbjct: 810 EEE 812 >gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 809 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 350/891 (39%), Positives = 555/891 (62%), Gaps = 86/891 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E E GI V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ + Sbjct: 1 MTDTKEFENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K AR+ G+VMGKYHPHG+++IY+A R+AQD+++R L++GQGNFG++DGD Sbjct: 61 VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K A +L D+ KDTV+F PN+D +EP +L +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HN+ EV+DG V ID+ DI + L E+I+GPDFPTGA+I+GR GI AY TGR Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R V+ I + REQI++TE+PYQVNK+A++ KIAEL ++K I I+ + D S++ Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+LK+ A+A+V+LN+LY+ T LQ + + +AL +P+ L +++ +V + Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+ RRT++ LNKA RAH++ GL IA+ N+D V++IIR S + + + Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKF-------- 412 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D L+++Q++AIL++RL RLTGL R+ ++NE + L +IK Sbjct: 413 ------------------DREFSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL + L+ +IK ELL +KD+ RRT I D++ ED I ED+++T++ Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQF 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P Y+ Q+RGG+G + + +++DFV +LF+ STH +LFF++ G VY+ K + Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G A++N+L+L++GE+IT+++ E + + Y++ T+ G +++ +F Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFD---PDHYLLMVTEKGLIKKTSNKEF 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G I +KL D+++SV + +I+L TK G+ +RF +R GRN++GV+ Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D ++S IV Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++LTVSE GFGK T ++R NR GKGI +S+ + G + A Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 VN +D I+L++D G +IR+ +++I + SR T GV + + D ++V++ + Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKIVAIAK 805 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 61/267 (22%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 ++ ++ T+ G ++R + R G A+ D + + + Sbjct: 496 IDIEDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTH 555 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L T G+ R + AGRN+ G V ++L KG+++ S+ V Sbjct: 556 DRLLFFTNKGKVYRLKAFEV-PEAGRNAKGTAVVNLLNLDKGEKITSVINV--------- 605 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 E + ++L V+EKG K Sbjct: 606 -----------------------------------------EEFDPDHYLLMVTEKGLIK 624 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 +TS+ +F N G+ + ++ L++V V +++IILV+ +G IR +E+ Sbjct: 625 KTSNKEF--KNIRQNGLIGIKLRDDDK---LISVHLVRGDEEIILVTKEGKSIRFSTDEL 679 Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897 R R T GV + +D+ +VS + + Sbjct: 680 RDQGRNTMGVKSMNLDEDDTIVSSDIV 706 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L + E + + + + ++ + ++ + S+ +++ +E I Sbjct: 449 LLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVI 508 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+++ G+ KR ++ R G+GI A + + + L F + +D+++ ++KG Sbjct: 509 ITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKEL---FVTSTHDRLLFFTNKG 565 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + R+ E+ A R KG V + + K E++ SV + E + Sbjct: 566 KVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPD 611 >gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] Length = 808 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 355/837 (42%), Positives = 512/837 (61%), Gaps = 35/837 (4%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ ++ + K Sbjct: 7 KVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I GEV+ KYHPHG+ A+YDAL R+AQD++ R L++G GNFGSVDGD AA RYTE R Sbjct: 67 AYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEAR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + +L D+ K+TV+F PNYDG EP VL AR PN+L+NG GIAVGMATNIP HN Sbjct: 127 MARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG + +IDNPD ++ LM +I+GPDFPTG I+GR GI +AY TGRGSI +R + Sbjct: 187 LGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSIKVRAQA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G R IVV+EIPYQVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIEL Sbjct: 247 SIEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R A+ V+LNQLY++T +Q F V M+AL +P L +L ++ +++VVVRRT+ Sbjct: 307 RRDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQKDVVVRRTR 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LN+A RAH++ GL IA+A+LDEV++ IR S PE AR+ LM++ Sbjct: 367 FELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEK-------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q AI+E+RL +LTGL R+ + E L +I +L Sbjct: 413 ------------FGLTEKQAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++LGIIK ELL+VK + PRRT I E+ED I ED+V+T++ GY+KR+PL Sbjct: 461 RKVLGIIKDELLAVKKKFADPRRTAITSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLD 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGG+G + + ++EDFV LFI +TH LFF++ G VY+ KV +P QA+ Sbjct: 521 TYRSQRRGGRGVTAMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAK 580 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N+L + E+ITT++P E + Y+ ATK G V++ L+++ R G I Sbjct: 581 GTAIVNLLYIGSEEKITTVIPVREFD---PAQYLFMATKRGIVKKTPLNEYDTSRRDGII 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L+ D ++ V+ +I+L T+ G +RF +R GR + GV+GI+L D+ Sbjct: 638 AISLNEGDHLVDVKLTGGREEIILATRGGLAIRFLEEEVRP-TGRVTQGVKGINLVGDDE 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M + + + R + + Sbjct: 697 VVGMEVARPDEFLLSVTANGFGKRT--RLSEYRAQARGGKGIINIKTTARNGPLVAIQAV 754 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ ++ +S +G R + D + R+ +G+ + + +LVA V + Sbjct: 755 KGEEEVMMISAEGIIIRLKAQDIPVMGRATQGVTLMRL---DRGDSLVAAAKVETEE 808 Score = 39.8 bits (91), Expect = 2.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 25/46 (54%) Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + + D +I ++ +G + R+P++ R R +GV T +++ V Sbjct: 498 LIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMGTKEEDFV 543 >gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99] gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99] Length = 828 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 361/912 (39%), Positives = 551/912 (60%), Gaps = 94/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V+ NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ L++R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++ + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVMGIRLNENDFVVGAVVISDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV+V V+D + +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 752 GNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809 Query: 898 RESEIVDEAEST 909 + E + E++ Sbjct: 810 PKEEEPENLETS 821 >gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] Length = 822 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 356/846 (42%), Positives = 520/846 (61%), Gaps = 35/846 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +E+ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G ++N+L +++GE + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L DQV+ M IV + + Y K + + N + G + Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKL 751 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + E+ I+ ++ G R R+ +G+R + E+ + Sbjct: 752 VAVKSV---TGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQ 808 Query: 846 PVNDND 851 + D Sbjct: 809 KDEEED 814 >gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC 49725] gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC 49725] Length = 851 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 338/915 (36%), Positives = 524/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +++ I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC+L A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ +++NP D L A ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE++ R+ IV+TE+P+QVN ++ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L +VA + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L + + + ++Q AIL ++L RL L R I + Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + IL+ R I+ EL ++ ++ RRT I+ ++ DED I R Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ E + Y+V AT+ G Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M++V + Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLAMSVVHDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT+ ++ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ ++ +D+I ++ G +IR VN+IR +SRAT GV + A D +++ Sbjct: 753 P--KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E + ++A++ Sbjct: 811 IDRNVEEDGEEDAQA 825 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 13/251 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + + + D + +VS +L Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + P R A + + +++ + + +++ Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVV------HDGEFLLV 721 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R G M R +++ + ++++I T G +R Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIR 781 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ IR + R ++GVR + LA +++++ + D + D + + Sbjct: 782 TEVNQIRP-SSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840 Query: 768 DTEEITSLKND 778 S + Sbjct: 841 HKGSDASKDEE 851 >gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium accolens ATCC 49726] gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium accolens ATCC 49726] Length = 851 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 338/915 (36%), Positives = 524/915 (57%), Gaps = 97/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +++ I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS Sbjct: 57 FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC+L A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG G Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ +++NP D L A ME ++GPDFPT +I+G G Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE++ R+ IV+TE+P+QVN ++ IAE V +I I Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L +VA + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L + + + ++Q AIL ++L RL L R I + Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + IL+ R I+ EL ++ ++ RRT I+ ++ DED I R Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ E + Y+V AT+ G Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF + Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ DQ+++M++V + Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLAMSVVHDGE---------------------------- 717 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L + G+GKRT+ ++ R G G+ + Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G L+ ++ +D+I ++ G +IR VN+IR +SRAT GV + A D +++ Sbjct: 753 P--KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLA 810 Query: 894 VERIRESEIVDEAES 908 ++R E + ++A++ Sbjct: 811 IDRNVEEDGEEDAQA 825 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 13/251 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R G + + + D + +VS +L Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + P R A + + +++ + + +++ Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVV------HDGEFLLV 721 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT G +R + ++ R G M R +++ + ++++I T G +R Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIR 781 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ IR + R ++GVR + LA +++++ + D + D + + Sbjct: 782 TEVNQIRP-SSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840 Query: 768 DTEEITSLKND 778 S + Sbjct: 841 HKVSDASKDEE 851 >gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301] gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301] Length = 883 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 349/918 (38%), Positives = 513/918 (55%), Gaps = 97/918 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + + + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 26 ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS Sbjct: 86 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV DG +D+PD + L+ II+GPDFPTGA ILG GI Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM G + + +VQ AIL ++L LT + RD I E Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + +DIL+ R II EL + + RRT+I+ +M ED I E Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 539 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT+ G Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQTVLSIPNYEV---AKYLVLATRSGK 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C E+DI+L +KLG ++F Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+G+ D +++M +V Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G GI+ Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + GALV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841 Query: 889 ERVVSVERIRESEIVDEA 906 + ++S+ R E + +++ Sbjct: 842 DTILSIARNEEKDEPEDS 859 >gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] Length = 806 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 355/892 (39%), Positives = 549/892 (61%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++ Sbjct: 2 TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA R Sbjct: 62 KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE++ R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE KR A+ +++LN LY+YT +Q+ F + +AL P+ TL ++ ++ +E VV Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V + Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 F+ +SE G+GK+T ++ NR GKGIR ++K + G + + Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900 +D+I+L+S + +IR+ I SR T GV++ +T K + +V+V + E Sbjct: 755 DDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAKYFEE 806 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%) Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753 T G R A +V R GV + + GD + M ++ Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 +K + I +L + E + K +QFI+ +++KG K+TS Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622 Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + R + GI A + L+ V V N+++I+V+ KG ++ V+++ Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901 R SR GV + KD+ V+S + ++++E Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705 >gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180] gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180] Length = 833 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 362/913 (39%), Positives = 551/913 (60%), Gaps = 91/913 (9%) Query: 1 MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M ++ + + E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ Sbjct: 1 MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS Sbjct: 61 MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMAT+IP H + E++D V V++NP+ +LD ++E ++GPDFPTG +I G+ GI Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVE 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++ Sbjct: 241 AYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLC 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+ Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LSE+Q++AILE+RL RLTGL RD I+ E + Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MV Sbjct: 454 LLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V++SH GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 514 VSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKR 630 Query: 660 NKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717 LS+F I A+ LD DE++ + + +L+ + LG ++FP+ +R Sbjct: 631 TNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI- 689 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GV GI L + D V+ ++ Sbjct: 690 GRHTRGVMGIRLNENDFVVGAVVISDDGNK------------------------------ 719 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 720 ----------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQ--K 755 Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LV V V+D + +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 756 TGNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTA--DKVVYVNS 813 Query: 897 IRESEIVDEAEST 909 + E + E++ Sbjct: 814 CPKEEEPENLETS 826 >gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] Length = 816 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 346/902 (38%), Positives = 519/902 (57%), Gaps = 87/902 (9%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 SS + + + + +E+++SYL YA++VI+GRA+PD RDGLKPV RR+L+ M+++ Sbjct: 2 DQDSSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLEL 61 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G+ N+ + K AR+ GE MGKYHPHG+AAIY+ +AR++QD+SLR L++GQGNFGS+DGD Sbjct: 62 GLRHNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGD 121 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL +L D+ ++TV++ PN+D S QEP+VL +R PN+LVNG GIA Sbjct: 122 PPAAMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIA 181 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATN+P HNL EV+D A++++P I+L LM ++ GPDFPTG VILGR GI +AY T Sbjct: 182 VGMATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVILGRDGIVDAYKT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG +++RG + IE R+ IV+TEIPY VNK +++E IA+ + + I DLRDES Sbjct: 242 GRGKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G RVV+EL R A +++L QLY T LQS F V +AL +P TL IL+ F+ Sbjct: 302 NREGIRVVLELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDGRPRVLTLHQILQVFLD 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 R VV RRT++ L KA +RAH++ GL A+ +D+V+ +IR + +P +A+ L++ Sbjct: 362 HRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVE---- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 T+ SEVQ +AIL++RL RLTGL R + EL L + Sbjct: 418 ----------------------TLGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQD 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+ IL++ S L G+++ EL ++ + RRTRI + + D+ ED I ++VV +S Sbjct: 456 IERYRSILANPSILDGVVRGELQEIRAAYEDDRRTRIEDAVEDVSAEDLIPESEIVVVLS 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 G+++R+PL YR Q RGGKG G R ED + + + +TH ++ F+S G V+ + Sbjct: 516 RDGFLRRMPLQDYRCQSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP +GK + +SL +GER + D +V F T+ G +R ++ Sbjct: 576 FTLPE-PKTGKGKHVSTFVSLEEGER----VVTLRDSRLDGARFVFFVTQRGVAKRLPVT 630 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + INR+G+ + L D I V E+++LLTT GQ +R P R GR + G Sbjct: 631 ELDGINRAGRRILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRP-QGRTAHG 689 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L +GD V+ ++ Sbjct: 690 VRGVRLDEGDLVVGCDVIEPG--------------------------------------- 710 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +L +SE+G GKRT +F +R G G+RA + G LV Sbjct: 711 --------------RQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDR--TGDLVG 754 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + V ++D+++++S KG ++R+ EI RA G + + + V V IR +++ Sbjct: 755 AWGVREDDELVVISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCADLE 814 Query: 904 DE 905 +E Sbjct: 815 EE 816 >gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] Length = 806 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 355/892 (39%), Positives = 549/892 (61%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++ Sbjct: 2 TERKINIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA R Sbjct: 62 KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE++ R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE KR A+ +++LN LY+YT +Q+ F + +AL P+ TL ++ ++ +E VV Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V + Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 F+ +SE G+GK+T ++ NR GKGIR ++K + G + + + Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900 D+I+L+S + +IR+ I SR T GV++ +T K + +V+V + E Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAKYFEE 806 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%) Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753 T G R A +V R GV + + GD + M ++ Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 +K + I +L + E + K +QFI+ +++KG K+TS Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622 Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + R + GI A + L+ V V N+++I+V+ KG ++ V+++ Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901 R SR GV + KD+ V+S + ++++E Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705 >gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166] Length = 935 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 373/893 (41%), Positives = 538/893 (60%), Gaps = 55/893 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 183 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 243 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 423 AMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL++ RL+ +I++EL VK + RRT I+E LD+ D I E+ VV Sbjct: 483 LTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGG+G++ +++ED+V L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------------- 637 K + +P S +RG+ L+N+L L++GERIT ++ Sbjct: 603 LKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVI 662 Query: 638 --------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 +++ Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 663 EHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 722 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R+ GRN+ GVRG+ L +G ++ISM I Sbjct: 723 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLIPEP 781 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + +A + ++ Q L+ +E I+ + Sbjct: 782 GAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEE--IMLI 839 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854 S++G RT + R+ +G+ +SK LV + V + ++++ Sbjct: 840 SDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 889 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 95/262 (36%), Gaps = 15/262 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + + V+ FS G Sbjct: 686 YIFMATAKGTVKKTPLVQFSRPRTSG--LIALKLEEGDTLIAAAVTDGAQEVMMFSDGGK 743 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K ++ I ARG + + L +G+RI +++ ++ A+ G Sbjct: 744 VIRFKESKVRIMGRNARG---VRGMRLPEGQRIISML------IPEPGAQILTASVRGYG 794 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R + +F + R G+ + + + + + + +I+L + G VR + + Sbjct: 795 KRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVS 854 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I L+KG+ ++ + V + S Sbjct: 855 SL-GRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEALLDDDALEKEMPVISTEPS 913 Query: 775 LKNDSSVEGNISEERCQELKLK 796 G++S + Sbjct: 914 EDELLGGGGDVSPDVVPTDDED 935 >gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 814 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 362/895 (40%), Positives = 532/895 (59%), Gaps = 95/895 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++I DEM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +N Y K Sbjct: 5 NTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKS 64 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG++++YDA+ RMAQ++SLR +L++GQGNFGSVDGDPPAA RYTE R Sbjct: 65 ARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEAR 124 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A LL D+ KDTV+F PN+D S +EP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 125 LTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHN 184 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ D +IDNP+ L+ LM+ ++GPDFPTG +ILGR GIK+AYATG G +V+R + Sbjct: 185 LTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARA 244 Query: 255 HIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H+ +G R QI+++E+PYQVNKA ++++IA L RE++I IA++RDESDRQG RVVI Sbjct: 245 HVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ILN LY++T+LQ+ F VNM+AL +P L L +VAFR+E++ RR Sbjct: 305 ELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +K+ L AR RAH+L GL IA+ NLD ++ +IR + N +TARRELM R Sbjct: 365 SKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LS++Q +AIL+L+L RL L R I E + +I D+L+ Sbjct: 413 --------------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++L ++K +L VK RRT I +++ +ED I + MVVT++ G++KRV Sbjct: 459 NPRKVLSLVKDDLAEVKARYGDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGS 610 P VYR Q R G+G+S + R+ D V + + TH SVL F++ G ++ K +P Sbjct: 519 PTEVYRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLL 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G A+IN++ L + ERIT+++ + ++ AT G +R KLSDF + Sbjct: 579 RTAKGIAIINLVPLAENERITSMIAVSRFD---EETSLIMATSGGECKRTKLSDFAAVRS 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG +AM L DE++ + +I+L T G+ + FP++ +RV R S GVRGI+L Sbjct: 636 SGLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRVSQ-RASGGVRGITLE 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V + + Sbjct: 695 GDDRVAGLDVARPG---------------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 F+L V+ G+GK T+ ++ + R+G G+ V +++ G + A V+ Sbjct: 709 -------HFVLVVTTGGYGKLTAVEEYPLQRRAGSGVLTFKV--VDKTGKVAAGKVVDRE 759 Query: 851 DQIILVSDKGTLIRVPV------NEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 Q+++ + +G +IR PV I + R+T+GV++ +++RVV+ + E Sbjct: 760 HQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIRPDENDRVVNFATMVE 814 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 17/284 (5%) Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDE 683 + ++ F E++ + VV T+ G ++R + +R GK +K D Sbjct: 484 TEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKTREADS 543 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAI 740 + + + +LL T G+ I R + G+ I+L A+ +++ SM Sbjct: 544 VRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSMIA 603 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 V D + + +R D + S + E + ++ I Sbjct: 604 VSRFD--EETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGADENI 661 Query: 801 LTVSEKGFGKRT---SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 + ++ G R+ D R+S R+ G+R + + + +++V+ Sbjct: 662 ILITHNG---RSIHFPVADLRVSQRASGGVRGITL---EGDDRVAGLDVARPGHFVLVVT 715 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRES 900 G V E + RA GV+ F K +V + + + Sbjct: 716 TGGYGKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGKVVDRE 759 >gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] Length = 848 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 375/848 (44%), Positives = 528/848 (62%), Gaps = 39/848 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + E N S ++ ++F + ++ G RT + Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839 Query: 821 NRSGKGIR 828 R+ +G+ Sbjct: 840 GRNTQGVT 847 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 96/286 (33%), Gaps = 87/286 (30%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+ LSD+ R GK A K+ D I + ++ILL + G+ Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R + + A R + G V + L + +++ ++ V Sbjct: 599 YRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVTE------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 +++FI + G K+TS F +N Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTSLDQF--ANV 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP-------VNE------ 869 G+ A ++ +L+ V + +I+L S G ++R V+E Sbjct: 666 RANGLIALNLRD---EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 870 ------------IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +R R GV A ++VVS+ + ++E Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKTEGD 767 >gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7] Length = 849 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 365/907 (40%), Positives = 537/907 (59%), Gaps = 90/907 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ I V + + M+ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 DDKIFDKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGS+DGD AA Sbjct: 62 KPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + ++ D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E +DG + +ID N + ++ LMEII+GPDFPTGA+ILG+ GI AY T Sbjct: 182 NIPPHNLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG + +R V+ IE R +IV TE+PY VNKA ++EKIAELV++KRI I+DLRDES Sbjct: 242 GRGKLKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G RVVIELK+ A+ +V+LNQLY++T LQ + V M+AL +P L +L+ ++ Sbjct: 302 SREGLRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT++ LNKA +RAH+L GL IA+ ++DEV+ IIR S N A+ LM+ Sbjct: 362 HQEEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLME---- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 T L+EVQ +AI+++RL LTGL R+ I NE N L Sbjct: 418 ----------------------TFGLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ LLG+I++E+ ++D+ R+T + ++ ED I RE+ V+ ++ Sbjct: 456 IGELKAILADEKLLLGVIREEIKLIRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +R+Q RGG+G G+ DED +T+L + +TH +LFF++ G V++ K Sbjct: 516 QLGYIKRMTMDNFRSQNRGGRGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG ALIN+L L GE++T +P + E N+ Y+ ATK+G V++ + Sbjct: 576 YEIPEASRIARGTALINLLQLEPGEKVTATIPLEKYE---NDKYLFMATKNGMVKKTSIM 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++I + ++G +A+ L DE++ V+ + + I L ++ G + F +R GR S+G Sbjct: 633 EYINVRKTGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRA-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ L D ++ M + +A + Sbjct: 692 VIGMDLDADDLIVGMQVSSQGEAVLIVSEKGLGKR------------------------- 726 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 T +F + NR GKG++ ++ ++ G +V Sbjct: 727 ----------------------------TMLEEFNVQNRGGKGLKCYKIT--DKTGLVVG 756 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V VN D++++++ G +IR+PV I I R T GV + + V S+ +IRE Sbjct: 757 VKCVNAEDELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVASIAKIREDMKD 816 Query: 904 DEAESTE 910 DE S E Sbjct: 817 DEETSDE 823 >gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] Length = 871 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 358/929 (38%), Positives = 521/929 (56%), Gaps = 105/929 (11%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 MTE + I V + EMQ SYL YA++VI+GRA+P++RDGLKPVH Sbjct: 1 MTEDQNMAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+++ M G ++ Y KC+R+ G+VMGKYHPHG+ AIYD L R+ QDW+LR L G Sbjct: 61 RRVIYAMYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS DP AA RYTE R+ + A ++ D+ K+TVDF+ NYDG QEP VL AR+PN Sbjct: 121 QGNFGSPGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV +G + NPD + L+ I+GPDFPTGA Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR+GI +AY TGRGSI +R V ++E+ R+ +VVTE+PYQVN + KIA+L + Sbjct: 241 TILGRSGIDDAYRTGRGSITMRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLALKIADLTK 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 E RI IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ FS NM+AL Sbjct: 300 EGRIQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P ++ + +V + +V+ RRT +LL +A D+ H+L G A+ NLDEV+ +IR SP Sbjct: 360 PRTLSIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR L++ + + ++Q AIL L+L RL L Sbjct: 420 TVEEARGGLIE--------------------------LLGIDDIQATAILNLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I +E + L +I + DIL+S R I+ EL + D RR+ I+ ++ Sbjct: 454 ERQKIIDEHDDLERQILDYRDILASPQRQRDIVGSELSEIVDRYGDERRSTILPYGGEVS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT++ GYVKR YRAQ+RGGKG G +R++D V F+ +TH Sbjct: 514 MEDLIAEEDVVVTITRGGYVKRTRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++LG VY+ K + LP GS +++G+ + N+L+ GE I ++ E ++ Y+ Sbjct: 574 LLFFTNLGRVYRAKAYELPEGSRESKGQHVANLLAFQPGESIAQVLALRNYE---DHEYL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ +G IA+KL DE++ +ND++L ++LG Sbjct: 631 VLATRSGLVKKTRLSEYDTNRSAGLIAIKLREYDDGSVDELVKAMPVNADNDLILISRLG 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ A GD+++S +V Sbjct: 691 QSIRFTADDASLRPM-GRGTSGVIGMKFADGDELLSADVVKDDAD--------------- 734 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V++ GF KRT+ ++R+ Sbjct: 735 --------------------------------------LFVVTDGGFAKRTAISEYRVQG 756 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G+G++ + + + G LV +D+++++ +KG ++R V E+ R T+GV Sbjct: 757 RGGQGVKVAKLVE--DRGHLVGALITEQDDEVLVIMEKGKIVRSAVAEVNRTGRNTQGVT 814 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 K +R+++V R E + DE ++ E Sbjct: 815 FAKPDKKDRIIAVARNVERSLNDEDDTAE 843 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 92/254 (36%), Gaps = 14/254 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST---HTSV 589 + +V + G VK+ LS Y R G + D+ V +L + Sbjct: 624 YEDHEYLVLATRSGLVKKTRLSEYDTNRSAGLIAIKLREYDDGSVDELVKAMPVNADNDL 683 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + S LG + + P RG + + + G+ + + ++ + Sbjct: 684 ILISRLGQSIRFTADDASL-RPMGRGTSGVIGMKFADGDELLSADVVK------DDADLF 736 Query: 650 FATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706 T G +R +S++ R G KL ++ Q++++L+ + G+ V Sbjct: 737 VVTDGGFAKRTAISEYRVQGRGGQGVKVAKLVEDRGHLVGALITEQDDEVLVIMEKGKIV 796 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R ++ + GRN+ GV K D++I++A + + ++ + + Sbjct: 797 RSAVAEVN-RTGRNTQGVTFAKPDKKDRIIAVARNVERSLNDEDDTAEDGDENDVPLPDA 855 Query: 767 GDTEEITSLKNDSS 780 + + + + Sbjct: 856 AVHDTPSDATAEEN 869 >gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 883 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 349/921 (37%), Positives = 512/921 (55%), Gaps = 97/921 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + E + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 26 ADTTDYGLMESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS Sbjct: 86 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV DG +D+PD + L+ II+GPDFPTGA ILG GI Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM+ + + +VQ AIL ++L LT + RD I E Sbjct: 445 LME--------------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L I + +DIL+ R II EL + + RRTRI+ +M ED I E Sbjct: 479 HEELQRRIADYIDILAKPERQRKIIGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEE 538 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YRAQ RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 539 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT+ G Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQTVLSIPNYEV---ARYLVLATRSGK 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C ++DI+L ++LG ++F Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAQDDIILVSRLGMSLKFQA 715 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+G+ D +++M +V Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRADDSLLAMDVVP-------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G G++ Sbjct: 749 -------------------------SDSDKDLFVVTNEGFAKRTAIGEYRLQGRNGLGVK 783 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + GALV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841 Query: 889 ERVVSVERIRESEIVDEAEST 909 + ++S+ R E + +E T Sbjct: 842 DMILSIARNEEKDEPEEDGGT 862 >gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1] gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1] Length = 826 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 343/891 (38%), Positives = 530/891 (59%), Gaps = 88/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y K Sbjct: 23 EVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKS 82 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R Sbjct: 83 ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 142 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + LL D+ KDTVDF NYD + +EP VL +R PN+L+NG GIAVGMAT+IP H Sbjct: 143 MATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHR 202 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+++ + V++NP L +++++ GPDFPTG +I G+ GI AY++GRG I +R + Sbjct: 203 LDEIIEALIFVLENPQASLSDILDLVPGPDFPTGGIIHGKQGILEAYSSGRGRIRVRAKT 262 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ RE I++ E+PYQ NKA ++E+I+EL R+K + I+++RDESDR+G RVVI+L Sbjct: 263 RLERIE-GRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDL 321 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A ++LNQLY+ + ++S FS+ ++A++ +P F L+ +LK F+ R+ +V+RRT Sbjct: 322 KREANAQIVLNQLYKSSGMESTFSIILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRRTI 381 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+ R H+L GL +A+ N + V+ +I+ S + +A+ L+Q Sbjct: 382 YELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQ--------------- 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q++AILE+RL RLTGL ++ I E L I+E IL Sbjct: 427 -----------AHQLSQEQSKAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHA 475 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L +IK+ELL +K++ T R+T+I E + DED I REDMVVT+SH GY KR+PL Sbjct: 476 DKLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLK 535 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +Y Q+RGGKG+ ++DF+ F +TH +LF + G +Y KV+++P A Sbjct: 536 IYEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAI 595 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKAL+N++ + GE+I I+ P+ + ++VF TK G ++R +LS F ++ G Sbjct: 596 GKALVNLIDIEPGEKICAILSTPDFS---PDKFLVFFTKKGMIKRTQLSAFGRVRI-GVR 651 Query: 675 AMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +++L D +++ + + ++ + T G C+RF S +R GR ++GV G+ L +GD Sbjct: 652 SIELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVRDM-GRTAMGVIGMRLKEGD 710 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI +I L Sbjct: 711 FVIGASIALS-------------------------------------------------- 720 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +LT+S KG GK+T +R+ NR G G+ ++ + G LVA+ V++ + Sbjct: 721 --DQHKLLTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTP--KTGNLVAIVHVDEGQDL 776 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +L++ G +IR+P+ IR R GV + S + + VV + V+ Sbjct: 777 MLLTKNGKMIRMPMESIRETGRHASGVKLVSV-EGDGVVYANTCPKENEVE 826 >gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] Length = 954 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 373/893 (41%), Positives = 538/893 (60%), Gaps = 55/893 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 22 ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 81 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 82 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 141 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNI Sbjct: 142 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 201 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I I Sbjct: 202 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 261 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R + IE R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G Sbjct: 262 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 321 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 322 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 381 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ Sbjct: 382 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 441 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +++ + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 442 AMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 501 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL++ RL+ +I++EL VK + RRT I+E LD+ D I E+ VV Sbjct: 502 LTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVV 561 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+ Y+AQRRGG+G++ +++ED+V L + ++HT++L FSS G VY Sbjct: 562 TISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYW 621 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------------- 637 K + +P S +RG+ L+N+L L++GERIT ++ Sbjct: 622 LKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVI 681 Query: 638 --------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 +++ Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 682 EHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 741 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R+ GRN+ GVRG+ L +G ++ISM I Sbjct: 742 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLIPEP 800 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + +A + ++ Q L+ +E I+ + Sbjct: 801 DAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEE--IMLI 858 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854 S++G RT + R+ +G+ +SK LV + V + ++++ Sbjct: 859 SDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 908 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 96/262 (36%), Gaps = 15/262 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + + G VK+ PL + R G + + + D + + V+ FS G Sbjct: 705 YIFMATAKGTVKKTPLVQFSRPRTSG--LIALKLEEGDTLIAAAVTDGAQEVMMFSDGGK 762 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V + K ++ I ARG + + L +G+RI +++ + ++ A+ G Sbjct: 763 VIRFKESKVRIMGRNARG---VRGMRLPEGQRIISML------IPEPDAQILTASVRGYG 813 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R + +F + R G+ + + + + + + +I+L + G VR + + Sbjct: 814 KRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVS 873 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV I L+KG+ ++ + V + S Sbjct: 874 SL-GRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEALLDDDALEKEMPVISTEPS 932 Query: 775 LKNDSSVEGNISEERCQELKLK 796 G++S + Sbjct: 933 EDELLGGGGDVSPDVVPTDDED 954 >gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bifidobacterium longum DJO10A] gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A] gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68] gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F] gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM 1217] gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A] gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68] gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM 1217] gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F] Length = 883 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 348/918 (37%), Positives = 512/918 (55%), Gaps = 97/918 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + + + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 26 ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS Sbjct: 86 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV DG +D+PD + L+ II+GPDFPTGA ILG GI Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM G + + +VQ AIL ++L LT + RD I E Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + +DIL+ R II EL + + RRT+I+ +M ED I E Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YR+Q RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT+ G Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C E+DI+L +KLG ++F Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+G+ D +++M +V Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G GI+ Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + GALV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841 Query: 889 ERVVSVERIRESEIVDEA 906 + ++S+ R E + ++ Sbjct: 842 DTILSIARNEEKDEPEDG 859 >gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705] gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705] Length = 883 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 512/918 (55%), Gaps = 97/918 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + + + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 26 ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS Sbjct: 86 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV DG +D+PD + L+ II+GPDFPTGA ILG GI Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM G + + +VQ AIL ++L LT + RD I E Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + +DIL+ R II EL + + RRT+I+ +M ED I E Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YR+Q RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP G+ ++G+ + N+L E I T++ P E Y+V AT+ G Sbjct: 599 RVYRIKAYELPEGARDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C E+DI+L +KLG ++F Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+G+ D +++M +V Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G GI+ Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + GALV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841 Query: 889 ERVVSVERIRESEIVDEA 906 + ++S+ R E + ++ Sbjct: 842 DTILSIARNEEKDEPEDG 859 Score = 69.4 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 90/239 (37%), Gaps = 13/239 (5%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI----VSTHTSVLFFSSLGFV 598 + G VK+ PL+ Y + R+GG ++ + D I + ++ S LG Sbjct: 651 TRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMS 710 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 K + + P R A + + + + + P D ++ + T G + Sbjct: 711 LKFQADDEQL-RPMGRQTAGVQGMKFRNDDSLLAMDVVPGD----SDKDLFVVTNEGFAK 765 Query: 659 RNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R +S++ N G A++L ++ ++++ ++ K G+ +R + ++ Sbjct: 766 RTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVK- 824 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GRN+ GV KGD ++S+A D D + + + Sbjct: 825 RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDGGDAAANGTAETAQSGENVNNADEA 883 >gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] Length = 985 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 369/970 (38%), Positives = 537/970 (55%), Gaps = 78/970 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A DN +I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R H+L GL +A+AN+D+++ I+ S NP AR L+ W A + +++ Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423 Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 S LS Q AILELRL RLTGL +D + E + Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +IK+EL+ V + RRT IVE +D ED I E +V Sbjct: 484 ILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y AQRRGG+G+S M+++DF+ L + S H +VL F+++G VY Sbjct: 544 LTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF--ATKHGNV 657 + +V+ +P S +RG+ +IN+L L+ E IT I+P + + F K V Sbjct: 604 RLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTNTV 663 Query: 658 RRNKLSDFIQINRSGKIAMKLDS--------------------------RDEIL-----S 686 + + A+ + DEI+ Sbjct: 664 KLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFAQQ 723 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E+ + + + T G R + F+ S G+R I L + D +I + I Sbjct: 724 AESVRKNYYVFMATASGTVKRV---ELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQ 780 Query: 747 ---------------------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + ++ + + + S DSS + Sbjct: 781 IMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVV 840 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S + + +L S G+GKRT DF R GKG+ A S+ N G LV Sbjct: 841 SRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GELVGAV 898 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-- 903 +++ +++L+SD GTL+R E+ R +GV + + E +V V I E Sbjct: 899 AIDETKELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEV 958 Query: 904 ---DEAESTE 910 + ESTE Sbjct: 959 EAFETVESTE 968 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 21/257 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VKRV L + R G + + +ED + + I ++ FS+ G Sbjct: 732 YVFMATASGTVKRVELEQFSNVRSNG--LRAIELNEEDTLIGVTITDGEQQIMLFSNEGK 789 Query: 598 VYKEKVWRLPIGSPQARGKALI---------------NILSLNQGERITTIMPFPEDESS 642 + + A+G + + Sbjct: 790 AIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVV 849 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699 V+ A+ +G +R + DF R G IA+K E++ + +++L Sbjct: 850 PETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDETKELMLI 909 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G VR + + GRN+ GVR I L +G+ ++ + + + D E ++ Sbjct: 910 SDGGTLVRTRAAEV-AQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEVEAFETVESTE 968 Query: 760 AQRRLISGDTEEITSLK 776 + + Sbjct: 969 QLEVEKTETEHQQPQED 985 >gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] Length = 821 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 356/846 (42%), Positives = 521/846 (61%), Gaps = 36/846 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +E+ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G ++N+L +++GE + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L DQV+ M IV + + Y K + + N + G + Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKL 751 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + E+ I+ ++ G R R+ +G+R + E+ + Sbjct: 752 VAVKSV---TGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKA- 807 Query: 846 PVNDND 851 ++ D Sbjct: 808 QKDEED 813 >gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] Length = 879 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 375/849 (44%), Positives = 532/849 (62%), Gaps = 20/849 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A ID+ +I L+ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + +G YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 427 AGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I +A + + S Sbjct: 723 GINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGK 782 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q + I+ +++ G RT + I R+ +G+ ++ +V + Sbjct: 783 VVGAVQVDTADQ--IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDE---HVVGLQ 837 Query: 846 PVND--NDQ 852 V + D+ Sbjct: 838 RVAEPVEDE 846 Score = 67.9 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 15/210 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L+ + R G + DE DL + FS+ G V + Sbjct: 650 TASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSDEAMLFSAEGKVVRFS 707 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + ++L +R+ +++ ++ T++G +R + Sbjct: 708 EQAVRSMGRTATG---VRGINLQGEDRVVSLI------IPRGEGDILTVTQNGFGKRTAV 758 Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ +R+ K + + +++ + I++ T G VR +S + GR Sbjct: 759 SEYPTKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSEV-SIVGR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYD 749 N+ GV I A+ + V+ + V D + Sbjct: 818 NTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847 >gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12] gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12] Length = 826 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 362/910 (39%), Positives = 553/910 (60%), Gaps = 93/910 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++ ++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FILSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIADLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F G A+ LD DE++S + + +L+ + LG ++FP+ +R GR Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GR 685 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV GI L + D V+ ++ Sbjct: 686 TTRGVIGIKLNENDFVVGAVVI-------------------------------------- 707 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKG+ +++ + G Sbjct: 708 --------------SGDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 751 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 LV + V+D + +++++ +IRV + +IR R T GV + +TA ++V+ V Sbjct: 752 NLVGIISVDDENLDLMILTASAKMIRVSIKDIRETGRKTSGVKLINTA--DKVMYVNSCP 809 Query: 899 ESEIVDEAES 908 + E + E+ Sbjct: 810 KEEESEILEN 819 >gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] Length = 809 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 358/889 (40%), Positives = 518/889 (58%), Gaps = 84/889 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+Q G+ N+K+ K Sbjct: 3 GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+A+IYDA+ R+ Q W++R L++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L DL K+TV +PNYD + EP VL + PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID PDI LD +M + GPDFPTG I R GI+ AYATG + +RG + Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRIS-RQGIREAYATGHAGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 I++ R QIV+TEIPYQVNK +++ I+ + + +I DI+ LRDESDR + R+V+E Sbjct: 242 RIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA ++LNQLY+YT LQS F+V +++ +P LI ++AF+ R +VV RRT Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA +RAH+L GL A+ ++DEV+ IR S AR LMQR Sbjct: 361 QYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQR------------- 407 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E+Q +AIL++RL RL GL R+ + E + L I IL Sbjct: 408 -------------FTLTEIQAQAILDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGD 454 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L IK+E+ ++D RR+ I + D+ ED I EDMV+T++ GY+KR L Sbjct: 455 ERLLWREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTKL 514 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP A Sbjct: 515 DAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G + N++ I + VFATK G V++ ++++ I +G Sbjct: 575 KGTHIRNLIP--ALREDENIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITSAGL 632 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V+ +D++L TK GQ +RF + +R GR + GV GI L +GD Sbjct: 633 IAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRFAATEVRD-TGRATQGVIGIRLREGD 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SMA+V + + Sbjct: 692 EVVSMALVPSGEESSE-------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L +SE G GKRT D+ R G G+ DV+ ++ G LVA+ V N+++ Sbjct: 708 ------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVT--DKTGKLVALTHVAGNEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++++KGT+IR V E+R+ R +GV + + + +RV+S IR + Sbjct: 760 MVLTEKGTVIRTRVEEVRVTGRNAQGVKVINLGEKDRVISAFPIRREDE 808 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 56/261 (21%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLTTKLGQC 705 V+ TK G ++R KL + +R G+ A D V + + +L T G+ Sbjct: 500 VITMTKAGYLKRTKLDAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRV 559 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 I + AGR++ G Sbjct: 560 FHEKIYDL-PEAGRDAKG------------------------------------------ 576 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824 I +L + NI+ + + + +++G K+T ++ I++ Sbjct: 577 ----THIRNLIPALREDENIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITS--- 629 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 G+ A ++ L+ V D D ++L + +G +R E+R RAT+GV+ Sbjct: 630 AGLIAINLQPG---DELIGVDIQRDGDDVVLATKEGQAMRFAATEVRDTGRATQGVIGIR 686 Query: 885 TAKDERVVSVERIRESEIVDE 905 + + VVS+ + E E Sbjct: 687 LREGDEVVSMALVPSGEESSE 707 >gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] Length = 846 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 358/888 (40%), Positives = 517/888 (58%), Gaps = 86/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Sbjct: 2 NNEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YD+L RMAQD+S+R L++G GNFGSVDGD AA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G IDNPDI + LM I+GPDFPT +I+G++GIK AY TGRG ++I Sbjct: 182 PPHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVII 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+ Sbjct: 242 RSKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LNQLY++T +Q F + M+AL +P +L +LK ++ F+EEV+ Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L+KA RAH+L GL IA+ ++DEV+++IR S AR L+ + Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTGL R+ I E L IK +I Sbjct: 412 ----------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549 LS + LL IIK EL +K + RRT IV G + + ED I D+V+T++H GY+K Sbjct: 456 LSDKDLLLKIIKDELNEIKVKYGDERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y AQRRGG+G + +++DFV + STH ++LFFS+ G VYK K +++P Sbjct: 516 RLPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEA 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G L+N+L P +DE N +Y+ Sbjct: 576 GRTAKGMNLVNLL------------PLEKDEKIQNVIYL--------------------- 602 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + + +++ TK G + + G+ I+L Sbjct: 603 ------------------KEFKPDRYLIMGTKNGLIKKTSLDKYSSI---RKNGLNAINL 641 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D++IS V D + + + + + + E Sbjct: 642 RENDELIS---VRVTTGDCNIIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVV 698 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ E+ +L VSE G+GKRT ++ + R GKG+ +S+ + G L+ V D Sbjct: 699 SMEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVED 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D+++L++D G IR+ V++I + SR GV + T ++E+VV++ ++ Sbjct: 757 EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKV 804 Score = 82.5 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + V G+ ++ ++L + ++T++ G+ KR + R G+GI+A Sbjct: 479 DERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQAMTTK 538 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890 + + + ++ + +D I+ S++G + ++ +I A R KG V + KDE+ Sbjct: 539 EDDFVEHIITS---STHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKDEK 595 Query: 891 VVSVERIRE 899 + +V ++E Sbjct: 596 IQNVIYLKE 604 >gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7] Length = 826 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 357/886 (40%), Positives = 541/886 (61%), Gaps = 89/886 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RY Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H + E++D + V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + + Sbjct: 187 PPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RV Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++ Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIII 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER---------- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTGL RD I+ E +L I + I Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKR Sbjct: 460 LKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 520 VDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A GKA++N++SL E+I + + + + F TK+G V+R LS+F Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFESNRS 636 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV GI L Sbjct: 637 CGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGIRL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ ++ Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+D Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761 Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYV 805 Score = 87.5 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 19/237 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733 + LD+ DEI+ + +Q + K RF +S I + + +R L + D Sbjct: 387 IALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI---QSKAILEMRLQRLTGLERD 440 Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 ++ +L +D + + ++ + + +E S + ++ + ++ Sbjct: 441 KIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIED 500 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L E ++++S KG+ KR + NR GKG +S + F V + Sbjct: 501 LIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKG----KLSGSTYEDDFIENFFVANTHD 556 Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 I+L +++KG L + V +I ASR G V + S A DE++ + + + DE Sbjct: 557 ILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKI--MATLSTKDFSDE 611 >gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA] gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA] Length = 883 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 511/918 (55%), Gaps = 97/918 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 + + + I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M Sbjct: 26 ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 G ++ Y KC+R+ G+VMGKYHPHG++AIY L RMAQ WS+R +L++GQGNFGS Sbjct: 86 DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPG 145 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DP AA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG G Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237 IAVGMATNIP HN+ EV DG +D+PD + L+ II+GPDFPTGA ILG GI Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 + AY TGRG I +R V + E+ R +VVTE+PYQVN ++ I E VR+ +I IA Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324 Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P +L Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 ++ +V + +V+ RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LM G + + +VQ AIL ++L LT + RD I E Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + +DIL+ R II EL + + RRT+I+ +M ED I E Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVTV+H G++KR YR+Q RGGKG G +R++D V F+ STH +LFF++ G Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT+ G Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+++ + G IA++L + DE++ C E+DI+L +KLG ++F Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+G+ D +++M +V Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ + V+ +GF KRT+ ++R+ R+G GI+ Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A + + GALV V+++DQ++ + G +IR V+E++ R T+GV K Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841 Query: 889 ERVVSVERIRESEIVDEA 906 + ++S+ R E + ++ Sbjct: 842 DTILSIARNEEKDEPEDG 859 >gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204] gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204] Length = 860 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 362/904 (40%), Positives = 545/904 (60%), Gaps = 89/904 (9%) Query: 3 EHIISSDEEEEK--GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 + + DE IT +T E++ +L Y+++VI+ RA+PD+RDGLKPV RRIL+ M Sbjct: 4 DDFMEFDESNFDPGHITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSM 63 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +M + +K Y K ARI G+ MGKYHPHG+++IY AL +AQ W++R +L++G GNFGS+ Sbjct: 64 HEMNIGPDKAYRKSARIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSM 123 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K A +L DL KDTVD NYDG +EP VL +RYPN++VNG Sbjct: 124 DGDDPAAMRYTEARMSKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSS 183 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HNLGE +DG AV+DNP+I LM ++GPDFPTGA ILGR+GI+ A Sbjct: 184 GIAVGMATNVAPHNLGETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYILGRSGIRQA 243 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS+++R + IE+ + +IVV E+PY VNKA+++E+IA LVR+K I I DLR Sbjct: 244 FETGRGSVIMRAKTKIEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDLR 303 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+ G RVVIEL++ DV+LNQLYR T LQS F VN V L P + ++I +LK Sbjct: 304 DESNMDGIRVVIELRKDIQPDVMLNQLYRSTPLQSNFGVNNVVLFNGVPRQASMIDLLKG 363 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++AF++EV+VRRT++ L KA+DRAH+L GL IAV NLD ++ IR S +P A LM+ Sbjct: 364 YIAFQDEVIVRRTQFDLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLME- 422 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L E+Q +AIL+++ RLTGL R+ I NE L Sbjct: 423 -------------------------GFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDL 457 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+I + DILS+ +R+L II+ EL VK + + PRR+ I++ + D+EDED I E++++ Sbjct: 458 LIKIADFQDILSNHARVLQIIRDELSEVKAKFNDPRRSEIIDAIADVEDEDLIPVENIII 517 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S GY+KR+ Y Q RGGKG G+ + +D + +STH +L F+ G VY+ Sbjct: 518 TLSSNGYIKRLTTDTYHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYR 577 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ++G IN++S+ + E I ++P+ +D ++ ++ F TK G ++R Sbjct: 578 IKGYNVPEFSRTSKGIPAINLISMEKTENIRALVPYSQD---HDSKFLFFVTKQGIIKRT 634 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ IN++GKIA+KL+ DE+ V + +I++ G+ VRF + +R GR Sbjct: 635 TFDEYENINKNGKIAIKLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPL-GRT 693 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G ++ G VI +A L + Sbjct: 694 ARGVKGFNVDGG-YVIGLATNLEGE----------------------------------- 717 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +ILT++E GFGK++S D+R++ R +G++ +V++ + G Sbjct: 718 ------------------YILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQ--KSGK 757 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV + V ++ ++++ G +IR+ + ++ + SR+ +GV + + KD+ V SV + Sbjct: 758 LVCMRAVRGDEDCMIMTAGGIVIRISLKQVSVYSRSAQGVKVINV-KDDIVSSVAILEPE 816 Query: 901 EIVD 904 E + Sbjct: 817 EDSE 820 >gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1] Length = 852 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 358/888 (40%), Positives = 538/888 (60%), Gaps = 93/888 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ +K + KCARI Sbjct: 12 EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+ MGKYHPHG+ +IY+AL ++AQ+W+ R L++G GNFGSVDGD AA RYTE RL K Sbjct: 72 VGDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG GIAVGMATNIP HNL E Sbjct: 132 ISMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191 Query: 198 VVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 ++ + +IDN + ++D +M+I++GPDFPTGA ILGR GI +AY TGRG I +R Sbjct: 192 TINAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 ++ IE + + +IVVTE+PY VNK+ +++ + +LV+ KRI I D+RDES R+G RVVI Sbjct: 252 ITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL++ +A+VILNQL+++T LQ F M+AL P+ + +L ++ +E+VV RR Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNIKDMLTYYLKHQEDVVTRR 371 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY LNKA +RAH+L G IA+ N+DEV+ IIR S N A+ +L++R Sbjct: 372 TKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AI+++RL LTGL R+ I NE N L +I E +IL+ Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELIAKIAEYKEILA 465 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++LLG+IK EL ++ D+ RRT I D+ DE+ I RE++V++++ LGY+KR+P Sbjct: 466 DENKLLGVIKTELAAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 ++ Q RGGKG G+ D D + ++F+ +TH ++FF+++G VY+ K + +P Sbjct: 526 KDTFKVQNRGGKGIKGMNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG A++N+L L GE++T I+P + Y++ ATK+G V++ K+ F I ++G Sbjct: 586 ARGVAIVNLLQLLPGEKVTAIIPIAGF----DKKYLMMATKNGIVKKTKIEAFENIRKTG 641 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L+ DE++ V+ + END+ L T G C+RF +R GR S+GVRGI KG Sbjct: 642 LAAITLNEGDELIEVKATSGENDVFLVTAKGMCIRFNEECVRD-TGRTSMGVRGIRCDKG 700 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI+M + + D Sbjct: 701 DEVIAMQLDVQGD----------------------------------------------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + + + KG GKRT +F R GKG++ +++ + G +V+ V ++ Sbjct: 714 -----EMLFVTT-KGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHD 765 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIR 898 I++++++G +IR+ ++I + R T GV + + KD V SV ++ Sbjct: 766 IMMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKDGNTFVASVAKLA 813 >gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622] gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622] Length = 942 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 362/938 (38%), Positives = 529/938 (56%), Gaps = 92/938 (9%) Query: 1 MTEHIISSDEEEE--------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M + + V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPV Sbjct: 1 MADDTTDKPASPSAPPPPDSAGELIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRR+L+ M +G N+ Y K AR+ G+V+GKYHPHG++++YDA+ R+AQ+WSLR LL++ Sbjct: 61 HRRVLYAMNDLGNLHNRAYKKSARVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVD 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGSVDGD PAA RYTE R+++ A LL D+ K+TVDF PNYD S +EP+VL +++P Sbjct: 121 GQGNFGSVDGDSPAAMRYTEVRMERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GIAVGM TNIP HN+ EV+ G + +IDNP + LME I GPDFPTGA+I Sbjct: 181 NLLVNGSSGIAVGMTTNIPPHNMTEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIIT 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291 GR GI AY TGRG + IR S IE + RE I+ +EIPYQVNKA ++EKIAELVREK Sbjct: 241 GREGIVRAYETGRGQVTIRARSDIETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREK 300 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 ++ I+D+RDESDRQG R+VIELKR A + V+LN LY TSL++ F M+A++G +P Sbjct: 301 KLEGISDIRDESDRQGMRIVIELKRDAISQVVLNNLYAMTSLETTFGAVMLAIDGGQPRT 360 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L +L F+A R +VV RRT+Y L KA R H++ GL +A +D VV +IR S +P+ Sbjct: 361 LNLKEMLDRFIAHRRDVVTRRTRYELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPD 420 Query: 412 TARRELMQRSWNA---SDIKDLIDLIDDSSYTIGSDGTM--------------------Y 448 AR LM + + + ID + + Sbjct: 421 EARWGLMNILSPSLYEHERFATLQRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAG 480 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 SE Q + ILE+RL RLTGL R+++ EL L +I DIL++ LL +IK EL+ + Sbjct: 481 FSEGQAQNILEMRLQRLTGLQREELFRELIGLVRDIARLQDILANERSLLNVIKTELVEI 540 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 ++ RRT I + +M ED I E MVVT+SH GY+KR PL+ YRAQ+RGG+G++G Sbjct: 541 RERYGDKRRTEITGAVDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTG 600 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 +++DFV+ LF+ STH ++ ++ G +Y KV ++P S +RGKA++N++ +GE Sbjct: 601 AATKEDDFVSKLFVASTHAYLMPITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGE 660 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 R+ ++ + Sbjct: 661 RLAQVLVTRDFP------------------------------------------------ 672 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 + + TK G R + + F S G+ + + GD+++++ I + Sbjct: 673 ---ENRYVFFVTKRGVVKR---TDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDIL 726 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 M + + S + + E ILTV+E G+ Sbjct: 727 LSTASGMSIRFPETEVRSMGRQAYGVKGITLEDGDEVVGADVVETDAA---ILTVTENGY 783 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT ++R R GKGI ++ N G +V + V + D+++LV++ G LIR+ V Sbjct: 784 GKRTQEAEYRQQGRGGKGIIDIKTTERN--GKVVGLLQVKEADEVMLVTNGGMLIRMRVK 841 Query: 869 EIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905 EI + R T+GV + + + E+V+++ ++ ES+ +E Sbjct: 842 EISVIGRNTQGVRLIALENEQEKVMAISKLPESDESEE 879 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 97/247 (39%), Gaps = 16/247 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V V+ G VKR LS + R G G+ D D + + I +L Sbjct: 671 FPENRYVFFVTKRGVVKRTDLSAFENVRSSGIIALGID--DGDELVAVMITDGSKDILLS 728 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G + + QA G + ++L G+ + + ++ T Sbjct: 729 TASGMSIRFPETEVRSMGRQAYG---VKGITLEDGDEVVGADVVET------DAAILTVT 779 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + +++ Q R GK + + +++ + + ++++L T G +R Sbjct: 780 ENGYGKRTQEAEYRQQGRGGKGIIDIKTTERNGKVVGLLQVKEADEVMLVTNGGMLIRMR 839 Query: 710 ISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + I GRN+ GVR I+L + ++V++++ + +D + A + Sbjct: 840 VKEI-SVIGRNTQGVRLIALENEQEKVMAISKLPESDESEENGEAVAPAEGAVPTAEANA 898 Query: 769 TEEITSL 775 E + Sbjct: 899 PEATDAA 905 >gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum] Length = 907 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 381/872 (43%), Positives = 536/872 (61%), Gaps = 42/872 (4%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R + Sbjct: 187 LTEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +E I+V EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 247 DIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ P+ F L +LK FV R EVV RRT Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGLPKLFNLKEMLKCFVDHRREVVTRRTI 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 367 FELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLERA 426 Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + DG +L+E Q +AILELRL RLTGL + I +E +L EI E Sbjct: 427 GTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+ VT+SH G Sbjct: 487 LMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIAREDVAVTLSHAG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK LS Y AQRRGGKG+S M++ED++ L + +TH +L FS+ G Y+ KV++L Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGKTYRLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARGK ++NIL L +GERIT I+P E ++ ++ AT G V++ LS F Sbjct: 607 PLASRTARGKPIVNILPLEEGERITAILPVTEFS---DDKFIFMATGDGTVKKTSLSSFA 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------------- 712 + +G IA+ L D ++ V+ ++I+L +K G+ VRF S Sbjct: 664 NVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPVLD 723 Query: 713 -----------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRG+ LA+GDQV+S+ IV D D Sbjct: 724 EHGQPEIKFKGVRAM-GRTASGVRGMKLAEGDQVVSL-IVPSNDGDILTVTQNGYGKRTT 781 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + + E N + + ++F + +++ G RT + Sbjct: 782 LGEYPTKGRATQGVVSIKVSERNGQVAGAVQTEEGDEF-MMITDAGTLVRTRVAEVSQVG 840 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 R+ +G+ ++ +V + + + + + Sbjct: 841 RNTQGVTLIRTAEDE---NVVGLQRIEEIEDV 869 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 67/447 (14%), Positives = 149/447 (33%), Gaps = 36/447 (8%) Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 E ++ K LL + + H+L + + E + +R + ARR + + + Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDA--FGDARRTEITAATHD 526 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D+++LI D + + Y Q + E + G ++ E + + Sbjct: 527 IDMEELIAREDVAVTLSHAGYVKY----QILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536 D + S + ++ + T R IV L E E + Sbjct: 583 ANTHDHILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVTEFSDD 642 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ LS + R G V +R++D + + I ++ ++ FS G Sbjct: 643 KFIFMATGDGTVKKTSLSSFANVRSNG--LIAVNLREDDSLIGVDITDGNSEIMLFSKFG 700 Query: 597 FVYKEKVWRL----PIGSPQARGKALINILSLNQGERITTIMP------------FPEDE 640 V + K + + + Sbjct: 701 KVVRFKESEETPVLDENGQPVLDEHGQPEIKFKGVRAMGRTASGVRGMKLAEGDQVVSLI 760 Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDIL 697 N+ ++ T++G +R L ++ R+ + + + + V + ++ + Sbjct: 761 VPSNDGDILTVTQNGYGKRTTLGEYPTKGRATQGVVSIKVSERNGQVAGAVQTEEGDEFM 820 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 + T G VR ++ + GRN+ GV I A+ + V+ + + + + Sbjct: 821 MITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIEEIEDVELPEGEELPE 879 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784 A ++ ++ + SS + Sbjct: 880 GEASVAILEVQSDAEETDSEPSSDSED 906 >gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] Length = 841 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 358/827 (43%), Positives = 525/827 (63%), Gaps = 35/827 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 DTPNSQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D++ NYDG+ +EPVV+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ PD+ + LMEII GPDFPT +ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S +E I+V EIPYQVNKA ++EKIAELVR+KRI I DLRDESDR G R Sbjct: 243 LRAKVEIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM + Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I +E +SL I E Sbjct: 414 -----------------FNLSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL VK+ + RRT IV G+ +EDED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S YRAQ+RGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S A+G +IN+L +++ E + I+P E ++ ++ F TK G +R+ LS F I Sbjct: 577 FSRTAKGIPIINLLGVDKDEWVNAIIPVEEFA---DDWFLFFTTKQGISKRSPLSSFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV +I++ T G +RFP +R GR + GV+GIS Sbjct: 634 RNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSM-GRTATGVKGIS 692 Query: 729 LAKGDQVISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L+ GD+V+ M ++ Y K A + G + N + G++ Sbjct: 693 LSAGDEVVGMEVLEDDSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVS 752 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + E+ ++ ++ G R + D R+ +G+R +++ Sbjct: 753 MKAV---TGEEDVMLITTGGVLIRMAVNDISTMGRNTQGVRLIRINE 796 >gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 821 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 338/900 (37%), Positives = 536/900 (59%), Gaps = 86/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + I V I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G ++ Sbjct: 3 DNNQDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQ 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR G+V+GKYHPHG++++Y AL RMAQ+W LR L++GQGNFGS+DGD PAA R Sbjct: 63 PYKKSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A +L D+ K+TVDF N+D + +EP VL R P +L+NG GIAVGMATN Sbjct: 123 YTEARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +P HNL E ++G +A ID+ +ID+D LM+ I+ PDFPTGA I G GI+ + G+G I Sbjct: 183 MPPHNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIYGFQGIREVFEVGKGRI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++RG IE ++E+IV+ EIPY VNK ++E IA LV EK++ + + DESDR+G Sbjct: 243 LLRGKVEIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+++K+ ++ V+LN+LY+ T+L+S F+VN +AL +P L ++ FV R EV Sbjct: 302 RIVVDVKKDFNSGVLLNKLYKLTALESSFNVNNIALVNGRPRTLNLKELICYFVEHRVEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 VVRRT+Y LN+ R H++ GL IA ++DE+V II S NP A L Sbjct: 362 VVRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRL----------- 410 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 G L+E+Q+RAI+E+RL +LTGL +D +R E L I Sbjct: 411 ---------------SGRFDLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWK 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +ILS+R+ L+ IIK EL+ V+D R+T IV D +D ++M++T+SHLGY+ Sbjct: 456 EILSNRNILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL +RAQ RGG G +RD+DFV ++ + H +LFF+ G Y KV+++P Sbjct: 516 KRTPLVDFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPA 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G+ ++G+A+ N+L+++ ++++ + D+ + Y+VF TK G +++ L+ + Sbjct: 576 GAKTSKGRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE+++V+ N+I++ + G+ +RF + +R GR + GV Sbjct: 636 RPRQNGVKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSM-GRLAAGVIS 694 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L D++I M I+ Sbjct: 695 MTLDLVDDEIIGMIIIND------------------------------------------ 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 K + +L VSE+G+GKR+ D+RI NR GKGI+ ++++ + G LV++ Sbjct: 713 ---------KKRENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITE--KTGFLVSIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904 V +++ +++++ G IR+ V+++ + RAT+GV + + K + + SV ++ ++ Sbjct: 762 NVTEHNDVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEKRGDEIASVCKVMSETDLE 821 >gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1] gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1] gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1] gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1] gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1] gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1] gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1] gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1] gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2] gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1] gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2] gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1] gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1] Length = 891 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 507/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 7/268 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G ++D + S VL Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + P R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ GD V +A+ + + ++ + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGE 863 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797 S D + + + E Sbjct: 864 VVRRSDTVDGDRAVDTAGNDMKPEDNGE 891 >gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN] Length = 834 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 342/901 (37%), Positives = 522/901 (57%), Gaps = 91/901 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +++ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + ++ NP +D +++++ GPDFPTG +I G GI++ Y TGRG I + Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKV 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ E I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G R Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+E+K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + +E Q AILELRL +LTGL + I+ E L +I Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +LS + II+ EL + RRT I + ED I E +++T+S YV Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE + I+ + N ++ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ + + E ++L T LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V+S IV Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 PV D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E D Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817 Query: 905 E 905 E Sbjct: 818 E 818 >gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] Length = 831 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 360/901 (39%), Positives = 540/901 (59%), Gaps = 90/901 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 7 NETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVA 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RY Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H + E++D V V++NP+ +L+ ++E I+GPDFPTG +I G+ GI AY TGRG + + Sbjct: 187 PPHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIYGKVGIIEAYKTGRGRVKV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RV Sbjct: 247 RAKVHVEKTK-NKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++ Sbjct: 306 VIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIII 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMER---------- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q++AILE+RL RLTGL RD I+ E +L I E I Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNGI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKR Sbjct: 460 LKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V L Y Q RGGKG+ + DF+ F+ +TH +LF ++ G +Y KV+++P S Sbjct: 520 VDLKAYERQNRGGKGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A GKA++N++SL E+I + + + + F TK+G V+R LS+F Sbjct: 580 RIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636 Query: 671 SGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 I A+ LD DE++S + + +L+ + G ++FP+ +R GR++ GVRGI Sbjct: 637 YSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFPLEDVREI-GRSARGVRGIR 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI ++ Sbjct: 696 LNENDFVIGAVVISDDHNK----------------------------------------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R R GKG+ ++K + G LV + V+ Sbjct: 715 -----------LLSVSENGLGKQTLAESYREQARGGKGVIGMKLNK--KTGNLVGIISVD 761 Query: 849 DND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D + +++++ +IRV + +IR R GV + ++VV V + E + E Sbjct: 762 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI--DAADKVVYVNSCPKEEEPENLE 819 Query: 908 S 908 + Sbjct: 820 T 820 >gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] Length = 843 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 371/915 (40%), Positives = 539/915 (58%), Gaps = 100/915 (10%) Query: 1 MTEHIISSDEEEEKGITS-----------VSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 M + I+S+ +E + ++ M++S+L Y+++VI+ RA+PD+RDGL Sbjct: 1 MNDDTITSNTAQEGEVIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHRRILF M + G ++VK ARI+G+VMGKYHPHG+AAIYD++ R+AQDWS+R + Sbjct: 61 KPVHRRILFSMEKNGWRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYM 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++GQGNFGS+DGDPPAA RYTE R+ K LL DL K+TVDFR NYDG +EP VL A Sbjct: 121 LVDGQGNFGSMDGDPPAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPA 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTG 228 + PN+L+NG GIAVGMATNIP HNL E+VD V +ID PD L+ L++ ++GPDFPTG Sbjct: 181 KLPNLLLNGQIGIAVGMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTG 240 Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288 ++ G ++ AYATGRG I +R ++ IE+T + QIVVTE+PY VNKA ++E+IAEL Sbjct: 241 GIVYGGDSMRQAYATGRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELH 300 Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY- 347 +EK+I I D+RDES R R+VIELK+ + +LNQLY+ T+LQ+ F NM+AL Sbjct: 301 KEKKIT-IQDVRDESARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDGI 359 Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407 +P L IL+ ++ R+ VV RRT++ L KA+DRAH+L G IA+ N+DEV++IIR S Sbjct: 360 QPRVLGLQDILEEYLKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRAS 419 Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467 N + A R LM + LSEVQ ++IL L L LTG Sbjct: 420 QNTDEAARNLMDK--------------------------FKLSEVQAKSILALPLRTLTG 453 Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LD 526 L R I +EL L I + IL+ +L IIK ELL +K++ RRT+I+ Sbjct: 454 LERQKIEDELAELRALIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGK 513 Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 DE+ I ED++V ++ Y+KR +S YR Q RGGKG+ G+ ++ D + L STH Sbjct: 514 FSDEELIPDEDVIVLLTTENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTH 573 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 +LFF++ G V++ K + +P S A+G A +N+L L ERIT+I+ + ++ Sbjct: 574 EWLLFFTNRGRVFRIKTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRLEK--GQKDDG 631 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+ AT HG V++ L ++ I +G IA+KLD DE+ + + +N+++++T GQ + Sbjct: 632 YLFMATTHGTVKKTPLKEYSNIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAI 691 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF S R GR++ GVRGI L GD+++ M Sbjct: 692 RFNESDARPM-GRSARGVRGIRLRPGDRLVGM---------------------------- 722 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +L ++ +L VS+KG+GK T + +F R G G Sbjct: 723 -------------------------DLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVG 757 Query: 827 IRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 I++ V+ + G +VAV + +++++S KG IRV + +I R T+GV I Sbjct: 758 IKSAVVTA--KTGNVVAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRL 815 Query: 886 AKDERVVSVERIRES 900 ++ + V S+ I E Sbjct: 816 SEGDEVASLGIIPEQ 830 Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 102/238 (42%), Gaps = 20/238 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730 + LD+ DE++ + +Q D +F +S ++ R G+ Sbjct: 404 IALDNIDEVIKIIRASQNTD---EAARNLMDKFKLSEVQAKSILALPLRTLTGLE--RQK 458 Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D++ + A++ +A + +K + A+ + + K S G S+E Sbjct: 459 IEDELAELRALIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGKFSDEE 518 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + ++ +L +E + KRT ++R +R GKG R +++ I LV P + Sbjct: 519 L--IPDEDVIVLLTTEN-YIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLV---PAST 572 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 ++ ++ +++G + R+ E+ AS KG V + +ER+ S+ R+ + + D Sbjct: 573 HEWLLFFTNRGRVFRIKTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRLEKGQKDD 630 >gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] Length = 888 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 350/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%) Query: 1 MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M ++E+ ++ + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+ Sbjct: 1 MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G ++ Y KCAR +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNF Sbjct: 61 YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS DPPAA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L N Sbjct: 121 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233 G GIAVGMATNIP HN+ E+ +G +D+P+ + L+ II+GPDFPTGA ILG Sbjct: 181 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 GI+ AY TGRG I +R V + E+ R +VVTE+PYQVN + I E VR+ +I Sbjct: 241 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 299 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P Sbjct: 300 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 359 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L ++ +V + EV+ RRT+YL +A +R H+L GL A+ +DEV+R+IR S E Sbjct: 360 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGRED 419 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+ + + +VQ AIL ++L RL + R Sbjct: 420 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 453 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L +I + DIL+ R I+ EL + + RRT+I+ +M ED Sbjct: 454 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 513 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E++VVTV+H G++KR + YRAQ RGGKG G +R++D V F+ STH +LFF Sbjct: 514 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 573 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT Sbjct: 574 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 630 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705 + G V++ L+++ + G IA++L + DE++ C +DI+L +K G Sbjct: 631 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 690 Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 ++F +R GR + GV+G+ D++++M +V Sbjct: 691 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 729 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 +Q +L V+ +GF KRT+ ++R+ R+ Sbjct: 730 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 758 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G G++A +++ G+LV V+++DQ++ + G +IR V E++ R T+GV + Sbjct: 759 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 816 Query: 884 STAKDERVVSVERIRESEIVDEAE 907 K + ++S+ R E+ DE E Sbjct: 817 KPDKGDEIISIARNEET-GEDEVE 839 >gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1] Length = 891 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 344/930 (36%), Positives = 506/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D + LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y + R+ G ++D + S VL S G + Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + + + + ++ D ++ +V AT G +R + Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754 Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ Q R G AM L ++ ++ ++I+ GQ R +S + GR Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +++GV+ +S+ GD V +A+ + + ++ + S D Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873 Query: 780 SVEGNISEERCQELKLKE 797 + + + E Sbjct: 874 DRAVDTAGNDMKPEDNGE 891 >gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7] gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7] Length = 836 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 354/899 (39%), Positives = 532/899 (59%), Gaps = 93/899 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + + M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ Y Sbjct: 2 DEYNLLNQDVESIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA G V+G+YHPHG+A++YDAL R+AQ +SLR L++G GNFGSVDGDPPAA RYT Sbjct: 62 RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ KDTVDF+ NYD QEP VL +R+PN+L NG GIAVGMATNIP Sbjct: 122 EAKMAKMAVNMLTDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G VI NPD LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I +R Sbjct: 182 PHNLHEVIEGMKIVIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R IVVTEIPY VNKA ++E IA LV++KR+ I DLRDE+ R G R+V Sbjct: 242 SKTSIEEIK-GRNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIV 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A+ V+LN+L+ YT LQ V ++AL P+ TL IL+ ++ F+ V+ R Sbjct: 301 IELKKDANPQVVLNKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++R H+L GL IA+ N+DEV+ I++ S + A+++L R Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTR----------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++VQ I ++ L RLTG+ R I +EL + + + DIL Sbjct: 410 ---------------FGLTDVQADHIAQMTLGRLTGMERQKIIDELAEITATVADLEDIL 454 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R+ II +E+ +++++ RRT+I +++ ED I E+ VVT +++GY+KR+ Sbjct: 455 ANEQRVFDIIIEEVEAIQEKFGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+SVY+AQ RGGKG +G+ R++D +T++ + S+H ++LF ++ G YK K + LP GS Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSK 574 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RG + N+L L+ I ++ + + ++ Y+V TK G ++R LS + + ++ Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKVEDFD---DDKYIVMVTKRGKIKRTPLSAYKNVRKN 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ LD DEI V +N++L+ T G +R + +RV + R + GVR I L + Sbjct: 632 GLIAIGLDEGDEIAGVRLTGGQNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+SMA + Sbjct: 691 GDYVVSMARIR------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + +LTVSE G G+R + ++ I +R G G+ G + + V++ D Sbjct: 702 ----EGATVLTVSETGLGRRVALENYPIRHRGGHGVLNYK------NGEVCGIKVVDEED 751 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 II++S G +IR+ +I + R ++GV + A + +VV+ R +E DEAE E Sbjct: 752 DIIMISSDGIVIRLRACDISVMGRYSRGVRLMKVAGENKVVTFTR---TEHDDEAEIAE 807 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 13/250 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + +V V+ G +KR PLS Y+ R+ G + + + D + + + +L Sbjct: 600 EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNG--LIAIGLDEGDEIAGVRLTGGQNELL 657 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + + S A + + L +G+ V+ Sbjct: 658 IATHNGMAIRISENDVRVMSRTA---HGVRAIKLREGDY------VVSMARIREGATVLT 708 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 ++ G RR L ++ +R G + + E+ ++ +E+DI++ + G +R Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGVLNYKNG-EVCGIKVVDEEDDIIMISSDGIVIRLRA 767 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 I V GR S GVR + +A ++V++ H D + + E Sbjct: 768 CDISVM-GRYSRGVRLMKVAGENKVVTFTRTEHDDEAEIAEVEKASEEDILKAQEEEKAE 826 Query: 771 EITSLKNDSS 780 + Sbjct: 827 VLEEDTVAED 836 >gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] Length = 816 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 362/890 (40%), Positives = 523/890 (58%), Gaps = 89/890 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + VSI+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 2 SERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA RYTE Sbjct: 62 KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 ARMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H LGEV+D + ++ +PD+ + LME + GPDFPTGA I+GR GI+ AY TGRGSI +R Sbjct: 182 HQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITLRA 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +E I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R+VI Sbjct: 242 KAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E++R SA V+LN LY+ T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ RR Sbjct: 302 EVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIVIRRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA RAH+L GL IA+ +LDEV+ +IR S + A+ LM + Sbjct: 362 TQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTK------------ 409 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL RLTGL R+ I E L I IL+ Sbjct: 410 --------------FQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILA 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++L II+ ELL +K++ + RRT IV G ++DED I RE++VVT++H GY+KR+ Sbjct: 456 DEQKVLQIIRDELLEIKEKFNDYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRL 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S YR+QRRGG+G G+ ++DFV L I STH VLFF++ G VYK K + Sbjct: 516 PVSTYRSQRRGGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYE------ 569 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 + + R +P + + + + Sbjct: 570 ------------IPEFSRTAKGIPIVNLLNIEKDEVI----------------------N 595 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA++ D + TTK G R P+S+ RN G+ I L + Sbjct: 596 TVIAIEQFREDAF-----------LFFTTKQGIAKRSPLSSFANI--RN-HGLIAIHLHE 641 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD++IS V D + M + + T+ + + E Sbjct: 642 GDELIS---VKLTDGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSGDEVVGM 698 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E ++ IL V+ G+GKRT + ++RI +R GKGI+ ++++ N G +VAV V + Sbjct: 699 ESLNGDEEILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GDVVAVKTVTGEE 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERIR 898 ++L++ G +IR+ V++I I R T+GV + ++ E V +V ++ Sbjct: 757 DLMLMTASGVMIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVATVAKVP 806 >gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] Length = 826 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 364/890 (40%), Positives = 537/890 (60%), Gaps = 91/890 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + S++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + + KY Sbjct: 6 NNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSFGAKY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP Sbjct: 126 EARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN E+++G A+++NP+I L +ME I+ PDFPTG +I G+ GI +AY TGRG I +R Sbjct: 186 PHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIEK G+R+ IV+ E+PYQVNKA ++E +A LV++K I ++++RDESDR G RVV Sbjct: 246 AKTHIEK-KGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRDGMRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ TS+Q+ F + M+++ +P F LI ILK F+ R+ +++R Sbjct: 305 IELKRDAISEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGLIDILKHFINHRKTIIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL A+ +D+V+R+IR S E A+ L+ Sbjct: 365 RTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSE----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SE+Q +I+ +RL RLTGL + I NEL L I+ IL Sbjct: 414 ---------------FDFSEIQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S L GII +E V T RRT I + D++ ED I E MVVT++H GY+KRV Sbjct: 459 KSEDVLHGIIAEEFDEVLTTYTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ Y Q+RGGKG++ V ++DF+ + F +TH ++LF + G ++ KV+R+P GS Sbjct: 519 PLASYEKQKRGGKGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I +I+P + + +VF TK+G V+R LS+F I + Sbjct: 579 TAKGKAVVNLINLQADEQIQSIIPTTDFS---EDKSLVFFTKNGIVKRTNLSEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD D +++ + + + + TKL QC++F I R GR++ GVRGI Sbjct: 636 GVRAIVLDDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTRE-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ I+ D Sbjct: 695 HEGDEVVDANIIASDD-------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVN 848 Q IL V+EKG GKRT + ++R++NR G G+ A ++ + G +V V+ Sbjct: 711 --------QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYIVGCLMVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ ++ ++ G +IRV + I +SR T GV I + VVS+ R Sbjct: 761 ESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDEVVSISRCP 807 >gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] Length = 1003 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 353/888 (39%), Positives = 512/888 (57%), Gaps = 33/888 (3%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + K VKC Sbjct: 105 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 164 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ISG+ G YHPHG + IY L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R Sbjct: 165 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 224 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A +LDDL DTVD+ P YD + EP VL +++PN+L+NG GGIAVGMAT+IP HN Sbjct: 225 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 284 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV D + +I+ PD +D L EII GPDFPTG +I GR G++ Y TGR ++V+R Sbjct: 285 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 344 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313 IE+ G+R +IVVTEIPYQ + ++EKIA LV RI I+ +RDESD ++ R+V+E Sbjct: 345 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 404 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG DVILNQLY+++ LQ FS+ +AL KP TL +L F+ R V+ RRT Sbjct: 405 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 464 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 ++LL +AR R H + GL +A+AN+DE+++ IR S A+ LM + AS ++ + Sbjct: 465 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 524 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + G + L+ VQT IL +RL +L L ++ + E L EI + +DIL Sbjct: 525 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 584 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550 S SR+ GIIK++L +K RRT I +++ ED I E MVV++SH GY+KR Sbjct: 585 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 644 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P SVY QRRGGKG G +ED + LF+ STH +LFF++ G V +KV+ +P + Sbjct: 645 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 704 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+A++N+L + +GE+I + + +V TK G V++ L + + R Sbjct: 705 RDAKGRAIVNLLQMEEGEQIAECLAVRDFN--QPGHTIVMTTKSGLVKKTPLEQYSRPKR 762 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+KL DE++ ++I++ T G +RF S R GRN+ GV+GISL Sbjct: 763 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSGVKGISLV 821 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ M + + ++ +E ++ + Sbjct: 822 GDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEA------ 875 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + G S +R R GKG+R SK N G ++ + VND+ Sbjct: 876 ------------ATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 915 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D++ L++ KG L R+ +I + R T+GV I + + + +++V R+ Sbjct: 916 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 963 Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D +V + G VK+ PL Y +RGG + +R+ D + D +V ++ Sbjct: 732 DFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGG--IIAIKLREGDELVDAAVVGPGDEII 789 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV- 649 +S G + + G I+++ + + P + N Y Sbjct: 790 MVTSDGMAIRFRESDSRPMGRNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKR 849 Query: 650 --FATKHGNVRRNKLS-----------------DFIQINR--SGKIAMKL-DSRDEILSV 687 F +V + R G +K +++ + Sbjct: 850 TPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGI 909 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++++ L T G+ R I V GRN+ GVR +++ +GD++I++ V + Sbjct: 910 ARVNDDDELFLMTAKGKLQRISAGDINVI-GRNTQGVRIMNVDEGDELIAVVRVPAEENA 968 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 + ++ E + D++ E Sbjct: 969 EEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 1003 >gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1] gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2] gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2] gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1] gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1] gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2] gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1] gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2] gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1] gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2] gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4] gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3] gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1] gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1] gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1] gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2] gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1] gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2] gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2] gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3] gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2] gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1] gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2] gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3] gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1] gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2] gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2] gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3] gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2] gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1] gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1] gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2] Length = 891 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y + R+ G ++D + S VL S G + Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + + + + ++ D ++ +V AT G +R + Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754 Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ Q R G AM L ++ ++ ++I+ GQ R +S + GR Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +++GV+ +S+ GD V +A+ + + ++ + S D Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873 Query: 780 SVEGNISEERCQELKLKE 797 + + + E Sbjct: 874 DRAVDTAGNDMKPEDNGE 891 >gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] Length = 806 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 355/892 (39%), Positives = 548/892 (61%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++ Sbjct: 2 TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K AR+ GEVMGKYHPHG+ AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA R Sbjct: 62 KYSKSARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE++ R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE KR A+ +++LN LY+YT +Q+ F + +AL P+ TL ++ ++ +E VV Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V + Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 F+ +SE G+GK+T ++ NR GKGIR ++K + G + + Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900 D+I+L+S + +IR+ I SR+T GV++ +T K + +V+V + E Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%) Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753 T G R A +V R GV + + GD + M ++ Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 +K + I +L + E + K +QFI+ +++KG K+TS Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622 Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + R + GI A + L+ V V N+++I+V+ KG ++ V+++ Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901 R SR GV + KD+ V+S + ++++E Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705 >gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98] Length = 821 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 353/839 (42%), Positives = 518/839 (61%), Gaps = 35/839 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K + LL D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NP+I + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R IE+ + R+ I+VTEIPYQVNKA ++EKIAELVR+K+I I DLRDESDR+G Sbjct: 242 ITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 LRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FALSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +L+F++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++ E + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLEVDKDEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L + D V+ M IV + + Y K + I + N + G + Sbjct: 692 ITLDEDDHVVGMEIVEENMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKL 751 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E+ I+ ++ G R R+ +G+R + E+ + Sbjct: 752 VAVKSV---TGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVAKA 807 >gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] Length = 886 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 373/846 (44%), Positives = 525/846 (62%), Gaps = 19/846 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYDG+ P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+IDNP+I +D LME I GPDFPTGA+I GR GI AY TGRG I +R Sbjct: 186 NLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAIINGRAGILQAYRTGRGRIYVRAQ 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E RE IV+ EIPYQVNKA ++EKIAELV+EK+I I+++RDESD+ G RVV+ Sbjct: 246 AEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVV 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +V+LN LY T LQ++F +N+VAL +P+ L +L+ FV R EVV RR Sbjct: 306 EIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLNLKELLEYFVKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R HVL G A+A+AN+DEV+ +I+ SP P AR ++ R W + + +D Sbjct: 366 TVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLD 425 Query: 433 LIDDSSYTIG---------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +++ DG+ YLS VQ +AIL+LRL RLTG+ D + E I+ Sbjct: 426 RAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I L+IL + RL+ +I++EL + ++ RRT I + + D+ ED I ED VVT+S Sbjct: 486 IAGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL Y+AQRRGG G++ ++DEDFV L I +TH +L F+S+G V+ KV Sbjct: 546 HGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKVFWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P+ Q+RG+ ++N+L L +GERIT+I+P E + ++ ++ AT G V++ LS Sbjct: 606 YQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFD---DDHFIFMATADGTVKKTPLS 662 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + G A+ L D ++ DI+L T G+ RF +R GR S G Sbjct: 663 QFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSM-GRVSRG 721 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ +A VI+M + + + + S Sbjct: 722 VRGVRMADDVSVIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSERN 781 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 Q + E I+ +S +G RT + + +S R+ +G+R V + +V Sbjct: 782 GCLVGATQVFEGDE--IMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGE---HIVG 836 Query: 844 VFPVND 849 + +++ Sbjct: 837 LERIDE 842 Score = 80.6 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 6/161 (3%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 A Y E + + + R + + ++ ++++ ++L +E ++T+S Sbjct: 487 AGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTISH 546 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+ K ++ R G G AT V + + L N +D ++ + G + + Sbjct: 547 GGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHL---LIANTHDYLLCFTSVGKVFWL 603 Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 V +I +A R ++G V + + ER+ S+ +RE + Sbjct: 604 KVYQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFDDD 644 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 15/257 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PLS + R G +V D T + ++ Sbjct: 641 FDDDHFIFMATADGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAI--TDGTKDIILL 698 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 +S G + + +RG + R+ + V+ + Sbjct: 699 TSAGKAARFSEENVRSMGRVSRGVRGV---------RMADDVSVIAMVVPEEGGKVLTVS 749 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFP 709 ++G +R +++++ R G IAM++ R+ + + ++I+L + G VR Sbjct: 750 ENGFGKRTEVTEYPAKGRGSQGVIAMQMSERNGCLVGATQVFEGDEIMLISNQGTLVRTR 809 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +GRN+ GVR I + +G+ ++ + + + + Sbjct: 810 ADEV-SLSGRNTQGVRLIRVKEGEHIVGLERIDEPPVPEAVEGGEESAVVENTADANEAN 868 Query: 770 EEITSLKNDSSVEGNIS 786 + Sbjct: 869 VNAPDVSGADEDATGDD 885 >gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1] Length = 902 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 507/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP +ARG + +LS E+I +M + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGREARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 7/247 (2%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y + R+ G ++D + S VL S G + Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + + + + ++ D ++ +V AT G +R + Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754 Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ Q R G AM L ++ ++ ++I+ GQ R +S + GR Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +++GV+ +S+ GD V +A+ + + ++ + S D Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873 Query: 780 SVEGNIS 786 + + Sbjct: 874 DRAVDTA 880 >gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] Length = 808 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 349/889 (39%), Positives = 512/889 (57%), Gaps = 85/889 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ MM G+ N K+ K Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+++IYDA+ R+ Q W++R ++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A LL DL K+T+ +PNYD + +EP VL A PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID P++ L +ME ++GPDFPTG I + GI++AY TG S+ +RG + Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRIS-KQGIQDAYTTGHASLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 IE+ +R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR + R+VIE Sbjct: 242 RIEE-KNNRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA ++LNQLY+YT LQS F+V +++ +P LI ++ F+ R +VV RRT Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNGEPRVLPLIDTMRYFLDHRRDVVTRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA +RAH+L GL A+ ++DEV+ +IR S AR LM R Sbjct: 361 QYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMAR------------- 407 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q +AIL++RL RL GL R+ + +E + L I + IL Sbjct: 408 -------------FELSEPQAQAILDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGD 454 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L IK+E+ ++D RR+ I D+ ED I EDMV+T++ GY+KR L Sbjct: 455 EKLLWREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTTL 514 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG+G G +R+ED T +F+ STH +LFF+ G ++ EK++ LP + A Sbjct: 515 DAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARDA 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G + N+L I VFATK+G V+R ++D+ I +G Sbjct: 575 KGSHIRNLLP--SLRDDENIASVQSIRGFEEEGSFVFATKNGMVKRTLITDYGNITSAGL 632 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++SV +DI+L T+ G+ +RF +R GR + GV GI L D Sbjct: 633 IAINLQEDDELISVGIVKNGSDIVLATRGGKAMRFAADEVRD-TGRATQGVIGIRLKGDD 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SMA+V Sbjct: 692 RVVSMALVP--------------------------------------------------- 700 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L +SE G GKRT D+ R G+G+ DV++ + G LV + V+ +++ Sbjct: 701 ADTESELLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTE--KTGRLVTLARVDGGEEL 758 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 ++++ G +IR V E+R+ R +GV + + + +RV+S IR+ + Sbjct: 759 MVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKEDE 807 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 56/260 (21%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T+ G ++R L + +R G+ + KL D V + + +L T G+ Sbjct: 500 VITMTEAGYLKRTTLDAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRL 559 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 I + A R++ G Sbjct: 560 FHEKIYDL-PEAARDAKG------------------------------------------ 576 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824 I +L + NI+ + +E + ++ G KRT D+ I++ Sbjct: 577 ----SHIRNLLPSLRDDENIASVQSIRGFEEEGSFVFATKNGMVKRTLITDYGNITS--- 629 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 G+ A ++ + L++V V + I+L + G +R +E+R RAT+GV+ Sbjct: 630 AGLIAINLQE---DDELISVGIVKNGSDIVLATRGGKAMRFAADEVRDTGRATQGVIGIR 686 Query: 885 TAKDERVVSVERIRESEIVD 904 D+RVVS+ + + Sbjct: 687 LKGDDRVVSMALVPADTESE 706 >gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2] Length = 891 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S D+ V + E + +E ES E Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G ++D + S VL Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + P R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ D V +A+ + + ++ + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGD 863 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797 S D + + + E Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891 >gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] Length = 822 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 347/893 (38%), Positives = 538/893 (60%), Gaps = 85/893 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + + + V I+ EM+ ++L Y+++VI+ RA+PD+RDG+KPVHRRIL M Q+G+ Sbjct: 1 MEEENKRYDYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R L++G GNFGS+DGD Sbjct: 61 TSGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K + ++ D+ KDTVDF PNYDG EPVVL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL E + AV+DNPDI + LME+I+GPDFPTG +ILGR GI+ A+ TGR Sbjct: 181 MATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIILGRKGIRQAFETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GSI+IR +E+ + ++QI+ EIPYQVNKA ++ K+A L+R+K I + L DES+R Sbjct: 241 GSIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+V+ELK+ A +VILNQL+R T LQ+ F +NM+AL +P++ L I+ ++ + Sbjct: 301 EGIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENGRPKQLPLKDIIHDYIDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +VVVR+T++ L KA+DRAH+L GL IA+ ++DEV+ +IR S Sbjct: 361 VDVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSK----------------- 403 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ + LS +Q +AIL ++L RL+GL RD I NE L + I+ Sbjct: 404 --------KDEAGLSQDLCDAFGLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIE 455 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL++ R+L II+ +L + + RRT I + +DMEDED I ED+++T++ Sbjct: 456 DLKDILANHDRVLQIIRDDLNEIDQKYGDERRTEISDASVDMEDEDLIPVEDVIITLTES 515 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR + YRAQ RGG+G + + +ED + + +STH +L F+ G VY+ K + Sbjct: 516 GYIKRQLVDTYRAQNRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYN 575 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS ++G ++N+++L +GE++ ++ P+D+ + ++F TK+G V+R +S+F Sbjct: 576 VPSGSRTSKGIPIVNLMTLEKGEKVNVLVAVPKDD---ESETLLFVTKNGIVKRTSVSEF 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 INR+GKIA+ L DE+ V+ T +++++++ G+ VRF +R+ GR++ GV Sbjct: 633 ENINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIM-GRSASGVL 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G + G +V+ A+ D Sbjct: 692 GFN-CDGSEVVGAALSSEGDT--------------------------------------- 711 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L VSE G+GKR+ D+R+++R KG+ ++++ + G L+ + Sbjct: 712 --------------VLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITE--KTGKLMCMR 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + ++V+ G +IRV + + I R T+GV + + D +V + + Sbjct: 756 AVTGKEDAMIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAKVTRMTLVD 808 >gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099] gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099] Length = 846 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 355/900 (39%), Positives = 510/900 (56%), Gaps = 84/900 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + E + + +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSSDVPDPTDVEARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV + K + I GE MG YHPHG++AIYD L RMAQD+S+R L++GQGNFGS+ Sbjct: 61 HEMGVTSRSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE R+ + LL+D+ KDTVDF NYD QEP VL + +PN+LVNG Sbjct: 121 DGDPAAAPRYTEARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TNIP HNLGEV+D + +ID+PD ++ LME ++GPDFPTGA I+GR I +A Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R +E+ RE+IV+TE+PYQ NKA ++E+IAE V E I I+DLR Sbjct: 241 YKTGRGRIRVRAEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V+E KRGA+ +V+ N+L L+ F V +AL +P+ +L L+ Sbjct: 301 DESDRDGVRIVVECKRGANVEVVKNKLLE-NHLEKTFGVINLALVDGQPQVLSLKETLEE 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A R EVV RR++Y L +A DRAH+L G AV N ++VV +IR S + A+ L + Sbjct: 360 YIAHRREVVRRRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE- 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S Q I+ ++L LT + +I +E + Sbjct: 419 -------------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDV 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI+ IL S LL +IK EL +KDE D RRT I+E + ED I E++ V Sbjct: 454 QAEIERLTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ YVKR+P+S + Q RGGKG G ++++D V +F +TH +L F++ G VY+ Sbjct: 514 VMTEDDYVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQ 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P ARGK+ +NIL L+ GE IT I+ ++ +V AT+HG V+R Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFG---DDEFVTMATRHGYVKRT 630 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 S+F I +G IA L DE++ VE D+++ ++ G +RF +R GRN Sbjct: 631 AGSEFDNIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAM-GRN 689 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L D V + D Sbjct: 690 ARGVNGIDLQGDDAVAGLVATDEGD----------------------------------- 714 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 EQ +LTV++ G+GKRT ++R +R GKG+ + N G Sbjct: 715 ----------------EQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERN--GP 756 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + V+ +DQ++++S++G ++R V+EI R T GV++ + V SV+ + + Sbjct: 757 VTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAA 816 >gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1] Length = 891 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y + R+ G ++D + S VL S G + Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + + + + ++ D ++ +V AT G +R + Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754 Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ Q R G AM L ++ ++ ++I+ GQ R +S + GR Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +++GV+ +S+ GD V +A+ + + ++ + S D Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGEVVRRSDTVDD 873 Query: 780 SVEGNISEERCQELKLKE 797 + + + E Sbjct: 874 DRAVDTAGNDMKPEDNGE 891 >gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1] gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2] gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1] gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1] Length = 891 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S D+ V + E + +E ES E Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G ++D + S VL Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + P R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ D V +A+ + + ++ + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATKAQSGD 863 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797 S D + + + E Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891 >gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47] Length = 979 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 353/888 (39%), Positives = 512/888 (57%), Gaps = 33/888 (3%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + + I DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + K VKC Sbjct: 81 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 140 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ISG+ G YHPHG + IY L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R Sbjct: 141 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 200 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A +LDDL DTVD+ P YD + EP VL +++PN+L+NG GGIAVGMAT+IP HN Sbjct: 201 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 260 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV D + +I+ PD +D L EII GPDFPTG +I GR G++ Y TGR ++V+R Sbjct: 261 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 320 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313 IE+ G+R +IVVTEIPYQ + ++EKIA LV RI I+ +RDESD ++ R+V+E Sbjct: 321 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 380 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG DVILNQLY+++ LQ FS+ +AL KP TL +L F+ R V+ RRT Sbjct: 381 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 440 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 ++LL +AR R H + GL +A+AN+DE+++ IR S A+ LM + AS ++ + Sbjct: 441 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 500 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 + G + L+ VQT IL +RL +L L ++ + E L EI + +DIL Sbjct: 501 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 560 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550 S SR+ GIIK++L +K RRT I +++ ED I E MVV++SH GY+KR Sbjct: 561 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 620 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P SVY QRRGGKG G +ED + LF+ STH +LFF++ G V +KV+ +P + Sbjct: 621 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 680 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+A++N+L + +GE+I + + +V TK G V++ L + + R Sbjct: 681 RDAKGRAIVNLLQMEEGEQIAECLAVRDFN--QPGHTIVMTTKSGLVKKTPLEQYSRPKR 738 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+KL DE++ ++I++ T G +RF S R GRN+ GV+GISL Sbjct: 739 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSGVKGISLV 797 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ M + + ++ +E ++ + Sbjct: 798 GDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEA------ 851 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + G S +R R GKG+R SK N G ++ + VND+ Sbjct: 852 ------------ATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 891 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D++ L++ KG L R+ +I + R T+GV I + + + +++V R+ Sbjct: 892 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 939 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D +V + G VK+ PL Y +RGG + +R+ D + D +V ++ Sbjct: 708 DFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGG--IIAIKLREGDELVDAAVVGPGDEII 765 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV- 649 +S G + + G I+++ + + P + N Y Sbjct: 766 MVTSDGMAIRFRESDSRPMGRNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKR 825 Query: 650 --FATKHGNVRRNKLS-----------------DFIQINR--SGKIAMKL-DSRDEILSV 687 F +V + R G +K +++ + Sbjct: 826 TPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGI 885 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++++ L T G+ R I V GRN+ GVR +++ +GD++I++ V + Sbjct: 886 ARVNDDDELFLMTAKGKLQRISAGDINVI-GRNTQGVRIMNVDEGDELIAVVRVPAEENA 944 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 + ++ E + D++ E Sbjct: 945 EEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 979 >gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449] gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449] Length = 824 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 355/901 (39%), Positives = 531/901 (58%), Gaps = 89/901 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ + + Y Sbjct: 6 EDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPRRPYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ A+ +L D+ KDTV+F PNYD + EP VL R+PN+LVNG GIAVGMAT+IP Sbjct: 126 ARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMATSIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H + E++D + VID D++ L++I++GPDFPTG +I G+ GI AY TGRG I +R Sbjct: 186 HRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIYGKAGILEAYRTGRGRIRVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 HIEKT ++ IV+ E+PYQVNKA ++E+I+EL +EK I I+++RDESDR+G RVVI Sbjct: 246 KVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREGIRVVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T+++S F + ++A+N +P+ F L+ +L+ F+A R+ +++RR Sbjct: 305 ELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + L KA+ RAH+L GL IA+ N+DEV++ IR S + + A+ L+ + Sbjct: 365 SIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSK------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AILE+RL RLTGL RD I E L +I IL Sbjct: 413 --------------FKLSELQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILK 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L I+K+ELL +K++ T RRT+I E ++ ED I E +VVT+SH GYVKRV Sbjct: 459 SEDKLKSIVKEELLEIKEKFSTKRRTQIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVL 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L Y Q RGGKG+ D+DF+ F+ +TH +++F ++ G +Y KV+++P Sbjct: 519 LKTYEKQNRGGKGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N+++L E+I + + + +VF TK+G V+R L ++ I G Sbjct: 579 AIGKAVVNLINLQADEKIMATITTTDFN---EDKSLVFFTKNGVVKRTNLKEYGNIRSIG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ LD DE+++ ++ + T G C+RF + +R GR S GV GI Sbjct: 636 VRAINLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELREI-GRVSRGVTGIKFKA 694 Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI+ + + Sbjct: 695 SEDCVIAATTIANDTDK------------------------------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LTVSE+G GK+T + ++R+ +R+GKG+ ++ G LV+V +ND Sbjct: 712 ---------LLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPR--TGKLVSVVNINDE 760 Query: 851 D-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ G +IRV IR A R T GV I + D++V + ++ Sbjct: 761 NMDLMVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVG-DDKVAYANVCPKEPKEEDINDE 819 Query: 910 E 910 E Sbjct: 820 E 820 >gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1] gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1] gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3] gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1] gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3] gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2] gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1] Length = 891 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDEA--ESTE 910 S + V + E + +E ES E Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVAYESVE 850 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ L Y + R+ G ++D + S VL S G + Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 P R + + + + + ++ D ++ +V AT G +R + Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754 Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ Q R G AM L ++ ++ ++I+ GQ R +S + GR Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 +++GV+ +S+ GD V +A+ + + ++ + S D Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVAYESVETVEGDATQAQSGGVVRRSDTVDD 873 Query: 780 SVEGNISEERCQELKLKE 797 + + + E Sbjct: 874 DRAVDTAGNDMKPEDNGE 891 >gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994] gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994] Length = 830 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 355/889 (39%), Positives = 533/889 (59%), Gaps = 89/889 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I ++I D +++SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + KY Sbjct: 6 DNSEINDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+G+YHPHG+ ++YDAL RMAQ +++R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A LL DL KDTVD NYDG+ QEP VL R PN+L+NG GIAVGMATNIP Sbjct: 126 EARMTRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN EV+ V ++DNP+ L +M+ I+ PDFPTG I G+ GI +AY TGRG I +R Sbjct: 186 PHNPNEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIYGKKGILDAYETGRGRIRVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIEK +++ IV+ E+PYQVNKA ++E IA+LV++K I I+++RDESDR+G RVV Sbjct: 246 AKTHIEK-KSNKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ F + M+++ +P FTL+ +L F+ R+ V++R Sbjct: 305 IELKRDAMSEIVLNNLYKSTNMETTFGIIMLSVFNQEPRVFTLLEMLGHFINHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL A+ +++ ++++IR S + ETA+ L++ Sbjct: 365 RTIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEE----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S +Q +AIL++RL RLTGL RD I NEL + I+ IL Sbjct: 414 ---------------FGFSPIQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S L GIIK+E + + ++ + PR T I + D+ ED I E MVVT+SH GY+KRV Sbjct: 459 RSEEVLKGIIKEEFVELVEQYNIPRVTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ Y Q RGGKG+ V D+DF+ + +TH +++F + G ++ KV+++P GS Sbjct: 519 PLAAYEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I +I+P + + +VF T++G V+R L++F I + Sbjct: 579 TAKGKAVVNLINLEADEKIRSIIPTTDFD---EKKSLVFFTQNGIVKRTALNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD D +++ T+E + + TK QC++F I R GR++ GVRGI Sbjct: 636 GVRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTRD-QGRSTRGVRGIKFK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD V+ I+ Sbjct: 695 IEGDVVVDANII------------------------------------------------ 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 K E+ IL VSEKG GKRT++ ++R++NR+G G+ A ++ +V V++ Sbjct: 707 ----KSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGT-TVVGCVMVDE 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++ ++ G +IRV + I + R T GV I + V S+ R Sbjct: 762 TMDLMALTKAGKMIRVDMQTIAKSGRNTSGVYIVK---GDDVASISRCP 807 >gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39] gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183] gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39] gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae] gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183] Length = 834 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 341/901 (37%), Positives = 522/901 (57%), Gaps = 91/901 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +++ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+ + K Sbjct: 3 NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + ++ NP +D +++++ GPDFPTG +I G GI++ Y TGRG I + Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKV 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ E I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G R Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+E+K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + +E Q AILELRL +LTGL + I+ E L +I Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +LS + II+ EL + RRT I + ED I E +++T+S YV Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE + I+ + N ++ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ + + E ++L T LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V+S IV Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 PV D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E D Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817 Query: 905 E 905 E Sbjct: 818 E 818 >gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51] Length = 828 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 363/913 (39%), Positives = 551/913 (60%), Gaps = 95/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V+ NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL G++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVER 896 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVVYANS 809 Query: 897 IRESEIVDEAEST 909 + E + E++ Sbjct: 810 CPKEEEPENLENS 822 >gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] Length = 876 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 351/909 (38%), Positives = 512/909 (56%), Gaps = 95/909 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G ++ Sbjct: 24 DHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRS 83 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA RY Sbjct: 84 FNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRY 143 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMATNI Sbjct: 144 TETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNI 203 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL EV +G + NP + LM I+GPDFPTGA ILG GI++AY TGRG Sbjct: 204 PPHNLREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRG 263 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305 SI +R V ++E+ R +VVTE+PYQ N + KIAEL+++ ++ IADLRDE S R Sbjct: 264 SITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGR 322 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VI LKR AS V+LN LY++T LQ FS NM+A+ P +L ++ +V + Sbjct: 323 TGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQ 382 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 383 MDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME------ 436 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + + E Q +AIL ++L RL L R I++ + L I Sbjct: 437 --------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIA 476 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544 E I++S +R II +EL + + RRT+I+ DM ED I E++VVT++ Sbjct: 477 EYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITR 536 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K + Sbjct: 537 GGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGY 596 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 L A+G+ + N+L GE I +M E + Y+V AT+ G V++++LSD Sbjct: 597 ELQEAGRDAKGQHIANLLEFQGGEHIAQVMELKSYE---DAEYLVLATRGGMVKKSRLSD 653 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722 + +G IA+ L DE++S T + ++DILL ++ G +RF +R GR++ Sbjct: 654 YDTNRTAGLIAINLREGDEVVSAFTVSDKDDILLVSRNGMSLRFHADDASLRPM-GRSTS 712 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ +GD++IS +V Sbjct: 713 GVTGMKFREGDELISANVVTEG-------------------------------------- 734 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 F+ V+E G+ KRTS ++R+ R+G GI+ + + + GALV Sbjct: 735 ---------------SFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRGALV 777 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V++ D++++V G ++R VNE+ R T GV+ K + ++ V R ++ ++ Sbjct: 778 GGLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQL 837 Query: 903 VD-EAESTE 910 D + E+TE Sbjct: 838 DDSDDETTE 846 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 13/256 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + +V + G VK+ LS Y R G + +R+ D V F VS +L Sbjct: 629 KSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAG--LIAINLREGDEVVSAFTVSDKDDIL 686 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R + + + +G+ + + +V Sbjct: 687 LVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVT------EGSFVFV 739 Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + ++ N G KL ++ +E+++L+ G+ VR Sbjct: 740 VTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVR 799 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GR+++GV KGD +I +A D + +++ G Sbjct: 800 SNVNEV-PAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTEASESSEAPG 858 Query: 768 DTEEITSLKNDSSVEG 783 E + D + G Sbjct: 859 TDNEGEAAAADLTATG 874 >gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029] gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029] Length = 834 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 342/901 (37%), Positives = 523/901 (58%), Gaps = 91/901 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +++ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+ + K Sbjct: 3 NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + ++ NP +D +++++ GPDFPTG +I G GI++AY TGRG I + Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSAYTTGRGKIKV 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ E I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G R Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+E+K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + +E Q AILELRL +LTGL + I+ E L +I Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +LS + II+ EL + RRT I + ED I E +++T+S YV Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE + I+ + N ++ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ + + E ++L T LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V+S IV Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 PV D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E D Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817 Query: 905 E 905 E Sbjct: 818 E 818 >gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] Length = 910 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 349/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%) Query: 1 MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M ++E+ ++ + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+ Sbjct: 23 MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 82 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G ++ Y KCAR +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNF Sbjct: 83 YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 142 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS DPPAA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L N Sbjct: 143 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 202 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233 G GIAVGMATNIP HN+ E+ +G +D+P+ + L+ II+GPDFPTGA ILG Sbjct: 203 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATILG 262 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 GI+ AY TGRG I +R V + E+ R +VVTE+PYQVN + I E VR+ +I Sbjct: 263 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 321 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P Sbjct: 322 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 381 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L ++ +V + EV+ RRT+YL +A +R H+L GL A+ +DE++R+IR S E Sbjct: 382 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGRED 441 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+ + + +VQ AIL ++L RL + R Sbjct: 442 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 475 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L +I + DIL+ R I+ EL + + RRT+I+ +M ED Sbjct: 476 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 535 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E++VVTV+H G++KR + YRAQ RGGKG G +R++D V F+ STH +LFF Sbjct: 536 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 595 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT Sbjct: 596 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 652 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705 + G V++ L+++ + G IA++L + DE++ C +DI+L +K G Sbjct: 653 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 712 Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 ++F +R GR + GV+G+ D++++M +V Sbjct: 713 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 751 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 +Q +L V+ +GF KRT+ ++R+ R+ Sbjct: 752 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 780 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G G++A +++ G+LV V+++DQ++ + G +IR V E++ R T+GV + Sbjct: 781 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 838 Query: 884 STAKDERVVSVERIRESEIVDEAE 907 K + ++S+ R E+ DE E Sbjct: 839 KPDKGDEIISIARNEET-GEDEVE 861 >gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171] gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] Length = 910 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 350/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%) Query: 1 MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M ++E+ ++ + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+ Sbjct: 23 MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 82 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G ++ Y KCAR +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNF Sbjct: 83 YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 142 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS DPPAA RYTECR+ A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L N Sbjct: 143 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 202 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233 G GIAVGMATNIP HN+ E+ +G +D+P+ + L+ II+GPDFPTGA ILG Sbjct: 203 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILG 262 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 GI+ AY TGRG I +R V + E+ R +VVTE+PYQVN + I E VR+ +I Sbjct: 263 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 321 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE S R G R+V+ LKR A V+LN LY+++ LQ F NM+AL P Sbjct: 322 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 381 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 +L ++ +V + EV+ RRT+YL +A +R H+L GL A+ +DEV+R+IR S E Sbjct: 382 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGRED 441 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR +LM+ + + +VQ AIL ++L RL + R Sbjct: 442 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 475 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L +I + DIL+ R I+ EL + + RRT+I+ +M ED Sbjct: 476 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 535 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E++VVTV+H G++KR + YRAQ RGGKG G +R++D V F+ STH +LFF Sbjct: 536 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 595 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + LP GS ++G+ + N+L E I T++ P E Y+V AT Sbjct: 596 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 652 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705 + G V++ L+++ + G IA++L + DE++ C +DI+L +K G Sbjct: 653 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 712 Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 ++F +R GR + GV+G+ D++++M +V Sbjct: 713 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 751 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 +Q +L V+ +GF KRT+ ++R+ R+ Sbjct: 752 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 780 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G G++A +++ G+LV V+++DQ++ + G +IR V E++ R T+GV + Sbjct: 781 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 838 Query: 884 STAKDERVVSVERIRESEIVDEAE 907 K + ++S+ R E+ DE E Sbjct: 839 KPDKGDEIISIARNEET-GEDEVE 861 >gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] Length = 854 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 356/918 (38%), Positives = 521/918 (56%), Gaps = 97/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ E I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSDET---GEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + KCAR+ GEVMG+YHPHG++AIYDAL R+ QDW++R L GQGNFGS Sbjct: 58 YDGGYRPDRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE ++ A ++ D+ K TVDF+ NYDG QEPV+L AR+PN+LVNG Sbjct: 118 GNDGAAAPRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSS 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G + NP + L+ + I+GPDFPTGA ILG G Sbjct: 178 GIAVGMATNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQILGHKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V ++E+ +R +VVTE+PYQ N + KIAELV++ +I I Sbjct: 238 IEDAYRTGRGSITMRAVVNVEEIQ-NRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 ADLRDE S R G R+V+ LKR A A V+LN LY++TSLQ FS NM+A+ P +L Sbjct: 297 ADLRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDGVPRTLSLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +VA + EV+VRRT++LLN+A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 357 AFIRHWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARG 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ + + ++Q AIL+++L RL L R I++ Sbjct: 417 GLI--------------------------DLLGIDDLQVNAILDMQLRRLAALERQKIQD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIV 534 E L +EI E IL+S R I+ +EL + ++ RRT+I+ DM ED I Sbjct: 451 ENAKLELEIAEYNSILASEDRQRTIVSEELAEIVNKFGDERRTQIMLGYDGDMSMEDLIP 510 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 E+MVVT++ GYVKR YR+Q RGGKG G +R +D V F+ +TH +LFF++ Sbjct: 511 EEEMVVTITRGGYVKRTRSDNYRSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTN 570 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 LG VY+ K + L A+G+ + N+L+ E+I ++ + + Y+V ATK+ Sbjct: 571 LGRVYRAKAYELVEAGRDAKGQHVANLLAFQPDEKIAQVLDLKDY---QQSPYLVLATKN 627 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 G V++ +L D+ +G IA+ L DE++S + ++ +D+LL ++ GQ +RF + Sbjct: 628 GLVKKTRLEDYDTNRSAGVIAINLRDEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEA 687 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV G+ + D++++ +V Sbjct: 688 LRPM-GRATSGVTGMKFRQDDELLAANVVTE----------------------------- 717 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++ V+E G+ KRT+ ++R R G GI+ + Sbjct: 718 ------------------------DSYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKL 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + + G LV V D+D++++V + G ++R V E+ R T GV+ K++R++ Sbjct: 754 VE--DRGDLVGALIVQDDDEVLVVMEGGKVVRSNVAEVPAKGRDTMGVIFAKPDKNDRII 811 Query: 893 SVERIRESEIVDEAESTE 910 V R RE + E E Sbjct: 812 EVARNRERGLESEETEDE 829 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 17/250 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L Y R G + +RDED + +VS +L Sbjct: 615 YQQSPYLVLATKNGLVKKTRLEDYDTNRSAG--VIAINLRDEDELVSAQLVSESDDMLLV 672 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + P R + + + Q + + + YV T Sbjct: 673 SRKGQSIRFTATDEAL-RPMGRATSGVTGMKFRQDDELLAANVVT------EDSYVFIVT 725 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVR 707 + G +R + ++ G + +K+ D D ++ ++++L+ + G+ VR Sbjct: 726 EGGYAKRTAVEEYRTQ-GRGGLGIKVAKLVEDRGD-LVGALIVQDDDEVLVVMEGGKVVR 783 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GR+++GV K D++I +A + +E + Q Sbjct: 784 SNVAEV-PAKGRDTMGVIFAKPDKNDRIIEVARNRERGLESEETEDEVPLTEGQTAEGQT 842 Query: 768 DTEEITSLKN 777 +T + Sbjct: 843 ETGTEEAPIE 852 >gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385] gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385] Length = 866 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 337/917 (36%), Positives = 514/917 (56%), Gaps = 94/917 (10%) Query: 1 MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 M++ ++ + ++ + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRRI++ Sbjct: 1 MSDDSGNTGGNDLFDRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYA 60 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M G + YVK AR + MG +HPHG++AIYD L RMAQ WS+R L++GQGNFGS Sbjct: 61 MYDNGYRPERSYVKSARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 120 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D PAA RYTECRL A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG Sbjct: 121 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRT 235 GGIAVGMATNIP HNL E+ +D+ D L+A+ME ++GPDFPT +I+G Sbjct: 181 GGIAVGMATNIPPHNLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDK 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GIK+AY TGRGSI +RGV+ IE+ R IV+TE+PYQVN ++ IAE VR+ +I Sbjct: 241 GIKDAYTTGRGSIKMRGVTSIEEER-GRTIIVITELPYQVNPDNLVSSIAEQVRDGKIAG 299 Query: 296 IADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I+ + DES DR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 ISKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRL 359 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 +L+ +V + +V+VRRT++ L++A RAH+L GL A+ LDEV+ +IR S PE AR Sbjct: 360 DQLLRLYVDHQIDVIVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIAR 419 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 LM + + E+Q AIL +RL +L L R I Sbjct: 420 TGLM--------------------------DLLDIDELQADAILRMRLRQLAALERQKII 453 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 +EL L + I + DIL+ R I++ EL + + RRT+I+ D+ +ED I Sbjct: 454 DELKELELTIADLKDILARPERQRQIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIA 513 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 RE++V T++ GY KR + +YR Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 RENVVATITSTGYAKRTKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTN 573 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VY+ K + LP S ARG+ + N+L GE I ++ E + Y+V ATK Sbjct: 574 FGRVYRLKAYELPEASRTARGQHVANLLEFQPGEHIAQVIQLQTYE---DAPYLVLATKQ 630 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 G V+++KL+D+ G IA+ L+ D ++ + C+ +D+LL ++ GQ +RF Sbjct: 631 GRVKKSKLTDYDSARSGGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDT 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D ++++ +V Sbjct: 691 LRPM-GRATAGVKGMRFRGEDALLALTVVR------------------------------ 719 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ +++ + G+ KRT ++ R G G+ Sbjct: 720 -----------------------EDSYLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKY 756 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 +K + G L+ V+ +D+I ++ G+++R V +IR +SR T GV + K ++ Sbjct: 757 NK--KRGKLIGALVVDQDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELL 814 Query: 893 SVERIRESEIVDEAEST 909 +++R E E + A T Sbjct: 815 AIDRNVEDEGEEHAAKT 831 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 13/259 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y + R GG + + + D + + S + +L Sbjct: 616 QTYEDAPYLVLATKQGRVKKSKLTDYDSARSGG--LIAINLNEGDSLIGAQLCSANDDLL 673 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + + + +G R + Y++ Sbjct: 674 LVSEEGQAMRFTADD-------DTLRPMGRATAGVKGMRFRGEDALLALTVVREDSYLMV 726 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707 AT G +R K+ ++ R G + + Q+++I T G VR Sbjct: 727 ATSGGYAKRTKMEEYPAKGRGGLGVATFKYNKKRGKLIGALVVDQDDEIFCITTDGSVVR 786 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + IR + R ++GVR + L KG +++++ + + + K + Sbjct: 787 SNVKDIRP-SSRQTMGVRLVHLDKGSELLAIDRNVEDEGEEHAAKTAEKGNAPTDPAEPD 845 Query: 768 DTEEITSLKNDSSVEGNIS 786 + + Sbjct: 846 PNDPNADGSDGDGSSDAKD 864 >gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] Length = 869 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 374/916 (40%), Positives = 518/916 (56%), Gaps = 90/916 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 ++ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 DVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR LI+GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 ++K AH LL DL K+TVDF PNYDGS Q P VL R PN+L+NG GIAVGMATNIP HN Sbjct: 127 MKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV GC+A I+N DI +D LMEII GPDFPTGA I GR GI AY TGRG I +R + Sbjct: 187 LKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATINGRAGIVQAYRTGRGRIYVRAKA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 H+E ++E I++TEIPYQ+NKA ++E+IAELV+EK+I I++LRDES + RVVIE Sbjct: 247 HVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTK-DIRVVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG DVILN LY T ++ +F +N+VAL +P+ L +L+ FV R EVV RRT Sbjct: 306 LKRGEIGDVILNNLYAQTQMEGVFGINVVALVDGQPKILNLKQLLECFVRHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P AR L+ R W ++ + ++ Sbjct: 366 IYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + D YLS Q +AILELRL RLTG+ D + +E I Sbjct: 426 AGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVARIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L+IL S +RL+ +I++EL ++ RRT I D+ ED I ED VVT+SH Sbjct: 486 EFLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISHG 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K LS Y+AQRRGG G+ Sbjct: 546 GYAKTQALSDYQAQRRGGTGK--------------------------------------- 566 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR--RNKLS 663 + + + + L + ++ T G V + Sbjct: 567 ---AATSVKDEDFVEHLLIASTHDT-----------------ILCFTNAGKVYWLKVFQI 606 Query: 664 DFIQINRSGKIAMKLDSRDE------ILSVETCTQENDILLTTKLGQCVRFPISAI-RVF 716 G+ + L DE IL V +++ I + T G + P++ R Sbjct: 607 PLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGTVKKTPLTQFARPR 666 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + G+R I L + + ++ A+ D + D + + + + + TS Sbjct: 667 ----TSGLRAIDLEEDNHLVGTAV---TDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRG 719 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 E L ++ +LTVSE G+GKRT ++ R+GKG+ A S+ N Sbjct: 720 VRGIRLAEGYEVISMVLPTEDGKVLTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERN 779 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +V V D D+I+L+SD+GT++R V+E+ ++ R T+GV + E ++ VER Sbjct: 780 --GKVVGAVQVFDGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVER 837 Query: 897 ---IRESEIVDEAEST 909 I + EIVD AES Sbjct: 838 IESIADDEIVDTAESA 853 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 90/243 (37%), Gaps = 15/243 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + G VK+ PL+ + R G + + +++ + + ++ V+ F Sbjct: 639 YDEDHFIFMATANGTVKKTPLTQFARPRTSG--LRAIDLEEDNHLVGTAVTDGNSDVMLF 696 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 SS G + + +RG I R+ + V+ + Sbjct: 697 SSEGKAVRFNENDVRSMGRTSRGVRGI---------RLAEGYEVISMVLPTEDGKVLTVS 747 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R K+ ++ R G IAM+ +++ ++I+L + G VR Sbjct: 748 ENGYGKRTKVDEYATKGRAGKGMIAMQTSERNGKVVGAVQVFDGDEIMLISDQGTMVRTH 807 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + +GRN+ GVR I + G+ ++ + + D S + + Sbjct: 808 VDEV-SVSGRNTQGVRVIKVKDGEHLMGVERIESIADDEIVDTAESASDSPASAQANSEK 866 Query: 770 EEI 772 E Sbjct: 867 END 869 >gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3] gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4] Length = 891 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + + +P+ + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIA+ Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP ARG + +LS E+I +M + + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQRR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910 S D+ V + E + +E ES E Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G ++D + S VL Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + P R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQRRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ D V +A+ + + ++ + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATKAQSGD 863 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797 S D + + + E Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891 >gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2] Length = 852 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 344/925 (37%), Positives = 517/925 (55%), Gaps = 103/925 (11%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + E + V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MADEN--DIGTEINRVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + KC+R+ G+VMG+YHPHG++AIYDA+ R+ Q W++R L+ GQGNFGS Sbjct: 59 FDGGYRPDRNFSKCSRVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSP 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTEC++ A ++ D+ + TVDF+ NYDG QEP VL +R+PN+LVNG Sbjct: 119 GDDGAAAPRYTECKMAPLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G ++ +P+ + +E I++GPDFP GA ILGR G Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATILGRKG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI R V +E+ R +VVT++PY VN + KIA V++ ++ I Sbjct: 239 IEDTYRTGRGSITQRAVVEVEEIQ-GRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGI 297 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 ADLRDES R G R+VI LKR A A V+LN LY++TSLQ FS NM+A+ P +L Sbjct: 298 ADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDSVPRTLSLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 L+ +V + EV+VRRT++ L KA +RAH+L G A+ LDEV+ +IR SP+ + AR Sbjct: 358 SFLRLWVKHQVEVIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARS 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E+Q AIL+L+L RL L R I+ Sbjct: 418 GLM--------------------------DLLEVDEIQANAILDLQLRRLAALERLKIQE 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIV 534 E + +I E IL++ +R I+ +EL + + RRT+I+ D+ ED I Sbjct: 452 EAEKIEQQIAEFKYILATPARQREIVSEELDEIVERYGDDRRTKIMAGFDGDVSMEDLIP 511 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 E++VVT++ GY KR +YRAQ RGGKG G +R +D V F+ STH +LFF++ Sbjct: 512 EEEVVVTITRGGYAKRTQNHLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTN 571 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VY+ K + LP GS A+G+ + N+L+L GE I ++ + E +++ AT+ Sbjct: 572 TGRVYRAKAYELPEGSRDAKGQHVANLLALQPGETIAKVLSIRDYE---EAEFLILATQS 628 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPI 710 G V++ +LS++ G IA+ L DE++S + E+ +L+ ++ G +RF Sbjct: 629 GVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAA 688 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 IR GR + GV G+ D++++M ++ Sbjct: 689 DDDSIRPL-GRVTGGVTGMKFKGDDELLTMDVIQP------------------------- 722 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + F+ V+E G+ KRT ++R+ R G GIR Sbjct: 723 ----------------------------DTFVFVVTEGGYAKRTPVDEYRLQGRGGLGIR 754 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 +++ + G LV V++ +++++V ++G ++R ++E+ R T GVV K+ Sbjct: 755 VAKITE--QRGDLVGGLIVDEGEEVLVVMERGKIVRSNIDEVPAKGRNTMGVVFAKPGKN 812 Query: 889 ERVVSVERIRE---SEIVDEAESTE 910 +R+++V R E E+ +EA+ E Sbjct: 813 DRIIAVTRGPETVVEELDEEADEPE 837 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 85/246 (34%), Gaps = 15/246 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL--FIVSTHTSVL 590 + ++ + G VK+ LS Y + R GG + + IVS+ +L Sbjct: 616 YEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLL 675 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + P R + + + + T+ + +V Sbjct: 676 MISRKGMSIRFAADD-DSIRPLGRVTGGVTGMKFKGDDELLTMDVIQ------PDTFVFV 728 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCV 706 T+ G +R + ++ ++ G + +++ E ++ + ++L+ + G+ V Sbjct: 729 VTEGGYAKRTPVDEY-RLQGRGGLGIRVAKITEQRGDLVGGLIVDEGEEVLVVMERGKIV 787 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R I + GRN++GV K D++I++ + + Sbjct: 788 RSNIDEV-PAKGRNTMGVVFAKPGKNDRIIAVTRGPETVVEELDEEADEPEGEDVEPQTG 846 Query: 767 GDTEEI 772 + E Sbjct: 847 SEDVEE 852 >gi|315452542|ref|YP_004072812.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179] gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179] Length = 806 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 353/890 (39%), Positives = 533/890 (59%), Gaps = 88/890 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y K Sbjct: 4 KIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPYKKS 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R Sbjct: 64 ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + LL DL KDT+DF NYD + +EP +L +R PN+L+NG GIAVGMAT+IP H Sbjct: 124 MAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIPPHR 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E++D + V++NP +L L+EI++GPDFPTG V+ G+ GI AY TGRG I +R S Sbjct: 184 PDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGVVYGKAGILEAYTTGRGRIKVRAKS 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +EK +RE I++ EIPYQVNKA ++E+I+ L ++K + IA++RDESDR+G RVVIEL Sbjct: 244 RVEKH-NNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRVVIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A ++++LN LY+ ++++ FS+ ++A+ +P F L+ +LK F+ R+ VV+RRT Sbjct: 303 KKDAYSEIVLNHLYKSSNMEITFSIILLAIYNKEPRVFNLLELLKLFLVHRKSVVIRRTI 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA+ RAH+L GL +A+ + + V+ +I+ S + + A+ LMQ Sbjct: 363 HELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQ--------------- 407 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T +LSE Q++AIL++RL RLTGL ++ I+ E L +I +IL + Sbjct: 408 -----------THHLSEEQSKAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNA 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L +IK+ELL VK++ TPR+T+I E + ED I EDMVVT+SH GYVKRVPL Sbjct: 457 DKLNALIKEELLEVKEKFSTPRKTQIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLK 516 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 VY QRRGGKG++ ++DF+ FI +TH ++LF ++ G ++ KV+++P A Sbjct: 517 VYEQQRRGGKGKNSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAI 576 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+AL+N++ L GE I +P + + + +VF TK+G V+R +LS F +I G Sbjct: 577 GRALVNLIDLQPGESIKATIPTKDFD---ADKSLVFFTKNGIVKRTELSAFGRIRG-GVR 632 Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L+ D +++ + ++ + + G C+RF + ++R GR + GVRG+ L +GD Sbjct: 633 AIVLEEDDALVTAKIIDSSVQELFMASSKGMCIRFSVESVREM-GRVARGVRGMRLREGD 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI V Sbjct: 692 FVIGAGGVSSD------------------------------------------------- 702 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQ +L+VS KG GK+T + +R R G G+ ++ + G LV + V++ + Sbjct: 703 ---EQKLLSVSSKGIGKQTLAGAYRAQGRGGLGVIGVKITP--KTGHLVGIVSVDEGQDL 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +L++ G +IR+P+ IR R GV + DE VV + E+ Sbjct: 758 MLLTKSGKMIRMPMETIRETGRNASGVKLVQMESDE-VVYASTCPKEEVE 806 >gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] Length = 880 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 380/856 (44%), Positives = 537/856 (62%), Gaps = 33/856 (3%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TV+F PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVDGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 187 LSEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+V EIPYQ+NKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 247 KIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A A+V+LN LY T LQ F +NMVAL+ +P+ L IL AF+ R EVV RRT Sbjct: 307 VKRDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFINHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+ N+D + +IR + P A+ L+ ++W ++ +++ Sbjct: 367 IFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLEQ 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 427 AGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL +I++ELL++KD+ + RRT + E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLREVIREELLAIKDQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + L + AT G V++ KLS+F Sbjct: 607 LPEASRGARGRPIVNLLPLEQEERITAILPVREYE---DGLNIFMATASGTVKKTKLSEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712 + +G IA+KL DE++ V+ N+++L + G+ VRF + Sbjct: 664 SRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKG 723 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRGI L+ GD+V+S+ I + Y K + + Sbjct: 724 VRAM-GRTAAGVRGIKLSAGDKVVSLIIPRGEGEILTVTENGYGKRTAQSEYPTKSRATQ 782 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 S G++ E + I+ +++ G RT + + R+ +G+ Sbjct: 783 GVISIKVSERNGDVIGAIQVETTDQ---IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIR 839 Query: 832 VSKINEIGALVAVFPV 847 ++ + +V + V Sbjct: 840 TTEDEK---VVGLQRV 852 Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 12/233 (5%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ LS + R G + DE DL V+ FS+ G V + Sbjct: 650 TASGTVKKTKLSEFSRPRSAGIIAVKLSDGDELIGVDL--TDGSNEVMLFSAKGKVVRFL 707 Query: 603 VWRLPI----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 +A+ + +G +++ ++ T++G + Sbjct: 708 EEDEETLEDGTIRVKGVRAMGRTAAGVRGIKLSAGDKVVSLIIPRGEGEILTVTENGYGK 767 Query: 659 RNKLSDFIQINRSGKIAMKLD----SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 R S++ +R+ + + + + D ++ + I++ T G VR +S + Sbjct: 768 RTAQSEYPTKSRATQGVISIKVSERNGD-VIGAIQVETTDQIMMITDAGTLVRTRVSEV- 825 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 GRN+ GV I + ++V+ + V D D DE Sbjct: 826 SVVGRNTQGVTLIRTTEDEKVVGLQRVAEPDDDEDEENNITSPSDEGNSESED 878 >gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] Length = 882 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 352/912 (38%), Positives = 513/912 (56%), Gaps = 95/912 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G Sbjct: 27 ENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRP 86 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA Sbjct: 87 DRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAA 146 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMA Sbjct: 147 PRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMA 206 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL EV +G + NP D LM I+GPDFPTGA ILG GI++AY T Sbjct: 207 TNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGTKGIEDAYRT 266 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +R V ++E+ R +VVTE+PYQ N + KIAEL+++ ++ IADLRDE Sbjct: 267 GRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDET 325 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R G R+VI LKR AS V+LN LY++T LQ FS NM+A+ P +L ++ +V Sbjct: 326 SGRTGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWV 385 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 386 DHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME--- 442 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + E Q +AIL ++L RL L R I++ + L Sbjct: 443 -----------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMR 479 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541 I E I++S +R II +EL + + RRT+I+ DM ED I E++VVT Sbjct: 480 MIAEYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVT 539 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GY+KR YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ Sbjct: 540 ITRGGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRA 599 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + L A+G+ + N+L GE I +M E + Y+V AT+ G V++++ Sbjct: 600 KGYELQEAGRDAKGQHIANLLEFQGGEHIAQVMELKSYE---DAEYLVLATRGGMVKKSR 656 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGR 719 LSD+ +G IA+ L DE++S T + ++DILL ++ G +RF +R GR Sbjct: 657 LSDYDTNRTAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPM-GR 715 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GV G+ +GD++IS +V Sbjct: 716 STSGVTGMKFREGDELISANVVTEG----------------------------------- 740 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 F+ V+E G+ KRTS ++R+ R+G GI+ + + + G Sbjct: 741 ------------------SFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRG 780 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ALV V++ D++++V G ++R VNE+ R T GV+ K + ++ V R ++ Sbjct: 781 ALVGGLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQD 840 Query: 900 SEIVD-EAESTE 910 ++ D + E+TE Sbjct: 841 RQLDDSDDETTE 852 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 13/256 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + +V + G VK+ LS Y R G + +R+ D V F VS +L Sbjct: 635 KSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAG--LIAINLREGDEVVSAFTVSAQDDIL 692 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R + + + +G+ + + +V Sbjct: 693 LVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVT------EGSFVFV 745 Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + ++ N G KL ++ +E+++L+ G+ VR Sbjct: 746 VTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVR 805 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GR+++GV KGD +I +A D + +++ G Sbjct: 806 SNVNEV-PAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTEASESSEAPG 864 Query: 768 DTEEITSLKNDSSVEG 783 E + D + G Sbjct: 865 TDNEGEAAAADLTATG 880 >gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925] gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925] Length = 849 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 352/896 (39%), Positives = 522/896 (58%), Gaps = 87/896 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Sbjct: 2 NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G IDNPDI + LM I+GPDFPT +I+G++GI+ AY TGRG +++ Sbjct: 182 PPHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ R +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+ Sbjct: 242 RSKAEIEEEK-GRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LNQLY++T +Q F + M+AL +P+ +L +LK ++ F+EEV+ Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEEVIT 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L+KA RAH+L GL IA+ ++DEV+++IR S AR LM R Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTGL R+ I E L IK I Sbjct: 411 ----------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549 LS +S LL IIK EL +K + RR+ I++G + + ED I +D+V+T++H GY+K Sbjct: 455 LSDKSLLLKIIKDELNEIKVKYGDERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y AQ+RGG+G + +++DFV + STH ++LFF++LG VY+ K +++P Sbjct: 515 RLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +N+++L ++ I Sbjct: 575 GRTAKG---MNLINLIPLDKEEKIQN---------------------------------- 597 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++ ++ ++ +++ TK G + + G+ I+L Sbjct: 598 --------------VIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASI---RKNGLNAINL 640 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+++S + D + + + T+ + E Sbjct: 641 REDDELVSARVTT---GDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVV 697 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E+ + + L VSE G+GKRT + + R GKG+ +S+ + G L+ V D Sbjct: 698 SMEVASENRDFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISE--KTGLLIGARSVED 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D+++L++D G IR+ V++I SR GV + T +E+VV++ ++ SE D+ Sbjct: 756 QDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENEDD 811 >gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] Length = 831 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 375/884 (42%), Positives = 530/884 (59%), Gaps = 89/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYVKC 74 I V I D ++ SYL Y+++VI+GRA+P+ RDGLKPVHRRIL+ M +G+ N KY KC Sbjct: 10 IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I GEVMG YHPHG+ AIYDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE + Sbjct: 70 AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +L D+ KDTVDF PNYDGS +EP +L R+PN+LVNG GIAVGMAT+IP H Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD + I+NP +++ ++ +I GPDFPTG +I GR GI AY TGRG I IR Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGIIHGRQGIIEAYKTGRGRIKIRAKV 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+EKT ++ IVV EIPYQVNKA + E+I L ++K + IA++RDESD+ G R+VIEL Sbjct: 250 HVEKTKT-KDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIEL 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ++++LN LY+ +++++ F + ++A+ G +P+ FTL+ +L F++ R+ +V+RR Sbjct: 309 KREAMSEIVLNHLYKSSAMETTFGIILLAIEGREPKIFTLLELLDIFISHRKTIVIRRII 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR R H+L G IA+ N+DE+V +IR S NPE A+ ELM R Sbjct: 369 FELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q++AILE+RL RLTGL RD I NE L I E IL S Sbjct: 415 ------------FSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ G+IK+ELL V+ + +PRRT I E ++ ED I E +VVT+SH GYVKRV L Sbjct: 463 DKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLK 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGGKG+ D+DF+ F+ +TH +++F ++ G +Y KV+R+P A Sbjct: 523 TYEKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAI 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++N++ L GE+I T + + + +VF TK+G V+R LS++ I +G Sbjct: 583 GKAVVNLIGLQDGEKIMTTITTSDFN---EDKSLVFFTKNGIVKRTNLSEYKNIRNNGVR 639 Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ LD DE++S ++ + TK GQC+RF +IR GR + GV GI Sbjct: 640 AINLDEDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDI-GRVARGVIGIKFKVAN 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VI+ + + Sbjct: 699 DSVIAATTIKGDEDK--------------------------------------------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851 +L++SE G GK+T + + NR GKG+ A ++ N+ G LV+V VND++ Sbjct: 714 -------LLSISELGIGKQTLAGSYSTINRGGKGVIAMKLT--NKTGKLVSVLSVNDSNM 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +++++ G +IRVP+ IR A R T GV I S ++V Sbjct: 765 DLMVLTTSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKVAFAS 808 Score = 82.5 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 99/237 (41%), Gaps = 19/237 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733 + L++ DEI+++ ++ + + RF ++ I + + +R L + D Sbjct: 386 IALENIDEIVALIRASENPE---KAQSELMSRFSLTEI---QSKAILEMRLQRLTGLERD 439 Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 ++ + ++ A+ + + ++ + + ++ S + +E N ++ Sbjct: 440 KIENEYRELVALIAELESILRSEDKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIED 499 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDND 851 L E ++T+S +G+ KR + +R GKG +S + F V N +D Sbjct: 500 LIPNEAVVVTMSHRGYVKRVLLKTYEKQHRGGKG----KISGNTHDDDFIQSFFVANTHD 555 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 I+ ++++G L + V I A R G V + E++ + I S+ ++ Sbjct: 556 TIMFITNRGQLYWLKVYRIPEAGRTAIGKAVVNLIGLQDGEKI--MTTITTSDFNED 610 >gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] Length = 824 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 349/907 (38%), Positives = 513/907 (56%), Gaps = 83/907 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ ++ + +V + +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSSESPDVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + GV + K + I G+ MG YHPHG++ IYDAL RMAQD+S+R L++GQGNFGSV Sbjct: 61 HESGVTSGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE R+ A LL D+ KDTV F+ NYD EP VL + +PN+LVNG Sbjct: 121 DGDPAAAMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TN+P HNLGEV+D + +ID PD + LME ++GPDFPT A I+GR +K A Sbjct: 181 GIAVGMSTNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+E R+ IV+TE+PYQ NK+ ++E+IA+ VR+ ++ I DLR Sbjct: 241 YQTGRGRVRMRAEYHVESNGR-RDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VI+LK+ A+ DV+ N+L + L+ FSV +AL +P+ TL +L Sbjct: 300 DESDRNGVRIVIDLKQKANTDVVENRLLE-SHLEKTFSVINLALVDGEPKVLTLKELLAE 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V+ R+EVV RR+++ L +A DRAH+L G A+ N DEVV +I+ + + + A+ Sbjct: 359 YVSHRKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKE----- 413 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S+ Q I+ ++L LT + DI +E + Sbjct: 414 ---------------------TLKSAFDFSQDQADHIVRMQLGSLTSMEAADIESEYEDV 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ +IL S LL +IK EL +K + RRT +E + DED I ED VV Sbjct: 453 TARIERLEEILGSEQELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVV 512 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 +S Y+KRVP + AQ RGGKG G ++D D V+ +F STH +L F+ G VY+ Sbjct: 513 VLSEGDYIKRVPAETFDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYR 572 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S ARG + +NIL L+ GE I+ ++ + + ++ Y+ AT++G V+R Sbjct: 573 LKVYQVPEMSRTARGTSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRT 632 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + +F I +G IA+ L+ D + VE +D++L ++ G +RF +R GRN Sbjct: 633 SVGEFGNILSTGIIAIDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAM-GRN 691 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L D++ +A V D Sbjct: 692 ARGVRGMDLDAADRIAGVAAVESEDDRS-------------------------------- 719 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +LTV+E G+GKRT ++R +R+GKG+ N G Sbjct: 720 -------------------LLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRN--GD 758 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V+V V D+D ++++S G +I++PV+EI R TKGV I + + V V +R + Sbjct: 759 VVSVDAVGDDDSLVVMSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVS-VRAA 817 Query: 901 EIVDEAE 907 + D E Sbjct: 818 DQADGEE 824 >gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] Length = 855 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 350/919 (38%), Positives = 510/919 (55%), Gaps = 85/919 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I E I V + DEMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTPI-----ERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + KC+RI G+VMG+YHPHG+ AIYD L R+AQ W +R +I GQGNFGS Sbjct: 56 YDGGYRPDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSP 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTEC+L A ++ D+ ++TVDF+PNYDG EP VL +R PN+LVNG Sbjct: 116 GDDPAAAMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSA 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G + +P+ L++ I+GPDFPT +I+G +G Sbjct: 176 GIAVGMATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGTSG 235 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGS+ +R + IE+ + R Q+VVTE+PYQVN +++ KIA+LV R+ + Sbjct: 236 IEDMYRTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGV 295 Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +DLRDES + G R+VIE++R A A V+LN LY++T LQS FS NM+AL P TL Sbjct: 296 SDLRDESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDDVPRTLTLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G + ++ + +V+ RRT+Y L KA +RAH+ GL A+ LD+V+ +IR SP + AR Sbjct: 356 GFITNWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEART 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q AILE++L RL L R I + Sbjct: 416 GLIE--------------------------LLEIDEIQANAILEMQLRRLAALERQKILD 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L I + DIL R I+ EL + D+ RR+RI+ D+ DED I Sbjct: 450 ELAELERMIADFTDILERPERQREIVSTELAEIVDKYGDDRRSRIIPADGDLSDEDLIPD 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR +YR Q RGGKG G +RD DFV LF + H +LFF++ Sbjct: 510 EEVVVTITSGGYAKRTKTDLYRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTA 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP A+G + +LS E+I ++ + E Y+V AT+ G Sbjct: 570 GRVYRAKAYHLPEAGRDAKGGHVAGLLSFQPDEQIAQVLAVRDYE---QAPYLVLATRKG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 V++ +L+D+ ++G IA+ D DE++ E ++D+LL ++ Q +RF Sbjct: 627 LVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQ 686 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV G+ D ++SM ++ A D Sbjct: 687 LRPM-GRATSGVTGMKFRGEDDLLSMTVIRREHAALDAE--------------------- 724 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + ++ TV++ GF K+T ++R+ R G GI+A + Sbjct: 725 ------------------EVADEDKLYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQI 766 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + G LV + D D +I V+ G + R V+ + R T GV D+RVV Sbjct: 767 T--GARGELVGGLVLKDTDDVISVTSGGQVTRSLVSGVNPTGRGTMGVSFVKFKGDDRVV 824 Query: 893 SVERIRE-SEIVDEAESTE 910 ++ R E + V E E + Sbjct: 825 TIARNAEVAADVAEIEEGD 843 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L+ Y + R+ G D++ + V +L Sbjct: 613 YEQAPYLVLATRKGLVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAEL-VGPDDDLLLI 671 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------EDESSWN 644 S + + + P R + + + + + ++ E+ + + Sbjct: 672 SRKAQAIRFRADDEQL-RPMGRATSGVTGMKFRGEDDLLSMTVIRREHAALDAEEVADED 730 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD----EILSVETCTQENDILLTT 700 LYV T G ++ + ++ ++ G + +K E++ +D++ T Sbjct: 731 KLYVFTVTDGGFAKKTPVGEY-RLQGRGGLGIKAMQITGARGELVGGLVLKDTDDVISVT 789 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 GQ R +S + GR ++GV + D+V+++A AD E +A Sbjct: 790 SGGQVTRSLVSGVNP-TGRGTMGVSFVKFKGDDRVVTIARNAEVAADVAEIEEGDPVPAA 848 Query: 761 Q 761 Sbjct: 849 P 849 >gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] Length = 870 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 352/920 (38%), Positives = 517/920 (56%), Gaps = 103/920 (11%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE E E I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTET---PGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++++ KC+R+ G+VMGKYHPHG++AIYDAL R+ QDWSLR L+ GQGNFGS Sbjct: 58 YDGGYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTEC++ A ++ D+ +D VDF+ NYDG QEP VL +R+PN+LVNG Sbjct: 118 GDDPAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSA 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +++PD + LM I+GPDFPT A ILGR G Sbjct: 178 GIAVGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATILGRKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSI +R V +E+ R+ +VVTE+PYQVN + +KIA+LV++ R+ I Sbjct: 238 IEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P ++ Sbjct: 297 ADIRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSID 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +V+ + +V+ RRT++ L KA + H+ G A+ LDEV+ +IR SP+ E AR Sbjct: 357 AFVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARN 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q +AIL L+L RL L R +I + Sbjct: 417 GLME--------------------------LLGIDELQAQAILNLQLRRLAALQRQEIMD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 ++L +I E IL S R I+ +EL +V D+ RRT I+ ++ ED I Sbjct: 451 RHDALEADITELNAILGSPERQRTIVSEELATVVDKFGDERRTHILPFDGEVSIEDLIAE 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR + YRAQRRGGKG G +R++D V F+ +TH +LFF++L Sbjct: 511 EDVVVTITRGGYAKRTRVDAYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNL 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP A+G+ + N+L+ GE+I ++ + E ++V ATK G Sbjct: 571 GRVYRAKAYELPEAGRDAKGQHVANLLAFQPGEKIAQVLDLRDYE---QAEHLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ +L+++ G IA+ L DE+++ + D++L ++ GQ VRF Sbjct: 628 LVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTA 687 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S +R GR + GV G+ D +++M +V Sbjct: 688 SDEALRPM-GRATSGVTGMKFRGDDDLLAMDVVRE------------------------- 721 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS--YDFRISNRSGKG 826 + F+ TV+E G KRT+ ++R R G G Sbjct: 722 ----------------------------DAFLFTVTEGGIAKRTALTVENYRQQGRGGLG 753 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 I+ ++ + N G LV + +D+++++ ++G ++R +E+ R T+GV+ Sbjct: 754 IKVANLPEAN--GDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIFAKPD 811 Query: 887 KDERVVSVERIRESEIVDEA 906 +R+++V R E + D+ Sbjct: 812 TGDRIIAVARNSERHLEDDG 831 >gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551] gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551] Length = 836 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 364/847 (42%), Positives = 528/847 (62%), Gaps = 35/847 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TG+GSI+ Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S ++ I+V E+PYQVNKA ++EKIAEL R+K+I I DLRDESDR G R Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL +P+ L L+ ++ + V+ Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ NLD V+ +IR S + AR LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL+ VK+ + RRT I G +EDED I R+D+V++++H GY+ Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L +++GE + I+ E ++ Y+ F TK G +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDEFV---DDWYLFFTTKQGISKRTPLSSFENI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 SG IA+ L DE++SV+ + D+++ TK G +RF + +R GR + GV+GI+ Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGIT 692 Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+VI M I+ +D + Y K + + + N + G++ Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +C +E+ I+ ++ G R S D R+ +G++ + + + V Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809 Query: 848 NDNDQII 854 D D+++ Sbjct: 810 EDEDEVL 816 >gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551] gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551] Length = 861 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 365/915 (39%), Positives = 528/915 (57%), Gaps = 78/915 (8%) Query: 1 MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M+ +++ + + I EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL Sbjct: 1 MSSDAPDKFQKDAGIAAEVQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M + GV + K + I GE MG YHPHG++AIYDALARMAQD+S+R L++GQGNF Sbjct: 61 YAMNEAGVSARSSHRKSSSIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GSVDGDPPAA RYTE R+ A LL+D+ KDTVDF+ NYD QEPVVL + +PN+LVN Sbjct: 121 GSVDGDPPAAMRYTEARMAPIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GIAVGM+TNIP HNLGEV+D +I+NPD ++ LME ++GPDFPTGA I+G+ + Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIVGKNAV 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 AY TGRG I +R +++ D + IV+TE+PYQ NKA ++E+IA+ V + +I I Sbjct: 241 HKAYKTGRGRIRVRAEFEVDE---DGDNIVITELPYQENKARLIERIADDVNDGKIEGIR 297 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 DLRDESDR G RVV+ELKRGA+ DV+ NQL + L+S F V +AL +P TL Sbjct: 298 DLRDESDRDGIRVVVELKRGANPDVVKNQLLEH-HLESTFGVINLALVDGQPRVLTLKET 356 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 LK ++ R EVV RR++Y L +A DRAH+L G A+ N+D+VV IR S + + A+ L Sbjct: 357 LKEYLDHRREVVRRRSEYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAAL 416 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 D + L T SE Q I+ ++L LT + +I++E Sbjct: 417 RGEMTVEVDGEPL--------------PTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEY 462 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I +IL++ L +IK EL ++KDE D RRT +E + ED I ED Sbjct: 463 EEVQDRIDRLNEILNNPDELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEED 522 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VV V+ Y+KR+PL +RAQ RGGKG G +++ D V+ +F+ STH +L+F++ G Sbjct: 523 VVVVVTEDDYIKRMPLDTFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQ 582 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VYK K +++P S ARGK+ +N+L L+ GE IT ++ D + Y+ AT++G V Sbjct: 583 VYKLKTYQIPEMSRTARGKSAVNLLELDDGEEITAVVNT-ADIEDETDKYLTMATQNGYV 641 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R + F I +G IA KLD DE+ VE +D++L ++ G +RF S +R Sbjct: 642 KRTSVEKFQNILTTGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAM- 700 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GVRG+ L D+++ +A V + Sbjct: 701 GRSARGVRGMKLEGDDELVGVAAVDEDRHN------------------------------ 730 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++LTV++ G+GKR+ +R +R+GKG+ + N Sbjct: 731 ---------------------WVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRN- 768 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER- 896 G + A+ V D + ++S+ G ++R PV +I R T GV + + + V SV+ Sbjct: 769 -GPVCAMETVGYGDHLFVMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVY 827 Query: 897 -IRESEIVDEAESTE 910 + E+ +EA E Sbjct: 828 NVGSDEVDEEASDEE 842 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 14/252 (5%) Query: 528 EDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 D D +T+ + GYVKR + ++ G + ++D + D+ + Sbjct: 620 NTADIEDETDKYLTMATQNGYVKRTSVEKFQNILTTG--IIATKLDEDDELADVEVTDGS 677 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 ++ S G + + ARG + + L + + + ED +W Sbjct: 678 HDLVLASRDGMAIRFDESDVRAMGRSARG---VRGMKLEGDDELVGVAAVDEDRHNW--- 731 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLG 703 V+ T++G +R+ + + + +R+GK + + + D V + + + ++ G Sbjct: 732 -VLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNGPVCAMETVGYGDHLFVMSESG 790 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 Q +R P+ I GRN++GV + + +GD V S+ + + DE + + Sbjct: 791 QILRTPVEDISTV-GRNTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEASDEEAPDDETS 849 Query: 764 LISGDTEEITSL 775 E+ ++ Sbjct: 850 DEDTSDEDTSTE 861 >gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] Length = 820 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 346/891 (38%), Positives = 515/891 (57%), Gaps = 87/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M + + K+ Sbjct: 5 ENELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKH 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+ISG+ G +HPHG IY L RMAQ W +R L++GQGNFGSVDGDPPAA RYT Sbjct: 65 RKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A+ L+DDL K+TVD PNYD + EP V A++PN+L NG GIAVGMATNIP Sbjct: 125 EARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E+++ V+DNP+ + +M+++ PDFPTG +I G G+K AY TGRG I++R Sbjct: 185 PHNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYRGVKEAYHTGRGKIILR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 GV +IE+ DRE +V+ +IPY VNK+ ++E+IAEL K + I+DLRDESD+ G R+V Sbjct: 245 GVVNIEE-KKDREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG DVI+NQLY++T LQ F NM+AL+ P + ++ ++V R EVV R Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDKGLPRTMNIKQLIGSWVDHRIEVVRR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA R H+L G A+ NLDEVV+IIR S + E A+ L++ Sbjct: 364 RTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIE------------ 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S Q A+L+LRL +LTGL RD I++E + L +I+ +L Sbjct: 412 --------------HFEFSIKQANAVLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S + IIK+EL ++ + + R T+IVE DM+ ED I E ++T+S Y+KR+ Sbjct: 458 ASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+ +R QRRGG G G ++ED + L++ +TH +L F++LG Y KVW++P GS Sbjct: 518 PVDTFREQRRGGTGVVGFNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +++GK L+N+LS + E + + + YV+ AT++G V++ + F R Sbjct: 578 RRSKGKPLVNLLSDIRSEESIAT--VLQTSNFEGDRYVLMATRNGIVKKTPIDAFSNPRR 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ + DE+ E ++L T G VRF +R GR + GV+G+SL Sbjct: 636 NGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSM-GRMARGVKGVSLK 694 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ +V + Sbjct: 695 GDNDRVVGCEVVSGNET------------------------------------------- 711 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L V E GFGKR++ DFR +NR G G+R+ S+ N G +V + D Sbjct: 712 ----------VLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERN--GKVVGAVCITD 759 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D ++++S G +R+ + ++R+ R T+GV + + +D+ +V+++++ + Sbjct: 760 DDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKVESA 810 >gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] Length = 854 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 361/910 (39%), Positives = 536/910 (58%), Gaps = 90/910 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + K I + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 60 HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + A +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGCVA I++PDIDL LME I+GPDFPT +I+GR+GI+ A Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + IE+ R QI+VTEIPY VNKA ++E IA+LV+EKRI I+DL Sbjct: 240 YATGRGKITLRGRATIEEKKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLN 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE++R+G R+VI++++ A+ V+LNQLY+YT LQ V M+A++ P+ TL +++ Sbjct: 300 DETNRKGMRIVIDVRKDANPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419 +V F++EVV RRT+Y L KAR+RAH+L GL A +DE++ IR A+ +M+ Sbjct: 360 YVEFQDEVVRRRTQYDLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + Q AI++L+L RL GL I EL S Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELGS 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ +IL+ +R+L I+K ELL +K RRT I +++ ED I E V Sbjct: 454 LNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++ GY+KR + Y+AQ+RGG+G SG+ ++ED V ++F+ STH VLF + G ++ Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + + GS ++G ++N+L L +GE++T ++ +D + +V TK G ++R Sbjct: 574 RIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKDT-ANEGGFVTMVTKQGLIKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L + I +SG I + L+ D + + + +++ T+ GQ +RF R GR Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVR I LA+GD+V+ + I Sbjct: 692 SGHGVRAIKLAEGDEVVGVCICREN----------------------------------- 716 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 ILTV+E G G+R+ +RI+ R GKGIR D SK Sbjct: 717 ------------------ATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----D 754 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + AV V+D D ++L S +G +IR+ NEI + SR GV + ++++V+ + R Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLAR--- 811 Query: 900 SEIVDEAEST 909 ++ DEA++ Sbjct: 812 TDHDDEAQTE 821 >gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2] gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1] gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3] Length = 891 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 343/922 (37%), Positives = 502/922 (54%), Gaps = 98/922 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + +PD + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIAE Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAE 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASDDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP A+G + +LS E+I +M E + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYE---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ DE++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRSM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGLGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVD 904 S + V + E + + Sbjct: 821 VSVRGKDAVSIIALNPEHAVEE 842 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 8/269 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G ++D + S VL Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRT-EDDELIGAEQCSAGDDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ D V S+ + A ++ + + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGKDAV-SIIALNPEHAVEEKVTEELVETGEGDATQAESR 862 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798 + + + E + + + Sbjct: 863 DVLLQSDTVDDDRAADTAENDMKPEDNGE 891 >gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8] gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8] Length = 838 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 355/899 (39%), Positives = 529/899 (58%), Gaps = 93/899 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ Y Sbjct: 2 DEYNLIDQDVEHIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA G V+G+YHPHG+A++YDAL R+AQ +SLR L++G GNFGSVDGDPPAA RYT Sbjct: 62 RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDTVDF+PNYD QEPVVL +R+PN+L NG GIAVGMATNIP Sbjct: 122 EARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G V+ NPD LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I++R Sbjct: 182 PHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ R I+VTEIPY VNKA ++E IA LV++KRI I DLRDE+ R G R+V Sbjct: 242 SKTSIEEIK-GRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIV 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A+A V+LN+L+ T LQ V ++AL P+ TL IL+ ++ F+ +V+ R Sbjct: 301 IELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++R H+L GL IA+ N+DEV+ I++ S N ++ LM R Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTR----------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS++Q I ++ L RLTG+ R I +EL + ++ + DIL Sbjct: 410 ---------------FGLSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDIL 454 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R+L II +E+ +++++ RRT+I +++ ED I E+ VVT +++GY+KR+ Sbjct: 455 ANHQRVLDIIIEEVEAIQEKYGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+SVY+AQ RGGKG +G+ R++D VT++ + S+H ++LF ++ G YK K + LP GS Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSK 574 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RG + N+L L+ I ++ + + ++ Y+V TK G ++R LS + + + Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKVEDFD---DDKYIVMVTKRGKIKRTPLSAYKNVRKR 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ LD DEI V N++L+ T G +R + +RV + R + GVR I L Sbjct: 632 GLIAIGLDDGDEIAGVRLTEGNNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRG 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+SMA + Sbjct: 691 DDYVVSMARIR------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + +LTVSE G G+R + + +R G G+ G + + V+++D Sbjct: 702 ----EGASVLTVSETGLGRRVELESYPVRHRGGSGVLNYK------NGDVCGIKVVDEDD 751 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 II++S G +IR+ +I + R ++GV + D +VV+ R +E D AE E Sbjct: 752 DIIMISSDGIVIRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTR---TEHDDNAEIAE 807 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 13/252 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + +V V+ G +KR PLS Y+ R+ +G + + D D + + + + +L Sbjct: 600 EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRK--RGLIAIGLDDGDEIAGVRLTEGNNELL 657 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + + S A + + L + V+ Sbjct: 658 IATHNGMAIRISENDVRVMSRTA---HGVRAIKLRGDDY------VVSMARIREGASVLT 708 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 ++ G RR +L + +R G + + D ++ +++DI++ + G +R Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGVLNYKNGDVC-GIKVVDEDDDIIMISSDGIVIRLRA 767 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 I GR S GVR + + ++V++ H D + ++ E Sbjct: 768 CDI-SMMGRYSRGVRLMKVTGDNKVVTFTRTEHDDNAEIAEVEKASEEDIRKAQEEEKAE 826 Query: 771 EITSLKNDSSVE 782 + E Sbjct: 827 VLEDDAEPDDQE 838 >gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] Length = 814 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 348/900 (38%), Positives = 506/900 (56%), Gaps = 88/900 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ ++ + I V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MSSDANDANAP-AERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV N + K + I G+ MG YHPHG +AIYD L RMAQD+S+R LI+GQGNFGS+ Sbjct: 60 HEMGVSSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSM 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA RYTE R+ A LL D+ KDTVDF NYD QEP VL ++ PN+L+NG Sbjct: 120 DGDPAAAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TNIP HNLGE+VD V ++ NPD ++ LME I+GPDFPTG I+GR I +A Sbjct: 180 GIAVGMSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIVGRDAIYSA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG + +R ++ G +IV++E+PYQ NKA ++E+IA+ V E +I I+DLR Sbjct: 240 YATGRGRLRVRAEYEVDPEEG---RIVISELPYQENKARVVERIADDVNEGKIEGISDLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V+ELKRGA+ DV+ N+L + L+S F V +AL +P+ +L L+ Sbjct: 297 DESDRNGVRIVVELKRGANIDVVENRLLDH-HLESTFGVINLALVDGQPKVLSLKESLQH 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ R EVV RR++Y L +A DRAH+L G A+ N+++VV +IR + + AR L + Sbjct: 356 YIDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGLQE- 414 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + SE Q I+ ++L LT + +I +E + Sbjct: 415 -------------------------SFDFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDV 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I +L+SR +L +I EL VKD+ D RRT I+E + ED I ED VV Sbjct: 450 QNTIDYLESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ Y+KR+P+ + Q RGGKG G ++ D V+ +F ++H +L F++ G VY+ Sbjct: 510 VITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYR 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARGK+ IN++ L+ GE +T ++ E ++ + T++G V+R Sbjct: 570 LKTYEIPEMSRTARGKSAINLIDLDDGEELTAVVSTDEFG---DDECITMVTRNGYVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 S+F I +G IA KL+ DE++ V+ D+++ T+ G +RF S + GR+ Sbjct: 627 CCSEFENILSTGIIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM-GRS 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L D+V +M D Sbjct: 686 ARGVNGIKLQDDDKVAAMVATDDDDPRS-------------------------------- 713 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +LTV+E GFGKRT ++R +R GKG+ N G Sbjct: 714 -------------------LLTVTEHGFGKRTKLDEYRTQSRYGKGLIDIKTDDRN--GR 752 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + V D D ++++S++G ++R+ ++ R TKGV I +D+RV SV + Sbjct: 753 VSTAKAVTDEDHLVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASVTVVPAE 812 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 55/268 (20%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQE 693 ++ VV T+ ++R + +F NR GK + D + V Sbjct: 496 VTHEDLIPEEDCVVVITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSH 555 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + +L T GQ R I + R + G I+L D Sbjct: 556 DYLLCFTNQGQVYRLKTYEIPEMS-RTARGKSAINLIDLDD------------------- 595 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 ++ + ++ I V+ G+ KRT Sbjct: 596 ----------------------------GEELTAVVSTDEFGDDECITMVTRNGYVKRTC 627 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 +F N GI A + + L+ V + +++ ++ G IR +E+ Sbjct: 628 CSEF--ENILSTGIIAAKL---EDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM 682 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESE 901 R+ +GV D++V ++ + + Sbjct: 683 GRSARGVNGIKLQDDDKVAAMVATDDDD 710 Score = 92.5 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 70/169 (41%), Gaps = 8/169 (4%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 V + + + + + + + ++ +S+ + + ++L +E + Sbjct: 449 VQNTIDYLESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCV 508 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + ++E + KR +F NR GKGI D + + + + F N +D ++ +++G Sbjct: 509 VVITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKV---FRANSHDYLLCFTNQG 565 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906 + R+ EI SR +G + + E + +V + E D+ Sbjct: 566 QVYRLKTYEIPEMSRTARGKSAINLIDLDDGEELTAV--VSTDEFGDDE 612 >gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss] gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14] gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg] Length = 833 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 350/905 (38%), Positives = 533/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG A IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL ++ FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ NP ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++VI+N+LY++T +Q F NM+AL+ P ++ ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 RRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q+ AILELRL +LTGL D ++ E N L +I Sbjct: 413 ----------------LFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRR 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRT I D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDIIADESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F+++G Y KVW+LP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y++ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLLLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEEDFVVSCQVVTD----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSVNTESG 817 Query: 905 EAEST 909 E E + Sbjct: 818 ETEES 822 >gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319] gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319] Length = 836 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 364/847 (42%), Positives = 528/847 (62%), Gaps = 35/847 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TG+GSI+ Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S ++ I+V E+PYQVNKA ++EKIAEL R+K+I I DLRDESDR G R Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL +P+ L L+ ++ + V+ Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ NLD V+ +IR S + AR LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL+ VK+ + RRT I G +EDED I R+D+V++++H GY+ Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L +++GE + I+ E ++ Y+ F TK G +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDEFV---DDWYLFFTTKQGISKRTPLSSFENI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 SG IA+ L DE++SV+ + D+++ TK G +RF + +R GR + GV+GI+ Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGIT 692 Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+VI M I+ +D + Y K + + + N + G++ Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +C +E+ I+ ++ G R S D R+ +G++ + + + V Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809 Query: 848 NDNDQII 854 D D+++ Sbjct: 810 EDEDEVL 816 >gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] Length = 841 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 355/898 (39%), Positives = 522/898 (58%), Gaps = 91/898 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ S+ + SITD MQ +Y+ Y+++VI+ RA+PD RDG KPV RRIL+ M Sbjct: 1 MSDNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ G+ N+ + KCA + GEV+ YHPHG++++YD L R+AQDW +R LI QGNFGS+ Sbjct: 61 LREGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTEC+LQ A L D+ +DTVDF PNY S EP VL A PN+L+NG Sbjct: 121 DGDSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGST 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM TNIP HNL E++D A+IDNP I+LD L++ I GPDFP G I G++GI++ Sbjct: 181 GIAVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGGFIHGKSGIESY 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRG + RGV+ + + +E+I+++ IPY VN+A+++ +IAEL++EK I I+DLR Sbjct: 241 LKTGRGIVRTRGVAEVVENK-GKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES + R+VIELKRGA VI+NQLY+ T+L+S F V ++AL+ +P++ + +L Sbjct: 300 DESTEE-TRIVIELKRGAIPRVIINQLYKSTALESSFGVILLALDNRRPKQMNIKEMLTC 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ R EV+ RRT + L KA RAH+L G IA+ N+D+ V+IIR S N E A+ LM + Sbjct: 359 YIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMAK 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L+E+QT AILELRL +LTGL RD I E L Sbjct: 419 --------------------------YPLTEIQTNAILELRLYQLTGLERDKIEEEYRKL 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E DIL + SRLL +IK+EL +K++ PRR++++ D+ ED + E ++ Sbjct: 453 MELIGELKDILENESRLLEVIKEELGEMKEKYGNPRRSQVIAVDGDISMEDLVPNEGCMI 512 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H G++KR L YR+Q+RGGKG G ++DFV LF STH V+ F + G VY Sbjct: 513 TVTHKGFIKRTSLDEYRSQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYV 572 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKV+ +P GS A+G+A+ N+ L +GE+I ++ + + S + +V AT++G ++ Sbjct: 573 EKVYHIPEGSRTAKGRAMANVFELQEGEKIAAMICVKDFDESAQS--IVLATENGVTKKT 630 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF + G I + +D D ++ + E+DI+L T Q +RFP + +R GRN Sbjct: 631 KLSDFRNHRKGGIIGINIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRD-QGRN 689 Query: 721 SVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI L + D+V+++ IV Sbjct: 690 TRGVRGIKLKSENDKVVAIEIVDD------------------------------------ 713 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +L G GKRT ++R +R G GI A Sbjct: 714 -----------------EAKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAIK------SD 750 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + V D D+I++ + KG +R P++ +R+ RA GV + + + ++ + ++ Sbjct: 751 KVAGALSVTDADEIMMFTLKGQAVRSPIDTVRVTGRAASGVKLVNLGNKDELIGISKV 808 >gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381] gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 368/934 (39%), Positives = 546/934 (58%), Gaps = 132/934 (14%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I V + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Y Sbjct: 6 ENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSKSPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ ++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ A LL DL KDTVDF PNYD S EP VL AR PN+L+NG GIAVGMATNIP Sbjct: 126 EARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H+L E+VDG + ++D+ + L+ +M I+GPDFPTG VI G+ GI +AY TGRG + IR Sbjct: 186 PHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIFGKKGIIDAYRTGRGRVKIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +++ I++ E+PYQ NKA ++E+IA LV++K I I+++RDESDR+G RVV Sbjct: 246 AKTHIEQ-KSNKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ T++++ F V M+A++ +P+ FTLI +LK F+ R+ V++R Sbjct: 305 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKEPKIFTLIELLKLFLNHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 365 RTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQ----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q AIL+++L RLTGL R+ I NEL + EI+ IL Sbjct: 414 ---------------FSLSEIQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S + + IIK EL+ +K++ + PR T IV+ D+E ED I E+M+VT++H GY+KRV Sbjct: 459 KSETLIEQIIKDELIEIKNKFNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P Y Q+RGGKG+ + D+DF+ F H +++F ++ G +Y KV+++P GS Sbjct: 519 PSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N++ L E+I I+P + NN + F TK+G V+R LS++ I + Sbjct: 579 TAKGKAVVNLIDLQADEKIMAIIPTTDFN---NNKSLCFFTKNGIVKRTNLSEYQNIRST 635 Query: 672 GKIAMKLDSRDEILSVETCT--------------------QEND---------------- 695 G A+KLD DE+++ + D Sbjct: 636 GIKAIKLDDDDEVVTALIAERDINENLSNEKDLKSNDEIFGDEDELDSNDEILENENSEN 695 Query: 696 ---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHAD 745 I++ T+ G C++F +S +R GR S GV I + D+V+ A++ + Sbjct: 696 ENSQEDGTKIIVVTQKGMCIKFMLSNVREI-GRVSRGVTAIKFKEKDDKVVGAAVLQSDE 754 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 Q IL+VS Sbjct: 755 ----------------------------------------------------QEILSVSS 762 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G GKRT++ ++R++ R GKG+ ++K + G L+ V V++N+ ++ ++ G +IRV Sbjct: 763 NGIGKRTAAGEYRLTKRGGKGVICMKLTK--KTGELIGVVIVDENEDLMALTTSGKMIRV 820 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + IR A R T GV++ + + VVS+ + Sbjct: 821 DMQSIRKAGRNTSGVIVVNVD-GDEVVSIACCPK 853 >gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277] gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277] Length = 872 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 370/952 (38%), Positives = 553/952 (58%), Gaps = 133/952 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + E + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MENIFENNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD Sbjct: 61 GSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ +L D+ KDTVDF PNYD EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + V++N + L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIFGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IVV E+PYQ NKA ++E+IAELV+EK+I I+++RDESD+ Sbjct: 241 GRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELKR A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK F+ R Sbjct: 300 DGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + +AR L+ + Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL++RL++LTGL R+ + EL L EI Sbjct: 415 ---------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +IK ELL +K++ PR T IV+ D++ ED I E+MVVT++H Sbjct: 454 RLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N++ L E+I I+P + + + F TK+G V+R LS+F Sbjct: 574 IPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFA---ESKSLAFFTKNGIVKRTNLSEF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ E + Sbjct: 631 KNIRSIGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSE 690 Query: 696 ----------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738 + + TK G C++F +S +R GR + GV GI + GD+V+ Sbjct: 691 ENDENAAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAGDEVVGA 749 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 A++ + D Q Sbjct: 750 AVIENND----------------------------------------------------Q 757 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L++S+KG GKRT++ ++R++NR GKG+ ++ N G L+ V V+D ++ ++ Sbjct: 758 EVLSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDDEQDLMALTS 815 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G +IRV + IR A R T GV++ + D+ VS+ + +++ ++ S E Sbjct: 816 SGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIAKCPKADDGEDESSEE 866 >gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] Length = 823 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 365/906 (40%), Positives = 518/906 (57%), Gaps = 86/906 (9%) Query: 1 MTEHII--SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M+ + + + V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSSDVPEGPGVTADAARVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M +MGV + K + + GEVMG YHPHG++AIYD L RMAQD+S+R L++GQGNFG Sbjct: 61 AMHEMGVSSGSSHRKSSSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGDP AA RYTE R+ A LL D+ KDTVDF+ NYD +EP VL + +PN+LVNG Sbjct: 121 SMDGDPAAAMRYTEARMAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGM+TNIP HNLGEV+D + +IDNPD ++ LME ++GPDFPTGA I+G+ I Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIVGKNAIH 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AYATGRG + +R E+T R +IV+TEIP+Q NKA M+E+IA+ V E I ++D Sbjct: 241 AAYATGRGRLTVRAEYEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G RVVIE KRGA+ DV+ NQL + L+S F V +AL +P TL L Sbjct: 301 LRDESDRDGVRVVIECKRGANVDVVENQLLDH-HLESTFGVINLALVDGEPRVLTLKETL 359 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + +VA R+EVV RR+++ L +A DRAH+L G A+ N+D VV +IR S + + A+ L Sbjct: 360 EEYVAHRKEVVRRRSEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALE 419 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + T S Q + I+ ++L LT + ++ +E Sbjct: 420 E--------------------------TFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYE 453 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + EI+ IL+ S LL +IK EL +VKDE D RRT IVE + ED I E+ Sbjct: 454 EVEAEIERLETILNDESELLDVIKDELRAVKDEYDDDRRTSIVEDDGTVTREDLIPEEEC 513 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V V+ Y+KR+P + AQ RGGKG G ++ D V+ +F +TH +L F++ G V Sbjct: 514 LVVVTEDDYIKRMPADRFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQV 573 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ + + +P S ARGK+ +N+++ + GE IT ++ E + ++ + AT+ G V+ Sbjct: 574 YRLRTYEIPEMSRTARGKSAVNLINFDDGEEITAVVSMDEFD---DDECITMATRQGYVK 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R S+F I +G IA KL+ DE++ E+D+++ T+ G +RF + R G Sbjct: 631 RTCCSEFENILSTGIIAAKLEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQM-G 689 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRGI L GD V + D Sbjct: 690 RTARGVRGIDLRDGDNVAGVVATDEHD--------------------------------- 716 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ +LTV+E+G+GKRT ++R +R GKG+ N Sbjct: 717 ------------------ERALLTVTERGYGKRTPLSEYRTQSRYGKGLIDIKTGDRN-- 756 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G + AV V ++D +I++S G ++R PV ++ R T GV I A D+ V SV+ I Sbjct: 757 GGVTAVNAVAEDDHVIVMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVDVIP 816 Query: 899 ESEIVD 904 + I D Sbjct: 817 GTAIED 822 >gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58] gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58] Length = 829 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 347/893 (38%), Positives = 518/893 (58%), Gaps = 91/893 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 NEEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQ W++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FL++DL KDTVD NYD + EP V A++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + ++ NP ++ +ME++ GPDFPTG +I G GI + Y TGRG I +R Sbjct: 184 PHNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIICGHEGICSTYHTGRGKIKVR 243 Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ + E IV+TEIPY VNK+ ++E+IA+LV +K + I+D+RDESD++G RV Sbjct: 244 ARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q+ F NM+AL+ P + ++ A++ R EV+ Sbjct: 304 VLELKKGESSEVMINRLYKFTDVQTTFGANMLALDKNLPRTMNIHRMISAWIRHRAEVLR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA RAH+L G A++ LD VV+ I+ S + E A++++++ Sbjct: 364 RRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ Q AILELRL +LTGL + R E + L +I + Sbjct: 413 ---------------LYGFTDAQAVAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL + TPR+T I + ED I E +++T+S YVK Sbjct: 458 LADEELVKDIIRTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R QRRGG G SG M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPIKVFREQRRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +++GK+LIN L + GE++ I+ E N ++ ATK G V++ L F Sbjct: 578 GERRSKGKSLINFLEGIRPGEQVAAILNVKSFE---NADFLFLATKQGVVKKVPLDAFSN 634 Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE++ + + + ++L TKLG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL D V+S IV Sbjct: 694 VSLKNQEDCVVSCQIVTDN----------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V E GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERN--GDVLGAV 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 PV DND I+L+S +G IR+ + ++RI R+T+GV + + +V++ER+ Sbjct: 759 PVADNDSILLMSGQGQAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAMERLP 811 Score = 64.4 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 R + + + + + +++ E I+T+S + KR FR Sbjct: 469 RTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQR 528 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G+ D+ K + L AV+ + D +++ ++ G + V + R +KG Sbjct: 529 RGGHGVSGFDMKKGS--DFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKS 586 Query: 882 IFS----TAKDERVVSVERIRESEIVD 904 + + E+V ++ ++ E D Sbjct: 587 LINFLEGIRPGEQVAAILNVKSFENAD 613 >gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR] gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR] Length = 814 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 349/827 (42%), Positives = 513/827 (62%), Gaps = 32/827 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I ++I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 6 EFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDK 65 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD++ R L++G GNFGS+DGD AA R Sbjct: 66 PHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMR 125 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ KDTVDF PN+D + +EPVVL AR PN+L+NG GIAVGMATN Sbjct: 126 YTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATN 185 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++DG + +IDNPD LM ++GPDFPTG +I+GR GIK+AY TGRG+I Sbjct: 186 IPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIR 245 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE S + +I+V E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G + Sbjct: 246 IRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQ 305 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL++ A+ V+LNQL+++T LQ F V M+AL +P+ L L ++ +++V+ Sbjct: 306 IVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVI 365 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L+KA RAH+L GL IA+ +LDEV++ IR S E AR LM + Sbjct: 366 TRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDK--------- 416 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL +LTGL R+ + E +L I Sbjct: 417 -----------------FGLSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKA 459 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L++ +LGIIK+ELL +K++ + PRRT I ++++ ED I EDMV+T++HLGY+K Sbjct: 460 VLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIK 519 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L YR Q+RGG+G + + ++EDFV LFI +TH +LFF++ G VYK KV +P Sbjct: 520 RIALDTYRNQKRGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEA 579 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G A++N+L ++ E+IT ++P ++ Y++ T+ G +++ L ++ Sbjct: 580 GRQAKGTAIVNLLYISGDEKITAVIPVRSFDT---EEYLLTITRKGVIKKTPLVEYGSTR 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ LD DE++ V+ +N++++ TK G+ +RF +R GR + GVRGISL Sbjct: 637 KDGIIALSLDENDELIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSM-GRAARGVRGISL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D+VI + + S + + Sbjct: 696 SEKDEVIGIDTIEQGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVGI 755 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 E ++ ++ +G R RS +G+R + + + Sbjct: 756 KVVKPGDE--LMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLDEND 800 >gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] Length = 828 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 361/896 (40%), Positives = 547/896 (61%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R++ GVRGI L + D V+ ++ Sbjct: 686 RSARGVRGIRLNENDFVVGAVVINDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 98.3 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L S + RL + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++ G KRT+ +F SNRS GIRA + + LV+ V+ N +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R+ +GV +++ VV I + Sbjct: 668 SYLGIFIKFPLEDVREIGRSARGVRGIRLNENDFVVGAVVINDD 711 >gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1] gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1] Length = 839 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 342/836 (40%), Positives = 516/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+YD + RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + ++ D+ KDT+D+R NYDGS +EP+V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ +P+I + LM+ I GPDFPT +I+GR+GI+ AY +G+GSI Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE + +E I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 MRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L ++ ++ V+ Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ +IR S + AR LM+ Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL RD I NE L I E Sbjct: 413 ----------------NFSLSEKQAQAILDMRLQRLTGLERDKIENEYQELVKLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL +K+ + RRT IV G+ +EDED I RE++++T++H GY+ Sbjct: 457 ILADEEKVLEIIREELNEIKERFNDERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G +K K + +P Sbjct: 517 KRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S A+G +IN+L +++GE + ++ E ++ Y+ F TK G +R +SDF I Sbjct: 577 FSRTAKGIPIINMLGVDKGEWVNAMIRIEEFV---DDWYLFFTTKQGISKRTPVSDFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV+ DI++ T+ G +RFP + +R GR + GV+GI+ Sbjct: 634 RTNGLIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSM-GRTATGVKGIN 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M I+ D + ++ E Sbjct: 693 LDSEDIVVGMEILEEKDDVLVVTEKGFGKRTPAEEYR--IQTRGGKGLKTCNITDRNGEL 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E+ ++ ++ G R D I+ R+ +G++ + + + + + V Sbjct: 751 ISVKAVTGEEDLMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 140/403 (34%), Gaps = 35/403 (8%) Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449 L +A+ ++V+ IIR N R +R+ + I+ I+D + + L Sbjct: 454 LKAILADEEKVLEIIREELNEIKERFNDERRT---EIVAGGIEQIEDEDLIPRENIILTL 510 Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509 + I L ++ R + + + +S + + + K Sbjct: 511 T--HNGYIKRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFK 568 Query: 510 DE---LDTPRRT------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + RT E + M + V + + + G KR P+S Sbjct: 569 AKGYEIPEFSRTAKGIPIINMLGVDKGEWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVS 628 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + R G + +R+ D + + + ++ + G + + + A Sbjct: 629 DFANIRTNG--LIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSMGRTAT 686 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN + + E V+ T+ G +R ++ R GK Sbjct: 687 GVKGIN---------LDSEDIVVGMEILEEKDDVLVVTEKGFGKRTPAEEYRIQTRGGKG 737 Query: 675 AMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 + D E++SV+ T E D++L T G +R ++ I GRN+ GV+ I L + Sbjct: 738 LKTCNITDRNGELISVKAVTGEEDLMLITAHGVLIRMDVNDI-SITGRNTQGVKLIRLDE 796 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 V ++A V + ++ + S+++ E Sbjct: 797 NSSVATVAKVEKDEEKEEDIPVDLTEESSEQAAEDSADETDNE 839 >gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40] gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus] gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40] Length = 862 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 369/935 (39%), Positives = 546/935 (58%), Gaps = 124/935 (13%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+I SS+++ I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+ ++GQGNFGSV Sbjct: 57 NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ A LL DL KDTVDF PNYD S EP VL AR PN+L+NG Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R +HIEK +++ IVV E+PYQVNKA + IA+LV+EK I I+++R Sbjct: 237 YKTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR A ++++LN L++ T ++ F V M+A+N +P+ F+L+ +LK Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S + +AR LM + Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q+ AIL++RL++LTGL R+ + EL + Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I++ IL S + + II+ ELL +K + PR T IV+ D++ ED I E+MVV Sbjct: 450 LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +H +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++SL E+I I+P + + + + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFD---ESKSLAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695 LS+F I G A+ LD DE+++V E D Sbjct: 627 NLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSE 686 Query: 696 --------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADA 746 + TK G C++F ++ +R GR S GV I + D+V+ ++ + Sbjct: 687 NSLESGKMLFAVTKKGMCIKFALNKVRQI-GRVSRGVTAIRFKENLDEVVGAVVIENDS- 744 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 Q IL+VS+K Sbjct: 745 ---------------------------------------------------QEILSVSQK 753 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G GKRT++ ++R+ +R GKG+ ++ + LV V V++ ++ ++ G +IRV Sbjct: 754 GIGKRTTADEYRLQSRGGKGVICMKLTPKTK--DLVGVVMVDEEMDLMALTSSGKMIRVD 811 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + IR A R T GV++ + + VVS+ R + E Sbjct: 812 MQSIRKAGRNTSGVIVVNVD-GDEVVSIARCPKEE 845 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 95/300 (31%) Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700 N VV T G ++R + + R GK+A+ D I S TC + ++ T Sbjct: 503 PNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVT 562 Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 GQ + I R + G V ISL +++ ++ D Sbjct: 563 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFD------------ 609 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 + + + ++ G KRT+ +F Sbjct: 610 --------------------------------------ESKSLAFFTKNGIVKRTNLSEF 631 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQ------------------------ 852 N G++A ++ ++ LV V N D+ Sbjct: 632 --KNIRSIGVKAINL---DDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSE 686 Query: 853 --------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIV 903 + V+ KG I+ +N++R R ++GV ++ + VV I Sbjct: 687 NSLESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQE 746 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 100/300 (33%), Gaps = 79/300 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D ++++ + + + + + G +F +S ++ S + + L+ Sbjct: 387 IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 437 Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +++ + + +L D + + R + + + + + + Sbjct: 438 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 497 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826 ++L E ++T++ +G+ KR S + R GKG Sbjct: 498 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 557 Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856 ++ + + + +V + + +++I + Sbjct: 558 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKSLAFF 617 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910 + G + R ++E IR GV + ++ +V+V + D E E Sbjct: 618 TKNGIVKRTNLSEFKNIRSI-----GVKAINLDDNDELVTVVIANSEPDESYDDSFEDGE 672 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 98/262 (37%), Gaps = 14/262 (5%) Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 + L+ + +RT + E + D + + P Y G Sbjct: 612 KSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDG 671 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G S + ED + + + + G K + ++ +RG + + Sbjct: 672 EGVSNLQTISEDNSENSLE--SGKMLFAVTKKGMCIKFALNKVRQIGRVSRG---VTAIR 726 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSR 681 + E+ ++ ++ ++ G +R ++ G I MKL + Sbjct: 727 FKENLDEVVGAVVIEN----DSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPK 782 Query: 682 DE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 + ++ V +E D++ T G+ +R + +IR AGRN+ GV +++ GD+V+S+A Sbjct: 783 TKDLVGVVMVDEEMDLMALTSSGKMIRVDMQSIR-KAGRNTSGVIVVNV-DGDEVVSIAR 840 Query: 741 VLHADADYDERICYMKHMSAQR 762 ++D D+ + Sbjct: 841 CPKEESDDDDIVADDTQEQDME 862 >gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211] gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211] Length = 818 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 349/896 (38%), Positives = 512/896 (57%), Gaps = 93/896 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 V IT+E++ +++ YA+NVI+ RA+PD+RDGLKPVHRRI++ M+Q G+ N+K+ K A Sbjct: 5 LPVDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAA 64 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + GEVM KYHPHG++ IYDA+ R+ Q W++R +++ QGNFGS+DGD AA RYTE R+ Sbjct: 65 VVGEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMT 124 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A LL DL K+TVD +PNYD + EP VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 125 KLAEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLT 184 Query: 197 EVVDGCVAVIDNPDID---------LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 E+V+G +++ID P LD LM ++GPDFPTG I R+GI++AYATG Sbjct: 185 EIVNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRIS-RSGIRDAYATGHAG 243 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306 + +RG + I++ R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR + Sbjct: 244 LKVRGKARIDE-KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKE 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 R+V+ELKRGA ++LNQLY+YT LQ+ F+V +++ +P+ L+ ++ F+ R Sbjct: 303 PVRIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNGEPKVLPLLDTMRYFLEHRA 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRT Y L KA++RAH+L GL A+ ++DEV+ +IR S AR LM R Sbjct: 363 DVVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L++VQ +AIL++RL RL GL R+ ++ E N L I Sbjct: 417 --------------------FQLTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDR 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL L IK+EL ++D RR+ I + D+ ED I EDMV+T++ G Sbjct: 457 LKAILGDEKLLWREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMTRAG 516 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR L YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G ++ EK++ L Sbjct: 517 YLKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDL 576 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G + N+L + + VFATK G +++ ++ D+ Sbjct: 577 PEAGRDAKGTHIKNLLPGLRENESVA--SVLAIKDFDEAGSFVFATKRGMIKKTQIRDYG 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L D ++ V + I+L T GQ +RF + +R GR + GV G Sbjct: 635 NITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVRD-TGRATQGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L GD V+SMA+V D D + Sbjct: 694 IRLRDGDHVVSMAVVPGDDEDSE------------------------------------- 716 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L +SE G GKRT D+ R G G+ DV++ + G LVA+ Sbjct: 717 -------------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTE--KTGKLVALAR 761 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V ++++++++ KGT+IR V E+R+ R +GV I + + V+S IR+ + Sbjct: 762 VAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKEDE 817 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 66/266 (24%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T+ G ++R KL + +R G+ + KL D V + + +L T G+ Sbjct: 509 VITMTRAGYLKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRL 568 Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760 I + AGR++ G I L + + V S+ + D Sbjct: 569 FHEKIYDL-PEAGRDAKGTH-IKNLLPGLRENESVASVLAIKDFD--------------- 611 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI 819 F+ +++G K+T D+ I Sbjct: 612 ----------------------------------EAGSFV-FATKRGMIKKTQIRDYGNI 636 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 ++ G+ A ++ L+ V D D I+L + G +R NE+R RAT+G Sbjct: 637 TS---AGLIALNLQD---DDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVRDTGRATQG 690 Query: 880 VVIFSTAKDERVVSVERIRESEIVDE 905 V+ + VVS+ + + E Sbjct: 691 VIGIRLRDGDHVVSMAVVPGDDEDSE 716 >gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305] gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305] Length = 952 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 25/914 (2%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+ S + I + I DEMQNSYLTYA++VI+ RA+PD+RDGLKP RRIL M Sbjct: 8 ENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMND 67 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + N KC++I+GE MG YHPHG+ AIY L RMAQDW++R +LI+ QGNFGS+ G Sbjct: 68 LNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLAG 127 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 PPAA RYTE RL A +L D+ +TVDF P YD EP VL +R+PN+LVNG GI Sbjct: 128 LPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSGI 187 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMAT+IP HNL EV + VID P+ +D + +++ GPDFPTG VI G+ G + Y+ Sbjct: 188 AVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVICGQFGTRQGYS 247 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGR +I +R +H + + IVVTEIPY + + EK+ LV+++R+ IA + D Sbjct: 248 TGRSTITLRAKTHFDTEKQ-SDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVVDL 306 Query: 303 SD----RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +D + I LKR A +V+LNQLY+Y+ LQ+ FS+ ++AL G +P+ ++ +L Sbjct: 307 TDRKIPNWQVHLQIVLKRDADKEVVLNQLYKYSPLQTTFSIILLALVGNRPQLLSIKDML 366 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R V+ RRT++ L++AR R H + G+ IA N+DEV+ IR SP+ A+ L Sbjct: 367 LEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKNRLR 426 Query: 419 QRSWNASDIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 A I + + G+ LS Q AI+ ++L L L R+ + +E Sbjct: 427 DIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKLGDE 486 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L EI ECL +LS + + +++E+ ++ + RRT I E L ++D ++ E Sbjct: 487 HRKLLEEIDECLHLLSDEAHIRAAVREEMDDLQRKYPDKRRTEISEIELTDVNKDELIAE 546 Query: 537 -DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 MVVT++ GY+KR L+ Y+AQ RGG+G +G +ED + +F+ STH+ +LFF++L Sbjct: 547 APMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVASTHSYLLFFTNL 606 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY +KV+ LP+ + A+G+AL+N+LSL GE + + E + + +++ ATK G Sbjct: 607 GRVYWQKVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFD---DERFLMMATKKG 663 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LS + + R G IA+KLD DE++ V E+D++++T G +RF R Sbjct: 664 VVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFNHDDARA 723 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GV+G+SL K D V+ M + + + D EE Sbjct: 724 M-GRNTRGVKGVSLGKDDHVVGMVVADEQMCLLTACENGYGKRTPFGFGGASDAEEAPVD 782 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + + S + + E R++ +R R GKG+R ++ Sbjct: 783 DDAVDSTEDSSADSSDDSSSDEPDT----------RSNM-RYRRQKRGGKGLRDIRTTER 831 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G V + V D+D ++++S G + R+ +I R T+GV I +R+V + Sbjct: 832 N--GKAVDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGDRLVGLA 889 Query: 896 RIRESEIVDEAEST 909 RI VD E Sbjct: 890 RIPAEINVDSDEEE 903 Score = 54.4 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 16/265 (6%) Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED ++ + G R RA R +G GV + +D V + + +L Sbjct: 699 APEDDLIISTANGMSIRFNHDDARAMGRNTRGVKGVSLGKDDHVVGMVVADEQMCLLTAC 758 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G+ + + + S ++ ++ + +N+ + Sbjct: 759 ENGYGKRTPFGFGGASDAEEAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKR 818 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G R I + + + + + ++D+L+ + G+ R + I Sbjct: 819 GGKGLR-------DIRTTER-------NGKAVDILAVADDDDVLIISSAGKIQRIRAADI 864 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 GRN+ GVR + + GD+++ +A I + D DE + +A+ S Sbjct: 865 -SQVGRNTQGVRIMRMGDGDRLVGLARIPAEINVDSDEEEVPVDDAAAEANGESTPAATD 923 Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797 + D + E Sbjct: 924 AAPAADGDATPAEPTAEAGDDSDAE 948 >gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 844 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 365/848 (43%), Positives = 524/848 (61%), Gaps = 20/848 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I E+ +SYL YA++VI+GRA+PD+RDG KPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L DL KDTV+F PNYD + Q P V+ + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+ C+A ID+ +I ++ LM+ + GPDFPT +I G GI+ AY TGRG I IR Sbjct: 186 NISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRIYIRAK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 ++IE R+ I+V EIPYQVNK ++EKIAELV+EKR+ I+ LRDESD++G R++I Sbjct: 246 ANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRILI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A A+VILNQLY T LQ F +NMVAL+ +P+ TL IL+AF+ R EVV RR Sbjct: 306 ELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L LA+A+AN+D ++++IR + NP A+ L+ ++W + ++D Sbjct: 366 TLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSMLD 425 Query: 433 LIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D + G + +E Q +AIL+LRL +LTGL D++ NE L Sbjct: 426 CVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKELLN 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E ILS RLL +I++E LS+K + PRRT I D+ ED I +ED+VVT+ Sbjct: 486 AIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQEDVVVTL 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+K PLS Y AQ RGGKG+S +DEDF+ L + +TH ++L FSS G +Y K Sbjct: 546 SHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGRLYWLK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP S +RG+ ++N+L LN ERIT I+P E+ YV AT G V++ L Sbjct: 606 VYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYET---GQYVFMATACGVVKKIAL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + +G + LD DE++ V+ N+++L + G+ +RF +R GR + Sbjct: 663 LEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAM-GRTAR 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV GI LA+ D+V+S+ I +++ + + + V Sbjct: 722 GVGGIRLAQEDRVVSLIIPRGDGDILTVTANGYGKKTSKEEYPTRSRNGMGVIS--IKVN 779 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + ++ +++ G RT + + +R+ KG+ + +V Sbjct: 780 GRNGNVVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEK---VV 836 Query: 843 AVFPVNDN 850 + + ++ Sbjct: 837 GLQRLVED 844 >gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 865 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 347/900 (38%), Positives = 525/900 (58%), Gaps = 90/900 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 5 ENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKH 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+ISG+ G YHPHG IY L RMAQ W +R L++GQGNFGSVDGD PAA RYT Sbjct: 65 RKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A+ L++DL K+TV+ PNYD + +EP V A++PN+L NG GIAVGMATNIP Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++ + V+ NP + +D +M ++ PDFPTG +I G GIK A+ TGRG +++R Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLR 244 Query: 252 GVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 V +E+ D+++++V EIPY VNK+ ++E+IA+L+ K I IADLRDESD+ G R Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++IELKRG +VILNQL++Y+ LQ F NM+AL+ P+ + ++ A+V R EVV Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVV 364 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA RAH+L G A+ ++DEVVR+IR S N E AR EL+QR Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR--------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q A+L+L+L +LTGL + I E L +I Sbjct: 416 -----------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRA 458 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+S + + II++ELL ++ + R+T+I+ ++ ED I E +++T+S Y+K Sbjct: 459 VLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ +R QRRGG+G +G+ ++ ED + L++ STH +L F++LG Y KVW++P Sbjct: 519 RMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPE 578 Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +++GK LIN+L + E+I T++ E Y++ ATK G V++ +LS+F Sbjct: 579 TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQ---AYILMATKKGIVKKTELSEFSH 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 R G A+ + DE+++ + I+L T G VRF +R GR + GV+G+ Sbjct: 636 PRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPM-GRTARGVKGV 694 Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +L D V+ V + Sbjct: 695 TLKDDTDYVVGCEAVNGTET---------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL V E GFGKR++ DFR +NR G G+R+ S+ N G +V Sbjct: 715 -------------ILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERN--GNVVGALC 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V D D ++++S +G +R+ + ++R+ R T+GV + + + + +V+++++ S+ VD A Sbjct: 760 VTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNA 819 >gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] Length = 855 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 369/935 (39%), Positives = 554/935 (59%), Gaps = 117/935 (12%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MENIFNKDSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R I+GQGNFGS+DGD Sbjct: 61 GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E+VDG + ++D+ D L+ LM+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + IR +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDESDR Sbjct: 241 GRVKIRAKTHIEK-KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+ TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+E+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL +K + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + N + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ + Sbjct: 631 QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKM 690 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICY 754 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 LFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--------- 740 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 Q IL++S KG GKRT++ Sbjct: 741 -------------------------------------------QEILSISAKGIGKRTNA 757 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 ++R+ +R GKG+ ++ ++ L++V V+++ ++ ++ G +IRV + IR A Sbjct: 758 GEYRLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMQSIRKAG 815 Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 R T GV I +++ VVS+ + + E+ DE Sbjct: 816 RNTSGV-IVVNVENDEVVSIAKCPKEELEDEISDE 849 >gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2] gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2] Length = 854 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 367/836 (43%), Positives = 523/836 (62%), Gaps = 35/836 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ I + I EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L DL K+TVDF PNYDG EPVVL ARYPN+LVNG GGIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I+NPDI LM+ I+GPDFPT ILGR+GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ ++ +I+V E+PYQVNKA ++EKIAELVR+KRI I DLRDESDR G R Sbjct: 243 MRAKTTIEEIG-NKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN L+++T++QS F +NM+A+ +P+ L +L ++ + EV+ Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ Q +AIL++RL RLTGL R+ I NE N L +I E + Sbjct: 413 -----------------FSLTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II +EL +K RRT I G + DED I RED+++TV+H GY+K Sbjct: 456 ILANEHLVLNIISEELNELKGRFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+Q+RGG+G G+ +DEDFV LFI ++H +LFF+ G VY+ K + +P Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P E + Y+ FAT+HG +++ L D+ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPIEEFV---EDSYLFFATQHGIIKKTPLDDYANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + ++++ T G +RFP S +R GR++ GV+GISL Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGISL 691 Query: 730 AKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D VI M IV D Y K A I + N + G + Sbjct: 692 DESDAVIGMDIVNTDLDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVGL 751 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E+ ++ ++ G RTS + R+ +G+R ++ + + + Sbjct: 752 KVV---KAEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCRA 804 >gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08] Length = 891 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 343/922 (37%), Positives = 503/922 (54%), Gaps = 98/922 (10%) Query: 1 MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + ++ + I V I DE+QN+YL YA++VI+GRA+PD+RDGLK Sbjct: 1 MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+++ M G ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R L Sbjct: 61 PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++GQGNFGS D AA RYTEC++ A ++ D+ +DTVDF+PNYD EPVVL +R Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIPTHNL EV + +PD + ME I+GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 GA+I+GR GI++AY TGRGS+ +R V +E+ R+ +VVTE+PY N + KIAE Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAE 300 Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV RI IAD+RD+S R G R+VI LKR A V++N LY++T+LQ F NM+AL Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L + ++ + EV+ RRT+Y L +A AH+ L A+ LDEV+ +IR Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 SPN E A L + + + E+Q RAIL+++L RL Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L R I + L L I + IL+S R II EL + D+ RRTRI+ Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASDDRQREIISTELAEIVDKYGDERRTRIIAADG 514 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D +ED I +D+VVT++ GY KR +YR Q+RGGKG G +R +D V LF + Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF+++G VY+ KVW+LP A+G + +LS E+I +M E + Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYE---DA 631 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQ 704 Y++ AT+ G V++ L + ++G IA+ + D E++ E C+ +D+LL ++ GQ Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 +RF +R GR + GV G+ D+++SM+I+ Sbjct: 692 AIRFSAGDDQLRSM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 ++ ++F+ T + G+ KRT+ ++R R Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+A +S+ E G+LV V++ D+II + G + R V+E+ R+T GV Sbjct: 763 GGLGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820 Query: 883 FSTAKDERVVSVERIRESEIVD 904 S + V + E + + Sbjct: 821 VSVRGKDAVSIIALNPEHAVEE 842 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 94/269 (34%), Gaps = 8/269 (2%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ + G VK+ L Y + R+ G +++ + S VL Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRT-EDEELIGAEQCSAGDDVLLI 686 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + R + + + + + ++ D ++ +V AT Sbjct: 687 SRKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744 Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +S++ Q R G AM L ++ ++ ++I+ GQ R Sbjct: 745 GGGYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +S + GR+++GV+ +S+ D V S+ + A ++ + + Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGKDAV-SIIALNPEHAVEEKVTEELVETGEGDATQAESR 862 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798 + + + E + + + Sbjct: 863 DVLLQSDTVDDDRAADTAENDMKPEDNGE 891 >gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] Length = 828 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 361/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++IS E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIS----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+Y AL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EK ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKMK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDVEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + ++ +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRGI L + D V+ ++ Sbjct: 686 RNARGVRGIKLNENDFVVGAVVINDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 99.9 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 86/508 (16%), Positives = 168/508 (33%), Gaps = 64/508 (12%) Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461 II P + + + + I+ I + +G + E++ A+ E+ Sbjct: 259 EIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVIELKRDAMSEIV 318 Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521 L L L + + L I KE L + ++ + ++ + + + Sbjct: 319 LNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIRRTIFELEKAKAR 378 Query: 522 EGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRGGKGRSGVVMRDEDFVT 578 +L+ +++V + S + L + K + ++ + Sbjct: 379 AHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKAILEMRLQRLTGLE 438 Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638 I + ++L + + RL + S + E Sbjct: 439 RDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDV 498 Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDI 696 ++ N VV + G V+R L + + NR GK++ D I + + + Sbjct: 499 EDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDIL 558 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERIC 753 L T GQ + I A R ++G V ISLA +++ MA + D Sbjct: 559 LFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD-------- 607 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 E+ + ++ G KRT+ Sbjct: 608 ----------------------------------------FSDERSLAFFTKNGVVKRTN 627 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRI 872 +F SNRS GIRA + + LV+ V+ D +++ S G I+ P+ ++R Sbjct: 628 LSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVRE 683 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900 R +GV +++ VV I + Sbjct: 684 IGRNARGVRGIKLNENDFVVGAVVINDD 711 >gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 788 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 353/861 (40%), Positives = 522/861 (60%), Gaps = 85/861 (9%) Query: 45 LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104 +RDGLKPVHRRIL+GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W Sbjct: 1 VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60 Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164 S R +L++G GNFGS+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP Sbjct: 61 SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120 Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224 +VL AR+PN+LVNG GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPD Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284 FPTGA+++G++GI AY TG+GSI +R + IE T RE+IVVTE PY VNK + E I Sbjct: 181 FPTGALVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHI 240 Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 LV+EKRI I +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ Sbjct: 241 VRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAI 300 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P+ +L IL A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RII Sbjct: 301 QNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRII 360 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R S A+ ELM + LSE Q++AIL++RL R Sbjct: 361 RASETDAEAQAELMSK--------------------------FKLSERQSQAILDMRLRR 394 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-G 523 LTGL RD I++E + L I + DIL+ R+ IIK EL VK + RRT ++ Sbjct: 395 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQ 454 Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583 +L +EDED I D+++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L Sbjct: 455 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 514 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643 STH +LFF++ G VY+ K + +P A+G ++N+L L++ E I T++ D S Sbjct: 515 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS-- 572 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 ++ Y+ F T+HG V+R + +F I ++G A+ L DE+++V + DI++ TK G Sbjct: 573 DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFG 632 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VRF SA+R + R + GV+G++L +GD V+ + Sbjct: 633 YAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGAS------------------------ 667 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 L + +L ++EKG+GKRT + ++ R Sbjct: 668 -----------------------------LITDQDEVLIITEKGYGKRTVATEYPTKGRG 698 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 GKG++ +++ N G L + V ++ +++++D G +IR + I RAT GV + Sbjct: 699 GKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVM 756 Query: 884 STAKDERVVSVERIRESEIVD 904 +D ++V+ + +E + Sbjct: 757 RLDQDAQIVTFTTVAVAEKEE 777 Score = 94.5 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 348 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 398 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + + + + + + + G + Sbjct: 399 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 458 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S +G+ KR +F R G+G++ T V + + LV+ + Sbjct: 459 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 515 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + +DE + +V ES+ D+ Sbjct: 516 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 574 Query: 906 A 906 A Sbjct: 575 A 575 >gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 928 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S DG +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L++GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + G IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + ++ + + E + Sbjct: 893 EEAVDGGIADVADAQADDAGEDLQLDAAPDEDEPQ 927 >gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068] gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068] Length = 938 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 369/930 (39%), Positives = 543/930 (58%), Gaps = 33/930 (3%) Query: 1 MTEHIISSDEEEEKGITS---------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51 M+ + I DE++ SYLTYA++VI+ RA+PD+RDGLKP Sbjct: 1 MSSDFDPPSGPSASELPPGDDGTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKP 60 Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 RRIL M + + VKCA+ISG+ G YHPHG + IY L RMAQ+W++R +LI Sbjct: 61 SQRRILVAMNDLNLTPGAPRVKCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILI 120 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 + QGNFGS+ G PPAA RYTE RL A +L+DL DTVDF P YD QEP VL R+ Sbjct: 121 DKQGNFGSIAGLPPAAMRYTEARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRF 180 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231 PN+LVNG GIAVGMAT+IP HNLGEV + V VID+P++ L L EII+GPDFPTG I Sbjct: 181 PNLLVNGAQGIAVGMATSIPPHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTI 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 GR GI+ Y GR +IV+R + IE+ DR +I++TEIPYQ + ++EKIAELV E+ Sbjct: 241 CGRAGIRRGYRDGRSTIVLRAKTRIEEHKKDRYRIIITEIPYQQARDRVVEKIAELVNEE 300 Query: 292 RIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 RI I+ + D SD ++ +VI++KR A V+LNQLY+++ LQ S+ ++AL KP Sbjct: 301 RIKGISGITDLSDLKEPVHLVIDIKRDADPYVVLNQLYQFSPLQDSISIILLALVDGKPR 360 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 +L +L+ F+ R V+ RRT++LL+KAR R H + GL +A+AN+DE++RIIR S Sbjct: 361 ELSLKELLEEFLRHRVTVIRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQ 420 Query: 411 ETARRELMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 A+ LM A+ ++ + + G+ T L+ VQ+ AIL + L +L L Sbjct: 421 AEAKVGLMGVECPAAMMQRALGEEGFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDM 527 ++ + E L EI E L IL+ + + +IK+EL+++ + RRT I E + D+ Sbjct: 481 EQERLGGEHAELLKEIAEYLRILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDV 540 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I E MVV++SH GY+KR P S YRAQRRGGKG G DED + LF+ STH Sbjct: 541 NLEDLITEETMVVSISHRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHA 600 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +LFF++LG VY +KV+ LP S ++RG+A++N+L+L++GE+I + + + + Sbjct: 601 YLLFFTNLGRVYWQKVYDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFD--QQGHF 658 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 ++ AT+ G V+++ L D+ + + G IA+KL DE++ V ++++L+T G +R Sbjct: 659 LMMATRKGLVKKSPLEDYSRPKKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIR 718 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-------DADYDERICYMKHMSA 760 F S R GRN+ GV+GISLA GD ++ M + + Y +R + + Sbjct: 719 FSESDARPM-GRNTSGVKGISLASGDSLVGMVVADPDATLLTVCENGYGKRTNFGPNAEV 777 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + D T + SS E + E+ +S +R Sbjct: 778 VGPPPADDDSIDTGSIDTSSAEAETVVAEPPAPAEEAAAEDEGDEE----GSSGSRYRTQ 833 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R GKG+R + N G ++AV V+D +++++++ +G L R+ EI+ R T+GV Sbjct: 834 RRGGKGLRDIKTTTRN--GTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGV 891 Query: 881 VIFSTAKDERVVSVERIRESEIVDEAESTE 910 I S D+++V+V R+ DEAE T+ Sbjct: 892 RIMSLDDDDKLVAVVRVPR----DEAEVTD 917 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 7/220 (3%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D VV + G R S R R G G+ + D + + + ++L G Sbjct: 705 DEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISLASGDSLVGMVVADPDATLLTVCENG 764 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P A + + + + E + + Sbjct: 765 YGKRTNFG--PNAEVVGPPPADDDSIDTGSIDTSSAEAETVVAEPPAPAEEAAAEDEG-D 821 Query: 657 VRRNKLSDFIQINR--SGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 + S + R G +K +++V ++L+ T G+ R I Sbjct: 822 EEGSSGSRYRTQRRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREI 881 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + GRN+ GVR +SL D+++++ V +A+ + Sbjct: 882 KTI-GRNTQGVRIMSLDDDDKLVAVVRVPRDEAEVTDLAA 920 >gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818] gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] Length = 824 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 353/883 (39%), Positives = 531/883 (60%), Gaps = 89/883 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ + + Y Sbjct: 6 EDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ A+ +L D+ KDTV+F PNYD + EP VL +R PN+LVNG GIAVGMAT+IP Sbjct: 126 ARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H + E++D + VIDN ++D ++E+++GPDFPTG +I G+ GI AY TGRG I +R Sbjct: 186 HRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 HIEKT ++ IV+ E+PYQVNKA ++E+I+EL +EK I IA++RDESDR+G RVVI Sbjct: 246 KVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++++LN L++ T+++S F + ++A+N +P+ F L+ +L+ F+A R+ +++RR Sbjct: 305 ELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + L KA+ RAH+L GL IA+ N+DE++RIIR S + E A+ L+++ Sbjct: 365 SIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEK------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE+Q +AILE+RL RLTGL RD I E L +I IL Sbjct: 413 --------------FSLSELQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILK 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L I+K ELL +K++ + R+T+I E ++ ED I E +VVT+SH GYVKRV Sbjct: 459 SEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEKVVVTMSHRGYVKRVL 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L Y Q RGGKG+ ++DF+ F+ +TH +++F ++ G +Y KV+++P Sbjct: 519 LKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A GKA++N+++L+ E+I + + ++ +VF TK+G V+R L ++ I G Sbjct: 579 AIGKAVVNLINLSPDEKIMATITTTDFN---DDKSLVFFTKNGIVKRTNLKEYSNIRSVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ LD DE+++ ++ + T+ G C+RF I +R GR GV GI Sbjct: 636 VRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELREI-GRVGRGVTGIKFKA 694 Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI+ + Sbjct: 695 SEDCVIAATTITSDTDK------------------------------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LTVSE+G GK+T + ++R+ +R+GKG+ ++ + G LV+V +ND Sbjct: 712 ---------LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTP--KTGKLVSVVNINDE 760 Query: 851 D-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + +++++ G +IRV IR A R T GV I + +++V Sbjct: 761 NMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVG-NDKVA 802 Score = 94.9 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 19/239 (7%) Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731 + + LD+ DEI+ + +++ + K +F +S ++ + + +R L + Sbjct: 382 LIIALDNIDEIIRIIRASKDTE---EAKNALVEKFSLSELQA---KAILEMRLQRLTGLE 435 Query: 732 GDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D++ + A + A + + + + + + + +E S K + +E + Sbjct: 436 RDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDI 495 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-ND 849 ++L E+ ++T+S +G+ KR + NR GKG VS + F V N Sbjct: 496 EDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKG----KVSGNTHEDDFIESFFVANT 551 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D I+ V++KG L + V +I A R G V + + + DE++ + I ++ D+ Sbjct: 552 HDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKI--MATITTTDFNDD 608 >gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 807 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 363/843 (43%), Positives = 526/843 (62%), Gaps = 41/843 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + + I +EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MSDTM-------RGKVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G+ K Y K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD+S R L++G GNFGSV Sbjct: 54 HDLGITPEKPYKKSARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSV 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K + LL D+ K+T+D++ N+D + +EPVVL +R+PN+LVNG Sbjct: 114 DGDSAAAMRYTEVRMAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSA 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG VA+I+NP+I + LM I+GPDFPTG +ILGR GIK+A Sbjct: 174 GIAVGMATNIPPHNLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y+TGRG + IR + IE G++ +I+VTEIPYQVNKA ++E IA LVREK+I I+DLR Sbjct: 234 YSTGRGKLKIRAKTEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLR 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIELKR + +V+LNQLY+YT+L+ F + ++AL +P+ +L IL Sbjct: 294 DESDRDGLRVVIELKRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDH 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ F++EV++RRTKYLL KA RAH+L GL IA+ NLD V+++IR S + A+ LM Sbjct: 354 YLEFQKEVIIRRTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLM-- 411 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS+ Q +AIL++RL +LT L RD I E + L Sbjct: 412 ------------------------NNFSLSDKQAQAILDMRLQKLTALERDKIEEEYSEL 447 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I +L +L IIK+E+ +K++ RRT I ++++ED I E++++ Sbjct: 448 LKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVII 507 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GYVKRVPLS YR Q+RGG+G SG+ +++DFV LF STH +LFF++ G VY+ Sbjct: 508 TLTHQGYVKRVPLSTYRNQKRGGRGISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYR 567 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P S QARG A++N+L+++ E IT ++P E + Y+ F TK G ++ Sbjct: 568 LKVYEIPEASRQARGTAIVNLLAIDPDEHITAVIPIQEFT---EDDYLFFVTKQGVAKKV 624 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS+ + G IA+ L+ DE++ V + +I+L T+ G ++F +R GRN Sbjct: 625 ILSELKAYRKDGLIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSM-GRN 683 Query: 721 SVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S GV+GISL D+VI M I ++D Y K + S Sbjct: 684 SRGVKGISLKDNDRVIGMDIAQENSDLLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPS 743 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 GN++ + +++ I+ V+ +G R +R +G+R + +++ Sbjct: 744 EKSGNLA---GCIVVNEDEEIILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVV 800 Query: 840 ALV 842 +L Sbjct: 801 SLA 803 Score = 99.1 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 19/246 (7%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + I K D DE + E I+ T G R P+S R R Sbjct: 477 EKYSDSR-RTLITNKTDELDEE---DLIPDEEVIITLTHQGYVKRVPLSTYRNQK-RGGR 531 Query: 723 GVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G+ G++ D V + + ++ Y + Sbjct: 532 GISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAI 591 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD---FRISNRSGKGIRATDVSKIN 836 + +I+ + ++ ++ V+++G K+ + +R G+ A ++ N Sbjct: 592 DPDEHITAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRK-----DGLIAINL---N 643 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 E L+ V + +IIL +++G I+ E+R R ++GV S ++RV+ ++ Sbjct: 644 EDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKDNDRVIGMDI 703 Query: 897 IRESEI 902 +E+ Sbjct: 704 AQENSD 709 Score = 95.6 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 18/213 (8%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754 K G F +S + + + + L + D++ + +L Y+ + Sbjct: 407 KEGLMNNFSLSD------KQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGD 460 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + + + + +E S + + E ++L E+ I+T++ +G+ KR Sbjct: 461 EQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPL 520 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R G+GI + + L A + ++ I+ ++KG + R+ V EI AS Sbjct: 521 STYRNQKRGGRGISGMTTKNDDFVEHLFAT---STHNYILFFTNKGKVYRLKVYEIPEAS 577 Query: 875 RATKGVVIFST---AKDERVVSVERIRESEIVD 904 R +G I + DE + +V I+E D Sbjct: 578 RQARGTAIVNLLAIDPDEHITAVIPIQEFTEDD 610 >gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 928 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L++GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + G IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++G RT + R+ +G+ ++ + LV + V + ++ Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + + E + Sbjct: 893 DEVVDGVIVDVDVTDADEAGEDLQTDAAPDEDEPQ 927 >gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] Length = 856 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 345/899 (38%), Positives = 526/899 (58%), Gaps = 88/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ I S ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + N K+ Sbjct: 5 KDEVIVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKH 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+ISG+ G YHPHG IY L RMAQ W +R L++GQGNFGSVDGDPPAA RYT Sbjct: 65 RKCAKISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL AA L+DDL KDTV+ PNYD + +EP V +++PN+L NG GIAVGMATNIP Sbjct: 125 EARLTTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++ + +++NP +D +M+++ GPDFPTG +I G GIK A+ TGRG +++R Sbjct: 185 PHNLNELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYRGIKEAFHTGRGKLILR 244 Query: 252 GVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 GV +E+ DR ++ + EIPY VNK+ ++E IAEL+ K I I+DLRDESD+ G R Sbjct: 245 GVIRVEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMR 304 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG +VI+NQLY+++ LQ F NM+AL+ P + ++ ++ R +VV Sbjct: 305 IVIELKRGEVPEVIINQLYKFSDLQITFGCNMLALDKGLPRTMNVKQLISVWIEHRIDVV 364 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA RAH+L G A+ +LDEVVR+IR S N + AR EL+++ Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQ--------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q AIL+LRL +LTGL RD I +E L +I Sbjct: 416 -----------------FEFTERQANAILDLRLYQLTGLERDKINDEYQELLKKIDYLRA 458 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+S + + II++ELL ++ + R+T+I+ ++ ED I E +++T+S Y+K Sbjct: 459 VLASEAMVKEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P++ +R QRRGG+G +G+ ++ ED + L++ +TH +L F++LG Y KVW++P Sbjct: 519 RMPVNTFREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPE 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 +++GK LIN+L + E I S ++ ATK V+++ L++F Sbjct: 579 TGRKSKGKPLINLLEDIRPEE--KIATIQRVSSFEEEACILMATKRAVVKKSLLNEFSNP 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 R G A+ +D DE+++ E ++L T G VRF S +R GR + GV+G + Sbjct: 637 RRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPM-GRTARGVKGAT 695 Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D ++ +V ++ Sbjct: 696 LRGENDYIVGCEVVNGDES----------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V E GFGKR+ DFR +NR G G+R+ S+ N G ++ V Sbjct: 715 ------------ILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERN--GKVIGALCV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D D ++++S G +R+ +N++R+ R T+GV + + +++ +V++++++ SE E Sbjct: 761 TDEDGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSENQSEE 819 >gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 928 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L++GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + G IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++G RT + R+ +G+ ++ + LV + V + ++ Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + E + Sbjct: 893 DEVVDGVIVDVDVTNADEAGEDLQADAAPEEDEPQ 927 >gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70] gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s] gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923] gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2] gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150] gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023] Length = 836 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 348/905 (38%), Positives = 528/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL ++A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRTRI D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 63/409 (15%), Positives = 147/409 (35%), Gaps = 26/409 (6%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 + + ++ ++ + + +++R + + +A D++D+ Sbjct: 439 KVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIE 498 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRL--ARLTGLGRDDIRNELNSLGIEIKECLD 489 D+I D S I G Y+ + + E + +TG + L ++ + Sbjct: 499 DIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYL 558 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVT 541 ++ + +K L + + I E + + + Sbjct: 559 LIFTNFGQCYWLKVWQLPEGER-RAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFL 617 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+V L + + R+ G + ++ + I + V+ F+ LG + Sbjct: 618 ATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLFTRLGMAVRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 ++ ARG +++ + + + V+ +G +R+ Sbjct: 677 PHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVCDNGFGKRSL 728 Query: 662 LSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + DF + NR I + + D +L + T + ILL + GQ +R + +RV Sbjct: 729 VCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRINMQDVRVM- 786 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR + GVR ++L +GD +++M + + + + + I Sbjct: 787 GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] Length = 993 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 361/952 (37%), Positives = 529/952 (55%), Gaps = 88/952 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 I ++I DE++NSYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K Sbjct: 4 SEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ H Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EVV+ C+A +NP+I ++ LME I GPDFPTG +I G+ GI +AY TG+G + IRG Sbjct: 184 NMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGK 243 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD+ G R+ I Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKRG +A+V++N L++ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RR Sbjct: 304 DLKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W A ++ L++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423 Query: 433 LID------------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 D S G DG LS Q AILELRL RLTGL +D ++ E Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + +I E IL+ + L+ +IK+EL + + RRT IVE +D ED I E +V Sbjct: 484 ILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +TVS GY K PLS Y AQRRGG+G+S M+++D++ L + S H +VL F+++G VY Sbjct: 544 LTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVY 603 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + +V+ +P S ++G+ ++N+L L+ E IT I+P + + + + Sbjct: 604 RLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKE-------RLAEFKN 656 Query: 660 NKLSDFIQINRSGKIAMKLD-----------SRDEILSVE-------------------- 688 S+ + + I D DE+ Sbjct: 657 FVRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNET 716 Query: 689 ---------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 + + + T G R + F+ S G+R I L + D +I +A Sbjct: 717 VVEFADLAEKMRKNFFVFMATASGTVKRV---ELEQFSNVRSNGLRAIELKEEDTLIGVA 773 Query: 740 IVLHAD----------------------ADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 I + + M+ A + + S Sbjct: 774 ITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDE 833 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +SS S + + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 834 ESSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN- 892 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 G LV ++++ +++L+SD GTL+R +E+ R +GV + +E Sbjct: 893 -GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEE 943 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +++ + + ++L +EQ +LTVS+ G+ K D+ R G+G AT + Sbjct: 517 GDARRTAIVESRIDFSREDLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMK 576 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890 + + I L+ +++ ++ ++ G + R+ V E+ ASR +KG V + DE Sbjct: 577 EDDYIQHLI---VTSNHATVLCFTNVGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADET 633 Query: 891 VVSVERIRES 900 + ++ + ++ Sbjct: 634 ITAILPVIDA 643 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 22/265 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + G VKRV L + R G + +++ED + + I ++ FS+ G Sbjct: 732 FVFMATASGTVKRVELEQFSNVRSNG--LRAIELKEEDTLIGVAITDGEQQIMLFSNEGK 789 Query: 598 VYKEKVWRLPIGSPQARGKALI----------------NILSLNQGERITTIMPFPEDES 641 + + A+G + + + Sbjct: 790 AIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVV 849 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILL 698 V+ A+ +G +R + DF R G IA+K E++ + +++L Sbjct: 850 VPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDESKELML 909 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G VR S + GRN+ GVR I L + ++ + V + + D ++ Sbjct: 910 ISDGGTLVRTRASEV-ARTGRNAQGVRLIRLGNEEILVGVVAVEAVEVEDDILDASIETT 968 Query: 759 SAQRRLISGDTEEITSLKNDSSVEG 783 + ++S E Sbjct: 969 EETVVDEVNVDASENTTDTNTSNED 993 >gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] Length = 817 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 346/898 (38%), Positives = 500/898 (55%), Gaps = 89/898 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + + + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM++G+ N Sbjct: 7 EPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNT 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ GE MGKYHPHG++AIYD + RMAQD+S+R L++GQGNFGS+DGDP AA R Sbjct: 67 AYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + +L D+ +DTVD+ PN+D S QEP+ L A PN+L+NG GIAVGMATN Sbjct: 127 YTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDN--PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 IP HNL EVVD +ID +D+ ++ + GPDFPTG +ILGR GI +AY TGRG Sbjct: 187 IPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYRTGRGK 246 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +RG +HIE+ + IV+TEIPY VNK ++E IA+ V++K I + DLRDESDR+G Sbjct: 247 ITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREG 306 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIE+ R +++L QLYR T LQS F V +AL P+ ++ +L F+ R Sbjct: 307 LRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGYPKELSIEEMLNIFLNHRRS 366 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA RAH++ GL A+ +DEV+ +IR S E A+ L+ + Sbjct: 367 VVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISK------- 419 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + SE Q +AILE+RL RLTGL R+ + EL L +I+ Sbjct: 420 -------------------LDFSEAQAQAILEMRLQRLTGLEREKLEAELAQLLSDIERY 460 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL + L +IK+ELL VK R+T I++ + D+ ED I D+VV +S GY Sbjct: 461 QTILGNPKVLDSVIKEELLEVKRRFGNERKTEIIDAVEDVSIEDLIPESDIVVVLSRDGY 520 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 ++R L Y Q RGGKGR G +++ED V + + STH + F+S G V K + +P Sbjct: 521 LRRKDLQEYTLQGRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIP 580 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 RGK + ++L +GER+ T+ + Y F T G +R LS+ Sbjct: 581 ES-KTGRGKLINRFVALEEGERVVTM----HGRAVDGAKYAFFITLRGTAKRLDLSELEN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + R+G+ M LD DEI + + ++ +L+ T GQ +R S R GR + GVRGI Sbjct: 636 LTRAGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPM-GRTARGVRGI 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K D VI +V + Sbjct: 695 RLRKNDYVIGCDVVANG------------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ L +SE GFGKRT +F + +R G G+ ++S G +V + V Sbjct: 712 ----------RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLSDR--TGLIVGCWSV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + D+I+ ++ +G +IR+ V+E + R G ++ + + V + + + D+ Sbjct: 760 AEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTEDGEDD 817 >gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] Length = 879 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 347/908 (38%), Positives = 505/908 (55%), Gaps = 94/908 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G ++ Sbjct: 24 DDPHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDR 83 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA R Sbjct: 84 AFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPR 143 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMATN Sbjct: 144 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATN 203 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 IP HNL EV G + NP+ + LME I+GPDFPTGA ILG GI++AY TGR Sbjct: 204 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 263 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304 GSI +R V ++E+ R +VVTE+PYQ N + KIA+L++E ++ I+DLRDE S Sbjct: 264 GSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 322 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+VI LKR A V+LN LY++T LQ FS NM+A+ P +L ++ +V Sbjct: 323 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 382 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + +V+VRRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM Sbjct: 383 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM------ 436 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + E Q +AIL ++L RL L R I++ + L I Sbjct: 437 --------------------DFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 476 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543 E I++S R II +EL + + RRT I+ DM ED I E++VVT++ Sbjct: 477 SEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 536 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K Sbjct: 537 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 596 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + L A+G+ L N+L E I +M E + Y+V ATK G V++++LS Sbjct: 597 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYE---DAEYLVLATKGGLVKKSRLS 653 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNS 721 D+ +G IA+ L DE++S + E+DILL ++ G +RF + +R GR++ Sbjct: 654 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRST 712 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV G+ GD++IS +V+ Sbjct: 713 SGVTGMKFRDGDELISAQVVIP-------------------------------------- 734 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E F+ V+E G+ KRT +R+ R+G GI+ + + GAL Sbjct: 735 ---------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGAL 777 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++ND++++V G ++R V+E+ R T GV+ K + ++ + R ++ + Sbjct: 778 VGGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQ 837 Query: 902 IVDEAEST 909 + ++ E Sbjct: 838 LDEQKEDD 845 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 13/257 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + +V + G VK+ LS Y R G + +RD+D V F+VS +L Sbjct: 630 KTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAG--LIAINLRDDDEVVSAFLVSPEDDIL 687 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R + + + G+ + + +V Sbjct: 688 LISRNGMSLRFHANNESL-RPMGRSTSGVTGMKFRDGDELISAQVV------IPESFVFV 740 Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + + N G KL ++ ++ +++L+ + G+ VR Sbjct: 741 VTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSGKVVR 800 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S + GR+++GV KGD +I +A D + + + + S Sbjct: 801 TNVSEV-PAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQKEDDAEVEATEESVINSE 859 Query: 768 DTEEITSLKNDSSVEGN 784 + + +S + + Sbjct: 860 VVDTQENTPTTASTDVD 876 >gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13] gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40] gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 928 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L++GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + G IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++G RT + R+ +G+ ++ + LV + V + ++ Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + G + + + E + Sbjct: 893 DEVVDGVIVDVDGADADEAGEDLQADAAPDDDEPQ 927 >gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020] Length = 928 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 532/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 65.2 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 15/256 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL + QR G + + + D + I ++ FS G Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + K + ARG + + L +G+++ +++ ++ A++ G Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S+F + R G + + S + + +I+L + G VR + + Sbjct: 793 GKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I LA ++++ + V E + + + + Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVIDGVIVDAAEAEVGDA 911 Query: 774 SLKNDSSVEGNISEER 789 + + E + Sbjct: 912 GEDLQADAAPDEDEPQ 927 >gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 928 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 96/256 (37%), Gaps = 15/256 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL + QR G + + + D + I ++ FS G Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + K + ARG + + L +G+++ +++ ++ A++ G Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S+F + R G+ + + S + + +I+L + G VR + + Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I LA ++++ + V E + + + + Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVIDGVIVDAAEAEVGDA 911 Query: 774 SLKNDSSVEGNISEER 789 + + E + Sbjct: 912 GEDLQADAAPDEDEPQ 927 >gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642] Length = 926 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 67.9 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 101/255 (39%), Gaps = 15/255 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL + QR G + + + D + I ++ FS G Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + K + ARG + + L +G+++ +++ ++ A++ G Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S+F + R G+ + + S + + +I+L + G VR + + Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I LA ++++ + V E + + + + + Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVVDGVIVDAAEVDDAGE 911 Query: 774 SLKNDSSVEGNISEE 788 L+ D++ + + + Sbjct: 912 DLQADAASDEDEPQN 926 >gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464] Length = 826 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 363/895 (40%), Positives = 550/895 (61%), Gaps = 95/895 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIGDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F N +G A+ LD DE++S + + +L+ + LG ++FP+ +R GR Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREI-GR 684 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI L + D V+ ++ Sbjct: 685 TTRGVRGIRLNENDFVVGAVVISDDSNK-------------------------------- 712 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKGI +++ + G Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 82/524 (15%), Positives = 166/524 (31%), Gaps = 66/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGK 564 + ++ + + + +L+ +++V + + + R + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR--LPIGSPQARGKALINIL 622 ++ + MR + +G + L + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ R + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++ G KRT+ +F + G+RA + + LV+ V+ N +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIA 665 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R T+GV +++ VV I + Sbjct: 666 SYLGLFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDD 709 >gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] Length = 875 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 342/914 (37%), Positives = 508/914 (55%), Gaps = 104/914 (11%) Query: 1 MTEHIISSDEEEEKGITS----------VSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M++ + + I + + EMQ SYL YA+ VI+GRA+PD+RDGLK Sbjct: 1 MSDEQTPENAPMDGEIIEPIHEGGRVDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+L+ M G + Y KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW +R L Sbjct: 61 PVHRRVLYAMYDGGYRPERSYNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 GQGNFGS D AA+RYTE ++ A ++ D+ ++TVDF+ NYDG QEP VL AR Sbjct: 121 ALGQGNFGSPGNDGAAAQRYTETKMAPLAMEMVRDINENTVDFQDNYDGKNQEPTVLPAR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFP 226 +PN+LVNG GIAVGMATNIP HNL EV +G + NP+ L LM ++GPDFP Sbjct: 181 FPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLQNPEASREELLAELMLRVKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 +GA+ILG GI +AY TGRGSI +R V ++E+ R +VVTE+PY N + KIAE Sbjct: 241 SGAMILGTKGISDAYRTGRGSITMRAVVNVEEIQ-GRTCLVVTELPYMANPDNLAVKIAE 299 Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LVR+ +I IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+A+ Sbjct: 300 LVRDGKISGIADMRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIV 359 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P L G ++ +V + EV+VRRT+Y L KA + AH+L GL A+ LDEV+ +IR Sbjct: 360 DGVPRTLPLDGFIRHWVTHQIEVIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIR 419 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 S E AR LM+ + + E Q RAIL+++L RL Sbjct: 420 RSATTEAARDGLME--------------------------LLDIDEDQARAILDMQLRRL 453 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GL 524 L R I++ L I E I++ +R I+ +EL + + RRT+++ Sbjct: 454 AALERQKIQDRHAELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYD 513 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 DM ED I E+MVVT++ GYVKR + YR+Q RGGKG G +R +D V F+ S Sbjct: 514 GDMSVEDLIPEEEMVVTITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTS 573 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + L A+G+ + N+++ E I ++ + Sbjct: 574 THNWLLFFTNHGRVYRTKCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLRTY---QD 630 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 Y++ AT++G V++ +L D+ +G IA+ L DE++S + ++ +D++L ++ GQ Sbjct: 631 AAYLMLATRNGLVKKTRLEDYDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQ 690 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 VRF + +R GR + GV G+ +GD++++ +V Sbjct: 691 SVRFTATDTALRPM-GRATSGVTGMKFREGDELLAADVVRD------------------- 730 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 + ++ TV+ +G+ KRT+ ++R+ +R Sbjct: 731 ----------------------------------DSYVFTVTNEGYAKRTTVAEYRVQSR 756 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+ +++ E G LV V++ D++++V G ++R V+++ R T GV+ Sbjct: 757 GGLGIKVAKLNE--ERGELVGALIVDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIF 814 Query: 883 FSTAKDERVVSVER 896 K + +++V + Sbjct: 815 AKPDKKDHIIAVAK 828 >gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567] gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567] Length = 881 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 348/908 (38%), Positives = 507/908 (55%), Gaps = 94/908 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + I + + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++GM G ++ Sbjct: 26 DNPHGNIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDR 85 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KCARI G+VMG++HPHG++AIYDAL R+ Q W++R L GQGNFGS D AA R Sbjct: 86 AFNKCARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPR 145 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ A ++ D+ +DTVDF+PNYDG EP VL AR PN+L+NG GIAVGMATN Sbjct: 146 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATN 205 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 IP HNL EV G + NP+ + LME I+GPDFPTGA ILG GI++AY TGR Sbjct: 206 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 265 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304 GSI +R V ++E+ R +VVTE+PYQ N + KIA+L++E ++ I+DLRDE S Sbjct: 266 GSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 324 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+VI LKR A V+LN LY++T LQ FS NM+A+ P +L ++ +V Sbjct: 325 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 384 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + +V+VRRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM Sbjct: 385 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM------ 438 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + E Q +AIL ++L RL L R I++ + L I Sbjct: 439 --------------------DFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 478 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543 E I++S R II +EL + + RRT I+ DM ED I E++VVT++ Sbjct: 479 AEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 538 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K Sbjct: 539 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 598 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + L A+G+ L N+L E I +M E + Y+V ATK G V++++LS Sbjct: 599 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYE---DAEYLVLATKGGLVKKSRLS 655 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNS 721 D+ +G IA+ L DE++S + E+DILL ++ G +RF + +R GR++ Sbjct: 656 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRST 714 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV G+ GD++IS +V+ Sbjct: 715 SGVTGMKFRDGDELISAQVVIP-------------------------------------- 736 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E F+ V+E G+ KRT +R+ R+G GI+ + + GAL Sbjct: 737 ---------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGAL 779 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++ND++++V G ++R V+E+ R T GV+ K + ++ + R ++ + Sbjct: 780 VGGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQ 839 Query: 902 IVDEAEST 909 + ++ E Sbjct: 840 LDEQKEDD 847 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 13/257 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + +V + G VK+ LS Y R G + +RD+D V F+VS +L Sbjct: 632 KTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAG--LIAINLRDDDEVVSAFLVSPEDDIL 689 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R + + + G+ + + +V Sbjct: 690 LISRNGMSLRFHANNESL-RPMGRSTSGVTGMKFRDGDELISAQVV------IPESFVFV 742 Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707 T+ G +R + + N G KL ++ ++ +++L+ + G+ VR Sbjct: 743 VTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSGKVVR 802 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S + GR+++GV KGD +I +A D + + + + S Sbjct: 803 TNVSEV-PAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQKEDDAEVEATEESVINSE 861 Query: 768 DTEEITSLKNDSSVEGN 784 + + +S + + Sbjct: 862 VVDTQENTPTTASTDVD 878 >gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] Length = 811 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 356/844 (42%), Positives = 527/844 (62%), Gaps = 34/844 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + EE I I+ EM++SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M ++ + + Sbjct: 2 NMEENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+V+GKYHPHG++A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA Sbjct: 62 KPYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K + LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP HNLGE +D V +IDNPD D+D LM+ I+GPDFPTGA+I+G+ I AY TGRG + Sbjct: 182 SIPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE+ ++QIVVTEIPYQVNKA ++E+IAELV++KRI I+DLRDES+R G Sbjct: 242 KVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKR +A+++LN LY+++ L+ FS+ M++L P L IL +V +++V Sbjct: 302 RIVIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTK+ LNKA+ RAH+L GL IA+ +DEV+ +IR S N + A+ LM + Sbjct: 362 VTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q +AIL++RL +LTGL R+ + E N L +I+ Sbjct: 414 ------------------FKLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLE 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ LLG+IK E+L +K + RRT I +++ +D I E++ +T++H GY+ Sbjct: 456 SILADEQLLLGVIKDEILEIKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++QRRGG+G S + +R+EDFV L TH +LFF++ G V++ + +P Sbjct: 516 KRLPLDTYKSQRRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L E+I T++ D + ++ Y++ ATK G V++ K S+F I Sbjct: 576 GKRQAKGTAIVNLLQLGPNEKIATLIEV--DGRADDDSYLLLATKKGIVKKTKRSEFKNI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ V+T E D+LL T G +RF IR GR ++GV+GI+ Sbjct: 634 NKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPM-GRTAMGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L++GD+V+SM++ + + S ++ E Sbjct: 693 LSEGDKVVSMSLSDEGEDLLVVSQNGYGKRTDINEYRSQI--RAGKGIKTYNMSEKTGEI 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + E ++ ++ G R D + R G++ ++ +V++ ++ Sbjct: 751 VGATMVNNEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKT---DDEVNVVSIAKID 807 Query: 849 DNDQ 852 ++ Sbjct: 808 TEEE 811 >gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] Length = 867 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 345/924 (37%), Positives = 510/924 (55%), Gaps = 100/924 (10%) Query: 1 MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + + + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ Sbjct: 1 MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG Sbjct: 61 AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 + PAA RYTEC++ A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234 GIAVGMAT IP HNL E+ G +++PD + L+E +I GPDFPTGA ILG Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR+ I Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299 Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ FS NM+AL P + Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 + G ++ ++ + +V+VRRTK+ L KA +R H+L G A+ LDEV+ +IR SP + A Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LM+ + + +Q AIL L+L RL L R I Sbjct: 420 RAGLME--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L + + DIL+ R II EL + D+ RRTRI+ +M ED I Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT++ G+ KR YR+Q+RGGKG G +R +D V F+ +TH +LFF+ Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG VY+ K + +P G A+G+ + N+L+ E I ++ E + ++V +TK Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADFLVLSTK 630 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708 G V++ LS + G IA+ L DE++S +T + D++L ++ GQ VRF Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRF 690 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +R GR++ GVRG+ D+++SM + Sbjct: 691 TATEDQLRSM-GRSTSGVRGMKFRGDDELLSMEVPRDNTD-------------------- 729 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +L V+E G+ KRT ++ +R G Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVDEYPTKSRGTLG 756 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 +R + ++E G LV V ++ ++++++ G L++V +++R +R T GV+ Sbjct: 757 VRVGKL--VDERGDLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814 Query: 887 KDERVVSVERIRESEIVDEAESTE 910 + +R++++ R +S DE + +E Sbjct: 815 EGDRIIAITRNPDSGDEDETDESE 838 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 14/257 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588 D +V + G VK+ PLS+Y + R GG + ++ +L Sbjct: 618 TYEDADFLVLSTKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADED 677 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ S G + R + + + + E +N + Sbjct: 678 LILVSRDGQAVRFTATE-DQLRSMGRSTSGVRGMKFRGDDE------LLSMEVPRDNTDL 730 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705 + T+ G +R + ++ +R DE + + D+++ T+ G+ Sbjct: 731 LIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGDLVGALVVRPDEDVMVITESGKL 790 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 V+ S +R RN++GV +GD++I++ + + + Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDEGDRIIAITRNPDSGDEDETDESENTESMEGTDAP 849 Query: 766 SGDTEEITSLKNDSSVE 782 + + + + + Sbjct: 850 ADEASAPAGGDDTADTD 866 >gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076] gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race 4] gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 928 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + E + Sbjct: 893 EEVIDGVIVDAAEAEVGDAGEDLQADAAPDEDEPQ 927 >gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1] gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC] gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC] Length = 830 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 344/899 (38%), Positives = 530/899 (58%), Gaps = 91/899 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FL++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ PD+ ++ ++E++ GPDFPTG +I G GI++ Y TGRG I + Sbjct: 183 PPHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKV 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ + E I++TE+PY VNK+ ++E+IA+LV +K + I+D+RDESD+ G R Sbjct: 243 RARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A+V R EV+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWVRHRTEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ LD+VV IR S + E A+ +L+++ Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q+ AILELRL +LTGL + I+ E + L +I Sbjct: 414 -----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKR 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ + II+ EL ++ TPRRT I + ED I E +++T+S YV Sbjct: 457 VLADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E N ++ ATKHG V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ +V +++ ++L T+LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V++ IV Sbjct: 693 GVSLKNEKDRVVACQIVRDD---------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +V++E++ +E Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816 >gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] Length = 830 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 344/899 (38%), Positives = 529/899 (58%), Gaps = 91/899 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FL++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ PD+ ++ ++E++ GPDFPTG +I G GI++ Y TGRG I + Sbjct: 183 PPHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKV 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ + E I++TE+PY VNK+ ++E+IA+LV +K + I+D+RDESD+ G R Sbjct: 243 RARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ +V R EV+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISVWVRHRTEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ LD+VV IR S + E A+ +L+++ Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q+ AILELRL +LTGL + I+ E + L +I Sbjct: 414 -----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKR 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ + II+ EL ++ TPRRT I + ED I E +++T+S YV Sbjct: 457 VLADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 517 KRMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E N ++ ATKHG V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ +V ++E ++L T+LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V++ IV Sbjct: 693 GVSLKNEKDRVVACQIVRDD---------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +V++E++ +E Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816 >gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32] Length = 828 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 360/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++ ++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEAYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + ++ +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIRLNEDDFVVGAVVISDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 99.9 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 89/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L + RL + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SPRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILV 856 + + ++ G KRT+ +F SNRS GIRA + + LV+ V+ D +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R T+GV+ +D+ VV I + Sbjct: 668 SYLGIFIKFPLEDVREIGRTTRGVIGIRLNEDDFVVGAVVISDD 711 >gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16] Length = 828 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 359/896 (40%), Positives = 545/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++V+LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELIADLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV++ V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSIISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 96.8 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 100/272 (36%), Gaps = 61/272 (22%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 ++ N VV + G V+R L + + NR GK++ D I + Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749 + +L T GQ + I A R ++G V ISLA +++ MA + D Sbjct: 555 HDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD---- 607 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E+ + ++ G Sbjct: 608 --------------------------------------------FSDERSLAFFTKNGVV 623 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVN 868 KRT+ +F SNRS GIRA + + LV+ V+ N +++ S G I+ P+ Sbjct: 624 KRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIASYLGIFIKFPLE 679 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++R R T+GV+ +++ VV I + Sbjct: 680 DVREIGRTTRGVIGIRLNENDFVVGAVVISDD 711 >gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d] Length = 828 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 358/896 (39%), Positives = 546/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELIIDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL+ E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + ++ +L+ + LG ++F + +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIKLNENDFVVGAVVINDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKG+ +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 94.5 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 61/272 (22%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 ++ N VV + G V+R L + + NR GK++ D I + Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749 + +L T GQ + I A R ++G V ISL +++ MA + D Sbjct: 555 HDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLDPDEKI--MATLSTKD---- 607 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E+ + ++ G Sbjct: 608 --------------------------------------------FSDERSLAFFTKNGVV 623 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVN 868 KRT+ +F SNRS GIRA + + LV+ V+ D +++ S G I+ + Sbjct: 624 KRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIASYLGLFIKFSLE 679 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++R R T+GV+ +++ VV I + Sbjct: 680 DVREIGRTTRGVIGIKLNENDFVVGAVVINDD 711 >gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] Length = 885 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 355/897 (39%), Positives = 530/897 (59%), Gaps = 58/897 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I D M +YL Y+++V +GRAIPD+RDGLKPV+RRIL+ M Q+G+ + VKCAR+ Sbjct: 10 QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEVMGKYHPHG+AAIYDAL R+AQD+S+R LIEGQGNFG++DGDP AA RYTECR+++ Sbjct: 70 VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ KDTV+ PN+D S EP VL ARYP +LVNG GI VGMAT+IP HNLGE Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D + ++DNP +D LME + GPDFPTGA+I GR ++ Y TG GSI IR + I Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSIKIRAKADII 249 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKR 316 + REQI+V+EIPY + K +++KIAELV +KRI I+ LRDES ++ G R+VIE+KR Sbjct: 250 E-KDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIKR 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 GA V+LNQL+ +T L++ M+ ++ +P L+ +L+A++ R EV+VRRT + Sbjct: 309 GAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRLEVIVRRTLFE 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA+ RAH+L GL A+AN+++VV+IIR S + + A L+ R Sbjct: 369 LKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 +++Q AIL++RL +LTGL + + E L I+ + +SR Sbjct: 413 ----------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREM 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 LG+IK EL ++++ PRRT I D+ D I R V+TVS+ GY+KRVP Y Sbjct: 463 QLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R Q RGGKG G+ ++ED V LF +H + FF+ GF+Y V+ +P GS +G+ Sbjct: 523 RTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGR 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A+ N++ + GE+I ++ ++E N Y+V A++ G +++++L+ F + R G A+ Sbjct: 583 AITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRAL 642 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLA-KGD 733 ++ D+++ N+ILL+TK G F IR GR + GV G+ +GD Sbjct: 643 VIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPM-GRTARGVTGMRFKIEGD 701 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S+ I+ EE + VE + + + Sbjct: 702 SVVSLEIIREH-----------------------LYEEPAEDEEGEEVEVEVDVDEEMPV 738 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++ G GKR+ +R + R KG+ + + +++V + + D+I Sbjct: 739 VGSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGET---VLSVVQITEEDEI 795 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +L +++G L+R+P +EIR RA+ GV I + +R+ V ++ E ++ + E Sbjct: 796 LLTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEE 852 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T G +R+ +S + + R G + +KL + +LSV T+E++ILLTT+ GQ Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGETVLSVVQITEEDEILLTTERGQL 804 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VR P IR GR S GVR ++L GD++ +A ++ D S++ Sbjct: 805 VRIPAHEIR-RVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEEGGAESSETPAE 863 Query: 766 SGDTEEITSLKNDSSVEGNISE 787 E + + E Sbjct: 864 VPVAEIPATEPAEDGANPPAGE 885 >gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a] gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a] gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 925 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 15/270 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 D + +S E Sbjct: 893 ELVDGVIVDAAEVDDAGEDLQADAASDEDE 922 >gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 925 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + D + +S E Sbjct: 893 ELVDGVIVDAVEVDDAGEDLQADAASDEDE 922 >gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250] gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 928 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L +G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + + E + Sbjct: 893 EEVIDGVIVDAAEVEVDDAGEDLQADAAPDEDEPQ 927 >gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115] gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A) (DNA topoisomerase II) [Deinococcus deserti VCD115] Length = 811 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 352/891 (39%), Positives = 520/891 (58%), Gaps = 86/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+ G+ N+K+ K Sbjct: 3 GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+++IYDA+ R+AQ W++R ++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A L+ DL K+TVD +PNYD + +EP VL A PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID+P++ LD LME + GPDFPTG I +TGI+ AYATG + +RG + Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRIT-KTGIREAYATGHSGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313 IE+ R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR+ R+V+E Sbjct: 242 RIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA ++LNQLY+YT LQ+ ++V +++ G +P L+ ++ F+ R +VV RRT Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQTTYTVINLSIVGGEPRVLPLLNTMQYFLDHRADVVTRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA +RAHVL GL A+ ++DEV+ +IR S AR LM R Sbjct: 361 RYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVR------------- 407 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E+Q++AIL++RL RL GL R+ ++ E + L I+ IL Sbjct: 408 -------------FGLTEIQSQAILDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGD 454 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L IK+E+ +++D RR+ I E D+ ED I EDMV+T++ GY+KR L Sbjct: 455 EKLLWREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKL 514 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP A Sbjct: 515 DAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G + N+L I +FAT+ G V++ ++++ I +G Sbjct: 575 KGTHIRNLLP--SLREDENIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNITSAGL 632 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ L DE++ V + ++L T+ G+ +RF +R GR + GV GI L +G Sbjct: 633 IAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRA-TGRATQGVIGIRLREGE 691 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+SMA+V D + Sbjct: 692 DDAVVSMALVPGGDEASE------------------------------------------ 709 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G GKRT D+ R G G+ DV++ + G LV + V N+ Sbjct: 710 --------LLAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTE--KTGKLVTLARVAGNE 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++++++KGT+IR V E+R+ R +GV + + A+ + V+S IR + Sbjct: 760 ELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRREDE 810 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 96/268 (35%), Gaps = 68/268 (25%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705 V+ TK G ++R KL + R G+ + KL D V + + +L T G+ Sbjct: 500 VITMTKAGYLKRTKLDAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRV 559 Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760 I + AGR++ G I L + + + S+ V D Sbjct: 560 FHEKIYDL-PEAGRDAKGTH-IRNLLPSLREDENIASVLSVGGFD--------------- 602 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI 819 FI + KG K+T ++ I Sbjct: 603 ----------------------------------EPGCFI-FATRKGVVKKTLITEYGNI 627 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 ++ G+ A ++ L+ V VND D ++L + G +R +E+R RAT+G Sbjct: 628 TS---AGLIAINLQPG---DELIGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQG 681 Query: 880 VVIFST--AKDERVVSVERIRESEIVDE 905 V+ +D+ VVS+ + + E Sbjct: 682 VIGIRLREGEDDAVVSMALVPGGDEASE 709 >gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] Length = 812 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 359/893 (40%), Positives = 516/893 (57%), Gaps = 86/893 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I S SI DEM SY+ Y+++VI+GRAIPD+RDGLKPV R+ILFGM+++G+ N+ Y K Sbjct: 3 EEIISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEVMGK+HPHG+ AIYDAL RMAQ +S+R LI+GQGNFGS+D DPPAA RYTE Sbjct: 63 SARIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEA 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+Q+ A LL D+ K+TV PN+DGS EP VL A+ PN+L+NG GIAVGM TNIP H Sbjct: 123 RMQRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+V+ A+IDNPD ++ LME ++GPDFPTG +I+GR GIK Y TGRG +V+RGV Sbjct: 183 NLSELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGV 242 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ G +IV++EIPY V+KA ++++IA + + R + + ++RDESD++G RVVIE Sbjct: 243 AEIEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372 LKRGA +V+LN LY++T LQ+ F +M+ ++ K P+ L I +AF+ R EVV RR Sbjct: 302 LKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L +A +AH+L GL A +D VV IIR S N + A L + Sbjct: 362 TEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQE------------- 408 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 T+ ++ Q++AILE+RL +LT L D + E L +IKE +ILS Sbjct: 409 -------------TLEITPEQSQAILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILS 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + IIK+EL ++ + RRT+I D ED I +++VVTV+ GY+K Sbjct: 456 DDKNIYQIIKKELQELEAQYGDARRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKAT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL YR Q RGGKG GV D DFVT++ + + + +S G Y + L S Sbjct: 516 PLEDYRKQGRGGKGIRGVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RGK L N + + E + ++ +E N +++ T+ G ++R FI S Sbjct: 576 SSRGKLLANYVKIEPDETVQAVLSVKREE--VANKHLIITTRKGKIKRTPFEAFINSRTS 633 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ L+ D ++ T +E I+++T+ G +RFPIS IR GR + GV+ ++L Sbjct: 634 GIKAITLNEGDSVVDAGISTSEEETIIISTRKGMVIRFPISQIRPM-GRTAAGVKAMALR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+S IVL D Sbjct: 693 GDDEVVSATIVLPVD--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+++ T +E+G GKRT ++R +R+G G++ + G +V V + Sbjct: 708 ------ERYLFTATERGVGKRTPLSEYRPQHRAGMGVKNIYGLER--TGYVVGSLVVTNE 759 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D+II+++ G IR+P +IR R TKGV + D+ V S+ + + V Sbjct: 760 DEIIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASLAVVVDQAEV 812 >gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] Length = 831 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 352/913 (38%), Positives = 524/913 (57%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ +E + + SV + DEM+ SY+ YA++VI GRA+PD+RDGLKPVH+RIL+ M Sbjct: 1 MSSDTSDLPDEVAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + GV N + K + I G+ MG +HPHG+ +IYDALARMAQ +S+R LI+GQGNFGSV Sbjct: 61 HRSGVTSNASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + +L D+ DTVDF+PNYDG +EP VL + PN+L+NG Sbjct: 121 DGDPPAAMRYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TNIP HNLGEV+D V +IDNPD ++ LME ++GPDFPTGA I+GR I A Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIVGRNAIHQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R ++ ++IV+TE+P+Q NKA ++++IA+ V + I I DLR Sbjct: 241 YKTGRGRLRVRAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+ELK+ A +V+ NQL + L+ FS+ +AL +P+ TL +L+ Sbjct: 296 DESDRDGIRVVVELKQNAIPEVVENQLLNH-RLERTFSIISLALVDGQPKVLTLKELLQH 354 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ R +VV RR+++ L++A +RAH+L G A+ N+D+VV +IR + + + AR Sbjct: 355 YLDHRRDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARS----- 409 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 G GT SE Q I+ ++L LT L ++I E + Sbjct: 410 ---------------------GLQGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDV 448 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ IL S LLG+IK+ELL +K++ RRT+IVE ++ ED I ED+ V Sbjct: 449 TARIERLETILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSEVTREDLIAEEDVFV 508 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 V+ YVKR+P+ + AQ RGGKG G ++++D V+ +F +TH +L F++ G VY+ Sbjct: 509 VVTEQDYVKRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYR 568 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARGK+ +NIL L++GE IT ++ E E + + T+ G V+R Sbjct: 569 LKTYEIPEMSRTARGKSAVNILDLDKGEDITAVITTDEFE---EDESLSMVTQQGYVKRT 625 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +F I +G IA +L+ D+++ V+ D+L++TK G +RF + R GR+ Sbjct: 626 AAKEFENILSTGIIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREM-GRS 684 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L D+V+ M D Sbjct: 685 ARGVHGIRLDDDDEVVGMVAANGDVDD--------------------------------- 711 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +LTV+ +G+GKRT ++R +R+GKG+ N G Sbjct: 712 -------------------LLTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRN--GH 750 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + + V ++D ++L+S++G ++R+ +I R T GV + +D+RV SV+ I Sbjct: 751 VTEIKTVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAE 810 Query: 901 EIV---DEAESTE 910 D+AE+ E Sbjct: 811 AAEAVPDDAETAE 823 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 133/394 (33%), Gaps = 35/394 (8%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + L + + E++ +I+ + +R+ D + + D Sbjct: 451 RIERLETILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSE----VTREDLIAEEDV 506 Query: 446 TMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 + ++E + + + + GR + + + ++ LL Sbjct: 507 FVVVTEQ--DYVKRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHG 564 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS--------------HLGYVKR 550 + + P +R G + D ED+ ++ GYVKR Sbjct: 565 QVYRLKTYEIPEMSRTARGKSAVNILDLDKGEDITAVITTDEFEEDESLSMVTQQGYVKR 624 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + G + D D + D+ + +L + G + Sbjct: 625 TAAKEFENILSTG--IIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREMG 682 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG + L+ + + ++ D ++ T+ G +R KL+++ +R Sbjct: 683 RSARGVHG---IRLDDDDEVVGMVAANGDVDD-----LLTVTRRGYGKRTKLTEYRSQSR 734 Query: 671 SGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +GK + + + D V +++ ++L ++ GQ +R I GRN++GV + Sbjct: 735 NGKGLIDIKTGDRNGHVTEIKTVIEDDHLVLMSERGQIMRIRAEDISEV-GRNTMGVTVM 793 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 + + D+V S+ ++ A+ S Sbjct: 794 DVDEDDRVASVDVIPAEAAEAVPDDAETAEESEP 827 >gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] Length = 894 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 343/897 (38%), Positives = 532/897 (59%), Gaps = 84/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + G++ + + EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+ + Sbjct: 65 TDPINGLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSS 124 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R L++G GNFGS+DGD AA R Sbjct: 125 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMR 184 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +LD + KDTV+F NYD S EPVVL +R+PN+LV+G GIAVGMAT Sbjct: 185 YTEARMSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATE 244 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E ++ +A NP+I LME I+GPDFPTGA ILG GI +AY TG+G I Sbjct: 245 IPPHNLTETINATIAFARNPEITTKELMEHIKGPDFPTGATILGVKGIYDAYETGKGKIP 304 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + + +I++TEIPY V K ++EKI EL ++K + I +LRDES+R+G R Sbjct: 305 LRSQAKIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIR 364 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+G +A ++LN+LY+ + LQ+ + N+VAL +P+ L IL ++ + EVV Sbjct: 365 IVIDVKKGYNAHILLNKLYQKSYLQTNVNANLVALVHGEPKLLNLKQILSIYLDHQIEVV 424 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L KA+D+ H+L GL IAV+N+DEVV+II+ S N A+ L +R Sbjct: 425 TRRLKFDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKR--------- 475 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ QT+AIL++ L RLTGL + + E++ L EI Sbjct: 476 -----------------FNLSDRQTKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKG 518 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL SR L+ +I EL ++D RRT+I E + DED I ++V+T S GYV Sbjct: 519 ILESREALINLIIDELSEIRDRFGDERRTQIDEFTVSSISDEDLIPVNNIVITTSVKGYV 578 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y Q RGG G S + D+D ++ + +THT ++ F++LG VY+ + ++P Sbjct: 579 KRMKLEDYNMQNRGGIGVSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPE 638 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS Q++G INI+ + ++ + ++ ++V T+ G +++ LS++ I Sbjct: 639 GSKQSKGTPFINIIPSLNEKEGEKVVSLLSVDEYNDDHFLVTITEKGVIKKTALSEYESI 698 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +GK A +L D +++ T EN+IL+ + V+F +R + RNS GVRGI Sbjct: 699 RSNGKNAFRLKEDDHLVNAFIVTDENEILIASNGKNVVKFSSLDLRPLS-RNSQGVRGIR 757 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + +VI+ + Sbjct: 758 LDENKKVIAAS------------------------------------------------- 768 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L +FIL++ KGFGK T S +FR+ R GKG+ A + ++ G L+ VN Sbjct: 769 ----SDLDGEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAIN---ADKAGDLIFAKFVN 821 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ND+ ++++ GT IR+ ++++ + SRATKGV I + +++ +++VE ++ E +++ Sbjct: 822 KNDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEEEMED 878 >gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894] gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894] Length = 856 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 362/939 (38%), Positives = 522/939 (55%), Gaps = 116/939 (12%) Query: 1 MTEHII----SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ I E + V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+ Sbjct: 1 MTDEIPGGIPELPEVHHGHVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 ++ M G ++ + KCAR+ G+VMGKYHPHG++AIYDA+ R+ QDWSLR L+ GQGN Sbjct: 61 IYAMYDGGYRPDRGFSKCARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTECR+ A ++ D+ KDTVDF+ NYDG QEPVVL AR+PN+LV Sbjct: 121 FGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLV 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV +G + +P+ + LM+ ++GPDFPTGA IL Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQIL 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 G GI+ AY TGRGSI +R V ++E+ +R +VVTE+PYQVN + KIA+LV + R Sbjct: 241 GTKGIEEAYRTGRGSITMRAVVNVEEIQ-NRICLVVTELPYQVNPDNLAAKIADLVNDGR 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P Sbjct: 300 LQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ + + EV+ RRT YLL A R H+L G A+ LD+V+ +IR SP+ + Sbjct: 360 LSLDAFIRHWTTHQMEVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDAD 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM+ + + E+Q AIL L+L RL L R Sbjct: 420 QARAGLME--------------------------LLEIDEIQANAILNLQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I +E ++ EI + DIL+ R I+ +EL + ++ RRT I+ DM ED Sbjct: 454 RIIDEHAAIEAEITDLQDILAKPERQRSIVGEELDGIVEKYGDERRTHILPYDGDMSMED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I E++VVT++ GY KR YR Q+RGGKG G +R++D V F+ +TH +LF Sbjct: 514 LIPEEEVVVTITRGGYAKRTRSDAYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP GS ++G+ + N+L+ GE I ++ + + Y+V A Sbjct: 574 FTNFGRVYRAKGYELPEGSRDSKGQHVANMLAFQPGEHIAQVLDLRDYD---AAEYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCV 706 T+ G V++ +L ++ +G IA+ L DE++ D++L ++ GQ + Sbjct: 631 TRRGLVKKTRLQEYNSPRSAGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKGQSI 690 Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RFP + +R GR + GV G+ +GD+V++ A+V Sbjct: 691 RFPAADESLRPL-GRATSGVTGMKFREGDEVLTAAVVRE--------------------- 728 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT--SSYDFRISNR 822 + F+ TV+E G KRT S ++R R Sbjct: 729 --------------------------------DAFLFTVTESGLAKRTELSVDNYRQQGR 756 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GIR ++ + E G LV V+D+D+++++ ++G ++R V E+R R T+GV Sbjct: 757 GGLGIRVANLPE--ERGDLVGALVVDDDDEVLVIMERGKIVRSAVAEVRATGRTTQGVTF 814 Query: 883 FSTAKDERVVSVER------------IRESEIVDEAEST 909 K +R+++V R + ES VDEA+ Sbjct: 815 AKPDKGDRIIAVARNVERREEEESASVDESVPVDEADDD 853 >gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 928 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 530/885 (59%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEAELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + G IA++LD D + Sbjct: 663 NSNETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 + + G VK+ PL + QR G + + + D + I ++ FS G Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 V + K + ARG + + L +G+++ +++ ++ A++ G Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S+F + R G+ + + S + + +I+L + G VR + + Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GRN+ GV I LA ++++ + V E + + + + E Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSLVEGEELEGEEVVDGLVAGVIDADVEDA 911 Query: 774 SLKNDSSVEGNISEER 789 + + E + Sbjct: 912 GEDLQADAAADDDEPQ 927 >gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] Length = 844 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 364/836 (43%), Positives = 528/836 (63%), Gaps = 37/836 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E +T ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPSSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D++ NYDG +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +A+ PDI + LMEII GPDFPT +ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE S +E I+V EIPYQVNKA ++EKIAELVR+K++ I DLRDESDR G R Sbjct: 243 LRAKVDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A VILN LY+ T+LQ+ F +NM+AL +P+ L LK ++ ++ V+ Sbjct: 303 IVIEVRKDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA+ RAH+L GL IA+ +LDEV+ +IR S E AR LM + Sbjct: 363 RRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I +E SL I E Sbjct: 414 -----------------FELSDKQAQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL +K+ + RRT IV G+ +EDED I RE++V+T++H GYV Sbjct: 457 ILADEEKVLEIIREELTEIKERFNDERRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S YRAQ+RGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S A+G +IN+L +N+ E + ++P E + ++ F TK G +R+ L+ F I Sbjct: 577 FSRTAKGIPIINLLGINKDEWVNAVIPVEEFV---DEWFLFFTTKEGISKRSPLTSFGNI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV +I++ TK GQ +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALNLREGDELISVRLTDGSKEIIIGTKNGQLIRFPETDVRSM-GRTATGVKGIT 692 Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+V+ M ++ +++ + Y K + G + N + G I Sbjct: 693 LDSDDEVVGMEVLEENSEILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVA 752 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E+ I+ ++ G R + D R+ +G+R ++ + G VA Sbjct: 753 VKVV---TGEEDIMLITTGGVLIRMAVGDISTMGRNTQGVRLIRIN--DSEGEYVA 803 >gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 928 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 376/885 (42%), Positives = 532/885 (60%), Gaps = 52/885 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Sbjct: 3 ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I + Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242 Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 R S +E R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EV Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422 Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ S +G +LS Q +AILELRL RLTGL + + E + Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VV Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642 K + +P S ARG+ L+N+L L+ GE ITT++P + Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662 Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 ++ +T +G V++ L F + SG IA++LD D + Sbjct: 663 NSSETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +S E +I+L + G+ RF S +R GR + GVRG+ L++G ++ISM I Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLSEGQKLISMLIPEEG 781 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +A + S+ Q L +E I+ +S Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++G RT + R+ +G+ ++ + LV + V + Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 + E + + + G VK+ PL + QR G + + + D + Sbjct: 665 SETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 I ++ FS G V + K + ARG + + L++G+++ +++ Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLSEGQKLISML--- 776 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694 ++ A++ G +R +S+F + R G+ + + S + + Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +I+L + G VR + + GRN+ GV I LA ++++ + V E + Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + + + + E + Sbjct: 893 EEVIDGVIVDAAEAEVGDAGEDLQADAAPDEDEPQ 927 >gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30] Length = 828 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 359/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRTKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR I+ S +PE A+ L++R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + LG ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R++ GVRGI L + D V+ ++ Sbjct: 686 RSARGVRGIKLNENDFVVGAVVINDDSNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IR+ + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRISIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 97.6 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + + II P + + + + I+ I + +G Sbjct: 243 RVKVRTKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S V + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L S + RL + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++ G KRT+ +F SNRS GIRA + + LV+ V+ N +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R+ +GV +++ VV I + Sbjct: 668 SYLGIFIKFPLEDVREIGRSARGVRGIKLNENDFVVGAVVINDD 711 >gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori 35A] Length = 828 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 357/896 (39%), Positives = 544/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL R+ I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + G ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVIGDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 96.4 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L + RL + Sbjct: 423 SKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++ G KRT+ +F SNRS GIRA + + LV+ V+ N +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R T+GV+ +++ VV I + Sbjct: 668 SYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIGDD 711 >gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57] Length = 828 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 358/896 (39%), Positives = 544/896 (60%), Gaps = 95/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK+G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718 LS+F I A+ LD DE++S + + +L+ + G ++FP+ +R G Sbjct: 627 NLSEFGSNRSYSGIRAIVLDKGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-G 685 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV GI L + D V+ ++ Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L+VSE G GK+T + +R +R GKGI +++ + Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751 Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 G LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805 Score = 98.7 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 89/524 (16%), Positives = 174/524 (33%), Gaps = 64/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L S + RL + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ + I A R ++G V ISLA +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++ G KRT+ +F SNRS GIRA + ++ LV+ V+ N +++ Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVL---DKGDELVSAKIVDKNAKHLLIA 667 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ P+ ++R R T+GV+ +++ VV I + Sbjct: 668 SYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDD 711 >gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835] Length = 873 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 351/912 (38%), Positives = 526/912 (57%), Gaps = 73/912 (8%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V + E+ S+L Y+++VI+ RA+PD+RDGLKP RRIL+ M ++ + K Sbjct: 2 ENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKT 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC++I G+ MG YHPHG+AAIY L MAQDWS+R +L+ GQGNFG+ DGDPPAA RYT Sbjct: 62 RKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E +L L+ DL KDTVDF P YD EP V + +PN+LVNGG GIAVGMATN+P Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVDG AVIDNP + ++ L + I+GPDFPTG +LG +GI N + TGRGS+ IR Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E T ++ +++ E+PY VN+AA+ E+IAEL ++K + DI+ +RD SD + + Sbjct: 242 GKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEK-TCIE 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A V++NQLY+ TS+++ F+VNM+A++ +P+ ++ + ++ R EVVVR Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+YLL A A L +A+ ++D+ + IIR S N + AR L +++ + L Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LI + G +E Q +IL+LRL +LT L D I E L + IK+ LDIL Sbjct: 421 ILIRSQASIQGDR--YVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDIL 478 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ SR+LGI+K EL ++KD+ TPR TRI+ DM ED I + M+VT++H GY+KR Sbjct: 479 ANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITHSGYIKRT 538 Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 + YR Q RGGKG R + DF+ LF H ++FF++ G VY ++V+ Sbjct: 539 NSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYE 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF--------PEDESSWNNLYVVFATKHGNV 657 + + A+G+ + N+L L E I I+ + + + VVFATK G V Sbjct: 599 IDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTV 658 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L+DF ++G IA+ L+ + +++ E + ++I+L T G +RFP +R Sbjct: 659 KKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDLRT-Q 717 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN++GVRGI GD V+++AIV Sbjct: 718 GRNTIGVRGIRPRAGDYVVALAIVD----------------------------------- 742 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++ +L SE G GKRTS ++R R G GI+ + + ++ Sbjct: 743 ------------------PQKTLLVASENGLGKRTSFDEYRTQGRGGTGIKTMNCT--DK 782 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V+ V+D D+++L++ G +R+ V +R RAT+GV + + + E + + + Sbjct: 783 TGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEGESIQDISIV 842 Query: 898 RESEIVDEAEST 909 + +EA + Sbjct: 843 IPDDEDEEAPAE 854 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 86/238 (36%), Gaps = 15/238 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 VV + G VK+ L+ + R+ G + + +L S ++ + G Sbjct: 648 NVVFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAEL--TSGADEIVLVTHDGM 705 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + L G I R ++ A+++G Sbjct: 706 SIRFPEEDLRTQGRNTIGVRGI---------RPRAGDYVVALAIVDPQKTLLVASENGLG 756 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R ++ R G ++ D+ +S + E++++L T GQ VR ++ +R Sbjct: 757 KRTSFDEYRTQGRGGTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVR 816 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 GR + GV+ ++L +G+ + ++IV+ D D + + + E Sbjct: 817 E-TGRATQGVKLMTLNEGESIQDISIVIPDDEDEEAPAETEDAGAGEVSGEMEAPAEE 873 >gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1] gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 836 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 347/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRT+I D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 62/409 (15%), Positives = 146/409 (35%), Gaps = 26/409 (6%) Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 + + ++ ++ + + +++R + + + D++D+ Sbjct: 439 KVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIE 498 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRL--ARLTGLGRDDIRNELNSLGIEIKECLD 489 D+I D S I G Y+ + + E + +TG + L ++ + Sbjct: 499 DIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYL 558 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVT 541 ++ + +K L + + I E + + + Sbjct: 559 LIFTNFGQCYWLKVWQLPEGER-RAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFL 617 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G VK+V L + + R+ G + ++ + I + V+ F+ LG + Sbjct: 618 ATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLFTRLGMAVRF 676 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 ++ ARG +++ + + + V+ +G +R+ Sbjct: 677 PHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVCDNGFGKRSL 728 Query: 662 LSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + DF + NR I + + D +L + T + ILL + GQ +R + +RV Sbjct: 729 VCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRINMQDVRVM- 786 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 GR + GVR ++L +GD +++M + + + + + I Sbjct: 787 GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 847 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 368/904 (40%), Positives = 546/904 (60%), Gaps = 68/904 (7%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S + K + VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G Sbjct: 1 MSELAKANKILIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGN 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +WNK Y K ARI G+V+GKYHPH + A+YDA+ RMAQ +SLR +L++GQGNFGS+DGD Sbjct: 61 DWNKPYKKSARIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K AH LL DL KDTV++ PNYD + Q P V+ R PN+L+NG GIAVG Sbjct: 121 AAMRYTEVRMSKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL E++DGC+A ID+ I ++ LM+ I GPDFPT A+I G+ GI+ AY TGR Sbjct: 181 MATNIPPHNLFEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAIINGKQGIEEAYRTGR 240 Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 G I IR + +E + + RE IVV+EIPYQVNKA ++EKIA+L++EKRI I+ LRDESD Sbjct: 241 GKICIRARAIVEVEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESD 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G R++I +KR A A+V+LN LY T LQ FS+NMVALN +P+ F+L IL AF+ Sbjct: 301 KDGMRIIIGIKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQPKIFSLKEILSAFICH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R++++ RRT + L KAR+R H+L L +A AN++ ++ + R + P A+ +L+ +WN Sbjct: 361 RQDIITRRTIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNL 420 Query: 425 SDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 I + DG YL+E Q +AIL+LRL LT L + E Sbjct: 421 GTIASMQCREVHHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIE 480 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L +I + L IL+ RL+ +I++EL ++ + PRRT I ++ ED I +E Sbjct: 481 HKELLTKIVDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKE 540 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 ++VVT+S+ GYVK PL+ Y AQ+RGGKG+S V M++EDF+ L + +TH ++L FSS G Sbjct: 541 NVVVTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRG 600 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 +Y KV++LP S +RG+ ++N+L L ERITTI+P Sbjct: 601 RMYWMKVYQLPAASRGSRGRPIVNLLPLETNERITTILP--------------------- 639 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V + ++ + T G + +A+ F Sbjct: 640 ------------------------------VRQYEEGCNVFMATASGTVKK---TALIAF 666 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 + S G+ ++L +GD++I + + + + + Y K + + T ++ Sbjct: 667 SRPRSAGIIAVNLHEGDELIGVNVT-NGNNEVMLFSAYGKVVRFPETQVRSMGRTATGVR 725 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + EG + + ILTV++ G+GKRT+ ++ +R+ +G+ + S+ N Sbjct: 726 GINLAEG--DRVVSLIIPNIDGHILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERN 783 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G ++ V+++DQI+L++D GTL+R V+E+ I R T+G+ + TA++E VV ++R Sbjct: 784 --GQVIGAIQVDEHDQIMLITDAGTLVRTRVSEVSIVGRNTQGITLIRTAENEHVVGLQR 841 Query: 897 IRES 900 I E Sbjct: 842 IAEP 845 Score = 71.0 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 6/159 (3%) Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 D + + + R ++ + + S +++ KE ++T+S + Sbjct: 490 DLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTLSYQ 549 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+ K D+ R GKG A + + + I +L N +D I+L S +G + + Sbjct: 550 GYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSL---LVANTHDTILLFSSRGRMYWMK 606 Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 V ++ ASR ++G V + +ER+ ++ +R+ E Sbjct: 607 VYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEE 645 >gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] Length = 867 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 345/924 (37%), Positives = 511/924 (55%), Gaps = 100/924 (10%) Query: 1 MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ ++ + + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ Sbjct: 1 MSDEQTTNARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG Sbjct: 61 AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 + PAA RYTEC++ A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234 GIAVGMAT IP HNL E+ G +++PD + L+E +I GPDFPTGA ILG Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR+ I Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299 Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ FS NM+AL P + Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 + G ++ ++ + +V+VRRTK+ L KA +R H+L G A+ LDEV+ +IR SP + A Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R L++ + + +Q AIL L+L RL L R I Sbjct: 420 RAGLIE--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L + + DIL+ R II EL + D+ RRTRI+ +M ED I Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT++ G+ KR YR+Q+RGGKG G +R +D V F+ +TH +LFF+ Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG VY+ K + +P G A+G+ + N+L+ E I ++ E + ++V ATK Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADFLVLATK 630 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708 G V++ LS + G IA+ L DE++S +T + D++L ++ GQ VRF Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRF 690 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 +R GR++ GVRG+ D+++SM + Sbjct: 691 TATEDQLRSM-GRSTSGVRGMKFRGDDELLSMEVPRDNTD-------------------- 729 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +L V+E G+ KRT ++ +R G Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVDEYPTKSRGTLG 756 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 +R + ++E G LV V ++ ++++++ G L++V +++R +R T GV+ Sbjct: 757 VRVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814 Query: 887 KDERVVSVERIRESEIVDEAESTE 910 + +R++++ R +S DE + +E Sbjct: 815 EGDRIIAITRNPDSGDEDETDESE 838 Score = 74.4 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 14/257 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588 D +V + G VK+ PLS+Y + R GG + ++ +L Sbjct: 618 TYEDADFLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADED 677 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ S G + R + + + + E +N + Sbjct: 678 LILVSRDGQAVRFTATE-DQLRSMGRSTSGVRGMKFRGDDE------LLSMEVPRDNTDL 730 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705 + T+ G +R + ++ +R DE + + D+++ T+ G+ Sbjct: 731 LIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKL 790 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 V+ S +R RN++GV +GD++I++ + + + Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDEGDRIIAITRNPDSGDEDETDESENTESMEGTDAP 849 Query: 766 SGDTEEITSLKNDSSVE 782 + + + + + Sbjct: 850 ADEASAPAGGDDTADAD 866 >gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] Length = 836 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRTRI D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERKAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + + G VK+V L + + R+ G + ++ + I + V+ F Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + LG + ++ ARG +++ + + + V+ Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719 Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +G +R+ + DF + NR I + + D +L + T + ILL + GQ +R Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + +RV GR + GVR ++L +GD +++M + + + + + I Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266] gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266] Length = 851 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 345/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ Sbjct: 15 SDYDRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRG 74 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS D PAA RY Sbjct: 75 YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRY 134 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TECRL A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG GIAVGMATNI Sbjct: 135 TECRLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNI 194 Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL E+ D +++NPD D L+A ME I+GPDFPT +I+G GIK+AY TGRG Sbjct: 195 PPHNLRELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGTQGIKDAYTTGRG 254 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305 SI +RGV+ IE+ R+ IV+TE+PYQVN ++ IAE VR+ ++ I+ + DE SDR Sbjct: 255 SIRMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +VA + Sbjct: 314 VGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQ 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR S + ARR L+ Sbjct: 374 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLI------- 426 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + + EVQ AIL ++L RL L R I +EL + I Sbjct: 427 -------------------DLLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+S R I++ EL + D+ RR++I+ D+ +ED I RE++VVT++ Sbjct: 468 DLKDILASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITST 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + Sbjct: 528 GYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYE 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ + N+L ERI ++ E + Y+V AT G V++++LSD+ Sbjct: 588 LPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATVQGRVKKSRLSDY 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723 G IA+ L+ D+++ C+ E+D+LL ++ GQ +RF +R GR++ G Sbjct: 645 ESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPM-GRSTAG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V Sbjct: 704 VKGMRFRGDDHLLAMTVVRDG--------------------------------------- 724 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L + G+GKRTS ++ + R G G+ + + G L+ Sbjct: 725 --------------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIG 768 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V+D+DQI ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 769 ALAVDDDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 821 Score = 86.4 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 96/231 (41%), Gaps = 23/231 (9%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVI 736 DE++++ ++ D+ + G I ++ + + + L + ++I Sbjct: 406 DEVIALIRRSETVDV---ARRGLIDLLTIDEVQ------ADAILAMQLRRLAALERQKII 456 Query: 737 S-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +A + AD + + R + + S + + ++L Sbjct: 457 DELAEIEAIIADLKDILASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIA 516 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854 +E ++T++ G+ KRT ++ R GKG+R ++ + +V F V + +D I+ Sbjct: 517 RENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWIL 572 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902 ++ G + R+ E+ ASR +G + + + +ER+ V +I+ E Sbjct: 573 FFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 623 >gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 812 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 345/898 (38%), Positives = 505/898 (56%), Gaps = 89/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ + + I +E++ SYL YA++VI+GRA+PD +DGLKPV RRIL+ MM++G+ Sbjct: 2 AESSNIGKVLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRS 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y K ARI GE MGKYHPHG+AAIYDA+ RMAQD+S+R L++GQGNFGS+DGDPPAA Sbjct: 62 NQPYRKSARIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL +L D+ +DTVD+ PN+D + QEP+VL + PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EVVD +ID D++L ++E++ GPDFPTG I GR GI NAY TGRG Sbjct: 182 TNIPPHNLSEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTITGREGIINAYRTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 IV+RG IE+ + ++VTEIPY VNK ++E IA V+E + IADLRDESDR Sbjct: 242 KIVLRGRVSIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRD 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIEL+R A ++L QLY T LQ+ F V +AL P LI +LK F+ R Sbjct: 302 GIRVVIELQRDADPHLVLKQLYSRTPLQTTFGVINLALVDGVPRELGLIELLKIFLDHRR 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRT Y L KA +RAH++ GL A+ +DE++ +I+ S + + AR LM Sbjct: 362 DVVRRRTNYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLM-------- 413 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +E+Q +AIL++RL RLT L R + EL L +I+ Sbjct: 414 ------------------DNFGFTELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEM 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL + S L ++K+EL +K + R+T IV+ L+++ D++ I ED+VV +S G Sbjct: 456 YHSILENPSVLDSVVKEELTELKRQYGDARKTEIVDELVEVADDELIPEEDIVVVLSKDG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y++R L Y Q RGGKG G+ +D++ + H L F+S G V+ K + L Sbjct: 516 YLRRASLGDYHLQGRGGKGIKGLKQKDDEVEMFAATTTHHDIFL-FTSKGRVFAIKGYLL 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +GK + + +L + ER+ I ++++ +V FAT+ G +R +S+ Sbjct: 575 PE-PKNGKGKHVSSFFTLEENERVVAI----KEDTMHGARFVFFATERGIAKRLDVSELA 629 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R+G+ + LD D I V + E+++L + GQ +R R GR + GVR Sbjct: 630 NLTRAGRRVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPM-GRQARGVRA 688 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L++ D ++ + A Sbjct: 689 IRLSESDVLVGCEPLQEGMA---------------------------------------- 708 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL +SEKG GKRTS +F + +R G G+RA +S G+LV + Sbjct: 709 -------------ILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLSSR--TGSLVGAWS 753 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V ++D++++V+ KG + R+ V + + SR G ++ + + V + +R+ + + Sbjct: 754 VTEDDEVMIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRDDAMEE 811 >gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX] gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276] gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s] gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX] gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768] gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222] gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301] gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC] gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC] Length = 836 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRTRI D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + + G VK+V L + + R+ G + ++ + I + V+ F Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + LG + ++ ARG +++ + + + V+ Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719 Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +G +R+ + DF + NR I + + D +L + T + ILL + GQ +R Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + +RV GR + GVR ++L +GD +++M + + + + + I Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074] Length = 836 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 348/905 (38%), Positives = 526/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+I EL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRTRI D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + + G VK+V L + + R+ G + ++ + I + V+ F Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + LG + ++ ARG +++ + + + V+ Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719 Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +G +R+ + DF + NR I + + D +L + T + ILL + GQ +R Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + +RV GR + GVR ++L +GD +++M + + + + + I Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7c] Length = 832 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 360/905 (39%), Positives = 532/905 (58%), Gaps = 88/905 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E I ++E E GI + ++ M++S+L Y+++VI+ RA+PD+RDGLKPV+RRIL+ M + Sbjct: 11 EPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYAMNK 70 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G VK A+I GEVMG YHPHG+++IYDA+ +AQ W +R L+EGQGNFGS+DG Sbjct: 71 NGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGSMDG 130 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE R+ K LL D+ K+TVDFR N+DG+ +EPVVL + PN+L+NG GI Sbjct: 131 DEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQMGI 190 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGEV+D VA IDNP+I LD L+ I+GPDFPTGA + G ++ AY Sbjct: 191 AVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGGAPMRQAYE 250 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGS+ IR V+ IE+ R I+VTE+PY ++K ++K+ ELV K+I IAD RDE Sbjct: 251 TGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIADARDE 310 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361 S R RVV+ELK+ A ILNQLY+ T LQ+ F N++AL +P+ L IL F Sbjct: 311 SARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEILAEF 370 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + R+ V+ RRT++ L KA++RAH+L GL IA+ ++DEV++ IR S + A + LM+R Sbjct: 371 IKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYD--DADKRLMER- 427 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 LSE+Q AIL ++L RL GL RD I +EL L Sbjct: 428 -------------------------FGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLH 462 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540 IK+ IL+S +L ++K ELL++KD+ RR++I+ DE+ I E+ V+ Sbjct: 463 ELIKKLEAILASEQEILNVVKTELLAMKDKYGDERRSKIINHELGKFSDEELIPEEESVI 522 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ Y+KR +S YR Q RGGKG+ G+ ++ED + + STH +LFF+++G +++ Sbjct: 523 LLTSENYIKRTLVSDYRRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFR 582 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S A+G A +N+L L E+IT I+ ++++ + Y+ AT+ G V++ Sbjct: 583 LKAYEVPAASLSAKGVAAVNLLQLQPEEKITAII--KHEKNANDKGYLFMATQKGTVKKT 640 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + D+ + +G IA+KLD DE+ ++ + +ND++++T GQ +RF R GR+ Sbjct: 641 PVKDYANVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPM-GRS 699 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L D V+ M IV D Sbjct: 700 ARGVRGVRLRPNDSVVGMDIVTGDD----------------------------------- 724 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +L VSEKGFGKRT +F R G GI+A V+ + G Sbjct: 725 -----------------QTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTA--KTGP 765 Query: 841 LVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++V ++ + +LVS G IR+ +++I++ R T+GV I + + V S+ + + Sbjct: 766 IISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSIGLMAD 825 Query: 900 SEIVD 904 + Sbjct: 826 RPQDE 830 >gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] Length = 830 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 347/909 (38%), Positives = 529/909 (58%), Gaps = 95/909 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRILF M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A L++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ PD ++ ++E++ GPDFPTG +I G GI++ Y TGRG I + Sbjct: 183 PPHNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R HIE+ + E I++TE+PY VNK+ ++E+IA+LV +K + I D+RDESD+ G R Sbjct: 243 RARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S+++++N+LY++T +Q F NM+AL+ P + ++ A++ R EV+ Sbjct: 303 VVLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ LD++VR IR S + E A+ +L++ Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q+ AILELRL +LTGL + I+ E + L +I Sbjct: 413 ----------------NFGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINKIAYYKR 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ + II+ EL ++ TPRRT I + ED I E +++T+S YV Sbjct: 457 VLADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDIITNEPVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 517 KRMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E N ++ ATK G V++ L F Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKQGVVKKVSLDAFS 633 Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE++ +V ++E ++L T+LG VRFP +R GR + GVR Sbjct: 634 NPRKKGIRALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D+V++ IV Sbjct: 693 GVSLKNEKDRVVACQIVKDD---------------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q +L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RES 900 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + +V++E++ E+ Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVAMEKLSLNGEET 817 Query: 901 EIVDEAEST 909 E EST Sbjct: 818 LSGIEEEST 826 >gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda] Length = 878 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 374/850 (44%), Positives = 532/850 (62%), Gaps = 22/850 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +LN LY T +Q F +NMVAL+ +P+ L L+AFV R EVV RRT Sbjct: 307 VKRDAVGRGVLNNLYTQTQMQVSFGINMVALHQGQPKLLDLKECLEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++ED + L + +TH ++L F S G +Y K+++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRGRMYWMKMYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 L S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ + DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H + + + + + E N Sbjct: 723 GIKLAGEDRVVSL-IVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNG 781 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843 S +++ +Q I+ +++ G RT + I + +G+ ++ +V Sbjct: 782 SVVGAVQVEDCDQ-IMMITDAGTLVRTRVSEVSIVGCNTQGVILIRTAEDE---HVVGLQ 837 Query: 844 --VFPVNDND 851 V PV+D D Sbjct: 838 RVVEPVDDED 847 Score = 65.2 bits (157), Expect = 6e-08, Method: Composition-based stats. Identities = 54/411 (13%), Positives = 138/411 (33%), Gaps = 36/411 (8%) Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + LL++ + + L + + + ++ +IR + ++ +A + + Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREEL------IAIREQFGDARRTEITANT 525 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILS 492 D + + + ++ + L+ R ++ ++ + L + + Sbjct: 526 ADINIEDLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVAN 585 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV---------- 542 + +L + + +R G + E + + Sbjct: 586 THDTILCFFSRGRMYWMKMYQLAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN 645 Query: 543 ----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 + G VK+ L+ + R G DE DL + V+ FS G V Sbjct: 646 VFMATASGTVKKTALTEFSRPRAAGIIAVNPNYGDELIGVDL--TDGNDEVMLFSVAGKV 703 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + K + A G + + L +R+ +++ ++ T++G + Sbjct: 704 VRFKEDAVRAMGRTATG---VRGIKLAGEDRVVSLI------VPHGEGAILTVTQNGYGK 754 Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R+ ++++ +R+ + + + ++ + I++ T G VR +S + Sbjct: 755 RSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTLVRTRVSEV-S 813 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 G N+ GV I A+ + V+ + V+ D D ++ Sbjct: 814 IVGCNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864 >gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] Length = 911 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 344/908 (37%), Positives = 506/908 (55%), Gaps = 110/908 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC Sbjct: 30 RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 89 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR Sbjct: 90 SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 149 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP HN Sbjct: 150 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 209 Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV G +D+P+ + L+ II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 210 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 269 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 270 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 328 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A VILN LY++T LQ F NM+AL P +L ++ +++ + EVV Sbjct: 329 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 388 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTKYL +A +R H+L G A+ ++EV+ +IR SP+ + AR LM Sbjct: 389 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------- 437 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + +VQ AIL ++L RL L R I +E L +I + D Sbjct: 438 ---------------DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 482 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R I+ E+ + D+ RRTRI+ +M ED I E++VVTV+H GY+K Sbjct: 483 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 542 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P G Sbjct: 543 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 602 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L L E+I ++ + + Y+V AT+ G +++ +L+++ Sbjct: 603 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYD---EAKYLVLATRSGKIKKTRLNEYDSTR 659 Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712 + G IA++L DE++ C E++I++ ++ G V+F Sbjct: 660 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 719 Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+ + D ++SM +V Sbjct: 720 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVVP-------------------------- 752 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + ++ V+ +GF KRT+ ++R+ R+G G++ Sbjct: 753 -------------------------AESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVK 787 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ + G+LV V+++DQI+ + G +IR V EI+ R T+GV + K Sbjct: 788 AINLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 845 Query: 889 ERVVSVER 896 + ++S+ R Sbjct: 846 DEIISIAR 853 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ ADY++ + + A + + + + E ++L +E + Sbjct: 473 LMRKIADYNDILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVV 532 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +TV+ G+ KRT + ++R +R GKGI+ T + + + + F + ++ ++ +++G Sbjct: 533 VTVTHSGYIKRTKADEYRAQHRGGKGIKGTRLREDDVVDH---FFLTSTHNWLLFFTNEG 589 Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902 + R+ E+ SR +KG + + DE++ V I + + Sbjct: 590 RVYRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHDYDE 634 >gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] Length = 874 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 365/927 (39%), Positives = 539/927 (58%), Gaps = 137/927 (14%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E++++ + + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENLLN----QNQDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+ Sbjct: 57 NNLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ +L D+ KDTVDF PNYD EP VL +R PN+L+NG Sbjct: 117 DGDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+L E++DG + V++N + L+ +ME I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIFGKKGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +HIEK +++ IVV E+PYQ NKA ++E+IAELV+EK+I I+++R Sbjct: 237 YRTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + +AR L+ + Sbjct: 356 FLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q AIL++RL++LTGL R+ + EL L Sbjct: 416 --------------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAEL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +IL S + L +IK ELL +K++ PR T IV+ D++ ED I E+MVV Sbjct: 450 MAEIARLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++ L E+I I+P + + + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFA---QSKSLAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695 LS+F I G A+ LD DE+++ E + Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQID 686 Query: 696 ----------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732 + + TK G C++F +S +R GR + GV GI + G Sbjct: 687 EENSNDGDKNGERTESDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAG 745 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ A++ + Sbjct: 746 DEVVGAAVIENNA----------------------------------------------- 758 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 Q +L+VS+KG GKRT++ ++R++NR GKG+ ++ N G L+ V V++ Sbjct: 759 -----QEVLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDEEQD 811 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG 879 ++ ++ G +IRV + IR A R T G Sbjct: 812 LMALTSSGKMIRVDMQSIRKAGRNTSG 838 >gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] Length = 848 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 337/888 (37%), Positives = 524/888 (59%), Gaps = 81/888 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ + + Sbjct: 3 EGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD + N+D + +EP VL R P +L+NG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG A IDN D+ +D LME ++ PDFPTG I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ RE I+VTEIPYQVNKA M++K A+++ +K+I I+ +RDESDR G R+V Sbjct: 243 AKAEFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +KR A +++LN+L++YT+LQS FSVN +AL +PE L ++ FV R EVVVR Sbjct: 302 YVIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA RAH+L GL IA N+DEV+ IIR S N + AR+ L++R Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R+E + I++ DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + II++EL +KD+ RR+ I D+ D I + +V+T+S+ GY+KR Sbjct: 456 AKKERRMSIIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++G+A+ N++++ Q + + + + Sbjct: 576 TSKGRAIQNLINIEQDDEVKAFVCTGD--------------------------------- 602 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLA 730 L D I + I++ TK GQ + + R + G+ I++ Sbjct: 603 ------LKDEDYI-------NNHYIIMATKKGQVKKTALEQYSRPR----TNGINAITIK 645 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+++S + ++ + K + + + ++ + Sbjct: 646 DNDELLSAK-LTTGESQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGM 704 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + E IL VSEKG+GKR+S D+RI+NR GKG++ V++ + G LV++ V D Sbjct: 705 VSVNDTESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVSIKNVTDA 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D +++++ G IR+ V +R+ RAT+GV + + ++ + +V +++ Sbjct: 763 DDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVK 810 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 22/210 (10%) Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760 RF +S I+ + + + L + D++ S ++ D + + + + Sbjct: 410 RFKLSEIQ------AKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMS 463 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 R + ++ + S +E + +L ++ ++T+S G+ KRTS +++ Sbjct: 464 IIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTEYKTQ 523 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKG 879 NR G G +A+ + + L V N Q +L + KG + V EI S+ +KG Sbjct: 524 NRGGVGTKASTTRNEDFLEHL----FVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579 Query: 880 ---VVIFSTAKDERVVSVERIRESEIVDEA 906 + + +D+ V + ++ DE Sbjct: 580 RAIQNLINIEQDDEVK--AFVCTGDLKDED 607 >gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20] Length = 826 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 359/895 (40%), Positives = 548/895 (61%), Gaps = 95/895 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL+ E+I + + + + F TK G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F N +G A+ LD DE++S + + +L+ + LG ++F + +R GR Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREI-GR 684 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 ++ GV GI L + D V+ ++ Sbjct: 685 STRGVIGIKLNENDFVVGAVVINDDSNK-------------------------------- 712 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKG+ +++ + G Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 750 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803 Score = 87.5 bits (215), Expect = 9e-15, Method: Composition-based stats. Identities = 84/524 (16%), Positives = 171/524 (32%), Gaps = 66/524 (12%) Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 + A + II P + + + + I+ I + +G Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 + E++ A+ E+ L L L + + L I KE L + ++ Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562 + ++ + + + +L+ +++V + S + L + Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 K + ++ + I + ++L S + RL + Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680 S + E ++ N VV + G V+R L + + NR GK++ Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737 D I + + +L T GQ R + I A R ++G V ISL +++ Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLDPDEKI-- 599 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA + D E Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856 + + ++KG KRT+ +F + G+RA + + LV+ V+ N +++ Sbjct: 612 RSLAFFTKKGVVKRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIA 665 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 S G I+ + ++R R+T+GV+ +++ VV I + Sbjct: 666 SYLGLFIKFSLEDVREIGRSTRGVIGIKLNENDFVVGAVVINDD 709 >gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] Length = 808 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 356/837 (42%), Positives = 513/837 (61%), Gaps = 36/837 (4%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y Sbjct: 5 QGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE Sbjct: 65 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF PNYD S +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 125 VRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV+DG + +ID+PD +D LM++I+GPDFPT +ILG+ GI+ AY TGRG I +R Sbjct: 185 HNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S + +I+VTE+PYQVNKA ++EKIA+LVR+K+I I L DESDR G R+VI Sbjct: 245 NARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A+A+VILNQLY++T LQ F V M+AL KP+ L +L ++A +E+V+ RR Sbjct: 305 DLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR L+ Sbjct: 365 TRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALIS------------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 412 -------------GFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+L IIK EL +VK + RRTR+ +++ ED I ED+V+T++H Y+KR+ Sbjct: 459 DEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMA 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR Q RGGKG G+ +++DFV +L I +TH ++LFF++ G VY K + + S Sbjct: 519 LDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRA 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A+IN+L L + E+IT ++ + Y+ ATK G V++ L +F +++ G Sbjct: 579 AKGTAIINLLQLEKDEKITAVIQVKGFN---PDAYLFMATKKGIVKKTSLVEFKNLHKGG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ E D++L TK G + F +R GR + GV+GISL G Sbjct: 636 LNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAM-GRAARGVKGISLNDG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI M + + + + + + V + Sbjct: 695 DEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLI--NLKVTEKTGDVIGLR 752 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +Q ++ ++ +G RT+ D + +R+ +G++ + + +VA V D Sbjct: 753 VVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGEND----IVASMAVMD 805 Score = 99.1 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 9/218 (4%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 +E+ ++ T R + R R G++G+ + D V ++ I Sbjct: 498 LIAEEDVVITLTHNNYIKRMALDTYR-RQNRGGKGIKGMPTKEKDFVENLLITTTHHTIL 556 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + Y + I+ + + ++ ++ Sbjct: 557 FFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATK 616 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG K+TS +F+ ++ G+ A ++ ++ L+ V + +IL + G I Sbjct: 617 KGIVKKTSLVEFKNLHKG--GLNAINL---DDDDELIGVKFTDGERDMILGTKWGMAIVF 671 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +++R RA +GV S + V+ ++ + + V Sbjct: 672 GEDDVRAMGRAARGVKGISLNDGDEVIGMDTLSPNAEV 709 >gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] Length = 882 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 354/930 (38%), Positives = 514/930 (55%), Gaps = 107/930 (11%) Query: 1 MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + D E + V + EMQ SYL YA++VI+GRA+PD RDGLKPVH Sbjct: 1 MADETHGEDHTPEDAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G ++ Y KC+R+ G+VMG+YHPHG++AIYDAL R+ Q W++R LI+G Sbjct: 61 RRVLYAMYDGGYRPDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS D AA RYTEC++ + ++ D+ +DTVDF+ NYDG QEPV L AR+PN Sbjct: 121 QGNFGSAGNDGAAAPRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV G ++ +PD D +E II+GPDFP GA Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR GI++AY TGRGSI R V +E+ R +VVTE+PY VN + KIA V+ Sbjct: 241 TILGRKGIEDAYRTGRGSITQRAVVEVEEIQ-GRTCLVVTELPYMVNPDTLANKIASYVK 299 Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IADLRDES R G R+VI LKR A A V+LN LY++T LQ FS NM+AL Sbjct: 300 DGKVAGIADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDNV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P ++ L+ +V + +V+VRRT++ L KA +RAH+L G A++ LDEV+ +IR SP Sbjct: 360 PRTLSIDAFLRLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 + + AR LM+ + + E+Q AIL+L+L RL L Sbjct: 420 SSDEARTGLME--------------------------LLDVDEIQANAILDLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDM 527 R I E + IK+ +IL++ +R I+ +EL +V RRT+I D+ Sbjct: 454 ERLKIEEEAQKIEELIKDYNEILATPARQREIVSEELDAVVQRYGDDRRTKILAGFDGDV 513 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I E++VVT++ GY KR ++YRAQ RGGKG +G +R +D V F+ STH Sbjct: 514 SMEDLIPEEEVVVTITRGGYAKRTQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHN 573 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +LFF++ G VY+ K + LP G A+G+ + N+L+L E I ++ P+ + Y Sbjct: 574 WLLFFTNTGRVYRAKAYELPEGMRDAKGQHVANLLALQPDEEIAEVLSIPDYD---AAQY 630 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKL 702 ++ ATK G V++ +LS++ G IA+ L DE++S E+ +LL ++ Sbjct: 631 LMLATKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRK 690 Query: 703 GQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 G +RF IR GR + GV G+ D +++M +V Sbjct: 691 GMSIRFAADDSTIRP-TGRATSGVTGMKFKGEDTLLTMDVV------------------- 730 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 ++ V+E GF KRT ++R+ Sbjct: 731 ----------------------------------TPGTYVFVVTEAGFAKRTPVEEYRLQ 756 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R G GI+ +++ + G LV V++ D + +V + G ++R ++E+ R T GV Sbjct: 757 GRGGFGIKVAKITE--QRGDLVGGLIVSEGDDVFVVMEMGKVVRSKIDEVPAKGRNTMGV 814 Query: 881 VIFSTAKDERVVSVERIRESEIV-DEAEST 909 V K +R+++V R E+E + DE + + Sbjct: 815 VFAKPGKKDRIIAVTRGPEAEDILDEVDES 844 Score = 71.0 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 16/252 (6%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFSSLGFVY 599 + G VK+ LS Y + R GG + + +L +L S G Sbjct: 635 TKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRKGMSI 694 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + I P R + + + + + T+ YV T+ G +R Sbjct: 695 RFAADDSTI-RPTGRATSGVTGMKFKGEDTLLTMDVVT------PGTYVFVVTEAGFAKR 747 Query: 660 NKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 + ++ ++ G +K+ E ++ ++ +D+ + ++G+ VR I + Sbjct: 748 TPVEEY-RLQGRGGFGIKVAKITEQRGDLVGGLIVSEGDDVFVVMEMGKVVRSKIDEV-P 805 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN++GV K D++I++ A+ DE + + + Sbjct: 806 AKGRNTMGVVFAKPGKKDRIIAVTRGPEAEDILDEVDESTVSDAELDGESVDSDQSTETQ 865 Query: 776 KNDSSVEGNISE 787 + S+ + E Sbjct: 866 DDQSAETQSADE 877 >gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] Length = 852 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 360/904 (39%), Positives = 536/904 (59%), Gaps = 113/904 (12%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MENLFNKDSDTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD Sbjct: 61 GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E+VDG + ++DN + L+ LM+ I+GPDFPT +I G+ GI +AY TGR Sbjct: 181 MATNIPPHSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I IR +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I IA++RDESDR Sbjct: 241 GRIKIRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ R Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 360 KTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I++EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLDEILKSEALLEDLIREELKEIRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTSDFA---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCT---------------------------QENDILL 698 I G A+ LD DE+++ + Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFA 690 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKH 757 TK G C++FP++ +R GR S GV I + D+++ ++ + Sbjct: 691 VTKRGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEN-------------- 735 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 EQ +L+VS KG GKRT++ ++ Sbjct: 736 --------------------------------------DEQEVLSVSAKGIGKRTNAGEY 757 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ +R GKG+ ++ ++ L++V V+++ ++ ++ G +IRV ++ IR A R T Sbjct: 758 RLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNT 815 Query: 878 KGVV 881 GV+ Sbjct: 816 SGVI 819 >gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1] gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1] Length = 812 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 352/891 (39%), Positives = 515/891 (57%), Gaps = 85/891 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDG+KPV RRI++ M+Q G+ N K+ K Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM +YHPHG+++IYDA+ R+ Q W++R L++ QGNFGS+DGD AA RYTE R Sbjct: 63 ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L DL K+TVD +PNYD + EP VL + PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+IDNP I LD +M ++GPDFPTG I + GI+ AYATG + +RG + Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRIA-KVGIREAYATGHAGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 IE+ R QI+++EIPYQ+NK +L+ I+ + + +I DI LRDESDR + R+VIE Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 314 LKRGA--SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A ++LNQLY+YT LQS ++V +++ +P LI ++ F+ R +VV R Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KA++RAHVL GL A+ ++DEV+ +IR S AR LM R Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AIL++RL RL GL R+ ++ E + L I IL Sbjct: 411 ---------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 L IK+E+ ++D RR+ I E D+ ED I EDMV+T++ GYVKR Sbjct: 456 GDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ YR Q+RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP Sbjct: 516 NLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G + N+L I +FATK G ++++ ++D+ I + Sbjct: 576 DAKGTHIRNLLP--GLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSA 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE++ V+ +D++L TK GQ +RF + +R GR + GV GI L + Sbjct: 634 GLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRD-TGRATQGVIGIRLRE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+SMA+V D Sbjct: 693 GDEVVSMALVPGND---------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +E +L +SE G GKRT D+ R G G+ DV+ ++ G LV + V N+ Sbjct: 707 ----EEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVT--DKTGKLVTLAHVAGNE 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++++++KGT+IR V E+R+ R +GV + + +RV+ IR+ + Sbjct: 761 ELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKEDE 811 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 64/265 (24%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705 V+ T+ G V+R L+ + + R G+ + L D V + + +L T G+ Sbjct: 503 VITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRV 562 Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760 I + AGR++ G I L + + S+ V D Sbjct: 563 FHEKIYDL-PEAGRDAKGTH-IRNLLPGLRDDENIASVLSVSGFD--------------- 605 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 FI ++ G K++ D+ + Sbjct: 606 ----------------------------------QPGSFI-FATKSGVIKKSLITDY--A 628 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 N + G+ A ++ L+ V D D ++L + G +R +R RAT+GV Sbjct: 629 NITSAGLIAINLQPG---DELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGV 685 Query: 881 VIFSTAKDERVVSVERIRESEIVDE 905 + + + VVS+ + ++ E Sbjct: 686 IGIRLREGDEVVSMALVPGNDEEGE 710 >gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51] gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51] Length = 770 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 363/760 (47%), Positives = 503/760 (66%), Gaps = 37/760 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++N+L L + ERIT I+P E + ++ AT G V++ L F Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712 + +G IA+ L D ++ V+ E++I+L +K G+ VRF S Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAI 740 +R GR + GVRG+ LA GDQV+S+ + Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV 761 Score = 82.9 bits (203), Expect = 3e-13, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 87/285 (30%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+ LSD+ R GK A K+ D I + ++ILL + G+ Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R + + A R + G V + L + +++ ++ V Sbjct: 599 YRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVTE------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 +++FI + G K+TS F +N Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTSLDQF--ANV 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP-------VNE------ 869 G+ A ++ +L+ V + +I+L S G ++R V+E Sbjct: 666 RANGLIALNLRD---EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722 Query: 870 ------------IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +R R GV A ++VVS+ + ++E+ Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKTEV 766 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A + + + R S + + + +EL +E + Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S +G+ K D+ R GKG AT + + + I L N +D I+L S +G Sbjct: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERL---LVANTHDNILLFSTRG 596 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 R+ V ++ +ASR +G V + ++ER+ ++ + E Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470] gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470] Length = 826 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 360/895 (40%), Positives = 546/895 (61%), Gaps = 95/895 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++I+ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + R T I E +++ ED I E MVV Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRCTEIQEVYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P S A GKA++N++SL E+I + + + + F TK G V+R Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F N +G A+ LD DE++S + + +L+ + LG ++F + +R GR Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREI-GR 684 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI L + D V+ ++ Sbjct: 685 TTRGVRGIRLNENDFVVGAVVISDDSNK-------------------------------- 712 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +L+VSE G GK+T + +R +R GKGI +++ + G Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750 Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892 LV+V V+D + +++++ +IRV + +I+ R T GV + TA ++VV Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIQDIKETIGRNTSGVKLIDTA--DKVV 803 Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 97/272 (35%), Gaps = 63/272 (23%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 ++ N VV + G V+R L + + NR GK++ D I + Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749 + +L T GQ R + I A R ++G V ISLA +++ MA + D Sbjct: 555 HDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD---- 607 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E+ + ++KG Sbjct: 608 --------------------------------------------FSDERSLAFFTKKGVV 623 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVN 868 KRT+ +F + G+RA + + LV+ V+ N +++ S G I+ + Sbjct: 624 KRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIASYLGIFIKFSLE 677 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++R R T+GV +++ VV I + Sbjct: 678 DVREIGRTTRGVRGIRLNENDFVVGAVVISDD 709 >gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797] gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797] Length = 919 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 343/917 (37%), Positives = 524/917 (57%), Gaps = 28/917 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + +K I + I DEM++SYLTYA++VI+ RA+PD RDGLKP RRIL M Sbjct: 1 MASDN-GEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + + + VKCA+ISG+ G YHPHG+ +IY L R+ QDW +R +LI+ QGNFGS+ Sbjct: 60 NDLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGSL 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 G PPAA RYTE RL A +LDD+ ++TVDF P YD EPVVL +++PN+LVNG Sbjct: 120 AGLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP NLGEV + +IDNPD +D +++++ GPDFPTG +I GR GI+ Sbjct: 180 GIAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIICGRYGIRKG 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGR +I +R +H E + IVVTEIPY + + EK+ LVR+ R+ I+ + Sbjct: 240 YATGRSTITLRARTHFETEKQ-SDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISRIV 298 Query: 301 DESDR----QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 D +DR + I LKR A +V+L QL++++ LQ+ FS+ ++AL G +PE ++ Sbjct: 299 DLTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALVGNRPETLSIKE 358 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +++ F+ R +V+ RRT++LL +AR R H + GL IA ++DEV++ IR SP+ A+ Sbjct: 359 LIQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEAKIS 418 Query: 417 LMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 L + I+ + D + G LS Q AI+ ++L L L R+ + Sbjct: 419 LQGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLEREKLS 478 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCI 533 E L I E L +LS + +I++++L ++ + RRT I E D+ +D I Sbjct: 479 GEHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSDKRRTDISEDELTDVNRDDLI 538 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E MVVT+S GY+KR L+ Y+AQ RGGKG G +ED + LF+ STH+ +LF + Sbjct: 539 TEEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSSTHSYLLFIT 598 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY +KV+ LP+ A+G+AL+N+LSL + E ++ + E + ++V AT+ Sbjct: 599 NRGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFD---EERFLVMATR 655 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G ++++ LS + + + G IA+KLD DE++ + D+LL T G +RF S Sbjct: 656 NGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRFAQSDA 715 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GRN+ GV+GI L+K VI M I + + + +E Sbjct: 716 RSM-GRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKRTPFGFIPPAEEQEEE 774 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 L+ + + + + +++ + G +R R GKGIR S Sbjct: 775 VLEAEEEITAEPDSDSEENTDEEQE-----TRSGM-------HYRRQRRGGKGIRDIRTS 822 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 N G V + PV ++D++++V+ G + RV EI R T+GV + + ++++VS Sbjct: 823 ARN--GNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVITLDTNDKLVS 880 Query: 894 VERIRESEIVDEAESTE 910 + RI +EIVDE+E+ + Sbjct: 881 LARIP-AEIVDESENED 896 >gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] Length = 922 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 344/908 (37%), Positives = 506/908 (55%), Gaps = 110/908 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC Sbjct: 41 RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 100 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR Sbjct: 101 SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 160 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP HN Sbjct: 161 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 220 Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 + EV G +D+P+ + L+ II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 221 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 280 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 R V + E+ R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R Sbjct: 281 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 339 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ LKR A VILN LY++T LQ F NM+AL P +L ++ +++ + EVV Sbjct: 340 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 399 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTKYL +A +R H+L G A+ ++EV+ +IR SP+ + AR LM Sbjct: 400 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------- 448 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + +VQ AIL ++L RL L R I +E L +I + D Sbjct: 449 ---------------DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 493 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R I+ E+ + D+ RRTRI+ +M ED I E++VVTV+H GY+K Sbjct: 494 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 553 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P G Sbjct: 554 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 613 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + N+L L E+I ++ + + Y+V AT+ G +++ +L+++ Sbjct: 614 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYD---EAKYLVLATRSGKIKKTRLNEYDSTR 670 Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712 + G IA++L DE++ C E++I++ ++ G V+F Sbjct: 671 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 730 Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+ + D ++SM +V Sbjct: 731 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVVP-------------------------- 763 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + ++ V+ +GF KRT+ ++R+ R+G G++ Sbjct: 764 -------------------------AESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVK 798 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ + G+LV V+++DQI+ + G +IR V EI+ R T+GV + K Sbjct: 799 AINLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 856 Query: 889 ERVVSVER 896 + ++S+ R Sbjct: 857 DEIISIAR 864 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 ++ ADY++ + + A + + + + E ++L +E + Sbjct: 484 LMRKIADYNDILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVV 543 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +TV+ G+ KRT + ++R +R GKGI+ T + + + + F + ++ ++ +++G Sbjct: 544 VTVTHSGYIKRTKADEYRAQHRGGKGIKGTRLREDDVVDH---FFLTSTHNWLLFFTNEG 600 Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902 + R+ E+ SR +KG + + DE++ V I + + Sbjct: 601 RVYRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHDYDE 645 >gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20] Length = 893 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 348/929 (37%), Positives = 512/929 (55%), Gaps = 102/929 (10%) Query: 1 MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + ++ + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH Sbjct: 1 MSDEVEEIIGDEGATNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G + K +RI G+VMG YHPHG++AIYDALAR+ Q WSLR L+ G Sbjct: 61 RRVLYAMYDGGYRPTASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFG+ PAA RYTEC++ A +L D+ +D+VDF+ NYDG QEPV+L +R+PN Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMAT IP HNL EV G +++PD + L++ I GPDFPTGA Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P +L G ++ +VA + +V+VRR+++ L KA +R H+L GL A+ LD V+ +IR SP Sbjct: 360 PRTLSLDGFVRHWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E Q AIL L+L RL L Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I+ E L +K+ +I++S R GI+ EL + ++ RRTRIV +M Sbjct: 454 ERLKIQEESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP G ++G+ + N+L+ GE I +M + + Y+ Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADYL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ G IA+ L DE++S + D+LL ++ G Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAG 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ + D +++M +V + D D Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V+E G+ KRT+ D+ + Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G++ ++ + G LV + D+++ + G ++R V E+ R T+GV Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 +R+++V R E ++ + ++ + Sbjct: 818 FAKPDAGDRIIAVARSTERDMEEAVDAAD 846 Score = 65.2 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 96/271 (35%), Gaps = 14/271 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 D +V + G VK+ LS Y + R GG + +E +L T +L S Sbjct: 628 DYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVS 687 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + + + + ++ + SW + + T+ Sbjct: 688 RAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709 G +R + D+ + G + +K+ + E ++ +++L G+ VR Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GR + GV GD++I++A D + SA + Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIAVARSTERDMEEAVDAAD-SAPSADSADSTDQA 860 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + + D+ S L+ E + Sbjct: 861 QALQAPEGDTGDSPADSVADTVALEDNESEV 891 >gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] Length = 852 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 360/904 (39%), Positives = 536/904 (59%), Gaps = 113/904 (12%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MENLFNKDSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD Sbjct: 61 GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E+VDG + ++DN + L+ +M+ I+GPDFPT +I G+ GI +AY TGR Sbjct: 181 MATNIPPHSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIYGKKGIIDAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I IR +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I IA++RDESDR Sbjct: 241 GRIKIRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ R Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 360 KTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I++EL +K + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLDEILKSEALLEDLIREELKEIKAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTSDFA---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCT---------------------------QENDILL 698 I G A+ LD DE+++ + Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFA 690 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKH 757 TK G C++FP++ +R GR S GV I + D+++ ++ + Sbjct: 691 VTKRGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEN-------------- 735 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 EQ +L+VS KG GKRT++ ++ Sbjct: 736 --------------------------------------DEQEVLSVSVKGIGKRTNAGEY 757 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ +R GKG+ ++ ++ L++V V+++ ++ ++ G +IRV ++ IR A R T Sbjct: 758 RLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNT 815 Query: 878 KGVV 881 GV+ Sbjct: 816 SGVI 819 >gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii ATCC 33806] gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii ATCC 33806] Length = 838 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 344/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ Sbjct: 2 SDYDRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS D PAA RY Sbjct: 62 YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TECRL A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG GIAVGMATNI Sbjct: 122 TECRLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL E+ D +++NPD D L+A ME I+GPDFPT +I+G GIK+AY TGRG Sbjct: 182 PPHNLRELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGTQGIKDAYTTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305 SI +RGV+ IE+ R+ IV+TE+PYQVN ++ IAE VR+ ++ I+ + DE SDR Sbjct: 242 SIRMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +VA + Sbjct: 301 VGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR S + ARR L+ Sbjct: 361 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLI------- 413 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + + EVQ AIL ++L RL L R I +EL + I Sbjct: 414 -------------------DLLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+S R I++ EL + D+ RR++I+ D+ +ED I RE++VVT++ Sbjct: 455 DLKDILASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITST 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + Sbjct: 515 GYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ + N+L ERI ++ E + Y+V AT G V++++LSD+ Sbjct: 575 LPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATVQGRVKKSRLSDY 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723 G IA+ L+ D+++ C+ E+D+LL ++ GQ +RF +R GR++ G Sbjct: 632 ESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPM-GRSTAG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V Sbjct: 691 VKGMRFRGDDHLLAMTVVRDG--------------------------------------- 711 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L + G+GKRTS ++ + R G G+ + + G L+ Sbjct: 712 --------------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V+++DQI ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 756 ALAVDNDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 808 Score = 86.4 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 97/231 (41%), Gaps = 23/231 (9%) Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVI 736 DE++++ ++ D+ + G I ++ + + + L + ++I Sbjct: 393 DEVIALIRRSETVDV---ARRGLIDLLTIDEVQ------ADAILAMQLRRLAALERQKII 443 Query: 737 S-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +A + AD + + A R + + S + + ++L Sbjct: 444 DELAEIEAIIADLKDILASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIA 503 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854 +E ++T++ G+ KRT ++ R GKG+R ++ + +V F V + +D I+ Sbjct: 504 RENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWIL 559 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902 ++ G + R+ E+ ASR +G + + + +ER+ V +I+ E Sbjct: 560 FFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 610 >gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126] gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126] Length = 839 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 355/888 (39%), Positives = 526/888 (59%), Gaps = 78/888 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G+ N+ Sbjct: 3 EGENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR +++GQGNFGS+DGD PAA R Sbjct: 63 PYKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A +L D+ K+TVDF+ N+D S +EP VL A+ PN+L+NG GIAVGMATN Sbjct: 123 YTEARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EVV+G A IDN DI + LME I PDFPTGA I G G+K A+ TGRG IV Sbjct: 183 MAPHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIYGYQGVKAAFETGRGRIV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE RE+++VTEIPY VNKA M+EK A LV EK+I I+D+RDESDR G R Sbjct: 243 MRAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V E+++ A +V+LN LY+YT LQ+ FSVN VAL +PE L ++K +V R +V+ Sbjct: 303 IVYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGRPETLNLKDMIKHYVEHRHDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L +A+ RAH+L G IA+ NLDEV+++IR S +PE AR LM + Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +AIL++RL RLTGL R+ I E + I+ Sbjct: 414 -----------------FKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLES 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ + IIK E+ ++D RRT I+ + DED I ED+V+T+SH GY+K Sbjct: 457 VLADEGLRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R L+ Y+ Q RGG G G +D+DF LF+ TH +L F+ LG VY KV+RLP G Sbjct: 517 RTLLNEYKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEG 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+A+ N++++ + + ++ Sbjct: 577 SKTSKGRAIQNLINIESEDSVRAVINVE-------------------------------- 604 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 LD D I N +++ T+ G + + + ++ + G+ IS+ Sbjct: 605 -------NLDDADYI-------NNNFLVMCTEKGTIKK---TTLEAYSRPRANGINAISI 647 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+++++ + + D + + + + ++ + +G Sbjct: 648 NEGDRLLNVK-LTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDGKDIVVE 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + + +L VSEKG+GKR+ D+RI+ R GKG++ +V++ + G LVA+ V D Sbjct: 707 MVAITRENANLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE--KTGELVAIKEVID 764 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +D +++++ G IR+ V +R+ RAT+GV + +++ + SVE++ Sbjct: 765 SDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSVEKV 812 >gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522] Length = 843 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 346/833 (41%), Positives = 511/833 (61%), Gaps = 33/833 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + L+ D+ KDT+D++ NYDGS EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ +NP I LME I GPDFPTGA I+G +GI+ AY TG+GSI Sbjct: 183 IPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + + +I+VTEIPYQVNKA ++EKIAELVR+K++ I DLRDESDR G R Sbjct: 243 IRAKAEIED-NNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +A+V+LN LY+ T+LQS F +NM+AL +P+ ++ +L ++ + V+ Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ +IR S E AR+ LM+ Sbjct: 362 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLME---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L +IKE Sbjct: 412 ----------------NFSLSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++EL ++D + RRT I G MEDED I R+++V+T+SH GY+K Sbjct: 456 ILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQNVVITLSHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PLS YR+Q+RGG+G G+ D+DFV LFI ++H +LFF++ G VY+ K + +P Sbjct: 516 RIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSF 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + A+G +IN+L + + E ++T++P E + Y+ F TK G +R L F I Sbjct: 576 NRTAKGIPIINLLQIEKDEYVSTVIPVDEFD---EERYLFFMTKDGIAKRTALKVFSNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G A+ L D + V +I+ T+ G +RF + +R+ GR + GV+G++L Sbjct: 633 RGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLM-GRTATGVKGVTL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + DQV+ M + A + ++ Sbjct: 692 QENDQVVGMDTIEEDQAVLIVTEKGFGKRTPV--SEYRIQTRGGKGIKTCNITDKNGPLI 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ++ + ++ ++ G R + + R+ +G+R V + + Sbjct: 750 SLKVVSDDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVA 802 >gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505] gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505] Length = 893 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 349/929 (37%), Positives = 512/929 (55%), Gaps = 102/929 (10%) Query: 1 MTEHIISSDEEE-------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + +E + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH Sbjct: 1 MSDEVEEIIGDEGATNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G + K +RI G+VMG YHPHG++AIYDALAR+ Q WSLR L+ G Sbjct: 61 RRVLYAMYDGGYRPTASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFG+ PAA RYTEC++ A +L D+ +D+VDF+ NYDG QEPV+L +R+PN Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMAT IP HNL EV G +++PD + L++ I GPDFPTGA Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P +L G ++ +VA + +V+VRR+++ L KA +R H+L GL A+ LD V+ +IR SP Sbjct: 360 PRTLSLDGFVRHWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E Q AIL L+L RL L Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I+ E L +K+ +I++S R GI+ EL + ++ RRTRIV +M Sbjct: 454 ERLKIQEESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP G ++G+ + N+L+ GE I +M + + Y+ Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADYL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ G IA+ L DE++S + D+LL ++ G Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAG 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ + D +++M +V + D D Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V+E G+ KRT+ D+ + Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G++ ++ + G LV + D+++ + G ++R V E+ R T+GV Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 +R+++V R E ++ + ++ + Sbjct: 818 FAKPDAGDRIIAVARNTERDMEEAVDAAD 846 Score = 65.6 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 16/272 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 D +V + G VK+ LS Y + R GG + +E +L T +L S Sbjct: 628 DYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVS 687 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + + + + ++ + SW + + T+ Sbjct: 688 RAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709 G +R + D+ + G + +K+ + E ++ +++L G+ VR Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD- 768 + + GR + GV GD++I+ + + + D +E + + S D Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIA--VARNTERDMEEAVDAADSAPSADSADSTDQ 859 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + + D+ S L+ E + Sbjct: 860 AQALQAPEGDTGDSPADSAADTVALEDNESEV 891 >gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 848 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 340/837 (40%), Positives = 508/837 (60%), Gaps = 26/837 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE + RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ E + YV Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +G + D I I + + + + R Sbjct: 718 --NEYWEKSG---------NEEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + + ++ + + E + +LT + G+GKRT D+ ++ K Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKTKADK 823 Score = 75.2 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 61/236 (25%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 +++ VV T G ++ +D+ R GK A D I ++ Sbjct: 539 IADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTH 598 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + ++ T LG+C + + GRNS G I L +G++V ++ V Sbjct: 599 DYLMCFTNLGKCHWIKVYKL-PEGGRNSRGRPINNVIQLEEGEKVSAILAVRE------- 650 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 ++Q++ + +G K Sbjct: 651 -------------------------------------------FPEDQYVFFATAQGMVK 667 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 + F N +GI+A + + LV + +D I+L S+ G IR Sbjct: 668 KVQLSAF--KNVRSQGIKAIALKEG---DYLVGAAQTSGSDDIMLFSNLGKAIRFN 718 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 11/191 (5%) Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 + RN G L + + V ++ DY + + + ++ R +T+ Sbjct: 472 MSLRNLTG-----LDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGD 526 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + S + + ++L + + ++T++ G+ K + D++ R G+G +A Sbjct: 527 ERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDE 586 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVV 892 + I L F N +D ++ ++ G + V ++ R ++G + + E+V Sbjct: 587 DFIETL---FVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVS 643 Query: 893 SVERIRESEIV 903 ++ +RE Sbjct: 644 AILAVREFPED 654 >gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] Length = 829 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 361/893 (40%), Positives = 533/893 (59%), Gaps = 92/893 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 I +++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + K+ Sbjct: 6 NNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAKF 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP Sbjct: 126 EARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN E++ G A++ NPDI L LME I+ PDFPTG +I G+ GI +AY TGRG I +R Sbjct: 186 PHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +E IV+ E+PYQVNKA ++E IA LV++K I ++++RDESDR G RVV Sbjct: 246 AKTHIEQ-KSKKEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ TS+Q+ F + M+++ +P F +I ILK F+ R+ +++R Sbjct: 305 IELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGIITILKHFINHRKTIIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL A++ +++V+R+IR S N E A+ L+ Sbjct: 365 RTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSE----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S++Q +I+ +RL RLTGL + I NEL L I+ IL Sbjct: 414 ---------------FDFSDIQAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 S L II +E V D + RRT I + D++ ED I E MVVT++H GY+KR Sbjct: 459 RSEEVLHSIIAEEFDEVLDTYGSNERRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPL++Y Q+RGGKG++ V ++DF+ F +TH ++LF + G ++ KV+++P GS Sbjct: 519 VPLTLYEKQKRGGKGKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGS 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+L+L ERI +I+P + + +VF T+ G V+R LS+F I Sbjct: 579 RIAKGKAVVNLLNLMADERIRSIIPTTDFS---EDKGLVFFTQKGVVKRTNLSEFSNIRS 635 Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD D +++ + Q + + TKL QC++F I R GR++ GVRGI Sbjct: 636 NGVRAIVLDEDDALITAKIADQSIKYLFIMTKLAQCIKFDIEKTRE-QGRSTRGVRGIKF 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+VI I+ + Sbjct: 695 KHPEDEVIDANIIAN--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPV 847 EQ IL V+EKG GKRT + ++R++NR G G+ A ++ ++ G +V V Sbjct: 710 -------DEQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMT--SKTGKYVVGCLMV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ ++ ++ G +IRV + I +SR T GV I + V +V R + Sbjct: 761 DESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDDVANVSRCPKQ 810 >gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13] Length = 830 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 358/844 (42%), Positives = 524/844 (62%), Gaps = 38/844 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 2 SERSSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKA 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +LI+G GNFGSVDGD AA RY Sbjct: 62 YKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K + +L D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNI Sbjct: 122 TEARMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H LGE++DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TGRGSI + Sbjct: 182 PPHQLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R IE RE I+V E+PYQVNKA ++EKIA+LVR+K+I I+DLRDESDR G R+ Sbjct: 242 RAKVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+K+ A+A+V+LN LY+ TSLQ+ F +N++AL +P+ L L ++ ++ V+ Sbjct: 302 VMEVKKDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIK 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA RAH+L GL IA+ +LD V+ +IR S + AR LM Sbjct: 362 RRTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AIL++RL RLTGL R+ I E L I E I Sbjct: 412 ----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYQGLMQLIAELKAI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ ++L II++EL VK+ + RRT I+ G ++EDED I R+++V+T++H GY+K Sbjct: 456 LADEEKVLEIIREELTEVKERFNDTRRTEIMVGGFENIEDEDLIPRQNVVITLTHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PLS YR+QRRGG+G G+ + DFV L STH ++LFF++ G VY+ K + +P Sbjct: 516 RLPLSTYRSQRRGGRGIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEF 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+G +IN+L + +GE + I+P + ++ Y+ F TKHG +R+ LS F I Sbjct: 576 SRTAKGIPIINLLEVEKGEWVNAIIPVEDFV---DDWYLFFTTKHGISKRSPLSQFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L DE++SV+ ++++ TK G +RF + +R GR + GV+GIS+ Sbjct: 633 KGGLIALGLRESDELISVKLTDGTKEMIIGTKKGMLIRFHETDVRSM-GRTATGVKGISI 691 Query: 730 AKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 ++ D+V+ M ++ D + Y K A+ + + N + G + Sbjct: 692 SENDEVVGMELLDEGLDVLVVTKNGYGKRTPAEEYRVQSRGGKGIKTCNITDRNGELVSV 751 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + E+ ++ ++ G R S R+ +G++ +++ + V V+ Sbjct: 752 KTVTT---EEDLMLITASGVLIRMSVDGISQMGRNTQGVKLIRLAENEF---VTTVARVD 805 Query: 849 DNDQ 852 ++ Sbjct: 806 KEEE 809 >gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] Length = 807 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 365/843 (43%), Positives = 526/843 (62%), Gaps = 38/843 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 2 NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R Sbjct: 62 PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG I+ Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + +IV+TEIPY V KA ++EKIAELV K+I IADLRDESDR G + Sbjct: 242 VRAKAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L GL IA+ +DEV+ IIR S A+ LM+R Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AI+++RL RLTGL R + +EL L +IKE + Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L IIK+ELL +K++ +PR+T IV +++ ED + ED+VVT++H GY+K Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PL Y++Q+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G A++N++ ++QGE++T ++P + S + YV+ TK G +++ + +F I Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPLKK---SDDIKYVLMCTKKGIIKKTSIEEFKSIK 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ LD DE+++V+ E ++++ T G +RF +R GR + GV ISL Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPM-GRVARGVMAISL 690 Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+V+ M +V + + K + I G + S G + Sbjct: 691 REDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSI 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 RC E + +S G R D +R +G+ + + +V+ + Sbjct: 751 RCV---QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKL---EDGDRVVSTARIE 804 Query: 849 DND 851 + Sbjct: 805 SEE 807 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 9/214 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749 E+ ++ T G R P+ + R G+ GIS + D V + I D + Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKSQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + Y S ++ + +++L ++KG Sbjct: 560 KGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGII 619 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+TS +F+ R+ GI A + + L+ V N ++I+ + KG IR + Sbjct: 620 KKTSIEEFKSIKRN--GIIAITLDE---NDELINVKLTNGEREVIIGTAKGYAIRFNEKD 674 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +R R +GV+ S +D+ VV ++ + V Sbjct: 675 VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEV 708 >gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] Length = 812 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 349/843 (41%), Positives = 525/843 (62%), Gaps = 33/843 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + I+ EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M++ G+ +K Sbjct: 2 ENKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++++Y A+ +MAQD++ R LL++GQGNFG+VDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + A LL D+ K+TVDF PN+D S QEP+VL A+YPN+LVNG GIAVGMAT+I Sbjct: 122 TEARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D V IDN D + LME I GPDFPTGA+I+G GIK AY TGRG + + Sbjct: 182 PPHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QIV+TEIP+QVNK+ ++E+IA+LVR+K++ I+DLRDE++R G RV Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR +A++ILN LY+++ L+ FS+ +A+ P+ L L+ +V +++V+ Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA+ RAH+L GL IA+ N+D V+ IIR S N + A+ +L++ Sbjct: 362 RRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q +AIL++RL RLTGL RD I NE L I I Sbjct: 412 ----------------FALSDIQAQAILDMRLQRLTGLERDKIDNEYKELMERITYLESI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L G+IK E+L++KD+ PRRT I ++ +D E++ +T++HLGY+KR Sbjct: 456 LADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFVTDL +TH+ +LFF++ G VYK + +P G Sbjct: 516 LPADTYKSQKRGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQIN 669 ++G A++N+L LN GE+I + F D + Y++FATK G V++ +SDF IN Sbjct: 576 RTSKGTAIVNLLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNIN 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SG IA+ L DE++ V E DI+L T+ G +RF + +R GR + GV+GI+L Sbjct: 636 KSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSM-GRTATGVKGITL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +KGD V+SM ++ + + ++ + Sbjct: 695 SKGDHVVSMDLISNGTDLLVVSEKGFGKRTETEEYRPQI--RAGKGIKTYNINSKTGKLV 752 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 L ++ ++ ++ G R + I R G++ + +V++ + Sbjct: 753 GATLVDEDDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDE---EVEVVSIAKLKG 809 Query: 850 NDQ 852 ++ Sbjct: 810 EEE 812 Score = 60.2 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 55/499 (11%), Positives = 159/499 (31%), Gaps = 91/499 (18%) Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529 D + +++ ++ ++ +S G + +K+ T R V E Sbjct: 190 IDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGR--GKVRVRARAEI 247 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 E+ + +V V + L A K G+ ++ + H Sbjct: 248 EELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDE-------TNRHGIR 300 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + V L ++ + +I++L ++ ++ + + + Sbjct: 301 VVIELKRDVN--ANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKD 358 Query: 650 FATKHGNV--RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 T+ ++ + I + LD+ D ++S+ ++ I K Sbjct: 359 VITRRTQFELKKAQARAHILEGLK----IALDNIDRVISIIRGSENGQI---AKEKLIEE 411 Query: 708 FPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQ 761 F +S I+ + + + L + D++ + ++ + + + Sbjct: 412 FALSDIQ------AQAILDMRLQRLTGLERDKIDNEYKELMERITYLESILADENKLFGV 465 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + ++ + + ++ E ++L +E+ +T++ G+ KR + ++ Sbjct: 466 IKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQK 525 Query: 822 RSGKGIRATDVSKIN--------------------------------------EIGALVA 843 R G+GI A + + + A+V Sbjct: 526 RGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVN 585 Query: 844 VFPVNDNDQI-------------------ILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 + +N ++I + + G + + P+++ + +++ G++ + Sbjct: 586 LLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNINKS--GLIAIN 643 Query: 885 TAKDERVVSVERIRESEIV 903 + ++ V R E + Sbjct: 644 LKDGDELIGVNRTNGEEDI 662 >gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F] Length = 846 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 337/882 (38%), Positives = 516/882 (58%), Gaps = 88/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G G+ ++K Y K A Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD AA RYTE RL Sbjct: 78 QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L ++ KDTVDF NYD S QEPVVL + +PN+L NG GIAVGMATNIP HNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G ++ N + ++ L E I+GPDFPT A ILG TGI + TGRGS+ +R S Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + ++ IV+T+IPY VNKA ++ KIAELV+ ++I IADLRDES+R+G R+VIE K Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQLY+ T LQ+ FSV M+AL +P+ L L+ ++ + ++++R+T + Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ AH++ GL IA N+D+V+ II+ + + E A+ LM + Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTK--------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL L+GL R++++ EL L IK+ +IL ++ Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II +L + + RRT+I G +++E I E +V+T S GY+KR+P+S Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G G+ ++D V L + STH+ +LFF++ G VY+ + ++P+GS ++ Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN++S+ + E++ +++ + ++ Y F+TK G V+R K S+F +I +GKI Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDY----DSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733 A+KL D + V + +I + G VRF +R GR + GV G+ D Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI ++ Sbjct: 707 EVIGLS-----------------------------------------------------S 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +L V EKG GK T ++R++NR KG+ V+ + G ++ VN N+++ Sbjct: 714 SHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +++S G ++RVP+ E+ R T GV + S + E + SV Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA 813 >gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645] gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645] Length = 922 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 352/897 (39%), Positives = 526/897 (58%), Gaps = 20/897 (2%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + VKCA+IS Sbjct: 1 MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ G YHPHG + IY L RMAQ+W+ R LL++ QGNFGS+ G PPAA RYTE R+ Sbjct: 61 GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL+DL DTVD+ P YD EP VL ++YPN+LVNG GIAVGMAT+IP HNLGEV Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V VI+ P + ++ L++II GPDFPTG +I GR+G++ Y TGR +I++R + I+ Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIICGRSGVRRGYLTGRSTILVRSHTTIDN 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRG 317 R +IV+ +IPYQ + + E+IA E RIV I+ +R+ESD ++ R+V+ELKR Sbjct: 241 VK-GRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKRD 299 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A D++LNQL+++T +Q FS+ M+AL KP T+ ++ F+ R V+ RRT++LL Sbjct: 300 ADPDIVLNQLFQFTPIQDTFSIIMLALVDGKPRTLTIRDLIDEFIRHRVIVIRRRTQFLL 359 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI--DLID 435 ++AR R H + GL +A+A++DE++RIIR S A+ LM AS + + + + Sbjct: 360 SRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEEGFE 419 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G L+ VQ AIL + L +L L ++ + E L EI+E L ILS Sbjct: 420 LFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILSDER 479 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + II+ ++L ++ + RRT I E L ++ ED I E MVV++SH GY+KR P + Sbjct: 480 NIREIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKRTPAT 539 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+AQRRGGKG G D D + LF+ STH +LFF++ G VY +KV+ LP S ++R Sbjct: 540 TYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSRESR 599 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+A++N+L L +GERI + + + Y+V AT+ G V++ KL + + + G I Sbjct: 600 GRAIVNLLQLEEGERIADCRAVRDFD--VEDHYLVMATRKGLVKKTKLEAYSRPMKKGII 657 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+KL DE++ V ++++L+T G +RF S R GRNS GV+GI L D+ Sbjct: 658 AIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPM-GRNSSGVKGIKLDADDE 716 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ M + + + S ++ + + EE E + Sbjct: 717 LVGMVVADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEEEPVVEDE 776 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + +S +R R GKG+R + N G +V++ V+D D+++ Sbjct: 777 ASGDDD---------ELSSGAKYRTQRRGGKGLRDIKTTARN--GRVVSIVRVDDEDEVL 825 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAESTE 910 +++ +G + RV EI I R T+GV I S KD+ + +V R+ + + + DE ES+E Sbjct: 826 MMTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSE 882 Score = 65.2 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 84/255 (32%), Gaps = 13/255 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D +V + G R S R R G G+ + +D + + + +L G Sbjct: 677 DELVLSTSKGMAIRFCESDARPMGRNSSGVKGIKLDADDELVGMVVADPDAQLLTVCEHG 736 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + P + + + P EDE+S ++ + G Sbjct: 737 HGKRTYFG--PNQTRADNAPPSDESANEDDSAAEEE--PVVEDEASGDDDEL----SSGA 788 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 R + + A ++S+ E+++L+ T G+ R + I Sbjct: 789 KYRTQRRGGKGLRDIKTTA----RNGRVVSIVRVDDEDEVLMMTARGKIQRVSAAEI-SI 843 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVR +SL K D + ++ V D+ DE + + + E Sbjct: 844 VGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSEEPSTPPADGGAPVVEPAPPEV 903 Query: 777 NDSSVEGNISEERCQ 791 D E+ + Sbjct: 904 TDVDSNSTAEEDSPE 918 >gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421] gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421] Length = 838 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 339/906 (37%), Positives = 514/906 (56%), Gaps = 91/906 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E E + + I E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEITTP----EGGILIPIPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ ++ KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ Sbjct: 57 EEKGLRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 GDP AA RYTE ++ K A +++D+ K+TVDF N+D S +EP VL A++P +L NG Sbjct: 117 GGDPAAAYRYTEAKMAKIAESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P HNL E+ A IDNP+I +D L + I+GPDFPTG I G+ GI+ A Sbjct: 177 GIAVGMATNMPPHNLREIASAISAYIDNPEITIDELCKHIKGPDFPTGGTIFGKKGIRQA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I++RG IE +E I+ TE+PYQVN ++ +I EL R K I IA++ Sbjct: 237 YKTGRGKILVRGRFTIEVDKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVN 296 Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE SDR G R+VIELKRGA V+LNQL+ T+LQS F V +AL +P+ TL +++ Sbjct: 297 DETSDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVEGRPQTLTLKDLVR 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV R EVV RRT++ L KA +RAH+L L +A+ N+DEV+ IIR S + TA+ LM+ Sbjct: 357 CFVNHRIEVVTRRTRFDLRKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMK 416 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R EVQ++AI++++L RLT L D+R EL Sbjct: 417 R--------------------------FGFDEVQSQAIVDMQLKRLTNLEIKDLRKELEE 450 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDM 538 L I I D+L ++ ++K E + D+ RRT IV + + ++ ED I +E+M Sbjct: 451 LEILIAHLKDLLEHPEKIRALVKDETNEIADKFGDERRTDIVADEVEELNIEDLIQKEEM 510 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ +S+LGY+KR+P+S Y++Q RGGKG + + ++DF+ +F STH ++F ++ G Sbjct: 511 VILISNLGYIKRIPVSAYKSQNRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKA 570 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV +P S +RG + ++LS++ E IT ++ E ++ Y++ AT G V+ Sbjct: 571 YWLKVHEIPEASRTSRGSHIKSLLSVSGDEEITAVVSLKEFS---DSTYLLMATAAGVVK 627 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +F G IA+KLD D+++S T +++I+L T+ Q +R IR G Sbjct: 628 KVTTDNFQNAKTRGIIAIKLDDGDKLVSAILTTGKDEIMLITRHAQALRMTEEEIRPL-G 686 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GV GI LA+GD++ V Sbjct: 687 RASRGVAGIKLAQGDELTGALRVAD----------------------------------- 711 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 Q +L ++E G+GKR +F R+ G R +S+ + Sbjct: 712 ------------------NQKMLIMTENGYGKRVEFSEFTPHGRATGGQRIYTLSE--KT 751 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +V + V D+D+++ ++ +G IRV V+ I I R+ +GV + + ++ ++ + Sbjct: 752 GEVVGLLTVLDDDEVVCITGQGKTIRVNVDSISIMGRSAQGVRVLDIESPDILIGLDVVA 811 Query: 899 ESEIVD 904 + Sbjct: 812 RETNEE 817 >gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] Length = 807 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 365/843 (43%), Positives = 526/843 (62%), Gaps = 38/843 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 2 NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R Sbjct: 62 PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG I+ Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + +IV+TEIPY V KA ++EKIAELV K+I IADLRDESDR G + Sbjct: 242 VRAKAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L GL IA+ +DEV+ IIR S A+ LM+R Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AI+++RL RLTGL R + +EL L +IKE + Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L IIK+ELL +K++ +PR+T IV +++ ED + ED+VVT++H GY+K Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PL Y++Q+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G A++N++ ++QGE++T ++P + S + YV+ TK G +++ + +F I Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPLKK---SDDIKYVLMCTKKGIIKKTSIEEFKSIK 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ LD DE+++V+ E ++++ T G +RF +R GR + GV ISL Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPM-GRVARGVMAISL 690 Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+V+ M +V + + K + I G + S G + Sbjct: 691 REDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSI 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 RC E + +S G R D +R +G+ + + +V+ + Sbjct: 751 RCV---QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKL---EDGDRVVSTARIE 804 Query: 849 DND 851 + Sbjct: 805 SEE 807 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 9/214 (4%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749 E+ ++ T G R P+ + R G+ GIS + D V + I D + Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKSQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + Y S ++ + +++L ++KG Sbjct: 560 KGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGII 619 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+TS +F+ R+ GI A + + L+ V N ++I+ + KG +IR + Sbjct: 620 KKTSIEEFKSIKRN--GIIAITLDE---NDELINVKLTNGEREVIIGTAKGYVIRFNEKD 674 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +R R +GV+ S +D+ VV ++ + V Sbjct: 675 VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEV 708 >gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] Length = 836 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K Sbjct: 3 NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RY Sbjct: 63 HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNI Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + + Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242 Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H+E+ S + E I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G R Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AILELRL +LTGL D ++ E + L +I Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ + II++EL + TPRRTRI D + ED I E +++T+S YV Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 577 EGERKAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633 Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVR Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692 Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+SL + D V+S +V Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRN--GDVLGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ + Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817 Query: 905 EAEST 909 E E Sbjct: 818 ETEEN 822 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + + + G VK+V L + + R+ G + ++ + I + V+ F Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + LG + ++ ARG +++ + + + V+ Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719 Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 +G +R+ + DF + NR I + + D +L + T + ILL + GQ +R Sbjct: 720 DNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + +RV GR + GVR ++L +GD +++M + + + + + I Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835 >gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 826 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 349/832 (41%), Positives = 514/832 (61%), Gaps = 33/832 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 11 EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 70 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD AA R Sbjct: 71 PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 130 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ K+T+D+ PNYDG QEPVVL AR+PN++VNG GIAVGMATN Sbjct: 131 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 190 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +I+NPD+ LM I+GPDFPTGA ILGR GI+ AY+TGRGS+ Sbjct: 191 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 250 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 251 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 309 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN L+++T+LQS F + +AL +P+ L +L ++ + V+ Sbjct: 310 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 369 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM++ Sbjct: 370 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 420 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L +I E Sbjct: 421 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 463 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II +EL ++ RRT I G +EDED I RE++V+T++H GYVK Sbjct: 464 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 523 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGG+G G+ ++ DFV LF+ ++H ++FF+ G VY+ K + +P Sbjct: 524 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 583 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++P E + ++ FAT+ G V++ L D+ I Sbjct: 584 GRTARGTPIINLIQIEQGETVNAVIPIESFE---SGHFLFFATQQGIVKKTPLKDYNNIR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ +I++ T+ G + FP +R GR + GV+GI + Sbjct: 641 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGIHI 699 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D VI M IV + + + + + Sbjct: 700 SEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVV 757 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ +++ ++ ++ G RTS I R+ +G+R + + +E+ + Sbjct: 758 GLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATV 809 >gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] Length = 827 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 361/900 (40%), Positives = 532/900 (59%), Gaps = 91/900 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 I +++I + +Q+SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + K+ Sbjct: 7 NDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSHGAKFK 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+G+YHPHG+ A+YDAL RMAQ +S+R+ L++GQGNFGSVDGD AA RYTE Sbjct: 67 KSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAAMRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP Sbjct: 127 ARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN E++ G A++ NP+I+L LME I+ PDFPTG I G+ GI +AYATGRG I +R Sbjct: 187 HNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIFGKKGIMDAYATGRGRIKVRA 246 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIEK G+++ I++ E+PYQVNKA ++E IA LV++K I ++++RDESDR+G RVVI Sbjct: 247 KTHIEK-KGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDREGIRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A ++++LN L++ TS+Q F + M+++ +P F +I ILK F+ R+ +++RR Sbjct: 306 ELKKDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQEPRIFGIIDILKHFINHRKTIIIRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+ RAH+L GL A+ +DE++R+I+ S N E AR L+ Sbjct: 366 TIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSE------------ 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 S +Q ++I+++RL RLTGL R+ I NEL L I IL Sbjct: 414 --------------FDFSVIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILK 459 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S L GII QE + RRT + + D++ ED I E MVVT++H GY+KRVP Sbjct: 460 SEEVLHGIIDQEFDELLTIYTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRVP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L+ Y Q+RGGKG+ V ++DF+ F +TH ++LF + G ++ KV+++P GS Sbjct: 520 LAQYEKQKRGGKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+GKA++N+L+L E+I +I P + +VF TK G V+R LS+F I +G Sbjct: 580 AKGKAVVNLLNLVADEQIQSINPTTDFS---EEKSLVFFTKKGVVKRTNLSEFSNIRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD D I++ + + + + TK+ QC++F + R GRN+ GVRGI Sbjct: 637 VKAILLDDDDSIITAKIADKSIKYLFIMTKMSQCIKFDMEKTRD-QGRNTRGVRGIKFKH 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ I+ + + Sbjct: 696 AEDEVVDANIIANDE--------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849 Q IL VSEKG GKRT + ++R++NR G G+ A ++ + G +V V++ Sbjct: 711 -------QEILVVSEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYVVGCLMVDE 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++ ++ G +IRV + I +SR T GV I + V SV R + I D+ E Sbjct: 762 EMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDDVASVSRCPKQPIEDDEEDD 818 >gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K] gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K] Length = 920 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 345/901 (38%), Positives = 534/901 (59%), Gaps = 87/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EEE + ++++ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +N Sbjct: 70 EEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNA 129 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +Y K AR+ G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGS+DGD AA R Sbjct: 130 QYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMR 189 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +++ L KDTVDF PNYDGS +EP VL +R PN+L++G GIAVGMAT Sbjct: 190 YTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATT 249 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D VA+ N +I ++ LM+ I+GPDFPTGA ILG +GI AY TGRG+IV Sbjct: 250 IPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGTSGIITAYETGRGAIV 309 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R SHIE + +I++TEIPY+V K A++EKIA L +EKRI I+++RDE+ R+G R Sbjct: 310 LRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIR 369 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+LK+ +VILN++ + T+LQ ++ NM+AL +P+ L L ++ + +VV Sbjct: 370 VVIDLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGEPKLLNLKQALDVYLKHQIDVV 429 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L +A+DRAH+L GL IAV+N+DEV+R+IR S N A+ +LM Sbjct: 430 TRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMA---------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSE+Q +AI+++RL RLT L + ++ELN+L EI + Sbjct: 480 ----------------SFKLSEIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYEN 523 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S +L+ +I EL +K RRT I ++DED I +++ +T+S GYV Sbjct: 524 ILNSHEKLIDLIVSELEEIKARFGDERRTIINTSDYGIIKDEDLIPNKNIAITLSKNGYV 583 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL+ +R+Q+RGG G +D V + THT +L F+S VYK + ++P Sbjct: 584 KRTPLTDFRSQKRGGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPE 643 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN +++++ E++ +++ E + Y++ TK+G ++ + + +I Sbjct: 644 LSRQAKGVPFINFINIDKKEKVVSLLSVEEY---FEGTYLLTITKNGIAKKTSIEAYKRI 700 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +GK A+ L DE+ V T E+ +++ G+ V F IR GR + GV + Sbjct: 701 QSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPM-GRTASGVIAMK 759 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L K ++V+ + Sbjct: 760 LDKKERVVGV-------------------------------------------------- 769 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +++L++ +KGFGK+T +R+S+R+ KG+ + +V + G L V V Sbjct: 770 ---GKSSEGKYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVK---KAGKLNYVGIVK 823 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I ++++G IR +N++ SR TKGV + + + + S+ I +I +E E Sbjct: 824 GYEEAIFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEK 883 Query: 909 T 909 + Sbjct: 884 S 884 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 58/436 (13%), Positives = 146/436 (33%), Gaps = 37/436 (8%) Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 + +T+ LN + + + ++++ +I AR +R+ + Sbjct: 504 IEKTQDELNALKQEIAGYENILNSH---EKLIDLIVSELEEIKARFGDERRTIINTSDYG 560 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +I D + + LS+ + L R + + + Sbjct: 561 IIK---DEDLIPNKNIAITLSKN--GYVKRTPLTDFRSQKRGGVGVYTHKTYADDDVDSI 615 Query: 490 ILSSRSRLLGIIKQELLSVKDE-LDTPRRTRIVEGLLDMEDEDCIVREDMV--------- 539 + + + + K P +R +G+ + + +E +V Sbjct: 616 LTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINFINIDKKEKVVSLLSVEEYF 675 Query: 540 -----VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +T++ G K+ + Y+ + GK + ++++D + + + SV+ ++ Sbjct: 676 EGTYLLTITKNGIAKKTSIEAYKRIQSNGK--FALSLKEDDELFKVITIDDEDSVIIGAN 733 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G V + A + + + L++ ER S YV+ Sbjct: 734 NGKVVHFDSKEIRPMGRTA---SGVIAMKLDKKER------VVGVGKSSEGKYVLSIGDK 784 Query: 655 GNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G ++ +L + N G I++ + ++ V + + T G +R ++ Sbjct: 785 GFGKKTELESYRLSHRNVKGVISLNVKKAGKLNYVGIVKGYEEAIFLTNEGIAIRTELNQ 844 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + R + GV+ I+L D + S+AI+ D + +S+ L + Sbjct: 845 VSE-TSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEKSLELEVSSGPVLDLENNNYG 903 Query: 773 TSLKNDSSVEGNISEE 788 + + + + + Sbjct: 904 IQEEIEDKQDEDQETD 919 >gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] Length = 825 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 362/828 (43%), Positives = 511/828 (61%), Gaps = 35/828 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ I I EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL DL KDTVDF PNYDG EPVVL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG A+I NPDI LME I+GPDFPT ++G +GI+ AY TGRGS+ Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVMGHSGIRQAYTTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE + +I+V E+PYQV KA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRARAIIEDNG-GKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R + +V+LN LY+ T +QS F +NM+AL +P+ L +L ++ + E++ Sbjct: 302 VVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALVNREPKVLNLRDMLYHYLQHQIEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR L+ R Sbjct: 362 RRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L +I E Sbjct: 413 -----------------FSLSLEQAQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II EL +K+ RRT I G ++ DED I RED++++++H GYVK Sbjct: 456 ILADEQLVLDIISTELNEIKERFGDDRRTEITIGEDEILDEDLIPREDVIISITHSGYVK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+QRRGG+G G+ +D+DFV LF+ +TH +LFF+ G VY+ K + +P Sbjct: 516 RLPVTTYRSQRRGGRGVIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN+L + QGE + ++P + N+ Y+ FAT+ G V++ L D+ I Sbjct: 576 SRTARGTPIINLLQIEQGEVVNAVIPVEAFD---NDKYLFFATRQGVVKKTPLDDYANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D+++SV+ +I++ T G +RFP +R GR++ GV+GI L Sbjct: 633 KVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSM-GRSATGVKGIQL 691 Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+VI M IV D Y K I + N + G I Sbjct: 692 DEEDKVIGMEIVHPENDVLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTIVGL 751 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + E ++ ++ ++ G RTS R+ +G++ ++ + + Sbjct: 752 KVVE---NDEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDD 796 >gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] Length = 803 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 353/887 (39%), Positives = 529/887 (59%), Gaps = 91/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DE+ +SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G+ N K A Sbjct: 5 LINRPIEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMAT+IP HNL Sbjct: 125 TRLAEEMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD V +ID+P+ ++ LM+ I+GPDFPTG +++ + +KN Y GRG IV+RG H Sbjct: 185 SETVDALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSELKNVYEEGRGRIVVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ ++IV+TEIPY V+KA ++E+IA+LV++ + + ++RDESD++G RVVIE+ Sbjct: 245 VEEGKR-LKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + + D+I+N LY+ T+LQ F+V M+ ++ K P L G+L+AF+ R EV+ RR + Sbjct: 304 KDTNEDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAE 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y K RAHV+ GL A + VV I+R S + E+AR LM+ Sbjct: 364 YEYEKFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ +SE Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEISEEQAKAILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K+ PRRT I + L + E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVREIMKKEFLYLKERYGDPRRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGGKG + + ++D V + + +S LF ++ G Y K +++ R Sbjct: 518 SYRSQRRGGKGITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 GK + L+L ERI ++P +V TK G ++R L +F G Sbjct: 578 GKHISAFLNLEDTERIVALVPLNG-----KGKDLVIVTKSGKIKRTSLEEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A++++ DEI+S T E + +++ TKLG +RFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIRIEPGDEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM +V Sbjct: 692 DEVVSMDVVPS------------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +E ILTV+EKGFGKRT +R+ R G G+R S +N+ G +VAV V +++ Sbjct: 703 ---EEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNI--SDVNKTGHVVAVRYVKGDEE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR+PV+EI + R TKGV + D+ + V +++ Sbjct: 758 IVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 803 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 95/245 (38%), Gaps = 15/245 (6%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ +L E L V +E+ ++ + G P+++ R R Sbjct: 473 ERYGDPRRTEITDEELRYDVEELIV----EEDVVITLSHKGYLKSTPLNSYRS-QRRGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L++ D+V + + + + ++ ++ + G + ++ Sbjct: 528 GITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L K + ++ V++ G KRTS +F SNR G+RA + Sbjct: 588 EDTERIVALVPLNGKGKDLVIVTKSGKIKRTSLEEFENATSNR---GVRAIRI---EPGD 641 Query: 840 ALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ + +++ + G +IR PV+++R R GV + VVS++ + Sbjct: 642 EIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVP 701 Query: 899 ESEIV 903 E Sbjct: 702 SEEGE 706 >gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 893 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 346/929 (37%), Positives = 511/929 (55%), Gaps = 102/929 (10%) Query: 1 MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + +D + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH Sbjct: 1 MSDEVEEIIGNEGLTDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G + K +R+ GEVMG YHPHG++AIYDALAR+ Q WS+R L+ G Sbjct: 61 RRVLYAMYDGGYRPTASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFG+ PAA RYTEC++ A +L D+ +D+VDF+ NYDG QEPV+L AR+PN Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMAT IP HNL E+ G +++PD + L++ I GPDFPTGA Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL A+ LD V+ +IR SP Sbjct: 360 PRTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E Q AIL L+L RL L Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I+ E L +K+ +I++S R GI+ EL + ++ RRTRIV +M Sbjct: 454 ERLKIQQESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP G ++G+ + N+L+ GE I +M + + ++ Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADFL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ G IA+ L DE++S + D+LL + G Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ + D +++M +V + D D Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V+E G+ KRT+ D+ + Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G++ ++ + G LV + D+++ + G ++R V E+ R T+GV Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 +R+++V R E ++ + ++ + Sbjct: 818 FAKPDAGDRIIAVARSTERDMEEAVDAAD 846 Score = 67.5 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 14/271 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 D +V + G VK+ LS Y + R GG + ++ +L T +L S Sbjct: 628 DFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVS 687 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + + + + ++ + SW + + T+ Sbjct: 688 HAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709 G +R + D+ + G + +K+ + E ++ +++L G+ VR Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GR + GV GD++I++A D + SA +G+ Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIAVARSTERDMEEAVDAAD-SAPSADSADSTGEE 860 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + T+ + ++ S L+ E + Sbjct: 861 QAPTTPEGETGDSPADSAADTVALEDNESEV 891 >gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] Length = 816 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 349/826 (42%), Positives = 519/826 (62%), Gaps = 32/826 (3%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE+ I + I EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + + Sbjct: 3 DEKNTSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R+ L++G GNFGSVDGD PAA Sbjct: 63 KPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K + LL D+ K+TVDF PN+D S +EP+VL AR+PN+LVNG GIAVGMAT Sbjct: 123 RYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP HNLGEV+D V +ID PD D++ LM ++GPDFPTGA+I+G IK AY TGRG I Sbjct: 183 SIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE+ ++QIVVTEIPYQVNKA ++E+IAELV++K+I I+DLRDES+R G Sbjct: 243 KVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKR +A++ILN LY+++ ++ SV M+AL +P+ L +L ++ +++V Sbjct: 303 RIVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTKY LNKA RAH+L GL IA+ N+D V+ IR S A+ +L++R Sbjct: 363 VTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E+Q +AILE+RL RLTGL R+ I E + L +I E Sbjct: 415 ------------------FGLTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL+S LLG+IK E++ +K++ RRT I +++ D I E++ +T++H GY+ Sbjct: 457 EILASEEVLLGVIKDEIIEIKNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P YR+Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V++ + +P Sbjct: 517 KRLPADTYRSQKRGGRGISALTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L GE+I T++ + N Y++ ATK G V++ K+SDF I Sbjct: 577 GKRQAKGTAIVNLLQLGPGEKIATLIDV---DGKEENKYLLIATKKGMVKKTKISDFKNI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG I++ L DE++ V+ E D++L T+ G +RF +R GR ++GV+GI+ Sbjct: 634 NKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTRNGMSIRFSEKDVRGM-GRTAMGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+SM++ + S ++ Sbjct: 693 LGEGDTVVSMSLASEGTDMLVVSENGFGKRTDLEEYRSQI--RAGKGIKTYNISEKTGSI 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 E+ ++ ++ ++ G R + I R G++ +V + Sbjct: 751 VGAEMVAEDDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVDE 796 >gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 893 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 347/929 (37%), Positives = 513/929 (55%), Gaps = 102/929 (10%) Query: 1 MTEHIISSDEEE-------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M++ + +E + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH Sbjct: 1 MSDEVEEIIGDEGATSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+L+ M G + K +R+ G+VMG YHPHG++AIYDALAR+ Q WSLR L+ G Sbjct: 61 RRVLYAMYDGGYRPTASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFG+ PAA RYTEC++ A +L D+ +D+VDF+ NYDG QEPV+L +R+PN Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229 +LVNG GIAVGMAT IP HNL EV G +++PD + L++ I GPDFPTGA Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILGR GI++AY TGRGSI R V ++E+ R+ +VVTE+PYQVN + +KIA+LVR Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL A+ LD V+ +IR SP Sbjct: 360 PRTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR LM G + + E Q AIL L+L RL L Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R I+ E + L +K+ +I++S R GI+ EL + ++ RRTRIV +M Sbjct: 454 ERLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I ED+VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +LFF++ G VY+ K + LP G ++G+ + N+L+ GE I +M + + ++ Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELRDYD---QADFL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ G IA+ L DE++S + D+LL + G Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ +GD +++M +V + D D Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREGDYLLAMDVVDPSWQDAD------------ 737 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V+E G+ KRT+ D+ + Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G++ ++ + G LV + D+++ + G ++R V E+ R T+GV Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 +R+++V R E ++ + ++ + Sbjct: 818 FAKPDAGDRIIAVARNTERDMEEAVDAAD 846 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 16/272 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 D +V + G VK+ LS Y + R GG + ++ +L T +L S Sbjct: 628 DFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVS 687 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + P R + + + +G+ ++ + SW + + T+ Sbjct: 688 HAGQSLRFHADD-DTLRPTGRATSGVTGMRFREGD---YLLAMDVVDPSWQDADLFVVTE 743 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709 G +R + D+ + G + +K+ + E ++ +++L G+ VR Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + + GR + GV GD++I+ + + + D +E + + S D Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIA--VARNTERDMEEAVDAADSAPSAESADSADQ 859 Query: 770 EEITSLKN-DSSVEGNISEERCQELKLKEQFI 800 D+ S L+ E + Sbjct: 860 ARADVPPEGDTGDSPADSAADTVALEDNESEV 891 >gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45] gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45] Length = 919 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 347/904 (38%), Positives = 529/904 (58%), Gaps = 86/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+G GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I +ADLRDES+R G R Sbjct: 309 VRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ LNKA+DR H+L GL +AV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSAR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FNLSEKQTKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIIS 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 ILS + L +I EL +K++ RRT I + ++DED I + D+V+T S GYV Sbjct: 523 ILSDKKLLTELIIDELTEIKNKFADDRRTVIDKNLSASIDDEDLITKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D + + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + Q++G + INI+ + + ++ + +N Y+ ATK G +++ LS+F I Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDNKYLFTATKLGIIKKTSLSEFQII 702 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ + +LL + V+F + R + R + GV+GI+ Sbjct: 703 NINGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHSNEFRALS-RIATGVKGIT 761 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA + IS + + Sbjct: 762 LADDETCISASSSSEGE------------------------------------------- 778 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILT+ GFGK T FR+ +R GKG+ + ++ G LV VN Sbjct: 779 ----------LILTIGRNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEA 906 +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ +DE Sbjct: 826 PHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVKLENDSSIDET 885 Query: 907 ESTE 910 E Sbjct: 886 VDDE 889 >gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B] gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] Length = 837 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 349/844 (41%), Positives = 511/844 (60%), Gaps = 35/844 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E V I++EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 NNNEGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KCARI G+V+GKYHPHG++++YDAL R+AQD+S+R L++G GNFGSVDGD AA R Sbjct: 62 PHRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ ++ D+ K+TVDF PNYDG QEP V+ +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG +I+NP+ + LM I+GPDFPT +I+G++GI+ AY TGRG +V Sbjct: 182 IPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R Sbjct: 242 VRANATIEEDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ +VILNQLY++T LQ F + M+AL +P+ L +L ++ F++EV+ Sbjct: 301 IVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+DEV+ IIR S + A+ L +R Sbjct: 361 TRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQER--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q+ AI+E+RL LTGL R I +EL+ L I + + Sbjct: 412 -----------------FALSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKE 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ + +L II+ EL +K RRT I D+ ED I +VVT++ GY+K Sbjct: 455 ILANEALILNIIRDELNEIKGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ S Y AQ+RGGKG +++D V ++F+ STH +LFFS+ G VY K + +P Sbjct: 515 RIAESTYSAQKRGGKGIQAATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L L E+I ++ E E + Y+VF TK G +++ L DF I Sbjct: 575 GRTAKGTNVINLLLLRPEEKIQAVITLSEFE---KSQYLVFGTKKGIIKKTTLEDFSNIR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++SV + E+ I++ T+ G +RF +R GR + GV+GISL Sbjct: 632 KNGLNAVGLREDDELISVRLSSGEDQIIMVTQNGYSIRFKEEDVRPM-GRTATGVKGISL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D V+SM IV + + + + + V + Sbjct: 691 RDEDNVVSMEIVDESMDILVVSENGYGKRTPIGEYKCQNRGGMGII--TYKVSEKTGKVV 748 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + E I+ ++ R +S + + RS G+ + ++ L ++D Sbjct: 749 AATMVNDEHEIMIINSADIVIRINSKEISTTGRSAMGVTLMRNNDETKV--LAIAKVISD 806 Query: 850 NDQI 853 +++I Sbjct: 807 DEEI 810 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 115/333 (34%), Gaps = 64/333 (19%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 ++ + VV T+ G ++R S + R G A D + ++ + Sbjct: 492 INIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKEDDIVENIFVTSTH 551 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV----------------------------- 724 + IL + G+ I AGR + G Sbjct: 552 DHILFFSNFGRVYTLKGYEI-PEAGRTAKGTNVINLLLLRPEEKIQAVITLSEFEKSQYL 610 Query: 725 -----RGI--------------------SLAKGDQVISMAIVLHADADYDERICYMKHMS 759 +GI L + D++IS+ + D Sbjct: 611 VFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSSGEDQIIMVTQNGYSIRF 670 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 + + E N+ E+ + IL VSE G+GKRT +++ Sbjct: 671 KEEDVRPMGRTATGVKGISLRDEDNVV---SMEIVDESMDILVVSENGYGKRTPIGEYKC 727 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 NR G GI VS+ + G +VA VND +I++++ +IR+ EI R+ G Sbjct: 728 QNRGGMGIITYKVSE--KTGKVVAATMVNDEHEIMIINSADIVIRINSKEISTTGRSAMG 785 Query: 880 VVIFSTAKDERVVSVERI--RESEIVDEAESTE 910 V + + +V+++ ++ + EI D E E Sbjct: 786 VTLMRNNDETKVLAIAKVISDDEEIEDLQEHNE 818 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 97/235 (41%), Gaps = 21/235 (8%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730 + LD+ DE++S+ ++ + K RF +S I R+ G+ + Sbjct: 383 IALDNIDEVISIIRSSKSTN---EAKERLQERFALSEKQSTAIVEMRLRSLTGLERQKIE 439 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 ++ ++ E + + R + + + +++E + ++ Sbjct: 440 DE-----LSELMALINKLKEILANEALILNIIRDELNEIKGRFGDERRTAIEASQNDINI 494 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVND 849 ++L + + ++T++ G+ KR + + R GKGI+A + +V +F + Sbjct: 495 EDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKE----DDIVENIFVTST 550 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901 +D I+ S+ G + + EI A R KG + + +E++ +V + E E Sbjct: 551 HDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEEKIQAVITLSEFE 605 >gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] Length = 842 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 344/844 (40%), Positives = 517/844 (61%), Gaps = 36/844 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Sbjct: 2 NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G IDNP+I + LM I+GPDFPT +I+G++GI+ AY TGRG +++ Sbjct: 182 PPHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+ Sbjct: 242 RSRAEIEEDK-GKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LNQLY++T +Q F + M+AL +P+ +L +L+ ++ F+EEV+ Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEEVIT 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L+KA RAH+L GL IA+ ++DEV+R+IR S A+ LM + Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSK---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTGL R+ I E L +K I Sbjct: 411 ----------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549 LS +S LL IIK EL +K + R++ I++ + + ED I +D+V+T++H GY+K Sbjct: 455 LSDKSLLLKIIKDELNEIKTKYGDERKSEIIQDEGNDIDIEDLIEEKDVVITLTHAGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y AQ+RGG+G + +++DFV + STH ++LFF++LG VY+ K +++P Sbjct: 515 RLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G LIN++ L++ E+I ++ E + + +++ TK G +++ L + I Sbjct: 575 GRTAKGMNLINLIPLDKEEKIQNVIYLKEFK---EDTFLIMGTKKGLIKKTSLDKYASIR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++SV T + +++ TK G +RF + +R GR + GV+ I+L Sbjct: 632 KNGLNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPM-GRTATGVKAITL 690 Query: 730 AKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+V+SM + D Y K + + + S G + Sbjct: 691 REDDEVVSMEVASENRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R E K + ++ +++ G R + D ++R+ G+ ++ + V Sbjct: 751 RFVEDKDE---LMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISE 807 Query: 849 DNDQ 852 D Sbjct: 808 IEDD 811 Score = 81.4 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 53/421 (12%), Positives = 144/421 (34%), Gaps = 35/421 (8%) Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 + + +++ +++II+ N + ++S D + D Sbjct: 439 EEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYGDERKSEIIQD-----EGNDID 493 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + + + ++ I L + + R + + + I +S Sbjct: 494 IEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDN 553 Query: 498 LGIIKQELLSVK---DELDTPRRTRIVEGLLDMEDEDCIVR-----------EDMVVTV- 542 + + ++ RT L+++ D + ED + + Sbjct: 554 ILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEEKIQNVIYLKEFKEDTFLIMG 613 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G +K+ L Y + R+ G + + +R++D + + + + +V++ + G+ + Sbjct: 614 TKKGLIKKTSLDKYASIRKNG--LNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFD 671 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G I + ++ E + N ++ +++G +R + Sbjct: 672 ENDVRPMGRTATGVKAITLREDDE---------VVSMEVASENRDLLVVSENGYGKRTHI 722 Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + R GK + ++ + +++++L G +R +S I R Sbjct: 723 DQYTLQRRGGKGVITYKISEKTGLLIGARFVEDKDELMLINDSGIAIRINVSDI-STTSR 781 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N++GV + ++V++MA V ++ + D +S + +N Sbjct: 782 NAMGVTLMRTVNNEKVVTMAKVNISEIEDDCNNICTSEDEEGNNDLSENNSVEIDEENIQ 841 Query: 780 S 780 Sbjct: 842 E 842 >gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511] gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511] Length = 838 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 357/898 (39%), Positives = 501/898 (55%), Gaps = 84/898 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + + + + +V I DEM+ SY+ YA++VI GRA+P + DGLKPVHRRIL+ M Sbjct: 1 MSSDVPDPTDVQARAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV + K + I GE MG YHPHG++AIYD L RMAQD+S+R L++GQGNFGS+ Sbjct: 61 HEMGVSSGSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDP AA+RYTE R+ + LL D+ KDTVDF NYD QEP VL A +PN+LVNG Sbjct: 121 DGDPAAAQRYTEARMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM+TNIP HNLGEV+D + +ID+PD ++ LM+ ++GPDFPTGA I+GR I +A Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIVGRDAIYSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R +E+ RE+IVVTE+P+Q NKA ++E+IAE V E I I+DLR Sbjct: 241 YKTGRGRIRVRAEFEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKRGA+ +V+ N+L L+ F V +AL +P +L L+ Sbjct: 301 DESDRDGVRIVIELKRGANTEVVKNRLLE-NHLERTFGVINLALVDGQPRVLSLKETLEE 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +VA R EVV RR++Y L +A DRAH+L G AV N D+VV +IR S A+ L Sbjct: 360 YVAHRREVVRRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENL--- 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S+ Q I+ ++L LT + +I E + Sbjct: 417 -----------------------QDAYDFSQDQADHIVRMQLGSLTSMETTEIEEEYEEV 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI+ IL S LL +IK EL +K+E RRT I+E + ED I E++ V Sbjct: 454 QAEIERLNAILESEEELLSVIKDELRGIKEEYGDERRTSIIEDQGTVTHEDLIPEEEVFV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ YVKR+P+ + Q RGGKG G +++ D V+ +F +TH +L F++ G VY+ Sbjct: 514 VMTEDDYVKRMPIDQFDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQ 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P ARGK+ +NIL L+ GE IT I+ + +V AT HG V+R Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFG---DGEFVTMATHHGYVKRT 630 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +F I +G IA L+ DE++ VE D+++ T+ G +RF +R GRN Sbjct: 631 GGEEFDNIRSTGIIAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAM-GRN 689 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L D V + AD Sbjct: 690 ARGVNGIKLQDDDAVAGLVATDEAD----------------------------------- 714 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +LTV+ G+GKRT ++R +R GKG+ N G Sbjct: 715 ----------------GQALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRN--GP 756 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + AV V+D+DQ++++S+ G ++R V+EI R T GV++ + V SV+ I Sbjct: 757 VTAVKAVDDDDQLVMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASVDDIP 814 >gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] Length = 815 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 341/896 (38%), Positives = 520/896 (58%), Gaps = 87/896 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 5 QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA Sbjct: 65 GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAY 124 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMAT Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307 ++RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R + Sbjct: 305 LRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S +P+TA+ LM+R Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER------- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 +VQ +AI++++L RLT L +D+R EL L + I Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 D+L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLG Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 S +RG + ++LS++ E IT ++ E + + Y++ AT G V++ +F Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFA 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 G IA+KLD D+++S +++I+L T+ GQ +R IR GR+S GV G Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L+ D++ V Sbjct: 695 IKLSSEDELTGALRVTE------------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 Q +L ++E G+GKR +F R G R +S+ + G +V + Sbjct: 712 ----------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLT 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V D+D+++ ++ +G IR+ V+ + R+ +GV I + ++ ++ + E Sbjct: 760 VFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815 >gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] Length = 839 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 339/907 (37%), Positives = 515/907 (56%), Gaps = 88/907 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE + V + M+N Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 DEHIFDKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + DL KDTVDF PN+D + +EP VL +RYPN+L NG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +IDN D ++ +++I++GPDFPTG I+G+ GI+ AY T Sbjct: 182 NIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTIIGKLGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GR I +R V++IE + + +IVVTE+PY VNKA ++EKIAELVR+K+I I DLRDES Sbjct: 242 GRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR+G R+ IEL+R + +++LNQLY++T LQ F V M+AL +P+ L +LK ++ Sbjct: 302 DREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQPKVLNLYDMLKYYLL 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTK+ LNKA +RAH+L GL IA+ N+D V+ IIR S N + A+ L+ Sbjct: 362 HQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAE--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSE Q +AI+++RL LTGL R + EL L + Sbjct: 419 -----------------------FALSEAQAQAIVDMRLRALTGLERSKLEAELKELHEK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IKE IL+ + LLG+IK E+ + D+ RRT I D+ ED I E V+ + Sbjct: 456 IKEYKAILADKKLLLGVIKNEISEIADKYGDDRRTSIGYDEYDISMEDLIPDEPCVIART 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +LGYVKR+ +++Q RGGKG G+ D+D++ DLF+ ++H + FF++ G YK K Sbjct: 516 NLGYVKRMTPDNFKSQHRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG A+IN+L L GE IT ++P D Sbjct: 576 YEIPEASRTSRGTAIINLLQLAPGETITAVVPVKIDTLQ--------------------- 614 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + + TK G + P ++ FA G Sbjct: 615 ----------------------------DTDYLFMATKKGIVKKTP---VKEFANIRKTG 643 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 ++ I+L + D++I V D + + M + + +++ Sbjct: 644 IQAINLREDDELIE---VKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMGVIGMSLM 700 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ++ + +L VSE G GKRT ++ + +R GKG++ +++ + G +V Sbjct: 701 DEDEVVGVQVSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITE--KTGNVVG 758 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+D+ +++L++ +G +IR+ ++I R T GV + + + +V ++ ++R+ Sbjct: 759 AKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIAKVRKQPAD 818 Query: 904 DEAESTE 910 ++ + E Sbjct: 819 EDGKDAE 825 >gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ] Length = 832 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 352/901 (39%), Positives = 518/901 (57%), Gaps = 86/901 (9%) Query: 1 MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ + + E I ++I +EM+N YL YA++VI+GRA+PD+RDGLKPVHRR L+ Sbjct: 1 MSDENNTPENGEINHGNIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + NK ++K AR+ G+V+GKYHPHG++A+Y+ L RMAQD+S+R +L++GQGNFG Sbjct: 61 AMYSLNNYHNKPFLKSARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA RYTE R++K + +L DL KDTVD++PNYD S +EP VL + PN+LVNG Sbjct: 121 SIDGDAAAAMRYTEIRMKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP HNL E++ +IDN D+ ++ LM+ I GPDFPT I G GIK Sbjct: 181 SSGIAVGMATNIPPHNLTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSIHGTEGIK 240 Query: 239 NAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 +AY TGRG I IR IE +RE+IV+TE+PYQVNKA ++EKIA+LV K I I+ Sbjct: 241 SAYHTGRGIIQIRAKVDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGIS 300 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D+RDES R+G RVVI+LK+G A VI+N+LY+ T LQ F + ++++ P+ L + Sbjct: 301 DIRDESSREGIRVVIDLKKGEIASVIVNRLYKATQLQVSFGIIFLSISNGSPKVMNLKEM 360 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L+ F+ R EVV+RRT + L KA++RAH+L GL +AV N+DEVV I++ S P A+ +L Sbjct: 361 LECFIDHRREVVIRRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKL 420 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + R LSE+Q++AIL++RL RLTGL RD I + Sbjct: 421 ISR--------------------------FSLSEIQSQAILDMRLQRLTGLERDKIIADY 454 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 ++ EI +IL S + GIIK E + + RRT IV +++ ED + ED Sbjct: 455 EAIMKEIARLEEILGSEDLIRGIIKTEFQEINENYGDERRTAIVAKADEIQIEDLVKNED 514 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 ++VT++H GY+KR+ + YR Q+RGGKG G DEDF TD+F +TH+++LFF++ G Sbjct: 515 VLVTITHKGYIKRMTMDTYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGS 574 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 V+ +KV+ +P G+ A+G+ + N++ + G++I Sbjct: 575 VFSKKVYNIPEGTRTAKGRNIANLIPVPPGDKIKE------------------------- 609 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 M + DE + ++ T+ G + ++ Sbjct: 610 -----------------IMCIPPEDER-------EGKYLMFATEKGLVKKSALTDYNNIK 645 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 G+R I + GD V S V +D D +C + S Sbjct: 646 Q---SGLRAIKVQDGDSVCS---VRVSDGTKDVLLCSTSGKIIRFDESDARPMGRVSQGV 699 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + EL IL+++E G+GKRT++ +R R GKGI A ++ N Sbjct: 700 KGINIDDDERIIGMELIDDSVEILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKN- 758 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G + + PV+D D +++++DKG ++R ++ I + RAT+GV I + E VVSVE+I Sbjct: 759 -GEIKQIKPVSDKDDLMVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSVEKI 817 Query: 898 R 898 Sbjct: 818 V 818 >gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] Length = 921 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 342/892 (38%), Positives = 509/892 (57%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ + Sbjct: 32 ETDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGF 91 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC+R+ GEVMG+YHPHG+++IYDAL R+ QDWSLR L++GQGNFGS DP AA RYT Sbjct: 92 NKCSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYT 151 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECR+ + L+ D+ K TVDF PNYDG EP VL +R+PN+LVNG GIAVGMAT IP Sbjct: 152 ECRMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIP 211 Query: 192 THNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV + V+++PD D + M I+GPDFPTGA+I+GR GI++AY TGRGS Sbjct: 212 PHNLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIMGRKGIEDAYRTGRGS 271 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306 I++R V +E+ R+ +VV+E+PYQVN ++ +KIAE V++ R+ IAD+RDE S R Sbjct: 272 IIMRAVVEVEEIQ-GRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRT 330 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI L+R A A V+LN LY++T LQ+ F NM+AL P + ++ +V + Sbjct: 331 GQRLVIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIDAFIRHWVDHQI 390 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRT YLL +A DR H+L GL A+ LDEV+ +IR SP E AR L+ Sbjct: 391 DVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLI-------- 442 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + + E+Q RAILEL+L RL L R I +E +++ EI++ Sbjct: 443 ------------------DLLEIDEIQARAILELQLRRLAALERQKIIDEHDAIQREIED 484 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R I+ EL ++ ++ RR+ I DM ED I ED+VVT++ G Sbjct: 485 YEDILAKPERQRNIVSDELGTIVEKYGDDRRSIIHGFDGDMSMEDLIPEEDVVVTITRGG 544 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y KR + YR+Q+RGGKG G +R ED V F ++H +LFF++LG VY+ K + L Sbjct: 545 YAKRTKVDAYRSQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYEL 604 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ++G+ + NI++ E I ++ E + Y+V ATK+G V++ +LS++ Sbjct: 605 PDASRDSKGQHVANIMAFQPDEHIAQVLALRNYEI---SPYLVLATKNGLVKKTRLSEYD 661 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724 G IA+ L DE++ + +D+LL +K GQ VRF +R GR++ GV Sbjct: 662 SPRTGGLIAVNLRDEDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPM-GRSTSGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+ D ++SM+++ Sbjct: 721 TGMKFRGEDSLLSMSVIEEG---------------------------------------- 740 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + V E G KR+ + + + R+ G+ ++ + G LV Sbjct: 741 -----------TDPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTE--KGGDLVGA 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V+++D++++V ++G ++R V+E+R+ R T GV K++ +V V R Sbjct: 788 LTVSEDDEVMVVFERGNIVRSRVDEVRLTGRNTAGVWFAKPGKNDAIVGVAR 839 Score = 58.3 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 12/272 (4%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ LS Y + R GG V +RDED + + S+ +L S G Sbjct: 641 PYLVLATKNGLVKKTRLSEYDSPRTGG--LIAVNLRDEDELVGAGLTSSADDLLLVSKKG 698 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + + + ++ E + V + G Sbjct: 699 QSVRFHADDATL-RPMGRSTSGVTGMKFRGEDSLLSMSVIEEGT----DPDVFVVFESGL 753 Query: 657 VRRNKLSDFIQINRS---GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R++ S + R+ +A + + +++ T ++++++++ + G VR + + Sbjct: 754 AKRSQASQWNVKGRAILGVTVAKQTEKGGDLVGALTVSEDDEVMVVFERGNIVRSRVDEV 813 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GRN+ GV K D ++ +A A +E + D + Sbjct: 814 R-LTGRNTAGVWFAKPGKNDAIVGVA-RNAEKAVEEEVAEADAEGVSPVDGSPVDDAAVA 871 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 + D+ E ++ + +E Sbjct: 872 GAQADTDTSAPTGTESDRDTADGVPSVDKTTE 903 >gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] Length = 858 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 348/926 (37%), Positives = 511/926 (55%), Gaps = 102/926 (11%) Query: 1 MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + + I V + EMQ SYL YA++VI+GRA+P++RDGLKPVH Sbjct: 1 MADEETPKKTFEDAPVDTRHDKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+++ M G +K + KC R+ G+VMG++HPHG++++YDAL R+ Q WSLR L G Sbjct: 61 RRVIYAMYDGGYRPDKGFSKCTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS D AA RYTE ++ A ++ D+ +DTV+F+ NYDG QEP VL +R+PN Sbjct: 121 QGNFGSPGNDGAAAHRYTETKMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV +G + + NP+ + L++ I+GPDFPTGA Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILG GI++AY TGRGS+ +R V +E+ R +VVTE+PYQVN + KIA+LV+ Sbjct: 241 QILGVKGIQDAYRTGRGSVTMRAVVSVEELQ-GRTCLVVTELPYQVNPDNLALKIADLVK 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 + ++ IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+A+ Sbjct: 300 DGKLAGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGI 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P ++ G + A+ + EV+VRRT++ L KA +RAH+L G A+ LDEV+ +IR SP Sbjct: 360 PRTLSIDGFITAWATHQIEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 E AR L+ + + E+Q RAIL+++L RL L Sbjct: 420 TVEDARTGLIA--------------------------LLEIDEIQARAILDMQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDM 527 R I +E + +EI E I++S R I+ +EL + + RRT I+ DM Sbjct: 454 ERQKIIDENEEIELEIVEFKAIIASEQRQRDIVSEELTELLAKYGDDRRTEIMLGFDGDM 513 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I E+MVVTV+ GYVKR YR+Q RGGKG G +R +D V LF+ +TH Sbjct: 514 SMEDLIPEEEMVVTVTRGGYVKRTRSDNYRSQHRGGKGVKGAQLRADDIVDHLFVTTTHH 573 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +LFF++ G VY+ K + L G A+G+ + N L+L GE I I+ + E+ Y Sbjct: 574 WLLFFTNTGRVYRAKAYELQEGGRDAKGQHVANFLALQPGEEIAQILDIRDYET---ATY 630 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 +V AT +G V++ LS++ G IA+ L DE++S +D+LL ++ G +R Sbjct: 631 LVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIR 690 Query: 708 FPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 F S +R GR++ GV G+S + D+++S ++V + Sbjct: 691 FTASDEALRPM-GRSTSGVMGMSFREDDRLLSASVVPDSG-------------------- 729 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 ++ V+E GF KRTS+ +R+ R G Sbjct: 730 ---------------------------------YVFVVTEGGFAKRTSADQYRVQGRGGL 756 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 GI+ + G L V D+D++++V G ++R V E+ R T GVV Sbjct: 757 GIKVAKLD--GARGDLAGALMVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARF 814 Query: 886 AKDERVVSVERIRESEIV-DEAESTE 910 A +++++++ R E + E E+ + Sbjct: 815 AAEDKIIAIARNSERNLENKELEAQD 840 >gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)] Length = 846 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 337/891 (37%), Positives = 517/891 (58%), Gaps = 89/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G G+ +K Y K A Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G VMGKYHPH ++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD AA RYTE RL Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L ++ KDTVDF NYD S QEP+VL + +PN+L NG GIAVGMATNIP HNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G ++ N + ++ L E I+GPDFPT A ILG TGI + TGRGS+ +R S Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + ++ IV+T+IPY VNKA ++ KIAELV+ ++I IADLRDES+R+G R+VIE K Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQLY+ T LQ+ FSV M+AL +P+ L L+ ++ + ++++R+T + Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ AH++ GL IA N+D+V+ I+ + + E A+ LM + Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK--------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL L+GL R++++ EL L IK+ +IL ++ Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II +L + + RRT+I G +++E I E +V+T S GY+KR+P+S Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G G+ ++D V L + STH+ +LFF++ G VY+ + ++P+GS ++ Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN++S+ + E++ +++ + ++ Y F+TK G V+R K S+F +I +GKI Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDY----DSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733 A+KL D + V + +I + G VRF +R GR + GV G+ D Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI ++ Sbjct: 707 EVIGLS-----------------------------------------------------S 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + +L V EKG GK T ++R++NR KG+ V+ + G ++ VN N+++ Sbjct: 714 SHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++S G ++RVP+ E+ R T GV + S + E + SV I + E D Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA-IFDVEQDD 821 >gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485] gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485] Length = 824 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 359/841 (42%), Positives = 513/841 (60%), Gaps = 42/841 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSIT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM MG N+ Y K A Sbjct: 6 VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GK HPHG++A+YDALARMAQ WS+R LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL ++ KDTVDFR N+DGS++EPVVL A PN+L+NG GIAVGMATNIP HNL Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ D +ID+P+ ++ LMEII GPDFPT +ILG GI AY+TGRG I +R +H Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ IVVTE+PYQVNKA + E+IAELV++++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILLK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F +NM+AL + +P TL +L+ ++ R+EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR+RAH+L GL IA+ NLD V++ IR S E+AR LM Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLM--------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E Q +AILEL+L RL L R I E + I E DIL++ Sbjct: 411 -----------RNFSLTERQAQAILELQLRRLAALERQKIEEEYREVIKLIAELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +IK++L +K++ PRRTRI+ ++ DED I +++T++ GY+KR Sbjct: 460 PRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR QRRGG+G G++ R++D V L ++ ++LFF+ G VY+ K +P S Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE++T+++ E + Y+V AT G ++R +L ++ Q+ +G Sbjct: 580 AKGLPLVNLVSLEPGEQVTSMLAVREF----DAEYLVMATVRGKIKRTQLREYSQVRSNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ D + V DILLTT GQ +RF S +R GR + GV GI+LA+G Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLAEG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + + +A + E ++E Sbjct: 695 DRVVSMDLAEEGADLLVVTARGIGKRTALSEYPLKGRATGGVITIKLRNE---TDEVAAA 751 Query: 793 LKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++E +LT ++ G RTS+ + R+ +G+ +V+ + VA V D D Sbjct: 752 AVVREHSLLTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDR----VAALSVEDPD 807 Query: 852 Q 852 + Sbjct: 808 E 808 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 55/319 (17%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 +++ + ++ T G ++R + R G M +D + + TC Sbjct: 494 VSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSL 553 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD- 749 +++L T G+ + + + R + G V +SL G+QV SM V DA+Y Sbjct: 554 DNLLFFTDRGKVYQIKAHEV-PDSSRTAKGLPLVNLVSLEPGEQVTSMLAVREFDAEYLV 612 Query: 750 --------------------------------------------ERICYMKHMSAQRRLI 765 E I R Sbjct: 613 MATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFE 672 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ--FILTVSEKGFGKRTSSYDFRISNRS 823 + + +R + L E+ +L V+ +G GKRT+ ++ + R+ Sbjct: 673 QSEVRPMGRPATGVIGINLAEGDRVVSMDLAEEGADLLVVTARGIGKRTALSEYPLKGRA 732 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ + NE + A V ++ + ++ G ++R +EI RAT+GV + Sbjct: 733 TGGVITIKL--RNETDEVAAAAVVREHSLLTFITTGGMVMRTSASEISRLGRATQGVTVV 790 Query: 884 STAKDERVVSVERIRESEI 902 + A +RV ++ E Sbjct: 791 NVASGDRVAALSVEDPDEN 809 Score = 81.0 bits (198), Expect = 8e-13, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 71/168 (42%), Gaps = 6/168 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ D K + + +S E+ + + E ++L + Sbjct: 445 EVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVR 504 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++T++++G+ KR +R R G+GI+ + + + L N D ++ +D Sbjct: 505 VMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHL---LTCNSLDNLLFFTD 561 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +G + ++ +E+ +SR KG V + S E+V S+ +RE + Sbjct: 562 RGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQVTSMLAVREFDAE 609 >gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] Length = 815 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 342/842 (40%), Positives = 527/842 (62%), Gaps = 33/842 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I + I++EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ MM+ G+ +K Sbjct: 2 DTNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R LL++GQGNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A LL D+ K+TVDF PN+D S +EP+VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEARMSKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D V IDN D D+D L++ ++GPDFPT A I+G GIK AY TGRG + + Sbjct: 182 PPHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QIVVTEIPYQVNKA ++EKIA+LV+EK++ I+DLRDE++R+G R+ Sbjct: 242 RAKAEIEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR +A+++LN LY+++ L+ FS+ M+A+ P+ L +L ++ +++V+ Sbjct: 302 VIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKDVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA RAH+L GL IA+ N+D V+ IIR S + A+ L++ Sbjct: 362 RRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL RLTGL R+ I E L I+ I Sbjct: 412 ----------------FALSEIQAQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+IK+E+L++K + + PRRT+I+ + + +D ED+ +T++HLGY+KR Sbjct: 456 LADELKLLGVIKEEMLAIKAKHEDPRRTQIIPAEGEFDVKDLFEEEDVAITLTHLGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G + + R+EDFV +L +T++++LFF++ G VYK + +P G Sbjct: 516 LPADTYKSQKRGGRGIAALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESS-WNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G A++N+L LN GE++ + F D + + Y++ ATK+G V++ ++S+F IN Sbjct: 576 RTSKGTAIVNLLQLNPGEKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNIN 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SG IA+ L DE++ V +++L T+ +RF + +R GR + GV+GI+L Sbjct: 636 KSGLIAINLKDGDELIGVNMTDGNQEVVLVTENAMSIRFNEADVRPM-GRTATGVKGITL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +K D+V+SM ++ D S ++ + Sbjct: 695 SKDDRVVSMNLIGEGDNLLVVSQNGFGKRSDVEEYRPQI--RGGKGIKTYNITSKTGKIV 752 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 L ++ ++ ++ G R + I R G++ + +V++ + Sbjct: 753 GSSLVNEDDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDE---EVEVVSIAKIKA 809 Query: 850 ND 851 D Sbjct: 810 ED 811 >gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] Length = 820 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 342/891 (38%), Positives = 510/891 (57%), Gaps = 91/891 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + I+S SITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RRIL+ M++ G+ N Sbjct: 2 ENISNERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + KCA + GEV+ YHPHG++++YD L RMAQ W +R LI+ QGNFGSVDGD PAA Sbjct: 62 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAY 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL A LL ++ +DTVDF NY S EP VL A PN+L+NG GIAVGMAT Sbjct: 122 RYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++DG A IDNP+I + L E+I+GPDFPTG I+GR GI TGRG + Sbjct: 182 NIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRIIGRKGIDEYMNTGRGIV 241 Query: 249 VIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +RG E G RE+I+++ IPY VN+A ++ KIAELV K + I+DLRDESD Sbjct: 242 RMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESDE-N 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKRG +VI+++LY+ T+L++ F VNM+AL+ +P++ + ++ ++ R E Sbjct: 301 TRIVIELKRGEFPEVIISKLYKKTALEASFGVNMLALDNKRPKQMNMKEMINCYIDHRRE 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT + L KA DRAH+L G IA+ NLD+ ++IIR S N + A+ L ++ Sbjct: 361 VIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEK------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q AIL+LRL +LTG+ R I E L I+E Sbjct: 414 -------------------YPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEEL 454 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL + +LL IIK+EL +K++ +PR+ IV D+ D +E +T+SH G+ Sbjct: 455 RSILENEYKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFITISHKGF 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV S +R Q+RGGKG G ++DFV +F +TH +++FF + G VY EKV+ LP Sbjct: 515 IKRVSDSEFRTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 GS ++G+++ N+L L + E+I ++ E + +V TKHG V++ L+ + Sbjct: 575 EGSRTSKGRSINNVLQLQKEEQIAAMICVKE---ITEDFNLVMCTKHGTVKKTNLAAYKN 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I + +D D +++V+ +++++++ T LG+ +RF S +R GR + GVRG+ Sbjct: 632 FRKGGIIGINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLRE-QGRATRGVRGV 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L++ D +M +V + A Sbjct: 691 KLSEKDYAQAMEVVDNESA----------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L G GKRT+ +F + R G G+ A + V Sbjct: 710 ------------LLICGINGQGKRTTFDEFPLQKRGGSGVIAAKT------AGVAGALAV 751 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++D+I++++ G +R V +I + R TKGV + K + ++ + RI Sbjct: 752 RESDEIMMLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIARIV 802 >gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae BRL-230010] Length = 790 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 348/821 (42%), Positives = 507/821 (61%), Gaps = 33/821 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ K+T+D+ PNYDG QEPVVL AR+PN++VNG GIAVGMATN Sbjct: 123 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +I+NPD+ LM I+GPDFPTGA ILGR GI+ AY+TGRGS+ Sbjct: 183 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ ++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRAKTTIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN L+++T+LQS F + +AL +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM++ Sbjct: 362 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L +I E Sbjct: 413 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II +EL ++ RRT I G +EDED I RE++V+T++H GYVK Sbjct: 456 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGG+G G+ ++ DFV LF+ ++H ++FF+ G VY+ K + +P Sbjct: 516 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++P E + ++ FAT+ G V++ L D+ I Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIPIESFE---SGHFLFFATQQGIVKKTPLKDYNNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ +I++ T+ G + FP +R GR + GV+GI + Sbjct: 633 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGIHI 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D VI M IV + + + + + Sbjct: 692 SEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVV 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++ +++ ++ ++ G RTS I R+ +G+R Sbjct: 750 GLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 790 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 74/208 (35%), Gaps = 9/208 (4%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERI 752 ++ T G R P+S R R GV G+ D V + + D+ Sbjct: 505 VITITHSGYVKRLPVSTYRS-QRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGK 563 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 Y L ++ E F+ +++G K+T Sbjct: 564 VYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIPIESFESGHFLFFATQQGIVKKT 623 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 D+ + G+ A ++ + L+ V + N II+ + +G I P ++R Sbjct: 624 PLKDYNNIRKG--GLIAINLRE---DDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRS 678 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900 RA GV ++D+ V+ ++ + E+ Sbjct: 679 MGRAATGVKGIHISEDDAVIDMDIVDEN 706 Score = 97.2 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 12/274 (4%) Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692 +++ V+ T G V+R +S + R G + M + D + + Sbjct: 492 AIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNS 551 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYD 749 + ++ T G+ R I GR + G I+L +G+ V + ++ + Sbjct: 552 HHYLMFFTDKGKVYRLKAYEIPEL-GRTARGTPIINLIQIEQGETVNA--VIPIESFESG 608 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 + + ++ D I + +L I+ + +G Sbjct: 609 HFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMS 668 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 D R R+ G++ +S+ A++ + V++N+ +++V+ KG R P++E Sbjct: 669 IHFPERDVRSMGRAATGVKGIHISE---DDAVIDMDIVDENNTVLIVTSKGFGKRTPMSE 725 Query: 870 IRIASRATKGVVIFS-TAKDERVVSVERIRESEI 902 RI +R KG+ + T+K+ VV ++ + E E Sbjct: 726 YRIQTRGGKGIKTLNVTSKNGPVVGLKVVEEDED 759 >gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402] Length = 815 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 340/896 (37%), Positives = 519/896 (57%), Gaps = 87/896 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 5 QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA Sbjct: 65 GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAY 124 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMAT Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307 ++RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R + Sbjct: 305 LRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S + +TA+ LM+R Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMER------- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 +VQ +AI++++L RLT L +D+R EL L + I Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 D+L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLG Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 S +RG + ++LS++ E IT ++ E + + Y++ AT G V++ +F Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFA 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 G IA+KLD D+++S +++I+L T+ GQ +R IR GR+S GV G Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L+ D++ V Sbjct: 695 IKLSSEDELTGALRVTE------------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 Q +L ++E G+GKR +F R G R +S+ + G +V + Sbjct: 712 ----------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLT 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V D+D+++ ++ +G IR+ V+ + R+ +GV I + ++ ++ + E Sbjct: 760 VFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815 >gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon] Length = 843 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 349/920 (37%), Positives = 541/920 (58%), Gaps = 100/920 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + E + + VS+ DEM +SY+ YA++VI+GRA+PD RDGLKPVHRRIL+GM Sbjct: 1 MSED--QREAEVRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++GV N+ + K ARI G+V+GKYHPHG+ A+YD + RMAQD+S R L++GQGNFGSV Sbjct: 59 HELGVTHNRPHKKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K A LL DL KDTV++ PN+D S +EP +L A+ PN+L+NG Sbjct: 119 DGDAAAAMRYTEARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P HNL EVVDG + VI+ P++ ++ LM+II+ PDFPTG +I+G GIK A Sbjct: 179 GIAVGMATNMPPHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI IR + IE G +E+IV+ EIPYQVNK+ ++E+IAE ++ ++ I+ LR Sbjct: 239 YETGRGSIRIRAKAEIE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G R+VIELK GA++ +ILN+LY++T L++ F V +AL +P TL +++ Sbjct: 298 DESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIEC 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ R+EV +RR +Y L +A R H+L GL IA++N+DEV+R+I+ + + +TA+ L+ R Sbjct: 358 YIKHRKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE Q + IL++RL+RL+ L RD I E L Sbjct: 418 --------------------------FELSEEQAKEILDMRLSRLSALERDKIETERAEL 451 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I ++L S +R+ ++K++L+ KD+ RRT I E + + D + +++++ Sbjct: 452 ETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNIEEMVTL-SERDFVEEKEVIL 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++ YVKR+P +++ Q RGGKG + + +++D + + ST ++FF+ G Y+ Sbjct: 511 YLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQ 570 Query: 601 EKVWRLPIGSPQARGKALIN----ILSLNQGERITTIMPFPED-----ESSWNNLYVVFA 651 K + +P S ++GK L+N +S + E+ T + PE+ E++ Y+VFA Sbjct: 571 VKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----------QENDILLTTK 701 TK G V+R+ L+ I +G +A++ D + V +N I+L++K Sbjct: 631 TKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSK 690 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G+ + F +R GR + GVRG+ L K D++ S+ + + R Sbjct: 691 NGKAIFFHEEELREM-GRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAV-------- 741 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 T++EKG+GKRT +R ++ Sbjct: 742 ----------------------------------------TITEKGYGKRTKLDAYRETH 761 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R GKG+ + + N G +V + V + D++++ + G + ++ V I + R T+GV Sbjct: 762 RGGKGVISIKTGERN--GKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVR 819 Query: 882 IFSTAKDERVVSVERIRESE 901 I + K ERVV+V+ + +E Sbjct: 820 IMNVKKGERVVAVDILSATE 839 Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 95/249 (38%), Gaps = 24/249 (9%) Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730 + + + + DE++ + + T K RF +S + + + + L+ Sbjct: 387 LIIAISNIDEVIRLIKAASD---TKTAKSALIARFELSEEQ------AKEILDMRLSRLS 437 Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ + L ++ + + + + ++ + + Sbjct: 438 ALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNIEEMVTL 497 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ +++ IL ++++ + KR + F+ R GKGI + E +V + Sbjct: 498 SERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVI---EKKEDDKIVNFIRAS 554 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-------TAKDERVVSVERIRESE 901 +++I ++ G +V EI +SR +KG + + T + E+ V+ I E Sbjct: 555 TRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEV 614 Query: 902 IVDEAESTE 910 +TE Sbjct: 615 DKGIETNTE 623 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 63/188 (33%), Gaps = 17/188 (9%) Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 +++++++ + + + + + + Sbjct: 492 EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFI 551 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-------RATDVSKINEIGALVAV- 844 + ++ +E G + +Y+ S+R KG + + + VA+ Sbjct: 552 RASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIP 611 Query: 845 FPVNDNDQ-------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ + ++ + +G + R + +++ R+T GVV T K + + V I Sbjct: 612 EEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAI-RST-GVVAVRTTKGDSLADVVLI 669 Query: 898 RESEIVDE 905 + S + Sbjct: 670 KPSLDSQD 677 >gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1] gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1] Length = 811 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 337/898 (37%), Positives = 496/898 (55%), Gaps = 89/898 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E +G+ ++I +EM++ Y+ YA++VI+GRAIPD RDGLKPVHRR L+ M +MG +K Sbjct: 2 TSEGEGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIYD L +MAQ +S R +L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + LL D+ K TVDF PN+D S QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 +P HNL EV + VID+ + LM+++ GPDFPTG +++G GI++AY TGRG V Sbjct: 182 MPPHNLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RGV+ IE+ QI++TEIP+QVNKA ++E IA LVR+KRI I D+RDESDR G R Sbjct: 242 VRGVAEIEEEGR-TPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ELKRGA+ VILN LY++T+L+S F + +A+ +P L I+ F+ R +VV Sbjct: 301 IVVELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L K +R H+L GL +A+ N+D V+ IR S + A++ L+ + Sbjct: 361 RRRTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAK--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L EVQ AIL+++L RL L I +E +++ EI+ Sbjct: 412 -----------------FALDEVQADAILKMQLRRLAALEHQKILDERDAIAAEIERLSA 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S + +L IK+EL+ + RRTRI + + ED I + ++V+++ YVK Sbjct: 455 ILASEASILAEIKKELVDIGARFGDERRTRIAQAAEAFDREDLIEDKPVLVSLTSSNYVK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L YR QRRGG G G+ +D D V +F+ + H ++L F+ G +Y K++ LP G Sbjct: 515 RIDLDTYRNQRRGGHGVIGMATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEG 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +GKAL+N+L+L+ ER+TT Sbjct: 575 QRTGKGKALVNLLNLDGEERVTT------------------------------------- 597 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGIS 728 ++ V ++ + T+ G + + R G+ I+ Sbjct: 598 --------------VIPVREYRPDHHLFFATRNGTVAKMALDEFSRPRQ----TGINAIN 639 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ + E I K + R + ++ + Sbjct: 640 LRDGDALVDVKATD----GNQELILTTKFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDA 695 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++ +LT++E+G+GKRT ++R R G+R V G +V V+ Sbjct: 696 LQAIAIVEDDHLLTITEQGYGKRTEFDEYRGHGRGTLGVRNIVVDAR--AGNVVGSMAVS 753 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 D+D+II++S G +IR V+EI I R T+GV + +RV+ + E +EA Sbjct: 754 DDDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEPEEEA 811 >gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100] gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100] Length = 858 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 361/909 (39%), Positives = 542/909 (59%), Gaps = 118/909 (12%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I ++ I +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MENIFTKDSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R ++GQGNFGS+DGD Sbjct: 61 GSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + +IDN + L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IA+L +EK+I IA++RDESDR Sbjct: 241 GRVKVRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +LK F+ R Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLKLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+ TA+ LMQ+ Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q+ AIL+++L RLTGL R+ I NEL L EI+ Sbjct: 415 ---------------------FGLSELQSNAILDMKLGRLTGLEREKIDNELKELLAEIE 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +IK EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLDEILKSEALLENLIKDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ + F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ + Sbjct: 631 QNIRSVGVKAINLDENDELVTAIIVARDENEMSNQALEDEENLENEVLENNEELENVAVG 690 Query: 696 --ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERI 752 + TK G C++FP++ +R GR S GV I + D+++ ++ + Sbjct: 691 KMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDA------- 742 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 Q IL+VS KG GKRT Sbjct: 743 ---------------------------------------------QEILSVSAKGIGKRT 757 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 + ++R+ +R GKG+ ++ + L++V V+++ ++ ++ G +IRV + IR Sbjct: 758 DAGEYRLQSRGGKGVICMKLNAKTK--DLISVVIVDESMDLMALTTSGKMIRVDMQSIRK 815 Query: 873 ASRATKGVV 881 A R T GV+ Sbjct: 816 AGRNTSGVI 824 >gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP] gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis] Length = 887 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 350/902 (38%), Positives = 534/902 (59%), Gaps = 87/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE G+ V+++ EMQNS+L YA++VI+ RAIPD RDGLKPVHRRIL+GM +G+ + Sbjct: 58 EEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSS 117 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG+A++Y+A+ RMAQ++S+R L++G GNFGS+DGDP AA R Sbjct: 118 AFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMR 177 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L+ + K+TV+F PNYD S EP VL +R+PN+LV GG GIAVGMAT Sbjct: 178 YTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATT 237 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 I HNL E + +A NP I L LME I+GPDFPTG +ILG GI +A+ TG+GSI Sbjct: 238 IAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTKGIIDAFETGKGSIS 297 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE S + +I+V+EIPY V K ++EKIA LV+EK I I+DLRDE++R+G R Sbjct: 298 IRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIR 357 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ +V+LN+L++ T+LQ F+VNMVAL +P+ +L L+ ++ ++E+V Sbjct: 358 IVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGEPKLLSLKDALRVYLDHQKEIV 417 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RR K+ L K+ R H+L GL IAV+N+DEV+RIIR S A+ +L Q+ Sbjct: 418 IRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQK--------- 468 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+QT+AI+E+RL RLTGL + + E+ L I I + Sbjct: 469 -----------------FSLSEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKE 511 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S +L+ +I +EL +K++ R T+I + ++ DED I ++ + S GYV Sbjct: 512 ILNSEQKLIDLIVEELEEIKEKYGDKRLTQIDSYAIANISDEDLIPERNIAIIQSVKGYV 571 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ LS Y+ Q RGG G S ++D + + +THT +L F+S VY+ + ++P Sbjct: 572 KRINLSEYKVQNRGGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPE 631 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G IN++ + + E + +I+P + + ++V T++G +++ K+ F +I Sbjct: 632 SSKQSKGIPFINLIQIEKDEEVVSILPAQNYD---DGKFLVTLTQNGLIKKTKIEHFQRI 688 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GKIAM + D+++ + +I++ + G+ VRF +S +R GR S GVR I Sbjct: 689 NTNGKIAMVILENDKLVRAMILNNDEEIIVGSSEGKIVRFDLSEVRD-TGRKSAGVRAIK 747 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA + IS++ Sbjct: 748 LAPKHKAISLSA------------------------------------------------ 759 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +++ ++ GFGK+T D+R + R+ KG+ V ++ G LV V Sbjct: 760 -----SSEGKYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKV---DKAGKLVHSGFVE 811 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ II+++ KG IR + ++ SR+TKGV I KDE++ S+ I ++I +E Sbjct: 812 GSEDIIILNSKGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVNKIDEEISK 871 Query: 909 TE 910 T+ Sbjct: 872 TQ 873 >gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] Length = 898 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 324/904 (35%), Positives = 517/904 (57%), Gaps = 89/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ G+ + M++S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ Sbjct: 65 ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGS+DGD AA R Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A ++D + K+TVDF NYDG+ +EP VL +R+PN+LV+G GIAVGMATN Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D A+ NP+I +D LME + PDFPTGA I + G+ AY TGRGSI Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSIT 304 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++I++ + + +I++TEIPY+V K ++EKIA+ ++ KRI I+D RDES+R G R Sbjct: 305 MRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIR 364 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI++K+ A +VILN LY+ T LQ+ FS NM+AL +P+ L L+ ++ + +V Sbjct: 365 VVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVT 424 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L K RAH+L GL I V N+D V+ II+ S A+ +L Q Sbjct: 425 RRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQ---------- 474 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE+Q +AI+++RL RLTGL + + +EL+ + I E Sbjct: 475 ----------------TFSLSEIQAKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRA 518 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 ILSS +L+ +I +EL VK+ RR+ I + + +ED I ++++V+T+S Y+ Sbjct: 519 ILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDVMSSINNEDLIPQKEIVITLSSNNYI 578 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR QRRGG G S V +D + D+ + +TH +L F+ +Y+ + +P Sbjct: 579 KRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPS 638 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G+ Q++G ++NI+ + + E++ I+ + E + ++ T+ G +++ L ++ Sbjct: 639 GTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYE---ESQSLITVTERGVIKKTNLKEYEL 695 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I ++GK A+ L D ++ V Q+ +I + + RF ++ +R GR + GV GI Sbjct: 696 IRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAASNSRINRFNVADVREM-GRVARGVGGI 754 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L+ D+V+S++ Sbjct: 755 RLSDDDKVVSVSSSKDG------------------------------------------- 771 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +I ++ KG+GK + +R + R+ KG+ + ++ G LV V Sbjct: 772 ----------AYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLN---EDKAGKLVYAAAV 818 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 + + +I+++ G IR+ + +I + R KGV I + +++V V +I + + D Sbjct: 819 HGVEDLIIMTQSGIAIRISLRDINVIGRNAKGVKIINLKGRSDQIVGVAKIYDEDATDRE 878 Query: 907 ESTE 910 + E Sbjct: 879 LTKE 882 >gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica] Length = 855 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 352/914 (38%), Positives = 521/914 (57%), Gaps = 99/914 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 I +++ +E+ S+L Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+GV K + Sbjct: 2 SNDSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 VKCA+I GE MG +HPHG+ +IY L M Q WS+R +L++GQGNFGSV+GD A+ RYT Sbjct: 62 VKCAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +++DL K TVDF+PNYDGS +EP VL + +PN LVNGG GIAVGMATN+ Sbjct: 122 EARLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLA 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG A ID PDI L LM+ I+GPDFP I G GI+ + TGRGS+ +R Sbjct: 182 PHNLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIRGIEEYFRTGRGSMRLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+ + IV+ E+PY VN+A + E+IAELV EK + I+ +RD SD + R+ Sbjct: 242 GKVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEE-TRIE 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A V++ QL++ T+L++ FSVNM+A++ +P++ +L + A++ R +V++R Sbjct: 301 IELKRDARPQVVVAQLFKLTALETSFSVNMLAIHQNRPKQLSLKEAIDAYIEHRRDVIIR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++LL KA +RA +L +A+ +LD+ +RIIR S N + AR R Sbjct: 361 RTRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDR----------- 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SE Q AILELRL +LTG+ +D ++ E + + IEIK+ LDIL Sbjct: 410 ---------------YVFSERQVNAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDIL 454 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R+L IIK EL ++D+ TPR+ I+ ++ ED I + M+VT+SH GYVKR Sbjct: 455 AREVRVLTIIKDELRVIRDKYATPRKCPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRT 514 Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 P + YR Q RGGKG G+ + +DFV LF V H +LFF++ G VY E+V+ Sbjct: 515 PATEYRLQGRGGKGLKGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF--------PEDESSWNNLYVVFATKHGNV 657 LP GS + G+++ N+L+L E+I ++ + + +V FAT++G V Sbjct: 575 LPEGSRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKV 634 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRV 715 ++ L+DF + G IA+ LD ++++ V + E++I+L T+ G ++F IR Sbjct: 635 KKTALNDFRNYRKDGIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRP 694 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV GI L K D V+ MAIV Sbjct: 695 -QGRATAGVTGIRLRKDDYVVGMAIVSE-------------------------------- 721 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 E +L SE G GKRT+ +R R G G++ +V+ Sbjct: 722 ---------------------ETMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVT-- 758 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ G +V V + D+++L++ G IR+ VNEIR R +GV + + + E++ + Sbjct: 759 DKTGKVVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKEGEKLQDIS 818 Query: 896 RIRESEIVDEAEST 909 + D S Sbjct: 819 LVIPDGEDDAGSSD 832 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 19/263 (7%) Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576 RT G ED V + G VK+ L+ +R R+ G + ++ Sbjct: 607 RTTDDNGNDITFREDAG----FVFFATRNGKVKKTALNDFRNYRKDGIIAINLDEGNDLI 662 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 L S ++ + G K R P PQ R A + + L + + + + Sbjct: 663 GVSL--TSGEDEIVLVTRDGMSIKFTEGR-PQIRPQGRATAGVTGIRLRKDDYVVGMAIV 719 Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693 E+ ++ A+++G +R S + + R G L+ D+ ++ + T++ Sbjct: 720 SEETM------LLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVTDKTGKVVNAVSVTEQ 773 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDER 751 ++++L T GQ +R ++ IR GR + GV+ ++L +G+++ IS+ I D Sbjct: 774 DELMLMTSTGQSIRIRVNEIRE-TGRVAQGVKLLTLKEGEKLQDISLVIPDGEDDAGSSD 832 Query: 752 ICYMKHMSAQRRLISGDTEEITS 774 + + +E+ + Sbjct: 833 ATTAEDAGPPSGDDTQASEDAAN 855 >gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1] gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1] Length = 919 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 353/882 (40%), Positives = 513/882 (58%), Gaps = 40/882 (4%) Query: 1 MTEHIISSDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52 M + + V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPV Sbjct: 1 MADDTTDKPATPPASPPPSGAGELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPV 60 Query: 53 HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 HRR+L+ M +G N+ Y K AR+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++ Sbjct: 61 HRRVLYAMHDLGNTHNRAYKKSARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVD 120 Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 GQGNFGSVDGD PAA RYTE R+ + A LL D+ K+TVDF PNYD S EP+V+ ++P Sbjct: 121 GQGNFGSVDGDSPAAMRYTEVRMDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFP 180 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232 N+LVNG GIAVGM TNIP HN+GEV+DG + +ID+P + LM+ I GPDFPT A I Sbjct: 181 NLLVNGSTGIAVGMTTNIPPHNMGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291 GR GI AY TGRG I IR + IE + RE I++TEIPYQVNKA ++EKIA+LVREK Sbjct: 241 GREGIARAYETGRGQITIRARTEIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREK 300 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 ++ I+D+RDESDRQG R+ IELKR A + V+LN L+ T L++ F M+A++G +P Sbjct: 301 KLEGISDIRDESDRQGMRIFIELKRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRT 360 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L +L F++ R +V+ RRT+Y L KA R H++ GL +A +D VV +IR S +P+ Sbjct: 361 LNLKELLDRFISHRRDVITRRTRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPD 420 Query: 412 TARRELM-----------------------QRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 AR LM ++ + D Sbjct: 421 EARWGLMHILSSELYEHERFGNLPRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQG 480 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 SE+Q + ILE+RL RLTGL R+++ EL +L +I DIL+ S LL +IK EL + Sbjct: 481 FSEIQAQNILEMRLQRLTGLQREELFKELLALVRDIARLRDILAHESSLLNVIKTELQDI 540 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 + RRT I + ++ ED I EDMVVT+SH GYVKR PL+ YRAQ+RGG+G++G Sbjct: 541 RARYGDKRRTEITGEVSEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTG 600 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 +++DFVTDLF+ STH ++ ++ G +Y KV ++P S +RGKA+IN++ + E Sbjct: 601 ATTKEDDFVTDLFVASTHAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDE 660 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 ++ ++ + N +V F TK G V+R LS F + SG IA+ ++ DE+++V+ Sbjct: 661 KLAQVLVTRDFP---ENRFVFFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVK 717 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 D+LL+T G +RFP +R GR + GV+GI+L GD+V+ +V Sbjct: 718 ITDGSKDVLLSTAQGMSIRFPEEEVRSM-GRQAYGVKGITLVDGDEVVGADVVEKDATIL 776 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 + + + ++ Q E +L V+ G Sbjct: 777 TVTENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADE--VLLVTNGGM 834 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 R + + + R+ +G+R + N + + + ++ Sbjct: 835 LIRMKAREISVIGRNTQGVRLIAL--ENGTEKVTGISKLPES 874 Score = 69.1 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 99/260 (38%), Gaps = 16/260 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V V+ G VKR LS + R G + + + D + + I VL Sbjct: 671 FPENRFVFFVTKKGVVKRTDLSAFANVRVSG--IIALGIEEGDELVAVKITDGSKDVLLS 728 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G + + QA G I ++ ++ + + ++ T Sbjct: 729 TAQGMSIRFPEEEVRSMGRQAYGVKGITLVDGDE---------VVGADVVEKDATILTVT 779 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R + +++ R GK + + +++ + +++LL T G +R Sbjct: 780 ENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADEVLLVTNGGMLIRMK 839 Query: 710 ISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 I GRN+ GVR I+L G ++V ++ + + + ++ + + L Sbjct: 840 AREI-SVIGRNTQGVRLIALENGTEKVTGISKLPESSNESEDTLEGEAAGGEPQALAESS 898 Query: 769 TEEITSLKNDSSVEGNISEE 788 E ++ G+ SEE Sbjct: 899 EEPPAEPSGEAESGGDPSEE 918 >gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] Length = 804 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 346/887 (39%), Positives = 527/887 (59%), Gaps = 90/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K A Sbjct: 5 LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + S +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR + Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++D V + + S LF ++LG Y K ++L R Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 G+ + L+L E+I + D + +V TK G ++R L +F G Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+K++ DEI+S E + +++ TK+G VRFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ ++ D Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV+EKGFGKRT +RI R G G+R S +N+ G +VAV V +++ Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR PV+EI + R TKGV + D+ + V +++ Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ + +E L V +E+ ++ + G P+++ R R Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L + D+V + + + + ++ +L + G + ++ Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L ++ V++ G KRT+ +F SNR G+RA + Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641 Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ VN + ++V + G +R PV+++R R GV + VVSV+ I Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701 Query: 899 ESEIVDEAESTE 910 + + TE Sbjct: 702 PGDEGEILTVTE 713 >gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] Length = 804 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 346/887 (39%), Positives = 527/887 (59%), Gaps = 90/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K A Sbjct: 5 LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + S +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR + Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++D V + + S LF ++LG Y K ++L R Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 G+ + L+L E+I + D + +V TK G ++R L +F G Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+K++ DEI+S E + +++ TK+G VRFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ ++ D Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV+EKGFGKRT +RI R G G+R S +N+ G +VAV V +++ Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR PV+EI + R TKGV + D+ + V +++ Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ + +E L V +E+ ++ + G P+++ R R Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L + D+V + + + + ++ +L + G + ++ Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L ++ V++ G KRT+ +F SNR G+RA + Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641 Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ VN + ++V + G +R PV+++R R GV + VVSV+ I Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701 Query: 899 ESEIVDEAESTE 910 + + TE Sbjct: 702 PGDEGEILTVTE 713 >gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826] gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826] Length = 873 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 376/954 (39%), Positives = 556/954 (58%), Gaps = 135/954 (14%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M ++++ E + I SV I D ++NSYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MKDNLL----ELTQDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y+K ARI GEV+GKYHPHG+ A+YDAL RMAQ +S+R +++GQGNFGS+ Sbjct: 57 DNLGVGSRSAYMKSARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ LL D+ KDTVDF PNYD EP VL +R PN+L+NG Sbjct: 117 DGDSAAAMRYTEARMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+L E++DG + +++N + L+ +ME I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIFGKKGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV++K+I I+++R Sbjct: 237 YRTGRGRVKLRAKTHIEK-KPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S + AR LM + Sbjct: 356 FLNHRKTVIIRRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q AIL++RL++LTGL R+ + EL L Sbjct: 416 --------------------------FNLSELQANAILDMRLSKLTGLEREKLEAELAEL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +IL S + L +IK+ELL +K++ PR T IV+ D++ ED I E+MVV Sbjct: 450 MAEIARLDEILKSETLLENLIKEELLEIKNKFKVPRVTEIVDDYDDIDIEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++ L E+I I+P + + + + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFD---ESKSLAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695 LS+F I G A+ LD DE+++ +D Sbjct: 627 NLSEFKNIRSVGVRAISLDENDELVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNE 686 Query: 696 -------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQV 735 + + TK G C++F IS +R GR + GV GI + GD+V Sbjct: 687 IDEDSANAEEDTNSGDETMLFVVTKKGMCLKFKISKVRQM-GRTARGVTGIKFKEPGDEV 745 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + A++ D Sbjct: 746 VGAAVIESND-------------------------------------------------- 755 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 Q IL++S+KG GKRT++ ++R++NR GKG+ ++ G LV V V++ ++ Sbjct: 756 --QEILSISQKGIGKRTTADEYRLTNRGGKGVICMKLTSR--TGDLVGVVMVDEEQDLMA 811 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++ G +IRV + IR A R T GV++ + D+ VS+ R +++ ++ + Sbjct: 812 LTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIARCPKADDGEDEDEA 864 >gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074] gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074] gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074] Length = 875 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 349/929 (37%), Positives = 498/929 (53%), Gaps = 103/929 (11%) Query: 1 MTEHIISSDEEEE---------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51 M + S E E + V + EMQ SYL YA++VI+ RA+PD+RDGLKP Sbjct: 1 MADENNPSTPEIEIDAEGLPLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKP 60 Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 VHRR+L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L+ Sbjct: 61 VHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLV 120 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 + GNFGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG +EP VL AR+ Sbjct: 121 DSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARF 180 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPT 227 PN+L+NG GIAVGMATNIP HNL EV G ++NP+ D LDAL+E I+GPDFPT Sbjct: 181 PNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEADPDTLLDALIERIKGPDFPT 240 Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287 GA+++GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+L Sbjct: 241 GALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADL 299 Query: 288 VREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346 V++ RI IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL Sbjct: 300 VKDARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD 359 Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406 P +L ++ +VA + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR Sbjct: 360 GVPRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRA 419 Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466 S + AR LM+ + + E+Q AILE++L RL Sbjct: 420 SQTVDVARGGLME--------------------------LLEIDEIQANAILEMQLRRLA 453 Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526 L R I E + L +I E IL+S R II +EL ++ D+ RR+ +V D Sbjct: 454 ALERQKIVAEHDDLQAKIDEYNAILASPERQRQIISEELAAIVDKFGEDRRSALVPFDGD 513 Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 M ED I ED+VVT++ GYVKR YR+Q+RGGKG G ++++D V F+ +TH Sbjct: 514 MSIEDLIAEEDIVVTITRGGYVKRTKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTH 573 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646 +LFF++ G VY+ K + LP ARG+ + N+L+ E I I+ + + Sbjct: 574 HWLLFFTNKGRVYRAKAYELPDVGRDARGQHVANLLAFQPDESIAQILAIRDYD---AAP 630 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+V TK G V++ L D Sbjct: 631 YLVLGTKGGLVKKTP----------------LKDYDSPR--------------------- 653 Query: 707 RFPISAIRVFAGRNSVGVRGISLAK-----GDQVISMAIVLHADADYDERICYMKHMSAQ 761 S GV I+L + D++I +V AD D + + Sbjct: 654 --------------SGGVIAINLRETPDGSDDELIGAELVS-ADDDLLLISKKAQSIRFT 698 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 S + E + F+ T ++ G+ KRT ++R+ Sbjct: 699 ATDESLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTGVDEYRVQG 758 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+A + + + G LV V + D+I+ ++ G +IR VNEIR R T GV Sbjct: 759 RGGLGIKAAKIVE--DRGELVGALVVEETDEILAITLGGGVIRTRVNEIRETGRDTMGVQ 816 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 + + K + VV + R E+ E + Sbjct: 817 LINLGKRDAVVGIARNAEAGREAEEVDGD 845 Score = 79.5 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 14/254 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593 +V + G VK+ PL Y + R GG + + +L +L S Sbjct: 630 PYLVLGTKGGLVKKTPLKDYDSPRSGGVIAINLRETPDGSDDELIGAELVSADDDLLLIS 689 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + + P R + + +S +G+ + ++ +V AT Sbjct: 690 KKAQSIRFTATDESL-RPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 742 Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R G A K+ E++ + ++IL T G +R + Sbjct: 743 GGYAKRTGVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDEILAITLGGGVIRTRV 802 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + IR GR+++GV+ I+L K D V+ +A A + +E + A SG Sbjct: 803 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDLPADGADGEAASGTDG 861 Query: 771 EITSLKNDSSVEGN 784 + S + Sbjct: 862 DTQSPAEGTEPSAE 875 >gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1] gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1] Length = 804 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 343/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K A Sbjct: 5 LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E +++V+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ Sbjct: 245 VEDGKR-VKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + S +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR + Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++D V + + S LF ++LG Y K ++L R Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 G+ + L+L E+I + D + +V TK G ++R L +F G Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+K++ DEI+S E + +++ TK+G +RFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ ++ + Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV+EKGFGKRT +RI R G G+R S +N+ G +VAV V +++ Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR PV+EI + R TKGV + D+ + V +++ Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ + +E L V +E+ ++ + G P+++ R R Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L + D+V + + + + ++ +L + G + ++ Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L ++ V++ G KRT+ +F SNR G+RA + Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641 Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ VN + ++V + G IR PV+++R R GV + VVSV+ I Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701 Query: 899 ESEIVDEAESTE 910 E + TE Sbjct: 702 PGEEGEILTVTE 713 >gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 341/900 (37%), Positives = 490/900 (54%), Gaps = 94/900 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G + Sbjct: 37 PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS D AA+ Sbjct: 97 RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GIAVGMAT Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HN+ EV G +++P+ + L+E + GPDFPTGA ILGR GI+ Y TG Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303 RG I +R V ++E+ R +VVTE+PY N + KIAE+VR+ +I IAD+RDE S Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETS 335 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G + +V Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L + Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + +VQ +AIL+++L +L L I++E + L + Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542 I E IL S R +I +EL + + RRT I+ DM ED I E+MVV++ Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR + YR+Q RGGKG G +R +D V L VSTH +LFF++ G VY+ K Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIK 609 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + L A+G+ + N+L+ ERI I P + Y+V AT+ G V++ L Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 D+ +G IA+KL DE++S + ++D++L + GQ +RF + +R GR Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ D +++M +V Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ TV++ GF KRT ++R+ NR G GI+ + +++ G Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L V ++ ++++V G ++R V + R T GV+ K +R+V+V E Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ PL Y R G + +R+ D + +VS ++ S G Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + + + T+ + YV T G Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760 Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + ++ G KL E+ ++ ++L+ G+ VR ++ + Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR+++GV K D+++++ + + + T+ + Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879 Query: 774 SLKNDSSVEGNISEERCQE 792 + ++ + + + ++ Sbjct: 880 APEDALTQDAGEGADGGEQ 898 >gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] Length = 830 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 348/849 (40%), Positives = 526/849 (61%), Gaps = 35/849 (4%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E + + + I + I DEM+NSY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + Sbjct: 17 EPLDIKPTDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKE 76 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ ++K Y K AR+ G+V+GKYHPHG+ A+YD+L RM Q++SLR LI+GQGNFGS+DG Sbjct: 77 AGMTYDKAYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDG 136 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ + ++ +L D+ K+TV +RPNYDGS +EP VL AR PN+L+NG GI Sbjct: 137 DSAAAMRYTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGI 196 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HNLGEV+D + +I++P+ + +LMEI++GPDFPTG VILG GIK+AY Sbjct: 197 AVGMATNMAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAYE 256 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I IR V+ IE+ D+++IVV+E+PYQVNK+ ++E IA LVREK+IV I+DLRDE Sbjct: 257 TGRGPIKIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDE 316 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G RV IEL R + +VILNQLY++T +Q+ F + +AL P TL +L+ ++ Sbjct: 317 SDRDGIRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIYL 376 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R +V+++R+ + + KA ++AH+L GL IA+ ++DEV+ +IR S + A+ LM R Sbjct: 377 EHRIDVILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTR-- 434 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L EVQ +AIL++RL +LTGL R I +E L Sbjct: 435 ------------------------FGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVK 470 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I++ DI+ S R IIK+EL ++++ RRT I ++ EDED I E+++VT+ Sbjct: 471 LIEDLKDIIESDERKYSIIKEELHAIRERFADKRRTEITGSHVEFEDEDLIPVEEVIVTI 530 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 ++ GY+KR+P+ Y Q RGGKG G+ +++D V D+FI STH ++FF++ G V+ +K Sbjct: 531 TNSGYIKRMPVDTYSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKK 590 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ LP GS Q++GKA++N+L L + E +T + E E + ++ AT+ G V++ L Sbjct: 591 VYGLPEGSRQSKGKAVVNLLDLAENESVTATITVKEFE---EDKFLFMATRMGTVKKTPL 647 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF + ++G IA+KLD DE+++V +I++ ++ G+ +RF +R GR + Sbjct: 648 SDFSNVRKAGIIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPM-GRTAR 706 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L D V+S+ IV + + + +S+ Sbjct: 707 GVRGMRLTGDDIVVSLDIVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLR 766 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +E ++ S +G R D R R+ +G++ +V ++ +V Sbjct: 767 NGPVINVKAV--KEEDEVMVTSSEGIFIRIPVKDIRAQGRNTQGVKIMNVRPGDK---VV 821 Query: 843 AVFPVNDND 851 V + + + Sbjct: 822 GVARIKNEE 830 >gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 94/900 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G + Sbjct: 37 PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS D AA+ Sbjct: 97 RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GIAVGMAT Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HN+ EV G +++P+ + L+E + GPDFPTGA ILGR GI+ Y TG Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303 RG I +R V ++E+ R +VVTE+PY N + KIAE+VR+ +I IAD+RDE S Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETS 335 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G + +V Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L + Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + +VQ +AIL+++L +L L I++E + L + Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542 I E IL S R +I +EL + + RRT I+ DM ED I E+MVV++ Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR + YR+Q RGGKG G +R +D V VSTH +LFF++ G VY+ K Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIK 609 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + L A+G+ + N+L+ ERI I P + Y+V AT+ G V++ L Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 D+ +G IA+KL DE++S + ++D++L + GQ +RF + +R GR Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ D +++M +V Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ TV++ GF KRT ++R+ NR G GI+ + +++ G Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L V ++ ++++V G ++R V + R T GV+ K +R+V+V E Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ PL Y R G + +R+ D + +VS ++ S G Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + + + T+ + YV T G Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760 Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + ++ G KL E+ ++ ++L+ G+ VR ++ + Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR+++GV K D+++++ + + + T+ + Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879 Query: 774 SLKNDSSVEGNISEERCQE 792 + ++ + + + ++ Sbjct: 880 APEDALTQDAGEGADGGEQ 898 >gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000] gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000] Length = 832 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 333/890 (37%), Positives = 495/890 (55%), Gaps = 88/890 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGSVD DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+P H Sbjct: 145 RMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM I+GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312 IE+T DRE IVV E+PY V K + EKIAELV++ +I +AD+RDES + G R++I Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L+ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLWKHTDLEITFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N E AR LM + Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSK------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL ++ ++ RR+ I ++++ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKNIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P + Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK++ IL+L E+IT+ + + ++ TK G +++ +L + Sbjct: 599 KTSQGKSIKFILNLAPDEKITSYFTVSDFNPKQS---IIMVTKMGTIKKMELKHLENAKK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ L++ DE++ V +D ++TT G +R +R GR + GV+GI+L Sbjct: 656 RGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNM-GRAAAGVKGITLD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D +S + ++ Sbjct: 715 DNDICVSGNGIHKGES-------------------------------------------- 730 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++E G GKR SS F R GKG N+ G +V+V V D Sbjct: 731 ---------LIVITENGIGKRLSSKQFNAKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D+I++V+ I++ + I R KGV I + + +V + + Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGAKVSDLAVVPAD 829 >gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201] gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201] Length = 880 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 343/918 (37%), Positives = 509/918 (55%), Gaps = 98/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + E + + + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MVEDV----EVTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + + KCAR+ G+VMG YHPHG++AIYDAL R+ Q+W++R L GQGNFGS Sbjct: 57 YDGGYRPERSFNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSP 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE ++ A ++ D+ +DTVDF+ NYDG QEP VL +R+PN+LVNG Sbjct: 117 GNDGAAAPRYTETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSA 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV DG + NPD+D L+ L++ ++GPDFP+GA ILG G Sbjct: 177 GIAVGMATNIPPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQILGHKG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSI R V +E+ +R +VVTE+PYQVN + KIA+LV++ ++ I Sbjct: 237 IEQAYRTGRGSITQRAVVSVEEI-HNRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A V+LN LY++T LQ FS NM+AL P +L Sbjct: 296 ADMRDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 + +V+ + +V+VRRT+Y L +A++ AH+L+GL A+ LDEV+ +IR SP E AR Sbjct: 356 AFVHHWVSHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARN 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E Q +AIL ++L RL L R I++ Sbjct: 416 GLME--------------------------LLGIDEAQAQAILNMQLRRLAALERQKIQD 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIV 534 L I E +I++S +R GII +EL + + RRT ++ D+ ED I Sbjct: 450 RHAELQRLIAEYEEIIASEARQRGIISEELAEIVERYGDDRRTEVLYGFDGDVSMEDLIP 509 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 ++ +VVT++ GYVKR YRAQ RGG+G G +R +D V F+ +TH +LFF++ Sbjct: 510 QQQVVVTITRDGYVKRTRADEYRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTT 569 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 LG VY+ K + A+G+ + N++ ERI +M + Y+V AT++ Sbjct: 570 LGRVYRVKAYEFVEAGRDAKGQHVANLMEFQPEERIAKVMELHSY---QDAPYLVLATRN 626 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712 G V++++L+D+ +G IA+ L DE++S ++DI+L ++ GQ +RF Sbjct: 627 GLVKKSRLTDYDTNRSAGVIAINLRDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDA 686 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV G+ GD+++S +V Sbjct: 687 LRPM-GRATSGVTGMKFRSGDELLSANVVSD----------------------------- 716 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + V+E G+ KRT+ ++R+ R G GI+ + Sbjct: 717 ------------------------DSHVFVVTEGGYAKRTAVQEYRVQGRGGLGIKVAKL 752 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 +++ V +ND++++V + G ++R V+E+ R T GV+ ++ +V Sbjct: 753 AEVRGGLV--GGLIVGENDEVLVVMESGKVVRSTVSEVPARGRDTMGVIFAKPGPNDTIV 810 Query: 893 SVERIRESEIVDEAESTE 910 V R E EI E + Sbjct: 811 GVARNAEREIEKEVAEED 828 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 104/281 (37%), Gaps = 19/281 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 +V + G VK+ L+ Y R G + +RD+D + +V T ++ Sbjct: 612 HSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAG--VIAINLRDDDELVSAMLVDTDDDIM 669 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R + + + G+ + + ++ +V Sbjct: 670 LISRHGQSLRFTADDDAL-RPMGRATSGVTGMKFRSGDELLSANVVS------DDSHVFV 722 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCV 706 T+ G +R + ++ ++ G + +K+ E+ + +++L+ + G+ V Sbjct: 723 VTEGGYAKRTAVQEY-RVQGRGGLGIKVAKLAEVRGGLVGGLIVGENDEVLVVMESGKVV 781 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R +S + GR+++GV D ++ +A +A+ + + +A Sbjct: 782 RSTVSEV-PARGRDTMGVIFAKPGPNDTIVGVA----RNAEREIEKEVAEEDAADATGPG 836 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 G T + D SV ++ + L ++ G Sbjct: 837 GVVVAETDVAADGSVPEAEEQDGPASDAQNDAVALEDNDNG 877 >gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] Length = 898 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 94/900 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G + Sbjct: 37 PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS D AA+ Sbjct: 97 RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GIAVGMAT Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HN+ EV G +++P+ + L+E + GPDFPTGA ILGR GI+ Y TG Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303 RG I +R V ++E+ R +VVTE+PY N + KIAE+VR+ +I IAD+RDE S Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETS 335 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G + +V Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L + Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + +VQ +AIL+++L +L L I++E + L + Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542 I E IL S R +I +EL + + RRT I+ DM ED I E+MVV++ Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR + YR+Q RGGKG G +R +D V VSTH +LFF++ G VY+ K Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIK 609 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + L A+G+ + N+L+ ERI I P + Y+V AT+ G V++ L Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 D+ +G IA+KL DE++S + ++D++L + GQ +RF + +R GR Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV G+ D +++M +V Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ TV++ GF KRT ++R+ NR G GI+ + +++ G Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L V ++ ++++V G ++R V + R T GV+ K +R+V+V E Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + G VK+ PL Y R G + +R+ D + +VS ++ S G Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + P R + + + + + T+ + YV T G Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760 Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R + ++ G KL E+ ++ ++L+ G+ VR ++ + Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR+++GV K D+++++ + + + T+ + Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879 Query: 774 SLKNDSSVEGNISEERCQE 792 + ++ + + + ++ Sbjct: 880 APEDALTQDAGEGADGGEQ 898 >gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411] gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411] Length = 812 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 360/892 (40%), Positives = 524/892 (58%), Gaps = 89/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +K I V I D MQ SYL Y+++VI+GRAIPD RDGLKPVHRRIL+ M ++ +E NK Y Sbjct: 6 SDKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+YDAL RM+QD+S+R LI+GQGNFGS+DGD PAA RYT Sbjct: 66 KKSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L DL K++VDF PNYD S +EP VL PN+L+NG GIAVG AT IP Sbjct: 126 EVRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIP 185 Query: 192 THNLGEVVDGCVA-VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 +NL E++D C+A + + +I D ++ I+GPDFPTG + IK AY G G I + Sbjct: 186 PNNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKSIKEAYKKGIGKITL 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R EK +R+ +VV EIPYQVNKA +L+ IA+LV++K++ IADLRDES+++G R+ Sbjct: 246 RAKVKEEKIK-NRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+K+ VILN+L++YT+LQ+ F VNM+AL G P + + FV R +VV Sbjct: 305 VIEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVK 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT +LL+KA+DRAH+L GL I + N+DEVV II+ S + + AR L +R Sbjct: 365 RRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKER---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ QT+AIL+++LARL L + + +E N + +I+ I Sbjct: 415 ----------------FKLSDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L RS L G+IK EL+ VK R+T+I++ ++D+ ED I E +++T S GYVK Sbjct: 459 LKDRSVLKGVIKDELVYVKQTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKA 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPL VY Q RGGKGR D D++TD+F+ ++ ++L F++LG VY K + +P S Sbjct: 519 VPLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQS 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P A+G+ ++NIL+L E + TI+P + FAT G V+R+ F I Sbjct: 579 PSAKGRPIVNILNLQPQEFVKTIVPIS------EADSLFFATAAGTVKRSSFRHFENIPS 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA++L+ +D ++SV + + +++++TT+ G CVRF ++R GR + GVRGI+L+ Sbjct: 633 NGKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSVRDM-GRAAAGVRGINLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+S Sbjct: 692 EGDSVVSA---------------------------------------------------F 700 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + K ++ VS+ G GK D R NR KG+R + + ++ + D Sbjct: 701 NFNQDKHTKLIVVSQTGLGKLLRVSDIRKVNRGAKGVRCIKLKE---NDSVAGSLSLKDT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +I+V+ G +I++ + I + SRA +GV + + + + VVS+ + Sbjct: 758 GDVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSIVVAGSEDE 809 Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 112/354 (31%), Gaps = 77/354 (21%) Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + N+ + + + P + + + V + V+R + Sbjct: 319 NKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVKRRTSFLLSKAKDRA 378 Query: 673 KIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 I + LD+ DE++++ +Q + RF +S R + + + Sbjct: 379 HILEGLLITLDNIDEVVAIIKSSQSTQ---EARSRLKERFKLSD------RQTQAILDMK 429 Query: 729 LA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 LA + ++I VL Y+ + + + ++ + + + + Sbjct: 430 LARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQTYADERKTQIL 489 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG---------------- 826 +I + +++ EQ I+T S+KG+ K + +R GKG Sbjct: 490 DSIVDIGIEDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGRMAATFSDNDYITDIF 549 Query: 827 -------------------IRATDVSKINEIGA---------------LVAVFPVNDNDQ 852 ++A ++ K + + + P+++ D Sbjct: 550 LTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQPQEFVKTIVPISEADS 609 Query: 853 IILVSDKGTLIRVPV---NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + + GT+ R I + + + +VSV + E + V Sbjct: 610 LFFATAAGTVKRSSFRHFENIPSNGKIA-----IRLNEQDSLVSVFSVAEGDEV 658 >gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 827 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 330/896 (36%), Positives = 509/896 (56%), Gaps = 93/896 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+NSY+ YA++VI+ RAIPD+RDGLKPV RR+L+ + +GV + Sbjct: 2 EPNIFDKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 KK KCA I GE MGKYHPHG+++IY AL M Q WS+R +LI+ QGNFGS DGD PAA Sbjct: 62 KKTKKCATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ + A +L + KDTVDF PN+ ++EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEAKMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HNL EV+D +I + + +LD +++ I+GPDFPTGA+ILGR GI+ AY +G Sbjct: 182 NIPPHNLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALILGRRGIEEAYRSG 241 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RG I +R V IE + +I+V E+PY V ++ ++EK+AELV++K+I I + D + Sbjct: 242 RGKIKMRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAG 301 Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 + ++ IEL++ A+ +VILNQLY++T LQ F V M+ + +P L +L F+ Sbjct: 302 KGSSAKINIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGEPRILNLQEMLNEFLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + VV RRT+Y LNK +RAH+L GL A+ ++DE+VRIIR + E A+++L+ R Sbjct: 362 HQINVVTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIAR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 S+ Q +AI+++RL LTGL R +++E L Sbjct: 419 -----------------------FAFSDAQAQAIVDMRLRALTGLERGRLQSEYEELLRR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I +ILS + LL +I++EL +K++ RRT+ ++DED I +D+V++ + Sbjct: 456 IARYREILSDQRELLSVIREELTQLKEKFGEKRRTQFA-FDDALDDEDLIPDDDIVISST 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ +R Q RGGKG G+ D D + DLF+ + H ++ F++ G ++ K Sbjct: 515 RLGYIKRMSPENFRQQNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKG 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S +RG AL+N+L L ER+ + + Y+V ATK G V++ LS Sbjct: 575 YEIPEASRTSRGTALVNLLKLQPEERVNACFSLRDLS---SEQYLVLATKSGLVKKTPLS 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + ++G IAM + D+++ + +I+L TK G +RF IR GR+++G Sbjct: 632 QYANVRKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRS-TGRSAMG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L GD++I M + Sbjct: 691 VRGIRLDSGDELIGMQKLSQGG-------------------------------------- 712 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L VSEKG+GK T++ +F+ NR GKG+ +++ + G LV Sbjct: 713 ---------------YLLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITE--KTGDLVG 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVV-SVERI 897 + + +I+L++ +G LIR+ + ++ + R T GV + V+ S+ ++ Sbjct: 756 FKLCDQDREIMLITSEGILIRMSLEKVSVIGRNTSGVKFMDLPKNGDTVIASIAKV 811 >gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8] gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II subunit A gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8] Length = 804 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 343/887 (38%), Positives = 529/887 (59%), Gaps = 90/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K A Sbjct: 5 LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + A+ +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR + Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y + RAHV+ GL A + VV I+R S + E+AR+ LM+ Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K + PRRT + + ++ +E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++D V + + +S LF ++LG Y K ++L R Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 G+ + L+L E+I + +V ATK G ++R L +F G Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+K++ DEI+S E + +++ TK+G +RFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ ++ + Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV+EKGFGKRT +RI R G G+R S +N+ G +VAV V +++ Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR PV+EI + R TKGV + D+ + V +++ Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 15/252 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ ++ +E L V +E+ ++ + G P+++ R R Sbjct: 473 QQYGDPRRTEVTDQSIEYNEEELIV----EEDVVITLSHKGYLKSTPLNSYRSQK-RGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L++ D+V + + + + ++ +L + G + ++ Sbjct: 528 GITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L + + ++ ++ G KRT+ +F SNR G+RA + Sbjct: 588 EDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641 Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ VN + ++V + G IR PV+++R R GV + VVSV+ I Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701 Query: 899 ESEIVDEAESTE 910 E + TE Sbjct: 702 PGEEGEILTVTE 713 >gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64] gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64] Length = 926 Score = 788 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 358/896 (39%), Positives = 531/896 (59%), Gaps = 84/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + GI V + EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ + Sbjct: 75 DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 134 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R L++G GNFGS+DGD AA R Sbjct: 135 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 194 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD S +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 195 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 254 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D +A+ +NP+ID+ LME + GPDFPTGA+ILG GIK+AY TG+GSI Sbjct: 255 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIP 314 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR ++ IE+ S + +I+VTEIPY+V K A++EKIAELV++K+I IADLRDES R+G R Sbjct: 315 IRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIR 374 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+ + V+LN+LYR T+LQ ++VN VAL +P+ L L+ ++ +EEVV Sbjct: 375 IVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVV 434 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L KA+DR H+L GL IAV N+DEV+ II+ S A+ L +R Sbjct: 435 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR--------- 485 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E QT+AI+++RL RLTGL +++ E+ L EI+ Sbjct: 486 -----------------FNLTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEF 528 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ S L+ +I +EL +K++ + RRT+I + DED I + D+V+T S G+V Sbjct: 529 ILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDEDLIPQRDIVITTSAKGFV 588 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + D+D + + +THT +L FS+ VY+ + +P Sbjct: 589 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPE 648 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G A INI+ + + I+ ++ + Y+ ATK+G +++ +L+++ +I Sbjct: 649 LSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERI 708 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ T E+ ILL + V+F R + R + GV+GI+ Sbjct: 709 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 767 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L V S Sbjct: 768 LDSHQTVSS--------------------------------------------------- 776 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + ILT+ +KGFGK T FR+ R GKG++ + G +V VN Sbjct: 777 --TSTSQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSK---LAGDIVFARFVN 831 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D++++++ G IR +++I RA KGV I + K E + +VE I+ E D Sbjct: 832 PQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKTD 887 Score = 57.9 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 80/301 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------GRNSVGVRGISL 729 + +++ DE++++ ++ + + RF ++ + A GR + L Sbjct: 457 IAVENIDEVIAIIKKSKTD---GEAQANLAKRFNLTEKQTKAIVDMRLGRLTG------L 507 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 A + + MA + + + + + +E + K + + I Sbjct: 508 AIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTI 567 Query: 790 CQE-LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV---------------- 832 E L + ++T S KGF KR +++ R G GI Sbjct: 568 TDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHT 627 Query: 833 ------------------------------------SKINEIGA-LVAVFPVNDNDQ--- 852 S + G +V++ PV+ D+ Sbjct: 628 DLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHY 687 Query: 853 IILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + + G + + + E I + F+ + + ++ I + +++ A Sbjct: 688 LFTATKNGIIKKTRLTEYERINANGKYA-----FNLREGDELIRAMIITDEDLILLANDE 742 Query: 910 E 910 E Sbjct: 743 E 743 >gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] Length = 834 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 334/893 (37%), Positives = 499/893 (55%), Gaps = 88/893 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+P H Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM ++GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312 +E+T DRE IVV E+PY V K + EKIA+LV++ +I +AD+RDES + G R++I Sbjct: 265 LEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L++ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR LM R Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL + ++ RR+ I ++++ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P S Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALS 598 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK++ IL+L E+IT+ E + + ++ TK G +++ +L + Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ L++ DE+++V +D ++TT G +R IR GR + GV+GISL Sbjct: 656 RGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKM-GRAAAGVKGISLD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D +S + ++ Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++E G GKR SS F + R GKG N+ G +V+V V D Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D+I++V+ I++ + I R KGV I + + RV + + Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPADNEE 832 >gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 808 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 341/889 (38%), Positives = 506/889 (56%), Gaps = 86/889 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I +I DE+ NSY+ Y+++VI+GRAIPDLRDGLKPV RRILFGM ++G+ N+ + K Sbjct: 3 EEIIHKNIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI GEVMGK+HPHG+AAIYDAL RMAQ +S+R L+EGQGNFGS+D DPPAA RYTE Sbjct: 63 SARIVGEVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEA 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++ A LL D+ K+TV PN+DGS EP VL + PN+L+NG GIAVGM T+IP H Sbjct: 123 RMETLAEELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E++D +I +P+ + L+ I+GPDFPTG +I+ I + Y G+G I +R + Sbjct: 183 NLVEIIDAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDAASIPSIYQEGKGRITVRAI 242 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ SG QIVV+EIPY +KA ++E+I + R + I ++RDESD++G RVVIE Sbjct: 243 AEIEE-SGGSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372 LKRGA +V+LN L+++T LQ+ FSVNM+ ++ K P L IL+ F++ R V+ + Sbjct: 302 LKRGADPNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSK 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L +A RAH++ GL A ++D VV IIR S N E A + LM+ Sbjct: 362 TEYDLEQASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLME------------- 408 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 T+ +++ Q+ AIL++R+ +LTG+ + + NE L +I E IL+ Sbjct: 409 -------------TLEVTQEQSSAILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILA 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRV 551 S ++ GII EL +K + RRTRI G D ED I ED+V+ V+ GY+K Sbjct: 456 SDEKVYGIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKST 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL YR Q RGGKG GV DEDFV ++ + + + +S G Y + S Sbjct: 516 PLESYRKQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++GK L N + ++ E + ++ ++E +V T+ G +++ + F+ + S Sbjct: 576 DSKGKLLANYIKIDPDENVQAVLSTRKEE--VQGKQLVITTRSGKIKKTEFEAFLNVRIS 633 Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ L+ D ++ + +++ I+++TK G +RFP+ +R GR++ GV GI L Sbjct: 634 GIKAISLNEGDRVIDASLTSREDDTIIISTKNGMVIRFPLDQVRSM-GRSAAGVMGIRLK 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D+V+ IV D Sbjct: 693 KNDEVVGANIVASEDTR------------------------------------------- 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 F+LT +EKG GKRT ++R NR G G++ + +IG ++ VN + Sbjct: 710 --------FLLTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLE--KIGKVIGTLVVNSD 759 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D++IL + G IR+PV+++R R TKGV I ++ S+ + + Sbjct: 760 DEVILATKLGMSIRIPVSQVRPTGRVTKGVRIVDLKDNDIAASMAVVVD 808 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L + + + E+ +L+ TK G P+ + R GR GV G+ D V Sbjct: 483 IDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKSTPLESYR-KQGRGGKGVIGVRTGDEDFV 541 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +++ ++ + + + L + + Sbjct: 542 VNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTR 601 Query: 796 KEQ----FILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE+ ++ + G K+T F RIS GI+A +++ + + A Sbjct: 602 KEEVQGKQLVITTRSGKIKKTEFEAFLNVRIS-----GIKAISLNEGDRVID--ASLTSR 654 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++D II+ + G +IR P++++R R+ GV+ K++ VV + + Sbjct: 655 EDDTIIISTKNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASED 707 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 62/221 (28%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +V + K ++ + + GN ++ +++ E Sbjct: 442 DLVAKINEYRMILASDEKVYGIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDED 501 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-------------------------- 832 +L V++KG+ K T +R R GKG+ Sbjct: 502 IVLMVTKKGYIKSTPLESYRKQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGK 561 Query: 833 -----------SKINEIGALVAVFPVNDNDQ-----------------IILVSDKGTLIR 864 S + G L+A + D D+ +++ + G + + Sbjct: 562 AYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTRKEEVQGKQLVITTRSGKIKK 621 Query: 865 VPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +RI G+ S + +RV+ + Sbjct: 622 TEFEAFLNVRI-----SGIKAISLNEGDRVIDASLTSREDD 657 >gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] Length = 810 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 355/840 (42%), Positives = 523/840 (62%), Gaps = 32/840 (3%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + I V I++E++ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 3 DPGKILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A + G+V+ K+HPHG+AA+YDAL R+AQD+S R LL++G GNFGSVDGD AA RYT Sbjct: 63 KKSAWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A LL D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EARLSKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG + +ID+PD ++ LM+ I+GPDFPTGA+ILGR GI +AY TGRGSI++R Sbjct: 183 PHNLGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ SG + +IVVTEIPYQVNKA ++EKIAELVREKRI I DLRDESDR+G R+V Sbjct: 243 AATQIEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+R V+LN L+++T+LQ+ + V M+ L +P L +L+ ++ +E+V+ R Sbjct: 303 IELRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KA RAH+L GL IA+ ++D V+ +IR S E AR L+++ Sbjct: 363 RTTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQ----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 +LSE Q +AIL++RL RLTGL R I E L +IKE IL Sbjct: 412 ---------------FHLSEEQAQAILDMRLQRLTGLERQKIDEEYAELVEKIKELRAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++LG+I++ELL +K + RRTRI G ++EDED I E++ VT+SH GY+KR Sbjct: 457 ADEKKILGVIREELLDIKAKYGDERRTRITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQ 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S+Y++QRRGG+G + + ++EDFV LFI S+H +LFF++ G VY+ K + +P Sbjct: 517 PMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L+++QGE+I+ ++P + Y++ AT+ G +++ L +F I R Sbjct: 577 AAKGTPIVNLLNVDQGEKISAVVPIRS---TDGGQYLIMATREGTIKKTPLDEFENIRRG 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G +A+ L DE+++V +++L T+ G +RFP + +R GR + GV+ + L Sbjct: 634 GLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSM-GRGAAGVKAVDLQG 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD VI M +V + V Sbjct: 693 GDVVIDMDVVDPDGDVLVVTNRGFGKRTPI--TEYRHQSRGGKGIRTLHVTARTGSVVSL 750 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ ++ ++ ++ G R + + R+ +G++ + + E+ + V + + Sbjct: 751 KMVRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKVVCAGEGN 810 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 61/245 (24%) Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 V + G ++R +S + R G AM D + + + + +L T G+ Sbjct: 505 VTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVY 564 Query: 707 RFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R + GR + G V +++ +G+++ ++ + D Sbjct: 565 RLKAYEVPEL-GRAAKGTPIVNLLNVDQGEKISAVVPIRSTD------------------ 605 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 Q+++ + +G K+T +F R Sbjct: 606 --------------------------------GGQYLIMATREGTIKKTPLDEFENIRRG 633 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ A + + L+AV + + ++IL + G IR P ++R R GV Sbjct: 634 --GLVAISLRE---NDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSMGRGAAGVKAV 688 Query: 884 STAKD 888 Sbjct: 689 DLQGG 693 >gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810] gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810] Length = 943 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 101/900 (11%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 DE E IT + + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M G Sbjct: 61 PLDESEVDRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYR 120 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 ++ + KCA++ GEVMG YHPHG++AIYDA+ R+ Q WS+R LI GQGNFGS D A Sbjct: 121 PDRSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAA 180 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTEC++ A L+ D+ +DTVD + NYD + EP VL AR+PN+LVNG GIAVGM Sbjct: 181 APRYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGM 240 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYA 242 ATNIP HNL EV D ++ N + ++ I+GPDFP+GA I+G +GI++AY Sbjct: 241 ATNIPPHNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYR 300 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGSI R V E+ R +VVTE+PYQVN + KIAE+V+ +I IAD+ DE Sbjct: 301 TGRGSITQRAVVSTEEI-NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDE 359 Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 S R G R+VI LKR A A V+LN LY++T LQ FS NM+AL P ++ ++ + Sbjct: 360 TSGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREW 419 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + +V+VRRTK+ L KA ++ H+ G A+ LDEV+ +IR SP+ + AR LM Sbjct: 420 TKHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM--- 476 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + + E+Q AIL ++L RL L R I E + L Sbjct: 477 -----------------------DLLEIDEIQANAILAMQLRRLAALERQKIIEEHDRLQ 513 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I+E IL+ R I+ +EL + D RRT I+ DME ED I EDMVVT Sbjct: 514 ALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVT 573 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GYVKR YRAQ+RGGKG G +R++D V F +TH +LFF++ G VY+ Sbjct: 574 ITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRA 633 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + LP A+G+ + N+++ E I +++ E + ++V AT+ G V++ Sbjct: 634 KGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYE---DAQHLVLATESGLVKKTP 690 Query: 662 LSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712 + F G IA+ L D ++S +++ILL ++ GQ VRFP Sbjct: 691 MPAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDG 750 Query: 713 -IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GV G+ D +++M ++ Sbjct: 751 TLRP-TGRATSGVTGMKFRHQDTLLAMDVIRP---------------------------- 781 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + F++TV++ GF KRT+ ++R+ R G GIR Sbjct: 782 -------------------------DSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAK 816 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + ++ G LV V + D++++V ++G ++R V E+ R T GVV K +R+ Sbjct: 817 LP--DDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRI 874 >gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] Length = 875 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 350/846 (41%), Positives = 516/846 (60%), Gaps = 33/846 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV +N+ Sbjct: 3 ESSGENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++++Y+ + RMAQ WSLR L++GQGNFGSVDGD PAA R Sbjct: 63 AHKKSARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A LL DL KDTVDF+PN+D S EP VL A++PN+LVNG GIAVGMATN Sbjct: 123 YTEARLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGEVVDG +A IDN +I + LME ++ PDFPTG +I G G+++A TGRGSI+ Sbjct: 183 MAPHNLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIYGYNGVRSAMETGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + E + REQI+VTEIPY +NKAAM+E+IA L+ +K++ I+D+RDESDR+G R Sbjct: 243 MRSKAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V +LK+ A +++LN L++YT LQ+ F VN VAL +P L ++K +V R V+ Sbjct: 303 IVFDLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGRPVLLNLKDLIKHYVDHRIVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A RAH+L GL IA+ NLD V+ +IR + +PETA+ LM++ Sbjct: 363 TRRTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q RAIL++RL RLTGL R+ I E + I I + D Sbjct: 414 -----------------FELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ R IIK EL +K+ RRT+I + DED I E+M++T+S GY+K Sbjct: 457 ILANEYRKYEIIKTELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS YR Q RGG G GV +D DF LF + +L F+ G ++ KV+ +P G Sbjct: 517 RTPLSEYRTQTRGGVGSRGVKTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEG 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+ + N++SL G+ I +++ DE NN Y++ T+ G +++ L + + Sbjct: 577 SKTSKGRPIQNLISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSR 636 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ ++ D +L+V +NDI++ + G+ VRF +R GR + GVRGI Sbjct: 637 PRTNGIIAISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPM-GRTAAGVRGI 695 Query: 728 SLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +L D +VI M + DA + + ++ + Sbjct: 696 NLNDPDNKVIGMVCISREDAQLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGK 755 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +E+ +E ++ ++ G R S D R + R+ +G++ +S +EI ++ Sbjct: 756 LVAIREV-TEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSV--TRI 812 Query: 847 VNDNDQ 852 + D D+ Sbjct: 813 LKDPDE 818 >gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae] gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae] Length = 919 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 347/902 (38%), Positives = 532/902 (58%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+G GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I IADLRDES+R G R Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ LNKA DR H+L GL IAV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSAR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITN 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 IL++R L+ +I EL +K++ RRT I + + + DED I + D+V+T S GYV Sbjct: 523 ILANRDLLIDLIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D ++ + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + Q++G + INI+ + + ++ + ++ Y+ ATK G +++ LS+F I Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQII 702 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ + ILL + V+F + R + R + GV+GI+ Sbjct: 703 NINGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVKGIT 761 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA+ + IS + + Sbjct: 762 LAEDETCISASSSSEGE------------------------------------------- 778 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILT+ + GFGK T FR+ +R GKG+ + ++ G LV VN Sbjct: 779 ----------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ E+ Sbjct: 826 PHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDET 885 Query: 909 TE 910 E Sbjct: 886 IE 887 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 123/362 (33%), Gaps = 22/362 (6%) Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 K + ID Y G + ++ ++T ++ T D + + I+ Sbjct: 578 TKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRA 637 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +R + +K + E ++ M D + + T + LG Sbjct: 638 HEIPELNRQSKGTSFINIIPRLKVD--------EGEKVISMLAVDEYSDDKYLFTATKLG 689 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 +K+ LS ++ GK + DE L S + + Sbjct: 690 IIKKTSLSEFQIININGKRAFNLKEEDE-----LIRASIIDDDELILLANSKQRIVKFHS 744 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 +R + ++L + E SS ++ K+G + S F Sbjct: 745 NEFRALSRIATGVKGITLAEDE------TCISASSSSEGELILTIGKNGFGKITHHSLFR 798 Query: 667 QINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 ++R GK + ++S ++ ++IL+ T G +R PI I GR + GV Sbjct: 799 LVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINE-TGRATKGV 857 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I+L K +Q+ ++ IV + + + + + N+ ++E + Sbjct: 858 KLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFIDDIKNQTKEILLDKGDINEETIEID 917 Query: 785 IS 786 I Sbjct: 918 ID 919 >gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] Length = 818 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 347/839 (41%), Positives = 520/839 (61%), Gaps = 35/839 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRQGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D + + + + + Sbjct: 693 EGDKVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLL 752 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ I +++ G RTS + + RS +G++ + ++ +V V Sbjct: 753 TVKGDEDLMI--ITDTGVMIRTSVGNISQTGRSTQGVKVMRL---DQDAKIVTFTTVQP 806 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + +Q + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRNSQTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S +V D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + + E + ++ E + DE Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] Length = 818 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 348/841 (41%), Positives = 522/841 (62%), Gaps = 35/841 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ + EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQTEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 S R+ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 SKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRKGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D + + + + + Sbjct: 693 EGDKVVGASVVTDQDEVLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAGLL 752 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ +++ G RTS + + RS +G++ + ++ +V V + Sbjct: 753 TVKGDED--LMIITDTGVMIRTSVGNISQTGRSTQGVKVMRL---DQDAKIVTFTTVQPD 807 Query: 851 D 851 D Sbjct: 808 D 808 Score = 92.5 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRNSRTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S +V D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + + E + ++ E + DE Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] Length = 806 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 328/892 (36%), Positives = 516/892 (57%), Gaps = 93/892 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 + I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV NK + K AR Sbjct: 3 INRPIEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I GEVMGKYHPHG+AAIYD L R+AQDWS+R L+EGQGNFGSVD DPPAA RYTE RL Sbjct: 63 IVGEVMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLS 122 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K + LL+D+ K+T++ N+DGS +EP+VL +++PN+L NG GIAVGM TNIP HN+ Sbjct: 123 KISEELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNIS 182 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+VDG +A+I NP I ++ L+E I GPDFPTG I+GR GI+ Y TG+GS IRG H+ Sbjct: 183 ELVDGFLALIKNPQISIEELIEFIPGPDFPTGGEIIGRAGIREMYTTGKGSFTIRGKLHV 242 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ +++IV+TEIPY V+KA +++KI E E + I D+RDESD++G R+VIE+ Sbjct: 243 EEDKK-KKKIVITEIPYNVSKADLIKKIVEYA-ENSSLQIKDIRDESDKEGLRIVIEIPN 300 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKY 375 + D+I+N LY++T LQS F ++ ++ K P L ++ AFV R EVV +R ++ Sbjct: 301 NVNEDIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQF 360 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 + +AH+L GL A ++D ++ +IR S + +A +ELM+ Sbjct: 361 FYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELME---------------- 404 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E Q +AI++LRL RLT L + + N L ++K +++ Sbjct: 405 ----------MFDFTETQAKAIVDLRLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDE 454 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ I +EL +K + R++ I++ + + I +++V++++ GY+K + Sbjct: 455 KVYEKIIEELTYIKAQYGDSRKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMS 514 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS +R Q+RGGKG +G + ++D + ++ H LFF+S G VY +++ S Sbjct: 515 LSTFRTQKRGGKGVTGSSLMNDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRT 574 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ++GK + +++++ E+I T++ + F TK G V+R L DF IN G Sbjct: 575 SKGKHISKYINIDKDEKILTMLSVDNFVGE-----LFFVTKFGKVKRTSLKDFENINARG 629 Query: 673 KIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ D D ++SV + ++ IL+ TK G +RFPIS +R GR+++GV GI L+K Sbjct: 630 LRAINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTM-GRSAMGVTGIKLSK 688 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+S A++ + + Sbjct: 689 DDKVVSSALLSNDE---------------------------------------------- 702 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +ILTV+ G+GK T + +RI R+G GI+ S +++ G +V+V V N+ Sbjct: 703 ------NYILTVTSLGYGKLTETSQYRIQKRAGLGIKNI--SDVSKTGYVVSVSYVLGNE 754 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I++ + G I++ ++ +R R TKGV + + ++ +++ + I E V Sbjct: 755 DIMIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEEDV 806 >gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1] gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1] Length = 894 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 368/905 (40%), Positives = 552/905 (60%), Gaps = 28/905 (3%) Query: 4 HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63 + +E + S T+EM++SYL+Y ++ + RA+PD+RDG+KPVHRRI+F M + Sbjct: 6 TEVDHADEGVAAVKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAES 65 Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 ++K+VK A++ G+VMG+YHPHG+ AIYDA+ RM Q WSLR LI+ QGNFGS+D D Sbjct: 66 NFTADRKHVKSAKVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDND 125 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL++ A L+ DLG+ VDFRPNYD S +EPVVL AR+PN+LVNGG GIA Sbjct: 126 PPAAMRYTESRLERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIA 185 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP H+LGE ++ C+ + NP + LD +M ++ GPD PTG VI GR+GI+ A+AT Sbjct: 186 VGMATNIPPHHLGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFAT 245 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRG+I + GV+ +E+ R +IV+ ++PY V KA +EK+AELV EK+I I+D+RDE Sbjct: 246 GRGAIRVSGVASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDES 305 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361 SD+ G R+VI++++ A V+LN+L T + +VNM L+ +P ++ +L F Sbjct: 306 SDKAGIRIVIDVRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEF 365 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 V FR EVV RRT + L K R+ H +GL A +DE+V +IR S + + AR L+ Sbjct: 366 VDFRREVVRRRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALD 425 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ S + L+ + + T LS+ Q RAILE+RL+RLTGL RD I L Sbjct: 426 FDTSG--EFAQLLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELS 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540 +EI L+IL+ ++ L G++++EL +K RRT I + + DED + +D+VV Sbjct: 484 VEIGGHLEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVV 543 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GYVKR L Y +++ ED V + +T T +LFF++ G + Sbjct: 544 TVTAGGYVKRTDLPAYMGRQKA------ADEAVEDPVATTIVCTTKTPLLFFTNRGLAHA 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 E +LP +P RG+AL+N L L E + I+ P+D ++ L ++F T G +RRN Sbjct: 598 EVAHKLPEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 SDF ++N+ GK+A+KL+ + +++SV + E+D+ L ++ G C RF ++ +RV Sbjct: 658 DASDFARVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRV 717 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R+SVGV GISL + D+VIS++++ H +A ER Y+ +G + Sbjct: 718 MKSRDSVGVAGISLGRKDKVISVSVLRHFEATGTEREAYL----------AGGSARTKDE 767 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + +R ++ EQ IL+V+E GF KRTSS+ +RI+ R G+G+ A ++ Sbjct: 768 TTGEPATFELPSDRMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADR 827 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G LVA+ PV + D +++ +D G R E+ I +R T+G F+ + +VSV Sbjct: 828 --TGDLVALMPVEEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVV 885 Query: 896 RIRES 900 +I Sbjct: 886 KIAAE 890 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 20/258 (7%) Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G VRR + A++ + D + + ++ ++ T G R + + Sbjct: 500 DGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGGYVKR---TDL 556 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + + ++ IV + + + Sbjct: 557 PAYMGRQKAADEAV-----EDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNVR 611 Query: 774 SLKNDSSVEGNISEERCQELKLKEQ-------FILTVSEKGFGKRTSSYDFRISNRSGKG 826 + +E E + L + ++ V++ G +R + DF N+ GK Sbjct: 612 GRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGK- 670 Query: 827 IRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIF 883 A + N G LV+V V+ D + L S G R V ++R+ SR + GV Sbjct: 671 -VAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGI 729 Query: 884 STAKDERVVSVERIRESE 901 S + ++V+SV +R E Sbjct: 730 SLGRKDKVISVSVLRHFE 747 >gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776] gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776] Length = 938 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 342/911 (37%), Positives = 505/911 (55%), Gaps = 20/911 (2%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + I V+I EM+ SY+TYA++VI+ RA+PD RDGLKP RRIL M + + N Sbjct: 7 TPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNS 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 VKCA+I G+ G YHPHG+ +IY L R+AQ+W++R LI+ QGNFGS+ G PPAA R Sbjct: 67 GRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL A +LDDL +DTVD+ YD +EPVVL +R+PN+LVNG GIAVGMAT+ Sbjct: 127 YTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATS 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV + ++++P+ +D LME++ GPDFPTG +I GR GI+ Y TGR ++ Sbjct: 187 IPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIICGRYGIRQGYLTGRSTLT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR---- 305 +R + + + I VTEIPY + + EK+ +LVR+ +I I+ + D +DR Sbjct: 247 LRAKTRFLTEK-NTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTPA 305 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 + I LKR A +VILNQL++Y+ LQS FSV ++AL+G +P+ + ++ F+ R Sbjct: 306 WQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLALSGNRPKTMNIKELIGEFIRHR 365 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 V+ R+T++ L +AR R H + GL IA N+DEV++ IR S + A+ L ++ Sbjct: 366 ITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERLQAILVPSA 425 Query: 426 DIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + + G T LS QT AI+ ++L L L ++ +R E L + Sbjct: 426 MVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLIED 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV 542 I L +LS + + +I++E+ + D+ RRT I E D++ ED I E MVVT+ Sbjct: 486 IFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTL 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S GY+KR+P+ Y+AQ RGG+G G DED + DLFI STH +LFF+ G V+ +K Sbjct: 546 SQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ LP+ S ++G+AL+N+LSL +GE++ T + E N Y+V AT+ G V++ L Sbjct: 606 VYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFE---ENRYLVMATRAGIVKKTSL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + + G IA+ L D ++ + + DILL+T G +RF + R GRN+ Sbjct: 663 DAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAM-GRNTS 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L K D+VI M + A + + S E D V Sbjct: 722 GVRGIKLRKDDEVIGMVVADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGVVA 781 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E E E+ ++ S R G G+R V N G +V Sbjct: 782 DEEIAEALPEETDTEEAAGEEGDESSSSSRSYR---RQRRGGLGVRDIRVIPRN--GKVV 836 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900 + V + D +++V+ G + RV EI R T+GV + + +RV S+ RI Sbjct: 837 KILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASMARIPADLC 896 Query: 901 -EIVDEAESTE 910 E ++E E Sbjct: 897 QETIEEKLDIE 907 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 75/544 (13%), Positives = 160/544 (29%), Gaps = 51/544 (9%) Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL--------- 327 K + + R + A + QG R L + ++ QL Sbjct: 414 KERLQAILVPSAMVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQE 473 Query: 328 ----YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 ++ +F + + + K + ++ L+ Sbjct: 474 KLRGEHQRLIEDIFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKE 533 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 + + + + ++ + R A D + DL S++ Sbjct: 534 DLIPEEMMVVTLSQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTH---- 589 Query: 444 DGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 D ++ ++ + + +L L T GR + G ++ C++ + + Sbjct: 590 DWLLFFTDKGRVFWQKVYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEENRYLV 649 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDED--------CIVREDMVVTVSHLGYVKRVP 552 + VK + G++ + +D + ++ ++ + G R Sbjct: 650 MATRAGIVKKTSLDAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFS 709 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + RA R G G+ +R +D V + + ++L G+ + + Sbjct: 710 QADARAMGRNTSGVRGIKLRKDDEVIGMVVADPAMTLLTMCEKGYGKRTPFGFIESAPVV 769 Query: 613 ARGKALINIL--------SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + + +L + DESS ++ + G R+ Sbjct: 770 EDVIPGEDGVVADEEIAEALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVRDIRVI 829 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 +A+ + + +L+ T G+ R + I GRN+ GV Sbjct: 830 PRNGKVVKILAV--------------QEGDHVLIVTAGGKIQRVRAAEISEI-GRNTQGV 874 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 R I L +GD+V SMA + AQ I D + Sbjct: 875 RVIKLTEGDRVASMARIPADLCQETIEEKLDIEPKAQVEDIPADQANPPETSTLGDEQTT 934 Query: 785 ISEE 788 S E Sbjct: 935 DSGE 938 >gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] Length = 867 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 351/927 (37%), Positives = 514/927 (55%), Gaps = 103/927 (11%) Query: 1 MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ ++ + + I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ Sbjct: 1 MSDEQMTDVRHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G + + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG Sbjct: 61 AMYDGGYRPSSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 + PAA RYTEC++ A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234 GIAVGMAT IP HNL E+ G + +P+ + L+E II GPDFPTGA ILGR Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATILGR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI++AY TGRGSI R V +E+ R+ +VVTE+PYQVN + +KIA+LVR+ I Sbjct: 241 KGIEDAYRTGRGSITQRAVVSVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299 Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ FS NM+AL P + Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 + G ++ ++ + +V+VRRT++ L KA +R H+L G A+ LDEV+ +IR SP + A Sbjct: 360 IDGFIRHWITHQIDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LIDL+D + VQ AIL L+L RL L R I Sbjct: 420 RVG-------------LIDLLDVDA-------------VQADAILALQLRRLAALERQKI 453 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L + + DIL++ R II EL + D+ RRTRI+ +M ED I Sbjct: 454 MDEHAELKARVDDLNDILATPERQRAIISAELSEIVDKFGDERRTRILPFDGEMSMEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT++ G+ KR YR+Q+RGGKG G +RD+D V F+ +TH +LFF+ Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 +LG VY+ K + +P G A+G+ + N+L+ E I ++ E + Y+V ATK Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADYLVLATK 630 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708 G V++ LS + G IA+ L DE++S + + D++L ++ GQ VRF Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRF 690 Query: 709 PISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + +R GR++ GVRG+ D+++SM + Sbjct: 691 TATDEQLRSM-GRSTSGVRGMKFRGDDELLSMEVPHEGTD-------------------- 729 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +L V+E G+ KRT ++ +R G Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVEEYPTKSRGTLG 756 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 +R + ++E G LV V ++ ++++++ G L++V +++R +R T GV+ Sbjct: 757 VRVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814 Query: 887 KDERVVSVERIRE---SEIVDEAESTE 910 +R++++ R + E D+A + E Sbjct: 815 DGDRIIAITRNSDSAGEEDEDDASAAE 841 Score = 74.1 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 14/258 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588 D +V + G VK+ PLS+Y + R GG + ++ +L Sbjct: 618 TYEDADYLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKADELVSAQIIMADED 677 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 ++ S G + + R + + + + E + Sbjct: 678 LILVSRDGQAVRFTATDEQL-RSMGRSTSGVRGMKFRGDDE------LLSMEVPHEGTDL 730 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705 + T+ G +R + ++ +R DE + + D+++ T+ G+ Sbjct: 731 LIVTESGYAKRTPVEEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKL 790 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 V+ S +R RN++GV GD++I++ + + DE Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDDGDRIIAITRNSDSAGEEDEDDASAAEPPEAVGAP 849 Query: 766 SGDTEEITSLKNDSSVEG 783 G+ + E Sbjct: 850 GGEETSGAASDGAEDSEE 867 >gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] Length = 834 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 336/893 (37%), Positives = 500/893 (55%), Gaps = 88/893 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+PTH Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM I+GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312 IE+T DRE IVV E+PY V K + EKIAELV++ +I +AD+RDES + G R++I Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L++ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR LM R Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL + ++ RR+ I ++++ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKKIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P + Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK++ IL+L E+IT+ E + + ++ TK G +++ +L + Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ L++ DE+++V +D ++TT G +R IR GR + GV+GI+L Sbjct: 656 RGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKM-GRAAAGVKGIALD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D +S + ++ Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++E G GKR SS F + R GKG N+ G +V+V V D Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGKVVSVKTVGDK 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D+I++V+ I++ + I R KGV I + + RV + + Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPCDNEE 832 >gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] Length = 863 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 361/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] Length = 919 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 346/902 (38%), Positives = 532/902 (58%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+ GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I IADLRDES+R G R Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ LNKA+DR H+L GL IAV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITN 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 IL++R L+ +I EL +K++ RRT I + + + DED I + D+V+T S GYV Sbjct: 523 ILANRDLLIELIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D ++ + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + Q++G + INI+ + + ++ + ++ Y+ ATK G +++ LS+F I Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQII 702 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ + ILL + V+F + R + R + GV+GI+ Sbjct: 703 NINGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVKGIT 761 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA+ + IS + + Sbjct: 762 LAEDETCISASSSSEGE------------------------------------------- 778 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ILT+ + GFGK T FR+ +R GKG+ + ++ G LV VN Sbjct: 779 ----------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ E+ Sbjct: 826 PHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDET 885 Query: 909 TE 910 E Sbjct: 886 IE 887 Score = 70.2 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 123/362 (33%), Gaps = 22/362 (6%) Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 K + ID Y G + ++ ++T ++ T D + + I+ Sbjct: 578 TKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRA 637 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +R + +K + E ++ M D + + T + LG Sbjct: 638 HEIPELNRQSKGTSFINIIPRLKVD--------EGEKVISMLAVDEYSDDKYLFTATKLG 689 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 +K+ LS ++ GK + DE L S + + Sbjct: 690 IIKKTSLSEFQIININGKRAFNLKEEDE-----LIRASIIDDDELILLANSKQRIVKFHS 744 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 +R + ++L + E SS ++ K+G + S F Sbjct: 745 NEFRALSRIATGVKGITLAEDE------TCISASSSSEGELILTIGKNGFGKITHHSLFR 798 Query: 667 QINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 ++R GK + ++S ++ ++IL+ T G +R PI I GR + GV Sbjct: 799 LVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINE-TGRATKGV 857 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I+L K +Q+ ++ IV + + + + + N+ ++E + Sbjct: 858 KLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFIDDIKNQTKEILLDKGDINEETIEID 917 Query: 785 IS 786 I Sbjct: 918 ID 919 >gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2] gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2] Length = 862 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 370/918 (40%), Positives = 521/918 (56%), Gaps = 82/918 (8%) Query: 1 MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M+ S E + + I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL Sbjct: 1 MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M Q GV N + K + I GE MG YHPHG++AIYD LARMAQD+S+R L++GQGNF Sbjct: 61 YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GSVDGDPPAA RYTE R+ A LLDD+ KDTVDF+ NYD QEP VL + +PN+LVN Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GIAVGM+TNIP HNLGEVVD V +I+NPD + LME I+GPDFPTGA I+GR + Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDATVELIENPDATVADLMEHIKGPDFPTGANIVGRNAV 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 AY TGRG + +R + + G +IV+ E+PYQ NKA ++E+IA+ V E +I I Sbjct: 241 HKAYKTGRGRVRVRADYDVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIR 297 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D+RDESDR G RVVIELKRG A+V+ NQL L+S F V +AL +P+ TL Sbjct: 298 DIRDESDRDGIRVVIELKRGVMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKET 356 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L+ ++ R +VV RR++Y L +A DRAH+L G A+ N+D+VV IR S + + A+ L Sbjct: 357 LEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAAL 416 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + L T SE Q I+ ++L LT + +I E Sbjct: 417 RGEVEVEVGGEPL--------------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEY 462 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I+ IL +S L +I+ ELL +KDE RRT V ++ D I ED Sbjct: 463 EDVQATIERLETILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEED 522 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VV VS Y+KR+P+S +R Q RGGKG G +++ D V+ +F+ +TH +L F++ G Sbjct: 523 VVVVVSEDDYIKRMPVSRFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQ 582 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K +++P S ARGK+ +N+L + GE IT ++ + E Y+ T++G + Sbjct: 583 VYQLKAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDI--EGYLTMVTRNGYI 640 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R F I +G IA KLD DE++ VE E+D+++ T+ G +RF +R Sbjct: 641 KRTGTDRFQNILSTGIIATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAM- 699 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GVRGI L D V +A + Sbjct: 700 GRSARGVRGIKLEGDDVVAGVAAIDE---------------------------------- 725 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +ILTV+E G+GKRT +R +R+GKG+ ++ N Sbjct: 726 -----------------DHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN- 767 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G + A+ V + D ++++SD+G ++R PV +I R T GV++ + + V SV+ I Sbjct: 768 -GPVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVI 826 Query: 898 R-----ESEIVDEAESTE 910 E E +D+A+S E Sbjct: 827 PAAMTTEGEELDDADSVE 844 Score = 77.9 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 13/250 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D E + V+ GY+KR ++ G + + D + D+ + + ++ Sbjct: 623 DLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTG--IIATKLDEGDELVDVEVTGGESDLV 680 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + ARG + + L + + + ED SW ++ Sbjct: 681 IGTERGMSIRFDEDEVRAMGRSARG---VRGIKLEGDDVVAGVAAIDEDHHSW----ILT 733 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVR 707 T++G +R L + +R+GK + + + + V + + +++ + GQ +R Sbjct: 734 VTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSDEGQILR 793 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 P+ I GRN++GV + L +GD V S+ ++ A E + + + Sbjct: 794 TPVEDISTV-GRNTMGVIVMDLDEGDDVASVDVIPAAMTTEGEELDDADSVEEDAETDAK 852 Query: 768 DTEEITSLKN 777 + + Sbjct: 853 ADAKADADDE 862 >gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630] gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255] gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile] Length = 808 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] Length = 838 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 342/915 (37%), Positives = 549/915 (60%), Gaps = 88/915 (9%) Query: 1 MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M++ ++ +++ I ++I E++ S+L+YA++VI+ RA+PD++DGLKPV RRIL+ Sbjct: 1 MSKKNDLLKNEDSLVGKIKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM ++GV + Y K ARI G+VMGK+HPHG+++IY+A+ RMAQD++ R L++G GN G Sbjct: 61 GMNELGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA RYTE ++ K + LL ++ ++TVDF NYDGS +EPV L + +PN+LVNG Sbjct: 121 SIDGDNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP+HNL EV+D + IDN +ID + LM+ I+GPDFPTG ILG +G+K Sbjct: 181 STGIAVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEILGISGLK 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRG I +R + I + ++ I++ EIPYQ+ K +++EKIA LV+EK I I D Sbjct: 241 EAYETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITD 300 Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 LRDES+ +G R++IEL++ +ILN LY++T LQ+ F NM+AL P+ +L + Sbjct: 301 LRDESNNSRGMRIIIELRKDVEPKIILNNLYKHTQLQTSFCFNMIALVNGVPKIVSLKNM 360 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L+ F FR +V+ R+ K+ LNKA+ + H++ LAI + ++++V++II+ S + + A++ + Sbjct: 361 LEEFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNI 420 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M E+Q++AILE+ L ++T L + E Sbjct: 421 M--------------------------INYNFDEIQSKAILEMSLQKITNLEIKKVIKEE 454 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVRE 536 L ++I EC +I++S+++ I+K+ELL +K++ R++ I L +E+E I +E Sbjct: 455 EILKLKIYECENIINSQTKKEKILKKELLKIKNQFQDKRKSIISNEQYLTVENESLINKE 514 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +++TV++ GY+KR+ L Y+ Q RGGKG SG+ M++ DF+ + I STH LFF++ G Sbjct: 515 TILITVTNKGYIKRLNLDTYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKG 574 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 +Y+ K + +P+GS ++G L+N+L L + E +T++ + + Y+V TK G Sbjct: 575 KIYQLKGYEIPLGSRYSKGIPLVNLLPLEKNEFLTSLTSVKDFK--EEKNYLVLVTKKGL 632 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 ++RN L DF + R+GKIA L + DE+L V T + DI+L G+ +RF IR Sbjct: 633 IKRNSLKDFENVRRNGKIAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQ- 691 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR S GVRGI + +++I M +V Sbjct: 692 TGRKSSGVRGIKIKTEEEIIGMTVVDS--------------------------------- 718 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++Q IL ++EKG+GK T + ++R R GKG + ++ N Sbjct: 719 -------------------EKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRN 759 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVE 895 G LV + + N+++I+ SD G ++R+ +I + S+ T+G ++ S + ++V SV Sbjct: 760 --GKLVRLLTIYRNEELIIFSDHGKVVRIDTKQIPLTKSKVTQGNILISLEESDKVSSVA 817 Query: 896 RIRESEIVDEAESTE 910 I+++ I E + E Sbjct: 818 LIKKTLIKKEESNDE 832 >gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932] gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55] gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34] gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196] gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196] Length = 808 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] Length = 835 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 341/911 (37%), Positives = 543/911 (59%), Gaps = 90/911 (9%) Query: 1 MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 M++H ++E I V++++EM+ S+L+YA++VI+ RA+PD++DGLKPV R Sbjct: 1 MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M ++GV + Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R L++G Sbjct: 61 RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD AA RYTE ++ K A L+ ++ K+T+DF NYDG+ +EP+VL PN+ Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 L+NG GIAVGMAT IPTHNLGEV+DG + I+N DI +D LM+ I+GPDFPTG +LG Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 +K+AY TG+G+++++ SH+ + + I+VTEIPYQV K ++EKIA LV+ K + Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVLEER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I DLRDES R+G ++VIELKR A+A +ILN+LY+++ L+ F +NMVAL G P+ +L Sbjct: 300 GITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 IL+AF FR EV+ R+ + L KA R H++ L + +++ +++I+ S + + A+ Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQ 419 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 R+LMQ+ E+Q++AILE+ L RL+ + Sbjct: 420 RKLMQK--------------------------YNFDEIQSKAILEMSLQRLSNQETQKLI 453 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCI 533 E +L EI EC I+ S+ + I+++ELL +K + R+T + L+ EDED I Sbjct: 454 TEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ++ +++T+++ GY+K + + Y+ Q+RGG+G SG+ + +EDF+ L I STH LFF+ Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + +P+G Q++G L+N L + E +T+ + S + Y+ FATK Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQD--YLFFATK 631 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L ++ I++ G IA++L DE+L+V+ T +I+L + G + F + I Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKI 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + + RNS+GV G+ L + ++ A+ Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALFD------------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + KEQ IL ++E GFGK T+ +RI RSGKG + V+ Sbjct: 720 -------------------VDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVN 760 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892 ++ G L+ + V +D +I+ SDKG ++RV +++I + ++AT+G I + V Sbjct: 761 --DQKGRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818 Query: 893 SVERIRESEIV 903 SV +++ + Sbjct: 819 SVAVVKKEVLD 829 >gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] Length = 837 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 324/900 (36%), Positives = 517/900 (57%), Gaps = 75/900 (8%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + +T I+ E++NS++ YA++VI+ RAIPD+RDG KPVHRR+L+ MG+ + Sbjct: 12 ESLNKTKVTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHD 71 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K AR+ GEV+GKYHPHG+ A Y+ + RMAQD+S+R +L++G GNFGS+DGD AA Sbjct: 72 KPYKKSARLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAM 131 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L ++ K+TVDF NYDGS EP VL A +PN+L NG GIAVGMAT Sbjct: 132 RYTEARLSKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMAT 191 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++D + + N D ++ + ++++GPDFPT A I+G GI + + TGRGSI Sbjct: 192 NIPPHNLSEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIVGTDGINSYFETGRGSI 251 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + I + + QI++ EIPY VNK+ +++KI +LV+ + I IADLRDES R+G Sbjct: 252 TIRSKAEIIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+K+ +V+LN+L++ T LQS FSVNM+AL +P+ + +L+ ++ + V Sbjct: 312 RIVIEVKKDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKEPKLLNIKEVLQEYLKHQVNV 371 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 +VR+TK+ L KA +R H+L GL IAV N+D V++IIR S + + A ++L+ + Sbjct: 372 LVRKTKFELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITK-------- 423 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+++Q +AIL++RL L+ L R I EL + I+E Sbjct: 424 ------------------YKLTKIQAKAILDMRLRSLSNLERLKIEQELKEVKALIQELS 465 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 IL S + + II +EL+++K+ R+T I+ ++DED I E++V++ S Y Sbjct: 466 GILKSSDKQMDIISKELINLKNTYGDERKTEILYGVSASIDDEDLIPVENIVISRSANNY 525 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ + Y+ QRRGG G GV ++D V D+ +THT +LFF+ G VY+ + +P Sbjct: 526 LKRISIETYKIQRRGGVGVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIP 585 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 GS Q++G +N++++ + E+I ++P + + ++ AT G V+R LS++ Sbjct: 586 PGSRQSKGVPALNLMNIEKNEKILVMLPVEDY----SKGFLFLATTKGIVKRTSLSEYNS 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +GK A+ L D++LS +++I L G RF +RV GR + GV+GI Sbjct: 642 IKSNGKRAITLREGDQLLSAFLTRGKDEIYLGASNGLLTRFNEQDVRVM-GRTASGVKGI 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 ++ E+ + + Sbjct: 701 NI-----------------------------------------EVKAEGRNKKKIDTSIN 719 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L IL++ EKG GK + + ++R++ R KG+ + ++ G L+ V Sbjct: 720 VVGASSSLSGDLILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQN--DKTGKLIFSSAV 777 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +++I++V+ G +IR + +R+ R+T GV + E+++S ++ E +E E Sbjct: 778 KGDEEILIVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYKKEEDENEIE 837 >gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63] gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] Length = 808 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92] gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92] Length = 873 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 369/925 (39%), Positives = 542/925 (58%), Gaps = 135/925 (14%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+I++ +++ I V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENILNLNQD----IKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+ Sbjct: 57 NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL +R PN+L+NG Sbjct: 117 DGDSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P H+L E++DG + ++DN + L+ +M+ I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIFGKKGIMEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++R Sbjct: 237 YRTGRGRVKVRAKTHIEK-KPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A +D++LN L++ T+++S F V M+A++ +P+ FTLI +LK Sbjct: 296 DESDREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKEPKIFTLIELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++R+T + L KAR RAH+L GL IA+ N+DEV+ +IR S + +AR LM++ Sbjct: 356 FLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q+ AIL++RL++LTGL R+ + NEL L Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLDNELKEL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +IL S + L +IK ELL +K + PR T IV+ D++ ED I E+MVV Sbjct: 450 LAEISRLDEILKSETLLENLIKDELLEIKSKFKVPRLTEIVDDYDDIDIEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++ L E+I I+P + N + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTDFA---QNKSLAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695 LS+F I G A+ LD DE+++ ++ Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEHGDEGVQPENLIDELGVETEINEIETIES 686 Query: 696 --------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734 + + TK G C++F + +R GR + GV GI + GD+ Sbjct: 687 EIDEQSDENIDSIDDTDEKMLFIVTKKGMCLKFKLGKVRQM-GRTARGVTGIKFKEKGDE 745 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ A++ Sbjct: 746 VVGAAVIESNA------------------------------------------------- 756 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 Q IL++S+KG GKRT++ ++R++NR GKG+ ++ G L+ V V+D ++ Sbjct: 757 ---QEILSISQKGIGKRTTAEEYRLTNRGGKGVICMKLTTR--TGELIGVVMVDDEMDLM 811 Query: 855 LVSDKGTLIRVPVNEIRIASRATKG 879 ++ G +IRV + IR A R T G Sbjct: 812 ALTSSGKMIRVDMQSIRKAGRNTSG 836 >gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] Length = 870 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 352/909 (38%), Positives = 540/909 (59%), Gaps = 92/909 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E I+ E + + + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 29 EEIMKKTEMSNEEL--IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDE 86 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + N Y K AR+ GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS+DG Sbjct: 87 LKMNHNSPYKKSARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDG 146 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ K A +L D+ KDT+D+R N+D S EP VL AR PN+L+NG GI Sbjct: 147 DSAAAMRYTEARMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGI 206 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGE+ DG +A+IDN DI +D L+ I+GPDFPTG +I G++GI +AY Sbjct: 207 AVGMATNIPPHNLGELSDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYK 266 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + + + I R+ IV+TE+PYQVNKA ++++I ELV++K IV I+DL D Sbjct: 267 TGRGKVRVSAKTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADL 326 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+ +G R+VI++K+G A+++LN+L ++T LQ+ F + M+AL P+ L IL+ ++ Sbjct: 327 SNLEGIRIVIDIKKGEEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYL 386 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R +V+ R+T + LNKA+DRAH+L GL A+ ++DE++ IIR S A+ L+ + Sbjct: 387 EHRYDVITRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK-- 444 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +E+QT AIL++RL RLTGL R++I E + L + Sbjct: 445 ------------------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLML 480 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R IIK+E+L +K + RRT I ++ ED I ED++VT+ Sbjct: 481 FITDLEDILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTI 540 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR+ L Y+AQ+RGGKG S ++D + DLF T +++ FS G VY K Sbjct: 541 TKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIK 600 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P S QARGK + NI+ L++ E+I+ I+P DE +N ++F T++G ++ K+ Sbjct: 601 VYEIPEVSKQARGKLIGNIIELDENEKISVIIPV--DEIENDNRDLIFITRNGIAKKTKI 658 Query: 663 SDFIQINRSGKIAMKLDSR-DEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGR 719 S+F INR+GKIA+ DE+ V + +++I ++TK G VRF IR GR Sbjct: 659 SEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSM-GR 717 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVR I L D+V+S ++ Sbjct: 718 TAAGVRAIKLNSNDEVVSADVI-------------------------------------- 739 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-- 837 + + E +L+V+ G GK+T ++ I R GKG++ ++ + ++ Sbjct: 740 ----------YTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEE 789 Query: 838 --IGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 +V ++ +D +++ +S GT+IR+ + ++ + R +KGV I S E Sbjct: 790 SEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKE 849 Query: 890 RVVSVERIR 898 +VS +R+ Sbjct: 850 YLVSADRVA 858 Score = 121 bits (302), Expect = 9e-25, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 7/221 (3%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 E+ I+ TK G R + + + R GV + + D + + D Sbjct: 530 LIKNEDVIVTITKRGYAKRMSLDSYKAQK-RGGKGVSNTTTIEDDVLKDLFTAKTLDTLM 588 Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 ++ +K + I ++ E E++ + ++ ++ Sbjct: 589 VFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFIT 648 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G K+T +F+ NR+GK A + V + ++ D+I + + G +R Sbjct: 649 RNGIAKKTKISEFKTINRNGK--IAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVR 706 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +IR R GV ++ VVS + I VDE Sbjct: 707 FKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDE 747 >gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] Length = 914 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 363/908 (39%), Positives = 541/908 (59%), Gaps = 52/908 (5%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + S+ E + I + + + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 1 MQSNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+ ++GQGNFGS+DGD Sbjct: 61 GSRQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A LL DL K+TVDF PNYD S EP VL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E+V G + +++N + L+ +M I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + IR +HIEK ++ IV+ E+PYQ NKA ++E+IA+LV+EK+I I+++RDESDR Sbjct: 241 GRVKIRAKTHIEK-KASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDR 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELKR A ++++LN L++ T++++ F V M+A++G +P+ FTLI +LK F+ R Sbjct: 300 DGIRVVIELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S + AR LM R Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE Q+ AIL++RL+RLTGL R+ I EL + EIK Sbjct: 415 ---------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEIK 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL S + GIIK ELL +KD+ PR T IV+ D++ ED I E+MVVT++H Sbjct: 454 RLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKGR V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N++ L E+I I+P + + + +VF T++G V+R LS+F Sbjct: 574 IPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFD---PSKSLVFFTRNGIVKRTNLSEF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 I G A+ LD D +++ + + G + + + Sbjct: 631 KNIRSLGIRAISLDEDDTLVTALIAPNSAEEMQNYKGGALSGDDLDGGEAEEILEQTE-- 688 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 + I D++ D + + + + + ++ + Sbjct: 689 ---QDILEGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRI 745 Query: 782 EGNISEERCQELKLK----------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + + +E + Q IL+VS+KG GKRT++ ++R++NR GKG+ Sbjct: 746 ARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMK 805 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 ++ N G L+ V V++ ++ ++ G +IRV + IR A R T GV++ + + + V Sbjct: 806 LT--NRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNV-EGDDV 862 Query: 892 VSVERIRE 899 VS+ + Sbjct: 863 VSIATCPK 870 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 12/206 (5%) Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 + + G K + ++ ARG I + + Sbjct: 718 NENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKF-------KEKGDEVIGAAFILSD 770 Query: 645 NLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTK 701 ++ ++ G +R S++ G I MKL +R E++ V +E D++ T Sbjct: 771 MQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTT 830 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 G+ +R + +IR AGRN+ GV +++ +GD V+S+A A+ + + Sbjct: 831 SGKMIRVDMQSIR-KAGRNTSGVIVVNV-EGDDVVSIATCPKAEEGDEGEADELAQDENL 888 Query: 762 RRLISGDTEEITSLKNDSSVEGNISE 787 + + +D ++G E Sbjct: 889 LNSNLDSKDSQSDGPSDEILKGGEDE 914 >gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97] gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 862 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 361/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D+ L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ L+ DE+++ ++ D Sbjct: 631 QNIRSIGVRAINLNENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESA 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP+ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLVKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL+VS KG Sbjct: 747 -------------------------------------------------QEILSVSAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] Length = 818 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 346/839 (41%), Positives = 519/839 (61%), Gaps = 35/839 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRQGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D + + + + + Sbjct: 693 EGDRVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLL 752 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ I +++ G RT + + RS +G++ + ++ +V V Sbjct: 753 TVKGDEDLMI--ITDTGVMIRTGVANISQTGRSTQGVKVMRL---DQDAKIVTFTTVQP 806 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + +Q + + +F +S R S + + L Sbjct: 382 IALDHIDEVIRIIRNSQTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S +V D + + + + + + + G + Sbjct: 433 ERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR +F R G+G++ T V + + LV+ + Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 +D ++ ++KG + R+ EI R KG V + + E + ++ E + DE Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608 Query: 906 A 906 A Sbjct: 609 A 609 >gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] Length = 815 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 357/838 (42%), Positives = 517/838 (61%), Gaps = 32/838 (3%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y Sbjct: 7 QGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 67 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 127 VRMSKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNP+ ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 187 HNMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 247 RAHIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L IL +++ +E V+ RR Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITRR 366 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 413 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILA 460 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R ++L IIK EL+ V+D+ RRT I +M+ D I ED+VVT++ Y+KR+P Sbjct: 461 DRMKVLAIIKDELIEVRDKYGDERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIP 520 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G V+ K + +P Q Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQ 580 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A+IN+L++ ERIT ++ E + + ++ TK G V++ L++F I +SG Sbjct: 581 AKGTAIINLLAVEADERITAVIQVREFK---PDRFLFLGTKRGVVKKTPLAEFANIRKSG 637 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+LG+ + FP S +R GR + GVRGI LA G Sbjct: 638 LKAVNLDEEDELIGVKFTDGENRIMLGTRLGKAIAFPESGVRSM-GRVTRGVRGIMLADG 696 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M I+ +A + + + V Sbjct: 697 DEVVAMDILKSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLI--NMKVTEKTGPVVGIR 754 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + ++Q ++ ++ +G RTS + +R+ +G+R +++ + + ++ + + D Sbjct: 755 VVREDQELMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMATMNRIVDT 812 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 19/279 (6%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKL--DSRDEILSVET-- 689 + + + ++F T G V K + G + L DE ++ Sbjct: 545 VSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQV 604 Query: 690 --CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + + L TK G + P++ R S G++ ++L + D++I V D + Sbjct: 605 REFKPDRFLFLGTKRGVVKKTPLAEFANI--RKS-GLKAVNLDEEDELIG---VKFTDGE 658 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + + + + + + E ++ + +LTV+E G Sbjct: 659 NRIMLGTRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSEVLTVTEGG 718 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKRT++ ++R R GKG+ V++ + G +V + V ++ +++L++ +G +IR V Sbjct: 719 YGKRTAAGEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVREDQELMLITTEGIVIRTSV 776 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903 NEI SR T+GV + + A+++RV S+ RI ++ Sbjct: 777 NEISRISRNTQGVRLMTIAENDRVASMATMNRIVDTPSE 815 Score = 94.9 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%) Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 E+ + +E+ ++ T R P+ R R VGV+G+ + D V + Sbjct: 491 DASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDIVSDLL 549 Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 I + ++ + I+ Sbjct: 550 ITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQVREFKP 609 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++F+ +++G K+T +F +N G++A ++ + L+ V + ++I+L Sbjct: 610 DRFLFLGTKRGVVKKTPLAEF--ANIRKSGLKAVNLDE---EDELIGVKFTDGENRIMLG 664 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G I P + +R R T+GV A + VV+++ ++ V Sbjct: 665 TRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSEV 711 >gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 862 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 359/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ I++ E+PYQ NKA ++E+IAELV+E++I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1] gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327] Length = 863 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni] gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902] gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 863 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26] gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79] gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58] Length = 808 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42] Length = 808 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial [Vitis vinifera] Length = 911 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 349/917 (38%), Positives = 523/917 (57%), Gaps = 77/917 (8%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++ + + I + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G Sbjct: 55 VLKEKDGRDGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELG 114 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR LI+G GNFGSVD DP Sbjct: 115 LSSRKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADP 174 Query: 125 PAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL+ + L DL +DTVDF PN+D S +EP +L AR P +L+NG GIA Sbjct: 175 PAAMRYTECRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIA 234 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HN+GE+VD +I NP+ L L+E + GPDFPTG +I+G GI AY T Sbjct: 235 VGMATNIPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRT 294 Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG I++RG + +E + R +++ EIPYQ NK++++EKIAELV K + I+D+RD Sbjct: 295 GRGRIIVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRD 354 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G R+VIELKRG+ ++LN+LYR T+LQS FS NM+ + +P+ L +L+AF Sbjct: 355 ESDRSGMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAF 414 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR VV RR ++ L++A++R H++ G+ + + NLD V+R+I+ +P+ A Sbjct: 415 LDFRCSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA-------- 466 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + G LSE Q AIL++ L R+T L R+ E SL Sbjct: 467 ------------------STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLM 508 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVV 540 +I + ++LSSR ++L +I+QE + +K+ TPRR+ +ED D I E+M++ Sbjct: 509 EQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLL 568 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 VS GYVKR+ + + Q RG G+S +R D ++D + H VL+FS G V+ Sbjct: 569 AVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHS 628 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + +++P + A G L+ IL L+ GERIT+I+P E + +++ T +G +++ Sbjct: 629 ARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSEFA---EDQFLLMLTMNGYIKKV 685 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+ F I +G IA++L DE+ V CT ++ + + ++ G + IR GRN Sbjct: 686 SLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRN 744 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + G + L +GD++ SM I+ A Sbjct: 745 TRGSIAMRLKQGDKMASMDIIPAA--------------------------------IRKD 772 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E + + + + L ++L VSE G GKR FR+S + G+ S Sbjct: 773 LEKALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSA---EDH 829 Query: 841 LVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 L AVF V ++Q++LVS GT+ R+ V +I I SR +GV++ ++ Sbjct: 830 LAAVFVVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQ 889 Query: 893 SVERIRESEIVDEAEST 909 S + +E + E Sbjct: 890 SASLMSATETETDDEEA 906 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 67/283 (23%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693 + + N ++ ++ G V+R K + F GK KL D + C Sbjct: 555 LEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAH 614 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L + G I R + G V+ + L+ G+++ S+ V Sbjct: 615 DYVLYFSDRGIVHSARAYKIPECT-RTAAGTPLVQILCLSDGERITSIIPVSE------- 666 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 ++QF+L ++ G+ K Sbjct: 667 -------------------------------------------FAEDQFLLMLTMNGYIK 683 Query: 811 RTSS---YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 + S R + GI A + L V ++D + + S G +I Sbjct: 684 KVSLNFFSSIRST-----GIIAIQLVPG---DELKWVRCCTNDDLVAMASQNGMVILSSC 735 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR R T+G + + +++ S++ I + D ++ E Sbjct: 736 EIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALE 778 >gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 862 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++D+ D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] Length = 808 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LL +IK E+ +K+ RRT I +++ D I E++ +T++H GY+KR Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P G Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N+L L+ E+I T++P ++ N Y++ ATK G V++ K +F IN+ Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L DE++ VE + ++LL TK G +RF + IR GR ++GV+GI+L+ Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D V+SM + + S ++ Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ ++ I+ ++ G R + + R G++ N+ +V++ +N Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806 Query: 851 DQ 852 ++ Sbjct: 807 EE 808 >gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] Length = 826 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 348/841 (41%), Positives = 522/841 (62%), Gaps = 35/841 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+I+VTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDR--SDDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGTADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D + + + + + Sbjct: 700 EGDQVVGAGVIAEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLM 759 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ ++ ++ G RTS + + RS G++ + ++ +V V N Sbjct: 760 TVTG--EEDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRL---DQNAQIVTFTSVEAN 814 Query: 851 D 851 D Sbjct: 815 D 815 Score = 91.4 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 98/239 (41%), Gaps = 22/239 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++ + ++ + + +F +S R S + + L Sbjct: 389 IALDHIDEVIRIIRNSETD---AEAQAELMAKFELSE------RQSQAILDMRLRRLTGL 439 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + G + Sbjct: 440 ERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSL 499 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + ++T+S KG+ KR + +F R G+G++ T V + + LV+ + Sbjct: 500 EDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQGTGVKDDDFVKELVST---S 556 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +D+++ ++KG + R+ EI R KG V + + E + ++ +++ D Sbjct: 557 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGETIQTIINVQQDRSDD 615 >gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] Length = 835 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 342/911 (37%), Positives = 536/911 (58%), Gaps = 90/911 (9%) Query: 1 MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 M++ +DE I V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV R Sbjct: 1 MSDQKTQNDEANNHKDHDHGNIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M ++GV + Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R L++G Sbjct: 61 RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD AA RYTE ++ K A L+ ++ KDT+DF NYDG+ +EP+VL PN+ Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNL 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 L+NG GIAVGMAT IPTHNLGEV+DG + I+N DI +D LM+ I+GPDFPTG +LG Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 +K+AY TG+G+++++ SH+ K + I+VTEIPYQV K ++EKIA LV+ K + Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVSKER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 +I DLRDES R+G ++VIELKR A++ +ILN+LY+++ L+ F +NMVAL G P+ +L Sbjct: 300 EITDLRDESSRKGMKIVIELKRDANSKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 IL+AF FR EV+ R+ + L KA R H++ L + +++ +++I+ S + + A+ Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQ 419 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 +LMQR E+Q++AILE+ L RL + Sbjct: 420 SKLMQR--------------------------YNFDEIQSKAILEMSLQRLANQETQKLI 453 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCI 533 E +L EI EC I+ S+ + I+++ELL +K + R+T + L+ EDED I Sbjct: 454 TEEKNLTQEILECQSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + +++T+++ GY+K + + Y+ Q+RGG+G SG+ + +EDF+ L I STH LFF+ Sbjct: 514 EEKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + +P+G Q++G L+N L + E +T+ + S + Y+ FATK Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSVKNFDQSQD--YLFFATK 631 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L ++ I++ G IA++L DE+L+V T +I+L + G + F + I Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKI 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + + RNS+GV G+ L + ++ A+ Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALFD------------------------------- 719 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 KEQ IL ++E GFGK T+ +RI RSGKG + V+ Sbjct: 720 -------------------TDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVN 760 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892 ++ G L+ + V D +I+ SDKG ++RV +++I + ++AT+G I + V Sbjct: 761 --DQKGRLITLQVVLPTDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818 Query: 893 SVERIRESEIV 903 SV +++ + Sbjct: 819 SVAVVKKEVLD 829 >gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana] Length = 935 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 354/919 (38%), Positives = 522/919 (56%), Gaps = 77/919 (8%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + + D + + + E +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M + Sbjct: 77 DRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHE 136 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +G+ K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR LI G GNFGS+D Sbjct: 137 LGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDA 196 Query: 123 DPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DPPAA RYTECRL+ + L DL ++TVDF PN+D S +EP +L AR PN+L+NG G Sbjct: 197 DPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASG 256 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGE+VD A+I NP+ L L+E + GPDFPTG +I+G GI A+ Sbjct: 257 IAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAF 316 Query: 242 ATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 TGRG +VIRG + IE + R I++ EIPYQ NKA+++EKIA+LV K + ++D+ Sbjct: 317 RTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDI 376 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G R+VIELKRG+ ++LN LYR T+LQS FS NMV + +P+ L +L+ Sbjct: 377 RDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQ 436 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ FR VV RR ++ L++A++R H++ G+ + + NLDEV+ IR Sbjct: 437 AFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIR-------------- 482 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 ++ LSE Q AIL++ L RLT L R+ E S Sbjct: 483 ------------KASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKS 530 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDM 538 L +I + ++LSS+ ++L +I++E + +K++ PRR+ D+ED D I E+M Sbjct: 531 LRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEM 590 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 ++ +S GYVKR+ + Q RG G+S +R D ++D + H VL+FS G V Sbjct: 591 LLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTV 650 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y +++P S A G L+ ILSL+ GERIT+I+P E + Y+V T +G ++ Sbjct: 651 YSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFA---ADQYLVMLTVNGYIK 707 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L+ F I +G IA++L DE+ V+ C+ + + + ++ G + P + IR G Sbjct: 708 KVSLNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRAL-G 766 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ G + L +GD+V SM I+ A Sbjct: 767 RNTRGSVAMRLKEGDKVASMDIIPDA--------------------------------LQ 794 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++ + ++ Q +K ++L VSE G+GKR FR S + G+ S Sbjct: 795 KELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFS---SE 851 Query: 839 GALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 L AVF V ++Q++LVS GT+ R+ V +I I SR +GV++ + Sbjct: 852 DCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGK 911 Query: 891 VVSVERIRESEIVDEAEST 909 + S I ++ E E Sbjct: 912 IQSASLISAADADPEDEDA 930 Score = 96.0 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 61/280 (21%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693 + + N ++ ++ G V+R K F GK KL D + C Sbjct: 579 LEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAH 638 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L + G P I R + G V+ +SL+ G+++ S+ V Sbjct: 639 DKVLYFSDKGTVYSSPAYKI-PECSRTAAGTPLVQILSLSDGERITSIIPVSE------- 690 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +Q+++ ++ G+ K Sbjct: 691 -------------------------------------------FAADQYLVMLTVNGYIK 707 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + S + S R GI A + L V ++ND + + S G +I P I Sbjct: 708 KVSLN-YFASIRCT-GIIAIQLVP---DDELKWVKCCSNNDFVAMASQNGMVILTPCANI 762 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R R T+G V + ++V S++ I ++ + ++ E Sbjct: 763 RALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELDKTLE 802 >gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221] gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221] gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3] Length = 862 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] Length = 855 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 350/895 (39%), Positives = 534/895 (59%), Gaps = 65/895 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++ I ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K + Sbjct: 3 EQENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+S R L++G GNFGSVDGD AA RYT Sbjct: 63 KKSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A L+ D+GK+T+D++PN+DG +EPVVL AR+PN LVNG GIAVGMATN+P Sbjct: 123 EARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A+ NPDI + LM+ I GPDFPT ILGR+GI+ AY TGRGSI +R Sbjct: 183 PHNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSITMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE RE+I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R+V Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R A+A VILN LY+ T +Q+ F VNM+AL G +P+ + + ++ ++EVV R Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGRPKTLNIKQAIYYYIEHQKEVVRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL +A+ +LDEV+ IIR + + AR +L+ R Sbjct: 363 RTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIAR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS QT+AIL++RL RLTGL R+ I E + I+E IL Sbjct: 412 ---------------FGLSTEQTQAILDMRLQRLTGLEREKIEGEYREVKALIEELRAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 LL II+ EL+ +K+ RRT I ++++EDED I DM++T++ GY+K + Sbjct: 457 GDEELLLDIIRNELIEIKERYGDARRTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P YR QRRGG+G+ G+ DEDFV L STH ++LFF++ G V++ K + +P S Sbjct: 517 PSDSYRTQRRGGRGKQGMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L +++GE++ T++P F + Sbjct: 577 TAKGMPIINLLQIDKGEKVETMIPVD---------------------------FNSYLAN 609 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 +A + E ++ ++ ++ TK G R P+SA N G+R ISL + Sbjct: 610 QTVAEETQDESEEVA----DEQLSLVFITKEGLIKRSPLSAYARI---NKNGLRAISLNE 662 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+++++ + +D + + ++ Sbjct: 663 TDELVTVR-LAKSDDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRAIRLKKEDDLVVSM 721 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ Q +L ++EKG+GKRT+ FR R + + + G +V + V+++D Sbjct: 722 EIVRTTQDVLIITEKGYGKRTAMEQFRTQGR----GGSGIIGIKTDRGTVVGMRVVDEDD 777 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L+++ G IR+ I R+T+GV + + + +R+ ++ ++++ E+ +E+ Sbjct: 778 DIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIEEGDRLATIAKLKKDELEEES 832 Score = 73.3 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 103/246 (41%), Gaps = 11/246 (4%) Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 E E+ + +V ++ G +KR PLS Y + G + + + D + + + + Sbjct: 617 QDESEEVADEQLSLVFITKEGLIKRSPLSAYARINKNG--LRAISLNETDELVTVRLAKS 674 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 +L + G + + G ++ G+ + ++ + ++ ++ + Sbjct: 675 DDEMLIVTRQGMSIRFPL----EGEVRSMGRTARGVRAIRLKKEDDLVVSMEIVRTTQD- 729 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQ 704 V+ T+ G +R + F R G + + + ++ + +++DI+L T+LG Sbjct: 730 --VLIITEKGYGKRTAMEQFRTQGRGGSGIIGIKTDRGTVVGMRVVDEDDDIMLMTELGV 787 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R I GR++ GV+ +++ +GD++ ++A + + + + + + Sbjct: 788 AIRIDSQTISQM-GRSTRGVKVMNIEEGDRLATIAKLKKDELEEESAVDLENGFEDEAPE 846 Query: 765 ISGDTE 770 ++ Sbjct: 847 TDESSD 852 >gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum] Length = 854 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 376/902 (41%), Positives = 522/902 (57%), Gaps = 91/902 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + + D E T+VSI +E++ +YL Y+++VI+GRA+PD RDGLKPV RR+LF M + Sbjct: 2 DTPLPQDAPRE---TTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHE 58 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 MGV Y K ARI G+V+GKYHPHG+ A+YD R+ Q ++LR LI+GQGNFGSVDG Sbjct: 59 MGVRPGTAYRKSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG 118 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE RL + A ++ +L ++TVD+ PNYD S +EP VL A P +L+NG GI Sbjct: 119 DAPAAMRYTEIRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGI 178 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HN+ EV++ + ++DNP+ LM + GPDFPTG VILGR+GI++AY Sbjct: 179 AVGMATNIPPHNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYR 238 Query: 243 TGRGSIVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRGSIV+RGV +E T DR+ +V+ EIPY VNKA ++EKIAELVREK+I IAD+RD Sbjct: 239 TGRGSIVMRGVVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRD 298 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G R+V+ELKR A +I+NQL+ T LQS F N V++ +PE +L L+ F Sbjct: 299 ESDRDGMRIVVELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVF 358 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR++VV RRT + L KAR+R H+L GL A+ +DE++ +IR S +PE AR L+ Sbjct: 359 LGFRKDVVTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVS-- 416 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 T SE+Q +AIL+LRL RLTGL R+ I E + Sbjct: 417 ------------------------TFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVA 452 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I IL+SR LL +I+QE + + RRT IV ++ E I E +VT Sbjct: 453 ALIASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVT 512 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ GY+KR+P +V QRRGGKGR GV ++++D + H ++LFF+ LG VY+ Sbjct: 513 LSYEGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRL 572 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + LP ARGK L+++LSL+ ER+ I+P E + ++F T G ++ + Sbjct: 573 KTYELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFE---GDNLLLFGTVKGYFKKTR 629 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS++ I + G IA L+ D + V + +L+ T+ G +RF IR GR + Sbjct: 630 LSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRP-TGRAT 688 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVR I L+ D V+S V +D Sbjct: 689 RGVRAIRLSPDDSVVSFEEVSDSD------------------------------------ 712 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L +EKGFGKR + FR+ R GKG+R V+ E GA+ Sbjct: 713 -----------------LLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTP--ETGAV 753 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRE 899 VA+ V + D I +V+D G +IR+P EIR R KGV + S + E +V + Sbjct: 754 VAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAINPK 813 Query: 900 SE 901 E Sbjct: 814 RE 815 >gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 779 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 349/860 (40%), Positives = 517/860 (60%), Gaps = 88/860 (10%) Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G Sbjct: 1 RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 GNFGS+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN Sbjct: 61 HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPDFPTGA+++G Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMG 180 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 ++GI AY TG+GSIV+R + IE T RE+IVVTE PY VNK + E I LV+EKRI Sbjct: 181 KSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRI 240 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 I +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ + Sbjct: 241 EGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILS 300 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L IL A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RIIR S A Sbjct: 301 LRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEA 360 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + ELM + LSE Q++AIL++RL RLTGL RD I Sbjct: 361 QAELMSK--------------------------FKLSERQSQAILDMRLRRLTGLERDKI 394 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDC 532 ++E + L I + DIL+ R+ IIK EL VK + RRT ++ +L +EDED Sbjct: 395 QSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDL 454 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I D+++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L STH +LFF Sbjct: 455 IEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFF 514 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + +P A+G ++N+L L++ E I T++ D S ++ Y+ F T Sbjct: 515 TNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTT 572 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +HG V+R + +F I ++G A+ L DE+++V + DI++ TK G VRF SA Sbjct: 573 RHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 632 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R + R + GV+G++L +GD V+ + Sbjct: 633 VRGMS-RIATGVKGVNLREGDTVVGAS--------------------------------- 658 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 L + +L ++EKG+GKRT + ++ R GKG++ + Sbjct: 659 --------------------LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKI 698 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 ++ N G L + V ++ +++++D G +IR + I RAT GV + +D ++V Sbjct: 699 TEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 756 Query: 893 ---SVERIRESEIVDEAEST 909 +V + E+ E E+ Sbjct: 757 TFTTVAVAEKEEVGTENETE 776 >gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] Length = 845 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 350/846 (41%), Positives = 515/846 (60%), Gaps = 36/846 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD N+D + +EP VL R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G +A I+N DI++D LM+ I PDFPTG I G G++ A+ TGRG +V+R Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIYGYDGVREAFKTGRGRVVLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE I+V+EIPYQVNKA M++K A+LV EK+I IA +RDESDR+G R+V Sbjct: 243 AKAIIEEVK-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN L++YT+LQS FSVN +AL +PE L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGRPEMLNLKDMIHHFVDHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DRAH+L GL IA N+DEV+ +IR S N E AR++L+ R Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D +R E L I++ DIL Sbjct: 411 ---------------FELTEIQARAIVEMRLRQLTGLEQDKLREEYEELLKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + IIK+EL ++ + RRT I D+ D I E +V+T+SH GYVKR Sbjct: 456 ARKERRMDIIKEELEEIRAKYGDERRTDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG G+ G R+EDF+ LF+ + H ++FF+ G + +V+ +P GS Sbjct: 516 SLMEYKTQNRGGVGQKGSTTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L+ + T ++ ++L K G+ +RF R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V +++ + +K S E + Sbjct: 695 ADDNDEVIGMVAVNDPESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLV 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847 + E ++ +++ G R + R+ R+ +G+R ++ + + AV V Sbjct: 755 AINNV-TDEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLK---KGDTIAAVTKVK 810 Query: 848 NDNDQI 853 D D I Sbjct: 811 KDEDDI 816 >gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] Length = 837 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 324/901 (35%), Positives = 494/901 (54%), Gaps = 90/901 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ SD +T + + +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDDNNGSDNLF-DRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ + MG YHPHG++AIYD L R+AQ WS+R L++GQGNFGS Sbjct: 60 FDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGSR 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECR+ A ++ D+ ++TV+F+PNYDG EP VL +R PN+L+NG G Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++DNPD + ME ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDKG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI +RGV+ IE+ G+R+ I++TE+PYQVN ++ IAE +R+ +I I Sbjct: 240 IQDTYRTGRGSIRMRGVTSIEE-EGNRQVIIITELPYQVNPDNLVASIAEQIRDGKIAGI 298 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DES DR G R+VI LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 299 SKIDDESSDRVGMRIVITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + +V+VRRT++ L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 359 QMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ + + EVQ IL ++L RL + R I + Sbjct: 419 GLI--------------------------DLLDVDEVQADHILAMQLRRLAAMERQKIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L I + IL S R I++ EL + D+ RRT+I+ D+ +ED I R Sbjct: 453 ELAELEETIADLKAILESPQRQRDIVRTELAEIVDKYGDERRTQIIAASGDVSEEDLIAR 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + YR+QRRGGKG G ++ +D V F+ STH ++LFF++ Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ + + LP + ARG+ + N+L GE+I ++ E + Y+V AT HG Sbjct: 573 GRVYRLRAFELPEATRTARGQHVANLLEFQPGEQIAQVIQIQSYE---DAPYLVLATAHG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++++L+D+ Sbjct: 630 RVKKSRLTDYDTAR---------------------------------------------- 643 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 S G+ I+L +GD+++ + A+ D + M + + Sbjct: 644 -----SGGLIAINLNEGDRLVGAQ-LCTAEDDLLLVSEEGQAMRFTADDETLRPMGRATA 697 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + + ++ + + G+GKRT ++ R G G+ A K Sbjct: 698 GVKGMRFREEDQLLALTVVAEDSSLFVATSGGYGKRTPMEEYPTKGRGGLGVVAFKYDK- 756 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G L+ VND+D+I+ ++ G +IR V++IR + RAT GV + AK +V+V+ Sbjct: 757 -KRGKLIGALTVNDDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAVD 815 Query: 896 R 896 R Sbjct: 816 R 816 >gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 863 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595] Length = 854 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 324/922 (35%), Positives = 503/922 (54%), Gaps = 101/922 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E +I + I V + EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M Sbjct: 1 MAEEMI---QYNHGLIKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + + K +I G+VMG +HPHG+AAIYD + R+ Q W++R L+ GQGNFG+ Sbjct: 58 WDGGYRPDSSFSKSVKIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTA 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 AA RYTE R+ + A ++ D+ ++TVDF PN+DGS QEP VL AR+PN+LVNG Sbjct: 118 GDLGAAAPRYTEARMAQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSE 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV G +DNP+ + L++ ++GPDFPTGA ILG G Sbjct: 178 GIAVGMATRIPPHNLREVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TG GSI R + +++ R+ +VVT++P+QVN +L+K+ E +++ R+ I Sbjct: 238 IESMYRTGNGSITQRAIVEVDEI-NGRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGI 296 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDES R G R+VI LK+ A A V+LN LY++T +Q+ F NM+AL P +L Sbjct: 297 ADIRDESSGRAGQRIVIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDGVPRTLSLD 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G ++ +V + EV+ RRT++ L K +R +L GL A+ LDEV+ +IR SP + AR Sbjct: 357 GFVRHWVNHQIEVIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEARE 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + ++E+Q IL ++L RL L R I + Sbjct: 417 GLMK--------------------------LLDINEIQADHILAMQLRRLAALERQKILD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + + DIL+ R I+ E+ + + RRT+I+ ++ DED I Sbjct: 451 ERDEKLALRDDYQDILAKPERQRTIVSDEVGDIVAKFGDDRRTKILPFDGEVSDEDLIPE 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D+VVT++ G+VKR +S YRAQ RGGKG G +RD+D V + STH LFF+++ Sbjct: 511 DDVVVTITRSGFVKRTKVSEYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNM 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G+ A+G+ + N+L+ ERI +++ + Y+V AT+ G Sbjct: 571 GRVYRIKGYELPEGARDAKGQHIANLLAFQPDERIASMVSIRSYD---QADYLVLATEDG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ +L+D+ G IA+KL D ++S D+LL ++ GQ +RF Sbjct: 628 LVKKTRLADYDSARTGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTA 687 Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV G+ D++++M +V Sbjct: 688 DDATLRPM-GRATSGVTGMKFRGDDRLLAMDVVDEG------------------------ 722 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + V+E G+ KRT +R+ R+G GI+ Sbjct: 723 -----------------------------AEVFVVTEGGYAKRTDIEQYRVQGRAGLGIK 753 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 +V + G LV + D+++++ + G ++R V+E+ + R T+GV + K Sbjct: 754 VANVVEA--RGDLVGALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKG 811 Query: 889 ERVVSVERIRESEIVDEAESTE 910 ++++S+ E + DE +T+ Sbjct: 812 DKIISIALNLEKQEDDEEVTTD 833 Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 14/245 (5%) Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV--LFFSS 594 D +V + G VK+ L+ Y + R GG + R++ + L + S Sbjct: 618 DYLVLATEDGLVKKTRLADYDSARTGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVS 677 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G P R + + + +R+ + V T+ Sbjct: 678 RGGQSLRFTADDATLRPMGRATSGVTGMKFRGDDRLLAMDVVD------EGAEVFVVTEG 731 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + + ++ + +K+ + E ++ +++++ + G+ VR + Sbjct: 732 GYAKRTDIEQY-RVQGRAGLGIKVANVVEARGDLVGALITHPGDEVMVIMESGKVVRSAV 790 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + GRN+ GV+ + KGD++IS+A+ L D +E + + + Sbjct: 791 DEV-SLTGRNTQGVKFATPDKGDKIISIALNLEKQEDDEEVTTDVVEPTTEPVSEQDAET 849 Query: 771 EITSL 775 Sbjct: 850 TTDVE 854 >gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 867 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 363/899 (40%), Positives = 534/899 (59%), Gaps = 94/899 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + I V + EM+ S++ YA++VI RA+PD+RDGLKPVHRRILF M G +K Sbjct: 21 DNINNIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKP 80 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCA G V+G +HPHG+AA+YD++ R+AQD+S+R +++G GNFGS DGDPPAA RY Sbjct: 81 YRKCATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRY 140 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A ++ D+ K+TVDF+PN+D EP+VL +R+PN+LVNG GIAVGMAT+I Sbjct: 141 TEARLTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDI 200 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE +D V I+NPD DL+ +MEI+ GPDFPTG ILG +GI+ Y TG+G I + Sbjct: 201 PPHNLGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTILGLSGIRETYRTGKGRITV 260 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYR 309 R + IE +R +IVV ++PY VNKA ++EK+A+LV+EKRI I+ +RDESDR R Sbjct: 261 RSAASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIR 320 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-----YKPERFTLIGILKAFVAF 364 +VIELKR A+ V+LN+LY+ T LQ F+ NM+AL Y+P+ TL+ L ++A Sbjct: 321 IVIELKRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAH 380 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 ++ VV+RRTK+ L+KA R H++ GL A+ N+DEV+RIIR S N ETA++ L +R Sbjct: 381 QKSVVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCER---- 436 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 S Q + I+++RL RLT L R+ ++ EL+ L ++I Sbjct: 437 ----------------------FDFSIRQAQHIVDMRLGRLTALERERLQKELDELIVKI 474 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVS 543 + I++ S L +I EL +K RRT I + EDE+ + E++V+T++ Sbjct: 475 EYFNRIINESSLLNQVICDELTDLKTRYANKRRTVIEPYSLDEFEDEELVKEEEVVITLT 534 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVKR P+ Y+ Q RGG+G SG+ R++DFV L STH +LFF++ G V++ K Sbjct: 535 HFGYVKRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKG 594 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P QA+G+A++N+L L +GE++ T++ E Y++ AT G +++ L Sbjct: 595 YQIPEAGRQAKGQAIVNLLQLVEGEKVRTVITVHEFNR---EDYLLMATARGMIKKTSLY 651 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ I ++G IA+ L DE++ V+ +++L T G +RF + IR GRN+ G Sbjct: 652 EYANIQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIRN-TGRNTFG 710 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V GI L D+VI MA V Sbjct: 711 VSGIKLRHSDKVIGMAAVDE---------------------------------------- 730 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E+ +L +S+ G+GKR+ ++RI NR GKG+ ++ + G L Sbjct: 731 -------------ERHLLVISKNGYGKRSEFNEYRIQNRGGKGLITYKPTE--QTGDLAG 775 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + +ND D II+++D G +IRV EI I SR TKGV + TA ++V + ++ + Sbjct: 776 IASINDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLMRTAG--QIVDLAVVQHDDE 832 >gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 863 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 359/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VV++ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVNIAKCPKEENDEDELSDE 856 >gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] Length = 829 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 360/842 (42%), Positives = 519/842 (61%), Gaps = 38/842 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+++ ++I+ E++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M Sbjct: 1 MTEPSIESNQQPT-----IAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G +N+ Y+K ARI G+V+GKYHPHG+ A YD L RMAQD+S+R L++GQGNFGS+ Sbjct: 56 RELGNTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSM 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ + L+ DL K+TVDF PNYD S QEP VL +R PN+L+NG Sbjct: 116 DGDSAAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSE 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT IP HNL EV++G +A++DNP+I + LMEII GPDFPTG I GR GI+ A Sbjct: 176 GIAVGMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGGFICGRAGIREA 235 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG IV+R +HIE+ E IV+TEIP+Q NKAA++EKIA L++EKRI IA++R Sbjct: 236 YETGRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV++L++ D+++NQLY+ T LQ F + ++ + KPE L IL+ Sbjct: 296 DESDRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIVNNKPEILNLKQILQH 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+A R+ VV RRT + L KA +RAH+L GL IA+ +LDEVV +IR S NP A+ L+ R Sbjct: 356 FLAHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILR 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q + IL++RL RLTGL RD I ++ N + Sbjct: 416 --------------------------FELSEIQAQTILDMRLQRLTGLERDKIISDYNEI 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I +L+ + ++ II++E +++E RRT I++ ++ ED I E+MVV Sbjct: 450 QAKISWLKQVLADDNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KR PL++YRAQRRGGKG G+V ++DFVT L+ S+ + LFF++ G V+ Sbjct: 510 TVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ LP+ ARGKA++N+L L + E++ I+P + + + + V+ TK G V++ Sbjct: 570 RKVYELPLAGRTARGKAIVNLLELGEDEKVAAILPVADLANMDDTVSVLTVTKQGRVKKT 629 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +S++ + R GK + + DEILS + +++I L TK G + F S +R GR Sbjct: 630 FISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAM-GRL 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+GI+L D+V+ +A++ + +A +S Sbjct: 689 AAGVKGITLGDDDEVVGVAVLKSDASILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTS 748 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + E ++ V+ G R RI R+ +G+R ++ + G Sbjct: 749 ERNGNVVGVLPVV--DEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDE----GE 802 Query: 841 LV 842 LV Sbjct: 803 LV 804 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 18/214 (8%) Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICY 754 K G +RF +S I+ + + + L + D++IS + + + + Sbjct: 409 KEGLILRFELSEIQ------AQTILDMRLQRLTGLERDKIISDYNEIQAKISWLKQVLAD 462 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + R E + + E ++L E+ ++TVS G+ KR Sbjct: 463 DNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVVTVSHTGYIKRNPL 522 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + +++ + D + ++KG + V E+ +A Sbjct: 523 TLYRAQRRGGKGVKGMVTLEDDF---VTSLYTASSLDTFLFFTNKGRVFWRKVYELPLAG 579 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 R +G V + +DE+V ++ + + +D+ Sbjct: 580 RTARGKAIVNLLELGEDEKVAAILPVADLANMDD 613 >gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH] Length = 839 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 329/903 (36%), Positives = 520/903 (57%), Gaps = 88/903 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E + I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ + Sbjct: 13 QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+ Sbjct: 73 RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A LL D+ KDTVDF NYDG QEP VL A +PN+L NG GIAVGM+T Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP+HNL E++ G + +IDNPD ++ L+ +I+GPDFPTGA I+ GI++ + TG+G++ Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNV 252 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR IE+ R +VVTEIPY VNK +++EKI ELV+ + I IAD+RDES R+G Sbjct: 253 VIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR +V+LNQL++ T LQ F VNM+AL P+ + L ++ + +V Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDV 371 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++R+T++ L K ++R H+L GL IA N+DEV+ II+ S N + A L +R Sbjct: 372 LIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------- 423 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L E+Q RA+L++RL L+ L + ++ E L I+ C Sbjct: 424 ------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQ 465 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L +IK++L + ++ PRR+ I+ D++DED I +E++V+T+S GY Sbjct: 466 QVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGY 525 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 526 LKRIGVDSYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +G +N++ +++ E+I ++ + N Y F TK+G ++R LS+F Sbjct: 586 PGFRTNKGIPAVNLIKIDKDEKICALISVNDY----QNGYFFFCTKNGTIKRTSLSEFAN 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I GK A+ D + SV + ++DI + + G VRF +R + R ++GV GI Sbjct: 642 ILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGI 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +G+ V ++ + Sbjct: 701 NLNQGEFVNGLSTSSNG------------------------------------------- 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTV 765 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 N+ ++++S G ++R+ + ++ + T GV + + ER+ +V ++ E + Sbjct: 766 FGNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTT 825 Query: 908 STE 910 +TE Sbjct: 826 ATE 828 >gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8] Length = 804 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 341/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K A Sbjct: 5 LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+A +YDAL RMA +++R LIEGQGNFGS+D DPPAA RYTE RL Sbjct: 65 RIVGEVMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L+D+ K+TV+ N+DG+ +E VL ++ PN+++NG GIAVGMATNIP HNL Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 + A+ +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR + Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y + RAHV+ GL A + VV I+R S + E+AR+ LM+ Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ I+K+E L +K + PRRT + + ++ +E+ IV ED+V+T+SH GY+K PL+ Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++D V + + +S LF ++LG Y K ++L R Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673 G+ + L+L E+I + +V ATK G ++R L +F G Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+K++ DEI+S E + +++ TK+G +RFP+S +R GRN+ GV+ I L G Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S+ ++ + Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV+EKGFGKRT +RI R G G+R S +N+ G +VAV V +++ Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I++V+ G +IR PV+EI + R TKGV + D+ + V +++ Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 15/252 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+ ++ +E L V +E+ ++ + G P+++ R R Sbjct: 473 QQYGDPRRTEVTDQSIEYNEEELIV----EEDVVITLSHKGYLKSTPLNSYRSQK-RGGK 527 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781 G+ L++ D+V + + + + ++ +L + G + ++ Sbjct: 528 GITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839 E L + + ++ ++ G KRT+ +F SNR G+RA + Sbjct: 588 EDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641 Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V+ VN + ++V + G IR PV+++R R GV + VVSV+ I Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701 Query: 899 ESEIVDEAESTE 910 E + TE Sbjct: 702 PGEEGEILTVTE 713 >gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] Length = 819 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 336/899 (37%), Positives = 503/899 (55%), Gaps = 90/899 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I V + +EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M + G K + Sbjct: 2 SEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKAF 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ G+VMG++HPHG+AAIYDAL R+ Q W++R L +GQGNFGS D AA RYT Sbjct: 62 SKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ A ++ D+ +DTVDF PNYDG EP V+ R+PN+LVNG GIAVGMATNIP Sbjct: 122 ETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV G + ++NPD + L+E I+GPDFPTGA +L GIK+AY TGRGS Sbjct: 182 PHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306 +V+RGV IE+ R +VV E+PYQVN + KIA LV+E ++ IAD+RDE S R Sbjct: 242 VVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRT 300 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R++I LKR A A V+LN LY++T LQ F VNM+A+ P +L ++ +V + Sbjct: 301 GQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCSFIRLWVEHQI 360 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+VRRT + L +A RAH+L A+ +DEV+++IR S + E A+ LM Sbjct: 361 EVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMA------- 413 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + + E Q RAIL+L+L RL L R I +E + I Sbjct: 414 -------------------LLKIDETQARAILDLQLRRLAALERQRIISEAREIEELISS 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545 ILS ++ +I +EL + + RRT I+ + ED I E +VV ++ Sbjct: 455 FRKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIEDLIPVEPVVVVMTRC 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR + YR+Q RGG+G G ++ +D V +TH ++FF++ G VY+ K + Sbjct: 515 GYIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S +ARG+ + N+L L E +T I+ + + +V ATK G V++ L ++ Sbjct: 575 VPEASREARGQHVANLLPLKPNEAVTRILSVSNFD--SEDTSLVLATKDGYVKKTTLKEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 +G IA+KL D+++S + DI+L TK + +RF +R + R S GV+ Sbjct: 633 DTSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLS-RGSYGVK 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GISL + D ++S ++L D+ Sbjct: 692 GISLRENDLLLSAELILSDDS--------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +I VSE+G+ KR+ D+++ R G G+R ++++ + G L + Sbjct: 713 -------------YIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITE--QKGVLADML 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 VND+D+++++ G +IR V E+ R T GVV + ++++++ + + ++ Sbjct: 758 VVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAMTIAEKCDDLE 816 >gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581] gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae] Length = 867 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 314/895 (35%), Positives = 523/895 (58%), Gaps = 88/895 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E+ I I +EM+NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ N Sbjct: 59 DSEKNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNS 118 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 119 AYKKSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 178 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++ + K+TVDF PNYDGS QEP VL R+PN+LV+G GIAVGMAT Sbjct: 179 YTEARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATK 238 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + N DI ++ L + + GPDFPTGA I G +GI+ AY TGRGS + Sbjct: 239 IPPHNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIFGVSGIQQAYKTGRGSFI 298 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE + + +I+ EIPY+V K A++EK+ +LV+EKR+ I D+RDE++RQG R Sbjct: 299 LRAKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIR 358 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G + ++ILNQLY+ T Q +S+NM+A+ +P+ L IL ++ ++E+ Sbjct: 359 VVFEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGEPKLLNLKEILYQYLLHQKEIN 418 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L K +++ +VL+G+ +AV N+DEVV+II+ S + A+ +L +R Sbjct: 419 LRGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKR--------- 469 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ +QT+AI+++RL RLT L + + E+ + EI + Sbjct: 470 -----------------FDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEE 512 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I++S +L+ ++ + L + + PRR+ I + ++ DED I R D++++++ YVK Sbjct: 513 IIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPRSDVIISLTDNNYVK 572 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L YR Q RGG G S + +D++ ++ +THT +L +S ++K + ++P Sbjct: 573 RINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDS 632 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + Q +G +N+L + + E+I T++ + +D + ++V ++ G +++ L + IN Sbjct: 633 TKQGKGIPFVNLLPIEKDEQIYTLLVWNQDYAHH---FLVTVSRLGLIKKTPLEFYKNIN 689 Query: 670 RSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GK A+KL+ D ++S + ++L+ + G+ +F +IR GR ++GV+GI Sbjct: 690 KNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKVNKFDFDSIRS-TGRVAMGVKGI 748 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + VI Sbjct: 749 KLTNDEFVIG-------------------------------------------------- 758 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +++ + G+GK+TS ++R ++R+ KG++ + + G+L + + Sbjct: 759 ---ASHSLSGEYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNT---EKAGSLCFISII 812 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 N++ ++V+ KG LIR + +I I SR TKGV I + ++ + SV + + E Sbjct: 813 KGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSVTIVDKFEE 867 >gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] Length = 862 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 360/942 (38%), Positives = 552/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++D+ D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] Length = 876 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 348/927 (37%), Positives = 506/927 (54%), Gaps = 114/927 (12%) Query: 1 MTEHIISSDEE-------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53 M + I +E I V + EMQ SYL YA++VI+GRA+P + DGLKPVH Sbjct: 1 MADDITPEPDEVRSEPAHNHGRIDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVH 60 Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RR+++GM G +K + KCAR+ GEVMG YHPHG+A IYDAL R+ Q WSLR L G Sbjct: 61 RRVIYGMYDGGFRPDKSFSKCARVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALG 120 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 QGNFGS AA RYTE ++ + A ++ D+ ++TVDF NYDG QEPVVL +R+PN Sbjct: 121 QGNFGSPGNQGAAAPRYTETKMSQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPN 180 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGA 229 +LVNG GIAVGMATNIP HNL EV G + ++NPD + L ME I GPDFPT A Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVSAGALWALENPDATREELLEALMERIPGPDFPTAA 240 Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289 ILG GIK+AY TGRGSI +R V +IE+ R +V+TE+PYQVN + KI +L R Sbjct: 241 QILGTRGIKDAYRTGRGSITMRAVVNIEEIQ-GRTCLVITELPYQVNPDNVAVKIGDLAR 299 Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 E +I IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ F NM+A+ Sbjct: 300 EGKITGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGV 359 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P +L G + ++ + V+VRRT+Y L KA +R H+L G A+ LDEV+ +IR SP Sbjct: 360 PRTLSLDGFVSHWIDHQVNVIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSP 419 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 + A L + + + ++Q +AIL+++L RL L Sbjct: 420 TAQDANEGLQK--------------------------LLDIDDIQAQAILDMQLRRLAAL 453 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDM 527 R I +E L I + DIL+S +R II+ EL + D RRT+I+ D+ Sbjct: 454 ERQKIVDEATELEARIADFNDILASPARQRTIIRDELTGIVDRFGDDRRTQILHGFDGDV 513 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I E+MV+TV+ GY+KR YR+Q RGGKG G +R +D V F+ +TH Sbjct: 514 SIEDLIAEEEMVITVTRDGYIKRTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHH 573 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +LFF++ G VY+ K + +P A+G+ + N+L+L E I I+ + Y Sbjct: 574 WLLFFTNKGRVYRSKAYEVPEAGRDAKGQHVANLLALQPDEEIAQILDIRDYSV---ATY 630 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-------------RDEILSVETCTQEN 694 +V AT++G V++ +L ++ + G IA+KL DE++S + + Sbjct: 631 LVLATRNGLVKKTRLDEYDTNRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGD 690 Query: 695 DILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 DILL ++LG +RF + +R GR++ GV+G+ +GD ++S ++ Sbjct: 691 DILLISRLGMSLRFSATDNALRPM-GRSTSGVKGMDFREGDSLLSASV------------ 737 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 ++F+ V+E G+ KRT Sbjct: 738 -----------------------------------------AKDDEFVFVVTEGGYAKRT 756 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 + ++R+ NR G GI+ ++ ++ G L V++ D++++V G ++R V E+ Sbjct: 757 AVTEYRMQNRGGLGIKVARLT--DDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVAEVPA 814 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRE 899 R T GVV D+R++++ R E Sbjct: 815 KGRDTMGVVFARAGGDDRIIAIARNAE 841 Score = 54.8 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 85/250 (34%), Gaps = 24/250 (9%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV-----------TDLFIVSTHTSVLF 591 + G VK+ L Y R+GG + + D +V +L Sbjct: 635 TRNGLVKKTRLDEYDTNRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILL 694 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 S LG + P R + + + +G+ + ++ +V Sbjct: 695 ISRLGMSLRFSATD-NALRPMGRSTSGVKGMDFREGD------SLLSASVAKDDEFVFVV 747 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS--RDEILSV--ETCTQENDILLTTKLGQCVR 707 T+ G +R ++++ ++ G + +K+ D + ++ +++L+ G+ VR Sbjct: 748 TEGGYAKRTAVTEY-RMQNRGGLGIKVARLTDDRGVLAGGMMVSEGDEVLVVLASGKVVR 806 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ + GR+++GV D++I++A + + Sbjct: 807 SAVAEV-PAKGRDTMGVVFARAGGDDRIIAIARNAERNLAETTETTTEPAAVPADEADAS 865 Query: 768 DTEEITSLKN 777 E + Sbjct: 866 APETPEESTD 875 >gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] Length = 847 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 339/902 (37%), Positives = 523/902 (57%), Gaps = 61/902 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Sbjct: 3 EDMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY TGRGSI+ Sbjct: 183 IPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ +++I+V EIPY VNKA ++ +IA+L R K I I D+ DE+DR G R Sbjct: 243 VRAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E+VV Sbjct: 303 IVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA+ R H++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 363 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G LS+ Q +AIL++RL RLTGL R+ I E L I + D Sbjct: 412 ---------------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R R+ II EL+ ++ + RRT + + ++EDED I +D++VT++H GY+ Sbjct: 457 ILAHRERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+ +++Q RGG+G G+ + ++DF+ L STH +LFF++ G VY K + +P Sbjct: 517 KRLPVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L+++ E+I+ ++ + + ++ ++ F TK G V+R + +F I Sbjct: 577 YGRAAQGIPIINLLNIDSKEKISAVINVSHET-NDDDKFLFFTTKDGTVKRTPVPEFKNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE++ V+ + +++ T+ G + F + +R GR + GVRGI Sbjct: 636 RSNGLKAINLHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI A + D + + + + + Sbjct: 695 LRDNDSVIGAAPLHQDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPL 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ I+ V+++G R + RS G+ + ++ + V + Sbjct: 753 VGMTTVAGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKED 812 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+D +G +D+ +VE ++ + E+ Sbjct: 813 DSDD-----------------------DAQG------TEDDS-ATVEVTDDANPDENTEN 842 Query: 909 TE 910 TE Sbjct: 843 TE 844 >gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 834 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 353/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.0 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 88/233 (37%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834 >gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 834 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 353/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.0 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A + +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAAADTTPNNDKE 834 >gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] Length = 807 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 363/835 (43%), Positives = 518/835 (62%), Gaps = 39/835 (4%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M + +N+ + K AR+ Sbjct: 10 VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + Sbjct: 70 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L DL K+TVDF P YDG+ EP+VL + PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 G V+DNP+I L LM +I GPDFPT ILG+ GI +AY+TGRG I IR + +EK Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFILGKQGIIDAYSTGRGIIKIRSRAFVEK 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + ++E+I+V+EIPYQVNK +LEKIA VREK+I I+++RDESDR G R+VIE+KR A Sbjct: 250 FAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A VILNQLY++T ++ F + ++A+ +PE TL G++ F+ R E++VRRT + L Sbjct: 310 YALVILNQLYKFTQMEVSFGIILLAIVNGRPEILTLKGMIDHFIKHRREIIVRRTIFDLK 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL A+ LDEV+ +IR S + + A+ LM Sbjct: 370 KAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAE------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 SE+Q +AIL++RL RLTGL R+ I E +L +I IL++ S +L Sbjct: 412 --------FQFSEIQAQAILDMRLQRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVL 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK+ELL +++ RR+ I++ +++ ED I EDMVVTVSH GY+KR P+S+YRA Sbjct: 464 DIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRA 523 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG +G ++EDFV LF+ S+H LFF++ G VY +KV +P G +RGKA+ Sbjct: 524 QRRGGKGLTGAKPKEEDFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAI 583 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L L +GER+ TI+P + E YVV ATK G V++ +L + G I +K+ Sbjct: 584 VNLLDLKKGERLATILPVRDYE---EGKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKI 640 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+++V + + DI LTTK G+ +RF S +R GR + G GI + G++V+ M Sbjct: 641 RENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSM-GRVAAGNIGIKMETGNEVVGM 699 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + + + + + +S + + E Sbjct: 700 ETLGEGATILTVTENGFGKRTNREEYPTQARAGKGVITIKTSERNGLVVYAYEVTDQDEL 759 Query: 799 FILTVSEKGFGK--RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 I+T G GK R + D + R+ +G++ D+ + + +V V + ++D Sbjct: 760 MIIT----GHGKIIRIRAADISVIGRNTQGVKLIDLGEGEK---VVGVAKIMEDD 807 Score = 191 bits (484), Expect = 6e-46, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 18/275 (6%) Query: 636 FPEDESSWNNLYVVFATKHG--NVRRNKLSDFIQINRSGKIAM----KLDSRDE---ILS 686 + ++ Y +F T G ++ S A+ L + IL Sbjct: 542 VEHLFVASSHDYFLFFTNKGRVYWKKVHEIP-EGGRMSRGKAIVNLLDLKKGERLATILP 600 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 V + +++ TK+G + + ++ ++ SVG G+ + + D++I+ V + Sbjct: 601 VRDYEEGKYVVMATKMGFVKK---TELKAYSHPRSVGTIGLKIRENDELIA---VRVSSG 654 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 D D + + S + + + + N +E E + ILTV+E Sbjct: 655 DQDIFLTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEVVGMETLGEGATILTVTEN 714 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 GFGKRT+ ++ R+GKG+ S+ N G +V + V D D++++++ G +IR+ Sbjct: 715 GFGKRTNREEYPTQARAGKGVITIKTSERN--GLVVYAYEVTDQDELMIITGHGKIIRIR 772 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +I + R T+GV + + E+VV V +I E + Sbjct: 773 AADISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +L A Y + + + + + S + + E ++L +E Sbjct: 443 EALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEED 502 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++TVS +G+ KR +R R GKG+ + + + L F + +D + ++ Sbjct: 503 MVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEEDFVEHL---FVASSHDYFLFFTN 559 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 KG + V+EI R ++G V + K ER+ ++ +R+ E Sbjct: 560 KGRVYWKKVHEIPEGGRMSRGKAIVNLLDLKKGERLATILPVRDYEE 606 >gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 354/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.4 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A + +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834 >gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 817 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 353/837 (42%), Positives = 525/837 (62%), Gaps = 34/837 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVITIIKEEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQRRGG+G G + D+DFV +L +TH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ E S N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIIS--EKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V +DI++ TK G VRF S +R + R++ GVRG++L Sbjct: 634 NGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+VI + I + Y K A G + N + G ++ Sbjct: 693 EGDEVIGASRITDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ I+ +++ G RTS D + R+ G++ + + +I L V P Sbjct: 750 GLVTVNGDEDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKIMTLALVQP 806 Score = 99.1 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 27/263 (10%) Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 VRR + R+ + + LD DE++S+ ++ + + + RF +S Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETD---VIAQGELMSRFNLSE- 415 Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766 R S + + L + +++ + ++ D + ++ + + Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMD 470 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 + + + G + ++L +E ++T+S KG+ KR + +FR R G+G Sbjct: 471 EIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRG 530 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883 ++ T V+ + + LV+ N +D I +++KG + R+ EI R KG V + Sbjct: 531 VQGTGVNDDDFVRELVST---NTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587 Query: 884 STAKDERVVSVERIRESEIVDEA 906 + E V ++ I E D Sbjct: 588 KLDEGETVQTI--ISEKGSDDNE 608 >gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] Length = 862 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 359/942 (38%), Positives = 551/942 (58%), Gaps = 123/942 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D +L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKIHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S L +I+ EL ++++ D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSEILLENLIRDELKEIRNKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ + D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEILLSGSEENLENQEIKNLDDENLENEESA 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 SIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAIVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL+VS KG Sbjct: 747 -------------------------------------------------QEILSVSAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR A R T GV I +++ VVS+ + + E ++ S E Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856 >gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] Length = 795 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 348/820 (42%), Positives = 503/820 (61%), Gaps = 37/820 (4%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ +K Y K ARI GEV+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+ + RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ K + L+ D+ K+T+D+ Sbjct: 61 YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP H LGEV+DG +A+ NPDI + Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LME I GPDFPT +ILGR+GI+ AY TGRGSI++R IE+ ++ I+VTE+PY Sbjct: 181 AELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA ++EKIAELVR+K+I I DLRDESDR G R+V+E++R A+A+V+LN LY++T+L Sbjct: 241 QVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTAL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F +NM++L +P+ L L ++ ++ V+ RRT Y L KA RAH+L GL IA Sbjct: 301 QTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 + +LDEV+ +IR S + AR+ LM+R LSE Q Sbjct: 361 LDHLDEVITLIRSSKTADIARQGLMER--------------------------FGLSEKQ 394 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 +AIL++RL RLTGL R+ I E L I E IL+ ++L II++EL VK+ + Sbjct: 395 AQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFN 454 Query: 514 TPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 RRT I G+ +EDED I +++ +T++H GY+KR+P S Y+ Q RGG+G G+ Sbjct: 455 DKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTN 514 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 D+DFV L STH +LFF++ G VY+ K + +P S A+G +IN+L +++GE + Sbjct: 515 DDDFVEQLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNA 574 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692 I+P E ++ Y+ F TK+G +R LS F I +G IA+ L DE++SV + Sbjct: 575 IIPIREFG---DDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSG 631 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDER 751 + DI++ T G +RF +R GRN+ GV+ I+L DQV+ M IV + + Sbjct: 632 DKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKAITLGDEDQVVGMEIVEEDMNVLIVTK 690 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 Y K + + + N + G + + E+ I+ ++ G R Sbjct: 691 NGYGKRTPIEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV---TGEEDIMLITAAGIIIR 747 Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 R+ +G+R + E+ + D D Sbjct: 748 MPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQ--KDED 785 >gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] Length = 821 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 359/885 (40%), Positives = 507/885 (57%), Gaps = 91/885 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + + + I V I DEM+ SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M Sbjct: 1 MSSDVPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV + K + I GE MG YHPHG++AIYDALARMAQD+SLR L++GQGNFGSV Sbjct: 61 EEMGVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ A LL D+ KDTVDF NYD EPVVL AR PN+LVNG Sbjct: 121 DGDPPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGAS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME------IIRGPDFPTGAVILGR 234 GIAVGM+TNIP HNLGEV+D + +IDNPD + L++ I+GPDFPTGA I+ R Sbjct: 181 GIAVGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIVNR 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI +AY GRG + +R IE+T ++IVVTE+PYQ NKA +E+IAE V+E +I Sbjct: 241 EGIWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIE 300 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I D+RDESDR G RVVIE KRG++ADV+ NQL + L++ FS+ +AL +P L Sbjct: 301 GIRDIRDESDRDGVRVVIECKRGSNADVVKNQLLEH-HLENTFSIISLALVDDQPRVLNL 359 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 +L+AFV R EVV RR+++ L +A+DRAH+L G +A+ N+D+VV I+ S + + A Sbjct: 360 KELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRDAAM 419 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 L + LSE Q I+ ++L LT + +I Sbjct: 420 AALRK--------------------------AYDLSEDQAEHIVRMQLGSLTSMEAGEIE 453 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534 E + EI+ IL+ S LLG+IK EL +K E R+T ++E + ED I Sbjct: 454 TEYEDVQAEIERLETILNDESELLGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIA 513 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 E++VV V+ YVKR+PLS + Q RGGKG G ++ D V+ +F STH +L F++ Sbjct: 514 EEEVVVVVTEEDYVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTN 573 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G VY+ KV+ LP ARG + +N+L LN GE IT ++ + + Y+ AT+ Sbjct: 574 QGQVYRLKVFELPEMGRTARGTSAVNVLDLNDGEEITAVVNTDD----IDEGYLAMATEA 629 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V+R +S+F ++ G A+ L+ D ++ VE + D+L+ TK G +RF S R Sbjct: 630 GYVKRTAVSEFENVHAGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDAR 689 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR++ GV GI L D+ + D Sbjct: 690 PM-GRSARGVNGIKLEGDDRATGLVAASSDD----------------------------- 719 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 ++ +LTV++ G+GKRT ++R +R GKG+ + Sbjct: 720 ----------------------DRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDE 757 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 N G + ++ V+++D ++++S+ G ++R V+EI R TKG Sbjct: 758 RN--GPVCSLDAVSEDDGLVIMSESGQIMRTTVDEISTVGRNTKG 800 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 62/255 (24%) Query: 655 GNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 V+R LS+F +R GK + + D + +V T + + +L T GQ R + Sbjct: 525 DYVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFE 584 Query: 713 IRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + GR + G ++ L G+++ ++ D Sbjct: 585 LPEM-GRTARGTSAVNVLDLNDGEEITAVVNTDDID------------------------ 619 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 E ++ +E G+ KRT+ +F + GIRA Sbjct: 620 ---------------------------EGYLAMATEAGYVKRTAVSEFENVHAG--GIRA 650 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 + + +LV V + + +++ + G IR ++ R R+ +GV D+ Sbjct: 651 VSL---EDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGVNGIKLEGDD 707 Query: 890 RVVSVERIRESEIVD 904 R + + D Sbjct: 708 RATGLVAASSDDDRD 722 >gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] Length = 829 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 359/836 (42%), Positives = 508/836 (60%), Gaps = 84/836 (10%) Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD Sbjct: 1 MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 60 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAV Sbjct: 61 AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 120 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TG Sbjct: 121 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 180 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RGSI +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ Sbjct: 181 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 240 Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ Sbjct: 241 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 300 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 301 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR--- 357 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSE Q +AIL++RL RLTGL RD I E N L Sbjct: 358 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 394 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542 I E IL+ LL +++ EL ++D RRT I G D+EDED I E +V+T+ Sbjct: 395 ISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITL 454 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH Y+KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K Sbjct: 455 SHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLK 514 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S Q++G ++N + L E I+T++ + E + ++VFATK G V+R+ L Sbjct: 515 GYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSAL 572 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F +INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + Sbjct: 573 SNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTAT 631 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+GI+L +GD+V+ + + D Sbjct: 632 GVKGITLREGDEVVGLDVAHANSVDE---------------------------------- 657 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V Sbjct: 658 -----------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVV 698 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + V + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 699 CITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754 >gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 358/938 (38%), Positives = 551/938 (58%), Gaps = 123/938 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 IR A R T GV I +++ VVS+ + + E ++ Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852 >gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316] gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316] gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] Length = 819 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + IV + Y K A G + N ++ G ++ Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ +++ G RT+ + + RS G++ + ++ +V V V Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806 Query: 850 NDQ 852 + Sbjct: 807 EIE 809 Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%) Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L++ +G +I ++ ++ +V T+ + + + + + L Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHIL-----EGLLVAL 384 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733 D DE++++ ++ + I + RF +S R S + + L + D Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435 Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ S ++ D + ++ + + + + + G + + Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 495 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E ++T+S KG+ KR + +FR R G+GI+ T V+ + + LV+ + +D Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 ++ ++ G + R+ EI R KG V + + E + ++ R+ ++ Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606 >gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus agalactiae ATCC 13813] Length = 819 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + IV + Y K A G + N ++ G ++ Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ +++ G RT+ + + RS G++ + ++ +V V V Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806 Query: 850 NDQ 852 + Sbjct: 807 EIE 809 Score = 91.0 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%) Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L++ +G +I ++ ++ +V T+ + + + + + L Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHIL-----EGLLVAL 384 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733 D DE++++ ++ + I + RF +S R S + + L + D Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435 Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ S ++ D + ++ + + + + + G + + Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDE 495 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E ++T+S KG+ KR + +FR R G+GI+ T V+ + + LV+ + +D Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 ++ ++ G + R+ EI R KG V + + E + ++ R+ ++ Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606 >gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Haloferax sp gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2] Length = 858 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 369/918 (40%), Positives = 523/918 (56%), Gaps = 82/918 (8%) Query: 1 MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M+ S E + + I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL Sbjct: 1 MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M Q GV N + K + I GE MG YHPHG++AIYD LARMA+D+S+R L++GQGNF Sbjct: 61 YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GSVDGDPPAA RYTE R+ A LLDD+ KDTVDF+ NYD QEP VL + +PN+LVN Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GIAVGM+TNIP HNLGEVVD V +I+NPD + LME I+GPDFPTGA I+ R + Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVARNAV 240 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 AY TGRG + +R + + G +IV+ E+PYQ NKA ++E+IA+ V E +I I Sbjct: 241 HKAYKTGRGRVRVRADYDVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIR 297 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D+RDES+R G RVVIELKRGA A+V+ NQL L+S F V +AL +P+ TL Sbjct: 298 DIRDESERDGIRVVIELKRGAMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKET 356 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L+ ++ R +VV RR++Y L +A DRAH+L G A+ N+D+VV IR S + + A+ L Sbjct: 357 LEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAAL 416 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 D + L T SE Q I+ ++L LT + +I E Sbjct: 417 RGEVEVEVDGEPL--------------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEY 462 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I+ IL +S L +I+ ELL +KDE RRT V ++ D I ED Sbjct: 463 EDVQATIERLETILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEED 522 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VV VS Y+KR+P+S +RAQ RGGKG G +++ D V+ +F+ +TH +L F++ G Sbjct: 523 VVVVVSEDDYIKRMPVSRFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQ 582 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K +++P S ARGK+ +N+L + GE IT ++ + E Y+ T++G + Sbjct: 583 VYQLKAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDI--EGYLTMVTRNGYI 640 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R F I +G IA KLD DE++ VE E D+++ T+ G +RF +R Sbjct: 641 KRTGTDRFQNILSTGIIATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAM- 699 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GVRGI L D V +A + Sbjct: 700 GRSARGVRGIKLEGDDVVAGVAAIDE---------------------------------- 725 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +ILTV+E G+GKRT +R +R+GKG+ ++ N Sbjct: 726 -----------------AHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN- 767 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G + A+ V + D ++++SD+G ++R PV +I R T G+++ + + V SV+ I Sbjct: 768 -GPVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVI 826 Query: 898 R-----ESEIVDEAESTE 910 E+E +D+A+S E Sbjct: 827 PAAMTTEAEELDDADSVE 844 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 95/246 (38%), Gaps = 13/246 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D E + V+ GY+KR ++ G + + D + D+ + T ++ Sbjct: 623 DLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTG--IIATKLDEGDELVDVEVTDGETDLV 680 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + G + + ARG + + L + + + E SW ++ Sbjct: 681 IGTERGMSIRFDEDEVRAMGRSARG---VRGIKLEGDDVVAGVAAIDEAHHSW----ILT 733 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVR 707 T++G +R L + +R+GK + + + + V + + +++ + GQ +R Sbjct: 734 VTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSDEGQILR 793 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 P+ I GRN++G+ + L +GD V S+ ++ A E + + + Sbjct: 794 TPVEDISTV-GRNTMGIIVMDLDEGDAVASVDVIPAAMTTEAEELDDADSVEEDAETDAK 852 Query: 768 DTEEIT 773 + Sbjct: 853 ADADDE 858 >gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 354/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.4 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A + +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834 >gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] Length = 873 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 353/904 (39%), Positives = 523/904 (57%), Gaps = 57/904 (6%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D + + V +++EM++ ++ YA++VI+ RA+PD+RDGLKP RRILF M ++G+ N Sbjct: 17 DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 +K++KCA+I GE MG +HPHG+ AIY L MAQ W++R +LI+GQGNFGS++GDPPAA Sbjct: 77 RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL A L+ D+ KDTVDF PNYD + EP V A +PN++VNG GIAVGMAT Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E +DG VA+ID+P + + L+E I+GPDFPTG VILGR GI N + TGRGS+ Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSL 256 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG H+E+ G + IV+ EIPY VN+A+++EKI ELV +K I +IAD+RDESD Sbjct: 257 KVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDE-NT 315 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A V+ N LYR+T LQ+ F+VNMVA++ +P+ L +L ++ R EV Sbjct: 316 RVVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEV 375 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ LNKA +RA VL G IA++ L E + IIR S N + ARR+L+ R ++ I+ Sbjct: 376 VTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIE 435 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L I + LS Q AIL+LRL +LTGL R+ I E L +IK+ Sbjct: 436 SL--GIPLDGQRMTEGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFR 493 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S ++ I+K ELL +K++ PR+T+I+ ++ ED + + +V+T++H G++ Sbjct: 494 LILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGFI 553 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 KR L YR+QRRGG+G G+ +D DFV LF STH +LFF++ G VY ++ Sbjct: 554 KRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQR 613 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P ++GK + +IL L E I +++ +V T+ + R + Sbjct: 614 VYEIPEKERASKGKNIASILELKPTEEIASMLR------------IVANTQASDGRESS- 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +E I T G+ + P+S R R Sbjct: 661 ---------------------------WDKEGYIFFCTLKGKVKKTPVSEFRNI--RKG- 690 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 G+ IS+ + D++I ++ + + D Sbjct: 691 GITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDVRPMGRNAAGVIGIDLQPG 750 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + + +L VSEKG GKRTS ++R R G+G+ S ++ G +V Sbjct: 751 DEVVGMSIVDHRA---TLLVVSEKGMGKRTSFEEYRKQKRGGQGVITMKTS--DKTGKVV 805 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V D+D++++++ KG +IR+ V ++R R T+GV + +++V S+ RI + Sbjct: 806 KAITVLDDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTSIARIIPDKE 865 Query: 903 VDEA 906 +E Sbjct: 866 DNEE 869 >gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] Length = 841 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 342/903 (37%), Positives = 511/903 (56%), Gaps = 88/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+E I + ++ EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ N Sbjct: 9 EEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMYEMGLRANT 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ G+V+GKYHPHG+A++YDAL R+AQD+SLR ++ QGNFGS+DGDPPAA R Sbjct: 69 PFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ + +L D+ KDTVDF PNYD S QEP VL A +P +L NG GIAVGMATN Sbjct: 129 YTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E+ D AVI+NPDIDL+ LM+ I+GPDFP+GA+I G+ GI +A++TGRG IV Sbjct: 189 MAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIICGQQGIIDAFSTGRGKIV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R IE+ +QI+ T+IPYQVNKA +++KI EL R + I+ +RDESDR+G R Sbjct: 249 QRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDELRRND-LPAISAVRDESDREGIR 307 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+ELK+G+ ++LN L+ T LQS F+VN +AL +P+ +L IL ++ +RE+VV Sbjct: 308 IVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNGRPQLLSLKEILVHYINYREQVV 367 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +RAH+L+GL I + N+DEV+RII+ S + A L + Sbjct: 368 ERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQK---------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+++Q AI++++L RL+ L + I EL L ++I D Sbjct: 418 ----------------AFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKD 461 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ R ++LG++ QE + + R T I + + ED I E++VV +S+ G++ Sbjct: 462 LLADRRKILGVVAQETRELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVVISNKGFI 521 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV YR+Q RGG G G + ++DFV L++ STH V+F SS G Y KV +P Sbjct: 522 KRVVAEEYRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPE 581 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++G ++ ++ + GE I++I+ F E ++ Y+ TKHG ++ L F Sbjct: 582 GSKVSKGSSIKQLIDITDGEEISSIINFTEF---HDDQYLFMVTKHGVTKKVGLPAFRNA 638 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G A+ LD D ++ E T +D++ T G+ +R +R GR S GVRG+ Sbjct: 639 KSRGVRALFLDEGDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAM-GRASRGVRGMK 697 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI + V Sbjct: 698 LLGDDTVIGLLKV----------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + IL ++EKG GK+ + +F R +G + + + LV VN Sbjct: 711 ------DDSRRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKE--KTSYLVNALAVN 762 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEAE 907 D + +++++ +G IR+ VN I R GV + + + +V++ S ++ Sbjct: 763 DENDVVVITMQGQTIRIHVNLISTQGRNASGVRVVALKNPKDSIVALAVTDYSRDEEDGV 822 Query: 908 STE 910 + Sbjct: 823 GED 825 >gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] Length = 818 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 346/850 (40%), Positives = 533/850 (62%), Gaps = 32/850 (3%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + +++ + I I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +G+ Sbjct: 1 MDNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGI 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K + K AR GEVM KYHPHG+++IYDA+ RMAQD+S+R +L++G GNFGS++GD Sbjct: 61 TPDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ A +L D+ K TVDF PN+D +EP VL +R+P +LVNG GIAVG Sbjct: 121 AAMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MAT+IP HNLGEV+D V +ID+ + ++ L +II+GPDFPTGA ILGR GI+ Y TG+ Sbjct: 181 MATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQ 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I IR IE+T +EQ+VV+EIPYQVNK ++EKI ELV+EK I I+++RDE+++ Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VIELKR A+A ++LN+LY++TSLQ S+ M+AL +P++ TL+ IL ++ + Sbjct: 301 EGIRIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +E+V RRT++ L KA +RAH+L GL IA+ N+DE+++IIR S + + Sbjct: 361 KEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQK----------- 409 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 T LSEVQT+AIL+++LARL GL R+ I NE + L +I Sbjct: 410 -----------------LMDTFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKIS 452 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +ILS+ L+ +IK+ELL +K++ RRT+IV+ ++E+ED I R+++ +T++H Sbjct: 453 YYKEILSNEGLLMNVIKEELLEIKEKYADERRTQIVDDDTNIEEEDLIERKNVTITLTHK 512 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR+ + Y+ Q+RGGKG +G+ R+ DFV ++ STH +LFF++ G +K K ++ Sbjct: 513 GYAKRMDVDEYKTQKRGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQ 572 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P + A+G +IN ++L++ E IT ++P E + Y++ T G +++ KLS+F Sbjct: 573 IPEATRTAKGIPIINFVNLDKTEEITAVIPIDEFR---EDKYLIAVTSQGLIKKVKLSEF 629 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 +SG IA+KL D+++++E ++D+L+ T+ G +RF + +R GR S+GV+ Sbjct: 630 ESNRKSGLIAVKLHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRA-TGRQSIGVK 688 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L D++ISM +V + + + D+ Sbjct: 689 AITLKGDDEIISMQLVSKGKELLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVT 748 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E + +E I+ ++ G R + + +R+ KG+R V + I +L V Sbjct: 749 GELTGALIVDEEDDIMLINSDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVM 808 Query: 846 PVNDNDQIIL 855 D++Q+ L Sbjct: 809 NEEDSEQLTL 818 >gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208] gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99] Length = 842 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 350/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ NP+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M ++ + + + + + + + Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 Query: 906 A 906 + Sbjct: 611 S 611 >gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] Length = 849 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 343/844 (40%), Positives = 521/844 (61%), Gaps = 32/844 (3%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++GV + + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD N+D + +EP VL R P +L+NG GIAVGMATN+P Sbjct: 123 EARMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG A IDN DI++D L++ ++ PDFPTG +I G G++ A+ TGRG IV+R Sbjct: 183 PHNLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIYGYDGVREAFKTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G + +E+ RE I+VTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR+G R+V Sbjct: 243 GKAVMEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+LY+YT+LQS FSVN +AL +P+ L ++ FV R EVV R Sbjct: 302 YILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVHGRPQLLNLKDMIHYFVEHRHEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA +RAH+L GL IA N+DEV+ IIR S N E AR L++R Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E + + I++ DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +++SR + IIK+EL +KD+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ANKSRRMNIIKEELEVIKDKYGDERRSMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKRQNRGGVGQKGSATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ + +++ + DE NN YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEKDDKVKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + ++L K G+ +RF R GRN+ GVRGI L Sbjct: 636 TNGINAITIKDGDELLEAKLTTGNSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGIRL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V +++ + +K S E Sbjct: 695 ADDNDEVVGMVAVNDMESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLV 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + ++ ++ +++ G R + D R+ R+ +G+R ++ + I A+ V Sbjct: 755 AIKNVTDEDG-LMIINKSGIAIRMAVADLRVMGRATQGVRLINIKGKDSIAAVAKVRNEQ 813 Query: 849 DNDQ 852 ++ Sbjct: 814 QEEE 817 Score = 64.4 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 101/254 (39%), Gaps = 13/254 (5%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 + + V+ + G VK+ PL Y R G + + ++D D + + + + ++ V+ Sbjct: 606 EEYINNHYVIMATKKGQVKKTPLEQYSRPRTNG--INAITIKDGDELLEAKLTTGNSQVM 663 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 G + + P R + + + L M D S ++ Sbjct: 664 LAVKSGKAIR---FEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESN----ILV 716 Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVR 707 +++G +R+ L D+ G + + + ++++++ T E+ +++ K G +R Sbjct: 717 VSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVAIKNVTDEDGLMIINKSGIAIR 776 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 ++ +RV GR + GVR I++ D + ++A V + + + + ++ Sbjct: 777 MAVADLRVM-GRATQGVRLINIKGKDSIAAVAKVRNEQQEEEAIEGAENLENTEQTENGT 835 Query: 768 DTEEITSLKNDSSV 781 + + + Sbjct: 836 AVDMNNEGDSKTEE 849 >gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168] Length = 817 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 336/896 (37%), Positives = 512/896 (57%), Gaps = 86/896 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + VSI EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + G+ ++ Sbjct: 6 TPEGGTLIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSG 65 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K KCA + G+V+G+YHPHG+A++YDA+ R+ Q +S+R + I+ QGNFG +DG P AA R Sbjct: 66 KTRKCATVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYR 125 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ A ++ D+ K+TVDF PN+D + QEP VL A++P +L NG GIAVGMATN Sbjct: 126 YTEAKMSTVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATN 185 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 +P HNL E+ A IDNPD+ L+ L I++GPDFPTG +I GR GIK AY TGRG I+ Sbjct: 186 MPPHNLREICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIFGRRGIKQAYKTGRGKIL 245 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IRG +IE RE I+ TEIPYQV + ++I EL R+K I I + D S R Sbjct: 246 IRGRFNIEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVR 305 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRGA A V+LNQL+ T+LQS F V +AL +PE TL +++ FV R+EVV Sbjct: 306 IVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVKGRPEILTLKDLIRYFVEHRQEVV 365 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +RAH+L L +A+ N+DEV+RIIR S + +TA+ LM+R Sbjct: 366 TRRTRYDLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMER--------- 416 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +VQ +AI++++L RLT L +D+R EL L I D Sbjct: 417 -----------------FEFDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKD 459 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L +IK+E S++++ RRT IV + + + ED I E+MV+ +S+LGY+ Sbjct: 460 LLAHPEKILALIKEETESLREKYGDDRRTDIVADEVEQINIEDLIKEEEMVILISNLGYI 519 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL+ Y+AQ RGGKG + + ++DF+ +FI STH ++F ++ G Y KV +P Sbjct: 520 KRIPLTAYKAQGRGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPE 579 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 +RG + +L+++ E ITT++ E + Y+ AT G V++ + S F Sbjct: 580 AGRNSRGAHIKGLLTVSPNEEITTVVSLKEFS---DEQYLFMATAAGVVKKVQTSQFSNA 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA++LD D++++ ++++L ++ GQ +R +++R GR GV G+ Sbjct: 637 KTRGIIAIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRPM-GRAGRGVGGLK 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA+GD++ V Sbjct: 696 LAQGDELAGALRVES--------------------------------------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++ ++EKGFGKR +F R G R VS ++ G +V Sbjct: 711 --------DACMMLLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVS--DKTGEIVGTINAA 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D+D+I+ ++ +G +RV N + R+ GV +F+ + V+ ++R+ + D Sbjct: 761 DSDEIVCITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDMVIGLDRVANEDKED 816 >gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R] gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909] gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R] gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909] gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] Length = 819 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + IV + Y K A G + N ++ G ++ Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ +++ G RT+ + + RS G++ + ++ +V V V Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806 Query: 850 NDQ 852 + Sbjct: 807 EIE 809 Score = 91.0 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%) Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L++ +G +I ++ ++ +V T+ + + + + + L Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAGARAHIL-----EGLLVAL 384 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733 D DE++++ ++ + I + RF +S R S + + L + D Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435 Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ S ++ D + ++ + + + + + G + + Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 495 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E ++T+S KG+ KR + +FR R G+GI+ T V+ + + LV+ + +D Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 ++ ++ G + R+ EI R KG V + + E + ++ R+ ++ Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606 >gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 358/938 (38%), Positives = 551/938 (58%), Gaps = 123/938 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 IR A R T GV I +++ VVS+ + + E ++ Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852 >gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] Length = 861 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 379/861 (44%), Positives = 540/861 (62%), Gaps = 21/861 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+++ +S E V+I EM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSKYTENSTN-FESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV Sbjct: 60 DVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K +H LL DL KDTVDF NYDGS EP VL AR PN+L NG Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++ C+ I+N DI +D L+EI+ GPDFPT +I G +GI+ A Sbjct: 180 GIAVGMATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGIINGTSGIRQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I +R VSHIE ++ I+VTE+PYQVNKA ++ KIAELV++KRI I LR Sbjct: 240 YETGKGKIYLRCVSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G +VIEL+RG +VILN LY+ T +Q++F +NMVA++ P+ TL IL+A Sbjct: 298 DESDKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKGIPKLMTLKDILEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+A R +VV RR+ + LNKAR+R H+L GL++A+ N+D +V +I+ +P+ AR L+ + Sbjct: 358 FIAHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAK 417 Query: 421 SWNASDIKDLIDLIDDSSYTIG---------SDGTMYLSEVQTRAILELRLARLTGLGRD 471 +W +S I +L+ D + + G LS+ Q +AIL+L+L RLTG +D Sbjct: 418 TWRSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKD 477 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I +E N L IK LDIL + RL+ +I +EL+ ++ R T+I+E +D+ ED Sbjct: 478 KIFDEFNELLERIKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLED 537 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +E+ VVT+SH GYVK LS Y+AQ RGGKG+S ++DEDFV LFI ++H VL Sbjct: 538 LIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLC 597 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G VY KV+ LP+ S +RGK +IN+L L + E I I+P + + N +V A Sbjct: 598 FSSFGKVYWLKVYDLPMASRISRGKPIINLLPLEKKEIINAILPILKFD---ENHFVFMA 654 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G ++ L++F + + G IA++L + D+++ VE + E+DI+L + G+ +RF S Sbjct: 655 TSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKES 714 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR ++GVRGI L GD+V+S+ + + Sbjct: 715 DVR-IVGRTAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEYRVQSRGG 773 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + +S Q E + +S KG R + D I R+ +G+ + Sbjct: 774 SGVISIKTSDRNGKIIGAIQVTNEDEMML--ISNKGILVRARAADVSIIGRNTQGVILIN 831 Query: 832 VSKINEIGALVAVFPVNDNDQ 852 +SK + LV++ V + + Sbjct: 832 ISKDEK---LVSIAKVVETED 849 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V + G K+ L+ + R+GG + +R+ D + + I S ++ F Sbjct: 645 FDENHFVFMATSSGTCKKTALTNFSKPRKGG--IIAIELRNNDQLIGVEITSGEHDIMLF 702 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S+ G + K + I A G I ++ ++ + + V+ AT Sbjct: 703 SANGKSIRFKESDVRIVGRTAIGVRGIKLVDGDK---------VVSLIVTNQDSPVLTAT 753 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFP 709 + G +R L+++ +R G + + + D +I+ T E++++L + G VR Sbjct: 754 EKGFGKRTHLNEYRVQSRGGSGVISIKTSDRNGKIIGAIQVTNEDEMMLISNKGILVRAR 813 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + + GRN+ GV I+++K ++++S+A V+ + D E Sbjct: 814 AADV-SIIGRNTQGVILINISKDEKLVSIAKVVETEDDKSESKS 856 >gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD] Length = 877 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 323/891 (36%), Positives = 519/891 (58%), Gaps = 85/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL M ++G+ + Sbjct: 67 ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR LI+G GNFGS+DGD AA R Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G GIAVGMAT Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + NPDI + L + + PDFPTGA ILG +GI+ AY TGRG+ V Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE S + +I+V EIPY+V K ++EK+ +LVR+K+I + D+RDE++R+G R Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV ++K+G S ++ILNQLY+ T LQ +++NM+AL P+ L IL ++ +EEVV Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R ++ L KA++R ++L+G+ IAV N+DEV++IIR S + A+ L QR Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E QT+AI+++RL RLT L + + E+ L EI+ Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 I++S +L+ +I + + RRT IV + + DED I + +V+T++ Y+ Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR Q RGG G S +D + ++ + STH+ +L +S +++ + ++P Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN++ + + E I +++ ++ +NLY+V +K G +++ LS + +I Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIVSLL-VTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRI 699 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +++G IA+ L DE+L+ T+E++I++ G+ VRF R + R S+GV+GI+ Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + + V+ + Sbjct: 759 LGENEVVVGAS------------------------------------------------- 769 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + + ++G+GK+T ++R + R GKG+ + G L + V Sbjct: 770 ----STDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKT---EKAGNLAFISCVK 822 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++I++++ +G +IR + + SR TKGV + + + + SV + + Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEK 873 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 105/273 (38%), Gaps = 9/273 (3%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 +++ V+ TK+ ++R L ++ NR +G D + ++ + Sbjct: 559 IVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTH 618 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750 +D+L+ T + R I + + + GV I+L K + ++S+ + D + Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLS-KQAKGVPFINLIPIEKDEDIVSLLVTQENYEDDNL 677 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 + + + ++ + I+ + E + +E I+ + G Sbjct: 678 YLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSV 737 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 R + DFR +R G++ + + +V + + ++ +G + ++E Sbjct: 738 RFDNQDFRSLSRKSMGVKGITLGENEV---VVGASSTDQGSTVFVLGQEGYGKKTHIDEY 794 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R +R KGV+ T K + + ++ E + Sbjct: 795 RKTARGGKGVITLKTEKAGNLAFISCVKGDEEI 827 >gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 841 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 351/836 (41%), Positives = 513/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ ++PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDNYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP + IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+VI M ++ + + + + + + + Sbjct: 693 LREGDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 Score = 85.2 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 99/240 (41%), Gaps = 24/240 (10%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 >gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] Length = 877 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 323/891 (36%), Positives = 519/891 (58%), Gaps = 85/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL M ++G+ + Sbjct: 67 ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR LI+G GNFGS+DGD AA R Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G GIAVGMAT Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + NPDI + L + + PDFPTGA ILG +GI+ AY TGRG+ V Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE S + +I+V EIPY+V K ++EK+ +LVR+K+I + D+RDE++R+G R Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV ++K+G S ++ILNQLY+ T LQ +++NM+AL P+ L IL ++ +EEVV Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R ++ L KA++R ++L+G+ IAV N+DEV++IIR S + A+ L QR Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E QT+AI+++RL RLT L + + E+ L EI+ Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 I++S +L+ +I + + RRT IV + + DED I + +V+T++ Y+ Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR Q RGG G S +D + ++ + STH+ +L +S +++ + ++P Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN++ + + E I +++ ++ +NLY+V +K G +++ LS + +I Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIISLL-VTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRI 699 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +++G IA+ L DE+L+ T+E++I++ G+ VRF R + R S+GV+GI+ Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + + V+ + Sbjct: 759 LGENEVVVGAS------------------------------------------------- 769 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + + ++G+GK+T ++R + R GKG+ + G L + V Sbjct: 770 ----STDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKT---EKAGNLAFISCVK 822 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++I++++ +G +IR + + SR TKGV + + + + SV + + Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEK 873 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 105/273 (38%), Gaps = 9/273 (3%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 +++ V+ TK+ ++R L ++ NR +G D + ++ + Sbjct: 559 IVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTH 618 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750 +D+L+ T + R I + + + GV I+L K + +IS+ + D + Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLS-KQAKGVPFINLIPIEKDEDIISLLVTQENYEDDNL 677 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 + + + ++ + I+ + E + +E I+ + G Sbjct: 678 YLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSV 737 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 R + DFR +R G++ + + +V + + ++ +G + ++E Sbjct: 738 RFDNQDFRSLSRKSMGVKGITLGENEV---VVGASSTDQGSTVFVLGQEGYGKKTHIDEY 794 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 R +R KGV+ T K + + ++ E + Sbjct: 795 RKTARGGKGVITLKTEKAGNLAFISCVKGDEEI 827 >gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus] gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus] Length = 886 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 336/895 (37%), Positives = 496/895 (55%), Gaps = 94/895 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 I V + EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M G ++ + Sbjct: 53 HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 112 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR L GQGNFGS D AA RYTE Sbjct: 113 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 172 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ A ++ D+ +DTVDF+ NYDG EP +L +R+PN+LVNG GIAVGMATNIP Sbjct: 173 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 232 Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 HNL EV G ++ +PD + L+AL+E I+GPDFPTGA +LG GI AY TGRGSI Sbjct: 233 HNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 292 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307 +R V +E+ R +VVTE+PYQVN + KIAELV++ ++ +AD+RDE S R G Sbjct: 293 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSGRTG 351 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI LKR A A V+LN LY++T LQ F NM+A+ P L G + A+V + + Sbjct: 352 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 411 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+VRRT+Y LN+A RAH+L G A+ LD+V+ +IR S E AR LM+ Sbjct: 412 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 463 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + + E+Q AILE++L RL L R I+++ L I E Sbjct: 464 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 505 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 IL++ + II EL + D+ RRT I+ DM ED I E+MVVTV+ G Sbjct: 506 KHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 565 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR + YR+Q RGGKG G +R +D V F+ +TH +LF + G VY+ K + L Sbjct: 566 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 625 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 A+G+ + N+L++ E I ++ + + Y+V AT+ G +++ L+++ Sbjct: 626 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQV---AQYLVLATRDGLMKKTALTEYD 682 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724 G IA+ L D ++S +++D+LL ++ G +RF +R GR++ GV Sbjct: 683 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGV 741 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +G++ D ++S ++V Sbjct: 742 KGMTFRGDDTLLSASVV------------------------------------------- 758 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++ V+E GF KRT++ +R+ NR G GI+ + + G L Sbjct: 759 ----------GEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGA 806 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V + D+I++V G ++R V E+ R T GVV A D+R++S+ + E Sbjct: 807 LIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSE 861 >gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] Length = 841 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 338/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +ID+ + ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R +++IE + +I+VTE+P+ VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL G +P+ L+ +L ++ Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVGNQPKVMNLLEMLNYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV++IIR S N + A++EL++R Sbjct: 362 HQEDVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSEVQ +AI+++RL LTGL R+ I E L + Sbjct: 419 -----------------------FGLSEVQAQAIVDMRLRALTGLEREKIEAEYAELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ + LLG+IK+E+L + ++ RRTRI D+ ED I RE++V+T++ Sbjct: 456 IEEFKAILADKKLLLGVIKKEILVISEKYGDDRRTRIGYDEFDISMEDLIPRENVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ ++D++ +LF+ ++H ++FF++ G VY+ K Sbjct: 516 KLGYIKRMTMDTFKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT I+P E E Y+ AT+ G V++ + Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYE---EGKYLFMATEKGLVKKTPIQ 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L D ++ V+ DILL T+ G C+RF + +R GR S+G Sbjct: 633 DYANVRKTGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L D VI M M + + Sbjct: 692 VRGMNLTDNDVVIGMQTASQGTDLLIVSEKGMGKRTNM--DEFTRQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ I+ ++ +G R D + R G++ ++ + +++ ++ Sbjct: 750 KTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVAK 809 Query: 844 VFPVN---DNDQI 853 V + D +Q+ Sbjct: 810 VRKASAEIDGEQV 822 >gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b F2365] gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459] gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816] gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220] Length = 842 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 350/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M ++ + + + + + + + Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 Query: 906 A 906 + Sbjct: 611 S 611 >gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988] gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561] gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S] gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161] gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818] gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003] gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes] gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818] Length = 842 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 349/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M ++ + + + + + + + Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 Query: 906 A 906 + Sbjct: 611 S 611 >gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 842 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 350/836 (41%), Positives = 512/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP + IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+VI M ++ + + + + + + + Sbjct: 693 LREGDEVIGMEVLEDNEKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 Query: 906 A 906 + Sbjct: 611 S 611 >gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 834 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 354/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEAIEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.0 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 65.2 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 ++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 IEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A + + EE Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDMTPNNDEE 834 >gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] Length = 828 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 332/832 (39%), Positives = 510/832 (61%), Gaps = 37/832 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + + V + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ Sbjct: 2 DENTIFDKVHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 DKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + LL D+GKDTV+F PN+D + +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVI-----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 TNIP HNL EV++ V +I N D++ L++I++GPDFPTGA ILG+ GI AY Sbjct: 182 TNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATILGKAGISQAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V+ IE + +++IVVTE+PY VNKA +++KIAELV++K++ I ++RDE Sbjct: 242 TGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+ IEL+R A+A+V+LN+L+++T +Q F V M++L +P+ L +L ++ Sbjct: 302 SDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNEPKILNLFDMLNYYL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +++VV RRTKY LNKA +RAH+L GL IA N+DEV++IIR + N A+ +LM+R Sbjct: 362 EHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLMER-- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L++ Q +AI+++RL L GL R + E N L Sbjct: 420 ------------------------FALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMA 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E IL+ LLG+IK EL+ ++D+ RRT I + D+ ED I RE+ ++T+ Sbjct: 456 KITELKAILADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPRENTIITM 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LGY+KR+ + +++Q RGGKG G+ DED++ +LF+ ++H ++FF+++G VY+ K Sbjct: 516 TKLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG A++N++ L E+IT ++P E + + Y+ ATK G V+++ + Sbjct: 576 AYEIPESSRTARGTAIVNLIQLQPEEKITAVIPINEYK---EDHYLFMATKSGVVKKSPI 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++ I ++G +A+ L DE++ V+ + D+ L TK GQC+RF + +R GR ++ Sbjct: 633 MEYANIRKTGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSI-GRTAM 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI+L D+VI M + +A M +A + Sbjct: 692 GVRGINLDGDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQH--RGGKGIRCYKIT 749 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + +E ++ ++ +G R + R+ G++ ++ Sbjct: 750 EKTGDVVGVKAVDEENEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDD 801 >gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262] gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262] Length = 842 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 349/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M ++ + + + + + + + Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++TVS G R + RS G++ + + ++ + V Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ D I+ + ++ +D+ K G +F +S + + + + L Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + +++ +V + + + R + + + + G++ Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E+ +T++++G+ KR +R R G+GI+ + + + LVA + Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 +D ++ ++ G + R E+ R KG+ I + E+V +V I SE D+ Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610 Query: 906 A 906 + Sbjct: 611 S 611 >gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 354/843 (41%), Positives = 528/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D +++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.4 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A + +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834 >gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] Length = 834 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 339/852 (39%), Positives = 524/852 (61%), Gaps = 38/852 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNIFDKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ K+TVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+DG V +IDN D L+ ++++I+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTHGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D S Sbjct: 242 GRGKIRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ I+LK+ A+A+V+LNQLY++T LQ F V M+AL +P+ L+ +LK ++A Sbjct: 302 NREGMRICIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQPKIMNLLEMLKHYLA 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA++RAH+L GL A+ N+DEV+RIIR + P+TA+ +LM+R Sbjct: 362 HQEEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L+EVQ +AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FGLTEVQAQAIIDMRLRALTGLEREKLEAEYAELMEK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I++ IL+ R+ LL ++++E+L + ++ RRT+I D+ ED I +++ V+T++ Sbjct: 456 IRKYKAILADRNLLLRVVREEILLISEKYGDDRRTQIGFDEFDISMEDLIPKQNTVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +R+Q RGGKG G+ + D++ +L + +TH ++FF++ G VY+ K Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L GE+IT ++P + E Y++ TK G V+R + Sbjct: 576 YEIPEAGRTARGTAIINLLQLAPGEKITAVIPLNKFE---EGKYLMMVTKKGLVKRTPIL 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ + I+L TK G C+RF + +R GR S+G Sbjct: 633 DYEHVRKTGLAAIVLRDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D+V+ M + D M ++ + + Sbjct: 692 VRGMNLSDSDEVVGMQLDTQGDCLLFVSEKGMGKRTSISEFTCQN--RGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +E ++ ++ +G R D + R G++ ++ + ++ ++ Sbjct: 750 KTGNVIGVKAVNEENEVMMITTEGIIIRLQCSDISMLGRITSGVKLINLDEGVKVASVAK 809 Query: 844 VFP-VNDNDQII 854 V V ++ Q++ Sbjct: 810 VREKVEESAQVL 821 >gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy] gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy] Length = 855 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 355/906 (39%), Positives = 516/906 (56%), Gaps = 90/906 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E E SV +++EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +MG+ N Sbjct: 2 EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + KCARI G+V+GKYHPHG+A++YDAL R+AQD+SLR ++ QGNFGS+DGDP AA Sbjct: 62 TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ + +L D+ K+TV+F PNYD S QEP VL A +P +L NG GIAVGMAT Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+ HNL E+ D AVIDNPDI +D LME I+GPDFP+G +I G GIK+A+ TGRG I Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIICGLQGIKDAFMTGRGKI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R V IE + D +QIV TEIPYQVNKA +++KI +L ++ I I+ +RDESDR+G Sbjct: 242 VVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGI 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ELK GA V+LNQL+ T+LQS F+VN +AL +P+ TL +L ++ REEV Sbjct: 302 RIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALVQGRPQMLTLKDMLVYYIRHREEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA++RAH+L GL I + N+DEV++II+ S + A L+ R Sbjct: 362 VTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSR-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L ++Q +AI++++L RL+ L I EL L +I Sbjct: 414 ------------------FGLDQIQAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQ 455 Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHL 545 ++LS ++L +++ E+ ++ L R T+I L ED I E +VV +S+ Sbjct: 456 EVLSDEGKILKLVQSEVRALPSSLVPKDRRLTKIAREELGQSTLEDFIKDEQVVVLISNK 515 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G+ KR+ Y A R GKG ++D DFV +F+ TH V+F ++ G Y KV+ Sbjct: 516 GFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVFE 575 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S A+G ++ NIL L E+IT+I+ F E + Y++ AT+ G V++ L++F Sbjct: 576 IPEASKTAKGTSIKNILQLETTEKITSIISFKEFS---EDHYLMMATRDGVVKKVSLNNF 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+ LD DE+LS + + ++++L TKLG+ +RF +R GR S GVR Sbjct: 633 VNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGLRFRQDNVRAM-GRASRGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L DQV + V Sbjct: 692 GIRLLANDQVAGLLKVDST----------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + IL ++E G GK+ + F + R +G + + + +V V Sbjct: 711 ------------KRILMITENGQGKQVNFDSFTVHGRGTQGQKIYRL--GGKASFIVGVL 756 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVD 904 V+D + ++ + G +RV VN I I R GV + S + +V++ E + + Sbjct: 757 SVDDENDVVCATLMGQTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIAS-TERDDEE 815 Query: 905 EAESTE 910 E E E Sbjct: 816 EVEIPE 821 >gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 352/843 (41%), Positives = 527/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ MAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+ + I H + Y K A G + N + G ++ Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806 Query: 850 NDQ 852 +D+ Sbjct: 807 DDE 809 Score = 91.4 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD DE++++ ++ + + + RF +S R S + + L Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432 Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D++ S ++ D + ++ + + + + + + G + Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ + Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +D ++ ++ G + R+ EI R KG V + E + ++ R+ E Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605 Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 88/233 (37%), Gaps = 17/233 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + + ++ + G+ + Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G +++ ++ ++ V+ T++G +R + Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +++ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 R ++GV+ + L ++++ A+V D + + A +E Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834 >gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 895 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 336/895 (37%), Positives = 496/895 (55%), Gaps = 94/895 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 I V + EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M G ++ + Sbjct: 62 HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 121 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR L GQGNFGS D AA RYTE Sbjct: 122 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 181 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ A ++ D+ +DTVDF+ NYDG EP +L +R+PN+LVNG GIAVGMATNIP Sbjct: 182 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 241 Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 HNL EV G ++ +PD + L+AL+E I+GPDFPTGA +LG GI AY TGRGSI Sbjct: 242 HNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 301 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307 +R V +E+ R +VVTE+PYQVN + KIAELV++ ++ +AD+RDE S R G Sbjct: 302 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSGRTG 360 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI LKR A A V+LN LY++T LQ F NM+A+ P L G + A+V + + Sbjct: 361 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 420 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+VRRT+Y LN+A RAH+L G A+ LD+V+ +IR S E AR LM+ Sbjct: 421 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 472 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + + E+Q AILE++L RL L R I+++ L I E Sbjct: 473 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 514 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546 IL++ + II EL + D+ RRT I+ DM ED I E+MVVTV+ G Sbjct: 515 NHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 574 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR + YR+Q RGGKG G +R +D V F+ +TH +LF + G VY+ K + L Sbjct: 575 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 634 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 A+G+ + N+L++ E I ++ + + Y+V AT+ G +++ L+++ Sbjct: 635 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQV---AQYLVLATRDGLMKKTALTEYD 691 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724 G IA+ L D ++S +++D+LL ++ G +RF +R GR++ GV Sbjct: 692 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGV 750 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +G++ D ++S ++V Sbjct: 751 KGMTFRGDDTLLSASVV------------------------------------------- 767 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ ++ V+E GF KRT++ +R+ NR G GI+ + + G L Sbjct: 768 ----------GEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGA 815 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V + D+I++V G ++R V E+ R T GVV A D+R++S+ + E Sbjct: 816 LIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSE 870 >gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma] Length = 846 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 328/909 (36%), Positives = 527/909 (57%), Gaps = 86/909 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EH + + V I +E++ S+L+YA++VI+ RA+PD+RDG+KPV RRIL+ M Sbjct: 15 EHSSLDSKINFNRVQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMND 74 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +G+ +++ K A + G VMG+ HPHG+ +IY+A+ RMAQD++ R LI G GNFGS+DG Sbjct: 75 LGLSNQERFKKAAAVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDG 134 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ K A L+ ++ ++TVDF YDG+ +EP VL A +PN+LVNG GI Sbjct: 135 DSAAAMRYTEARMSKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGI 194 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HN EV++ +A I+N +I+ LM+ ++GPDFPTG ILG +KN Y Sbjct: 195 AVGMATNIPPHNFKEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEILGAENLKNIYN 254 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TG+G I IR + I + ++ IV+TEIP+Q+ K++++E IA L +EK I I DLRDE Sbjct: 255 TGKGRIFIRSKTQIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDE 314 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+RQG ++VI+LKR + V+LN LY+ + +Q F+ NM+AL P+ L +LK F Sbjct: 315 SNRQGIKLVIDLKRDVNPHVVLNNLYKNSQVQVSFNFNMIALVKGVPKLVNLKQMLKEFF 374 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FR V+ R+ ++ L+KA + H++ L IA+ ++D VVR+I+ S N + A+ +LM++ Sbjct: 375 DFRINVIQRQKQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEK-- 432 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L E+Q++ ILE+ L ++T L + I+ E L + Sbjct: 433 ------------------------YQLDELQSKVILEMSLQKITNLEIEKIKQEDTELSL 468 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVV 540 +I EC +I++S I+KQ+LL+++ RRT I D++ + I +E +++ Sbjct: 469 KISECQNIINSILLKEQILKQDLLNLQKNFQDGRRTVINMENQDLDIDKSSLIEKEKILI 528 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR+ L Y+ Q +GGKG G+ M +DFV I STH LFF++ G VY+ Sbjct: 529 TITHKGYIKRLNLDTYKKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQ 588 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + + S A+G L+N++ + +GE +TT+ E + + Y+V TK G ++RN Sbjct: 589 IKGYEIASYSRHAKGIPLVNLIPMAKGEFLTTLTSVTEFNKNKD--YLVLVTKKGFIKRN 646 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ ++ I +GKIA L DE+L+V + + DI+L + G+ +R ++IR R Sbjct: 647 RIQEYANIRSNGKIAFALKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRT-TNRK 705 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GV G+ + K +Q++ A+V H Sbjct: 706 SSGVIGMRMDKDEQIVGAAVVCHP------------------------------------ 729 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 EQ IL V+E G+GK+T + ++ R GKG++ ++ ++ G Sbjct: 730 ----------------EQDILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKIT--DKKGH 771 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRE 899 LVA+ + N+++IL+S G +IR+ N++ S+ T+G +F D++++++ +++ Sbjct: 772 LVALKTIFPNEELILISQCGQVIRIEANKVSTTKSKNTEGNRLFKLKDDDKLLNLVVVQK 831 Query: 900 SEIVDEAES 908 E D + Sbjct: 832 QEDDDSIDE 840 >gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] Length = 809 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 348/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIIDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LD+V+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPDRVITIIKEEMDEIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQRRGG+G G + D+DFV +L +TH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ ++ + N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN--YLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++DI++ TK G VRF S++R + R++ GVRG++L Sbjct: 634 NGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + I + Y K A G + N + G ++ Sbjct: 693 EGDEVVGASRITNDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKNGKLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ I+ +++ G RT+ D + R+ G++ + + ++ + V Sbjct: 750 GLVTVNGDEDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDE---NAKIMTLALVQA 806 Query: 850 NDQ 852 ++ Sbjct: 807 EEE 809 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + + E ++ V+ +G KR Sbjct: 563 VYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTIISEKGNDETENYLFFVTRQGVVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G++A ++ + L+ V N +D II+ + G +R + Sbjct: 623 TKESEFSNIRQN----GLKALNLKE---SDELINVIRTNGDDDIIIGTKTGYSVRFNESS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +R SR+ GV + + + VV RI + V Sbjct: 676 VRSMSRSATGVRGVNLREGDEVVGASRITNDQEV 709 Score = 96.0 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 110/265 (41%), Gaps = 28/265 (10%) Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 VRR + R+ + + LD D+++S+ ++ + + + RF +S Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETD---VIAQSELMSRFNLSE- 415 Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766 R S + + L + +++ + ++ D + ++ + + Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMD 470 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 + + + G + ++L +E ++T+S KG+ KR + +FR R G+G Sbjct: 471 EIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRG 530 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883 ++ T V+ + + LV+ N +D + +++KG + R+ EI R KG V + Sbjct: 531 VQGTGVNDDDFVRELVST---NTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587 Query: 884 STAKDERVVSVERIRESEIVDEAES 908 + E V + I + DE E+ Sbjct: 588 KLDEGETVQT---IISEKGNDETEN 609 >gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 857 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 338/852 (39%), Positives = 527/852 (61%), Gaps = 41/852 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M++SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNIFDKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EVVD V +IDN + ++ +++I++GPDFPTGA+ILGR GI+ AY T Sbjct: 182 NIPPHNLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMILGRRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+PY VNKA ++ KIAELVR+K+I I DL D S Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY----KPERFTLIGILK 359 R+G R+ I+L++ A+A+V+LN LY++T LQ F VNM++L +P+ L +L+ Sbjct: 302 SREGMRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLE 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++A +E+VV RRTKY LNKAR+RAH+L GL A+ N+DEV+RIIR S N + A++ELM Sbjct: 362 YYLAHQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMD 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R L++VQ +AI+++RL LTGL R+ + E Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAD 455 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ RS LL +I++E+L++ ++ R+T I + D+ ED I RE+ V Sbjct: 456 LMEKIRKYEAILADRSLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTV 515 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 +T++ LGY+KR+ + +R+Q RGG+G G+ ++D++ +L + +TH ++FF++ G VY Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVY 575 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P ARG A+IN+L L GE IT ++P + E + Y++ ATK+G V++ Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGECITAVIPLRKFE---DGHYLMMATKNGLVKK 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + ++ + ++G A+ L DE++ V+ + DI+L TK G C+RF + +R GR Sbjct: 633 TPIKEYANVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVRS-TGR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRG+++ GD+V++M + D M ++ + Sbjct: 692 TSMGVRGMNIDDGDEVVAMQLNSQGDCLLIVSANGMGKRTSMGEFTCQN--RGGKGVKCY 749 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + ++ ++ ++ +G R + D I R G++ ++++ + Sbjct: 750 KITEKTGDVIGARAVNEDNEVMLITTEGIIIRIACADISILGRITSGVKLINLTEGVTVA 809 Query: 840 ALVAVFPVNDND 851 ++ V + D Sbjct: 810 SVAKVRDKEEKD 821 Score = 71.7 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 93/255 (36%), Gaps = 19/255 (7%) Query: 536 EDMVVTV--SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED + + G VK+ P+ Y R+ G + + +RD+D + ++ + ++ + Sbjct: 616 EDGHYLMMATKNGLVKKTPIKEYANVRKNG--LAAITLRDDDELIEVKLTDDKKDIILVT 673 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + K + + G +N I + + ++ + Sbjct: 674 KDGMCIRFKETDVRSTGRTSMGVRGMN---------IDDGDEVVAMQLNSQGDCLLIVSA 724 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709 +G +R + +F G +K E ++ ++N+++L T G +R Sbjct: 725 NGMGKRTSMGEF-TCQNRGGKGVKCYKITEKTGDVIGARAVNEDNEVMLITTEGIIIRIA 783 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + I GR + GV+ I+L +G V S+A V + ++ D Sbjct: 784 CADI-SILGRITSGVKLINLTEGVTVASVAKVRDKEEKDTNAQQAAVEITDSAETEESDQ 842 Query: 770 EEITSLKNDSSVEGN 784 ++++ E Sbjct: 843 PTDQETQDENRGEEE 857 >gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] Length = 828 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 343/841 (40%), Positives = 523/841 (62%), Gaps = 35/841 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R LL++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ++ + + + + Sbjct: 693 EDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLV 752 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ I+ ++ KG RT+ + + R+ G++ + + +V V Sbjct: 753 TVDGTED--IMVITNKGVIIRTNVANISQTGRATLGVKIMKL---DADAKIVTFTLVQPE 807 Query: 851 D 851 D Sbjct: 808 D 808 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751 ++ + G R R R GV+G + D V + D R Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811 + +K + I +L E + ++ + + +++G KR Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622 Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 T +F N G+RA + + L+ V + D II+ + G +R Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 IR R+ GV +D+RVV RI++++ V Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VKR +S + R+ G + +++ D + ++ + S ++ + G+ + Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + A G + + ++ +N V+ T++G +R Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +D+ + + ++ + T DI++ T G +R ++ I G Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R ++GV+ + L ++++ +V D+ E ++ ++ + Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826 >gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] Length = 853 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 339/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V + +N + ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSEVQ +AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+ Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 ++GY+KR+ + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT +P E E + Y+ ATK G V++ + Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D++ + ++G A+ L D ++ V+ DILL TK GQC+RF +R GR S+G Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D++I M + M ++ + Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +E I+ ++ +G R D R G++ ++ + + ++ Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAK 809 Query: 844 VFPVN---DNDQI 853 V + D +++ Sbjct: 810 VRTASAEIDGEEV 822 >gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] Length = 846 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 345/837 (41%), Positives = 522/837 (62%), Gaps = 32/837 (3%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y Sbjct: 3 EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQ+WS+R +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D S EPVV+ R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG VA ID+ DI++D LM+ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E+ + +E I+VTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR G R+V Sbjct: 243 AKSSLEEVN-GKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +LKR A +++LN L+++T+LQS FSVN +AL +PE L I+ FV R EVVVR Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGRPEMLNLKDIIYHFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA DRAH+L GL IA N+DEV+ +IR S N E AR++L+ R Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D +R E + + IK+ DIL Sbjct: 411 ---------------FELSELQARAIVEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + +IK ELL VK++ RR+ I D+ ED I E +++T+SH GY+KR Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ G R+EDF+ LF + H +LFF+ G + +V+ +P GS Sbjct: 516 SLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +R+ + + DE NN +V+ ATK G V++ L + + Sbjct: 576 SSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L K G+ +RF R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V +++ + +K S E + Sbjct: 695 ADDNDEVVGMISVDDMESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLV 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + + ++ +++ G R D R+ R+ +G+R ++ + I A+ V Sbjct: 755 AIKNVTDDDD-LMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVAKVL 810 Score = 75.6 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 58/452 (12%), Positives = 138/452 (30%), Gaps = 51/452 (11%) Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 F + R + + L E++ I+ + + MQ Sbjct: 410 RFELSELQARAIVEMRLRQLTGLEQDKLRAEYD---EIIETIKDLKDILARKERRMQ--V 464 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILELRLARLTGLGRDDIRNELNSL 480 ++ ++ + D + LS + + ++ + R + Sbjct: 465 IKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRTSLNEYKRQN 524 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME------------ 528 + + + L + + + E Sbjct: 525 RGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQN 584 Query: 529 -------------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 ++ V V+ + G VK+ L Y R G + + Sbjct: 585 LINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPRTNG--INAI 642 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 ++++D + + + + + V+ G + + P R + + ++L Sbjct: 643 TIKEDDELLEAKLTTGDSQVMLAVKSGKAIR---FEEGKTRPMGRNASGVRGITLADDND 699 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSV 687 M +D S ++ +++G +R+ L D+ G + + + L Sbjct: 700 EVVGMISVDDMESN----ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVA 755 Query: 688 ETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 T ++D+++ K G +R +S +RV GR + GVR I+L D + ++A VLH + Sbjct: 756 IKNVTDDDDLMIINKSGIAIRLEVSDLRVM-GRATQGVRLINLKGKDSIAAVAKVLHEED 814 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKND 778 + + T+ + + Sbjct: 815 EIEVEDIEDVENPDNAGEALDGTDIVQDDSEE 846 >gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519] gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium sticklandii] Length = 817 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 518/905 (57%), Gaps = 89/905 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E E I + I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRILF M Sbjct: 1 MSEEK----NEMIDKIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G+ K Y K A + G+V+GKYHPHG+ A+YDA+ ++AQD+S R L+ G GNFGS+ Sbjct: 57 NDLGLVPEKSYRKSATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE ++QK LL D+ K+TVDF NYD +EP VL ARYPN+LVNG Sbjct: 117 DGDSAAAMRYTEAKMQKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNL EV+D V +IDN + ++ +M+ I+GPDFPTGA I+G+ I++A Sbjct: 177 GIAVGMATSIPPHNLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + IE+ + QI+VTEIPYQVNKA M+EKIA+LV++KRI I DLR Sbjct: 237 YMTGRGKVTVRSKADIEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLR 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R G R+VIE++R + +++LN LY+++ LQ +FS+ M++L +P+ + +L Sbjct: 297 DESNRDGIRIVIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVH 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ ++ VV RRT+Y L KA++RAH+L GL IA+ N+D V++IIR S N A+ +L + Sbjct: 357 YLNHQKNVVRRRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEE 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q++AIL++RL RLTGL R I E L Sbjct: 417 --------------------------FGLSDIQSQAILDMRLQRLTGLERGKIEEEFAEL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I IL +S LLGIIK E+L ++++ RRT I E ++ D I E++ V Sbjct: 451 MKNIAYYESILQDQSILLGIIKDEMLKIREKHGDKRRTEITEAADEINILDTIPDEEVTV 510 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T +H GY+KR+P+ Y+AQRRGGKG + + RD+DFV L + + H+ +LF ++ G +Y+ Sbjct: 511 TFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYR 570 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 N + Q RI N V Sbjct: 571 L------------------NAYEIPQSGRIAKGTNIVNLIPLEKNEKV------------ 600 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + FI I EN +++ TK G + IS R + RN Sbjct: 601 --TSFISIRDVPA-------------------ENYLVMCTKKGVIKKTQISEFR-KSTRN 638 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 G+ ISL + D++I+ V D + D I K M+ ++ + Sbjct: 639 --GLIAISLREDDELIN---VKTTDGEQDFIIVTKKGMAISFDEKQVRDMGRAAMGVRAI 693 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 E EL + +L +SEKG+GKRT++ D+R+ R GKG++ +S+ + G Sbjct: 694 RLAPDDEVVAMELVDPNKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISE--KTGI 751 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LV V +++I++++ G+LIR+ VN+I I SR T GV + T ++ VV++ RI Sbjct: 752 LVGAKAVYKDEEIMIINSDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARIVVP 811 Query: 901 EIVDE 905 + + Sbjct: 812 KEDEN 816 >gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] Length = 818 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 346/828 (41%), Positives = 519/828 (62%), Gaps = 34/828 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ + Y+ F T+ G V+R S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIIS--QSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V NDI++ TK G VRF SA+R + R++ GVRG++L Sbjct: 634 NGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + I + Y K A G + N + G ++ Sbjct: 693 EGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++ I+ +++ G RT+ + R+ G++ + + + Sbjct: 750 GLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAK 797 Score = 94.9 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 28/265 (10%) Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 VRR + R+ + + LD DE++S+ ++ + + + RF +S Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETD---VIAQGELMSRFDLSE- 415 Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766 R S + + L + +++ + ++ D + ++ + + Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMD 470 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 + + + G + ++L +E ++T+S KG+ KR + +FR R G+G Sbjct: 471 DIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRG 530 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883 ++ T V+ + + LV+ + +D + +++KG + R+ EI R KG V + Sbjct: 531 VQGTGVNDDDFVRELVST---STHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLL 587 Query: 884 STAKDERVVSVERIRESEIVDEAES 908 + E V + I D+ ES Sbjct: 588 KLDEGEIVQT---IISQSGHDDKES 609 >gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] Length = 853 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 339/853 (39%), Positives = 515/853 (60%), Gaps = 40/853 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V + +N + ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSEVQ +AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+ Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 ++GY+KR+ + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT +P E E + Y+ ATK G V++ + Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D++ + ++G A+ L D ++ V+ DILL TK GQC+RF +R GR S+G Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D++I M + M ++ + Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +E I+ ++ +G R D R G++ ++ + ++ ++ Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVAK 809 Query: 844 VFPVN---DNDQI 853 V + D +++ Sbjct: 810 VRTASAEIDGEEV 822 >gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427] gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427] Length = 844 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 347/855 (40%), Positives = 512/855 (59%), Gaps = 45/855 (5%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + +++ I I DEMQN Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 1 MDTNDVTYDRIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K+Y K ARI G+ MGKYHPHG+++IY A+ RMAQ++S R L++GQGNFGS+DGD P Sbjct: 61 GSDKQYRKSARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K +L D+ KDTV+FRPN+D S +EP VL +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKMTALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRT 235 MATNIP HNL EVV+G + +IDN + +++ LM II GPDFPTGA I GR Sbjct: 181 MATNIPPHNLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRY 240 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GI AY TGRG + ++ + IE G + +IVVTEIPY VNK++++EK+A+LV+E++I Sbjct: 241 GIDQAYRTGRGKVKVKAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I D+RDESDR G +VIEL+R + VILNQLY+YT LQ FS+NM+AL KP+ L Sbjct: 301 ITDIRDESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLK 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 IL+ ++ ++EVV RRT++ LNKA RAH+L GL A+ N+D VV +IR S N + A+ Sbjct: 361 QILEEYLKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKD 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +LM+ L+E+Q +AI+E+RL LTGL R+ I Sbjct: 421 KLMEAI--------------------------ELTEIQAQAIVEMRLRALTGLEREKIDQ 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I+ IL+S +LL +IK E+ VK + RRT I + + ED I Sbjct: 455 EYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGDGRRTDITIDEDEYDIEDLIDE 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ LGY+KR+PL Y+ Q RGGKG GV ++DF+ LF+ + ++FF++ Sbjct: 515 ENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G Y+ K +R+P ARG A++N+L L++ E+IT + P E E +N ++ TK G Sbjct: 575 GKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVFPIKEFE---DNTFLTMVTKKG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 +++ L DF I + G IA+ L+ DE++ V T ++ IL+ T+ GQ + F + +R Sbjct: 632 QIKKTPLKDFRNIRKGGLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRP 691 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVR I+L + D+VI + + + + + + Sbjct: 692 M-GRTARGVRAINLGETDEVIGATVPKEGEQILTTTEKGLGKRTQIEAFRA--QKRGGKG 748 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + + +E +L ++ +G R R+ +G++ +V+ Sbjct: 749 LRINKITEKTGCIIGVASVSEEDELLLITSQGIIIRIKVAQISSIGRNAQGVKLINVAD- 807 Query: 836 NEIGALVAVFPVNDN 850 +V + VN+ Sbjct: 808 --DVQVVCMEKVNEE 820 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 147/418 (35%), Gaps = 30/418 (7%) Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R L + + L + + + E+ Q+ + Sbjct: 439 MRLRALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGDGRRTD 498 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKEC 487 ID + + + + ++ Q I + L R +N++ + + Sbjct: 499 ITIDEDEYDIEDLIDEENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIEDDFIKQ 558 Query: 488 LDILSSRSRLLGIIKQELLSVKDELD------TPRRTRIVEGLLDMEDEDCIVR------ 535 L + ++ + ++ + T R T IV L +DE Sbjct: 559 LFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVFPIKEF 618 Query: 536 EDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED V+ G +K+ PL +R R+GG + + +ED + D+ ++ ++L + Sbjct: 619 EDNTFLTMVTKKGQIKKTPLKDFRNIRKGG--LIALSLNEEDELVDVHQTTSKDAILVAT 676 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G + ARG IN+ ++ ++ T+ Sbjct: 677 RNGQGIMFDATDVRPMGRTARGVRAINLGETDE---------VIGATVPKEGEQILTTTE 727 Query: 654 HGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710 G +R ++ F R G K+ + + V + ++E+++LL T G +R + Sbjct: 728 KGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIGVASVSEEDELLLITSQGIIIRIKV 787 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + I GRN+ GV+ I++A QV+ M V D + + +S + + + Sbjct: 788 AQISSI-GRNAQGVKLINVADDVQVVCMEKVNEEFIDDNVEEASITEVSDEDIVDEQE 844 >gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110] gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110] Length = 841 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 351/832 (42%), Positives = 507/832 (60%), Gaps = 32/832 (3%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I ++I DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ + Y Sbjct: 2 QREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++A+YD++ RM Q++SLR L++GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + + +L DL K+T+DF PN+D S +EP+VL A +PN+L+NG GIAVGMATNIP Sbjct: 122 EVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+NP+I ++ LM I+ PDFPT +I G G+++AY TGRG IV+R Sbjct: 182 PHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIYGYNGVRDAYLTGRGKIVLR 241 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E RE I++TE+PYQVNKA ++EKIA LV++K++ IADLRDESDR G RV Sbjct: 242 AKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A V++N+L++ T LQ F V M+AL G P TL ++ +V R EV++ Sbjct: 302 VIELKKDAVTQVVINRLFKLTQLQETFGVIMLALVGGIPRVLTLKETIQYYVNHRHEVIL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL I + NLDE++ IR SP+ ETAR LM Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMA----------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LS++Q +AIL++RL RLTGL R I +E L I+ I Sbjct: 411 ---------------TFSLSDLQAKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ + +IK+ELL +K RRT+IV D ED I ED+V+T++H GY+KR Sbjct: 456 LANEKLQMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDMIAEEDVVITITHQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGG+G SGV R++DF+ +FI STH +LFF+S G Y KV +P Sbjct: 516 FPVSGYRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+++ N++ GE+I + E + ++V ATK+G +++ LS++ R Sbjct: 576 RTARGRSITNLIEFATGEKIKASINVKEFN---DTQFIVMATKNGTIKKTPLSEYSNPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ + DE++ + I+L G VRFP +R GRNS+GV+G S++ Sbjct: 633 SGIIAINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPM-GRNSIGVKGASIS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + +ISM DA + + + E Sbjct: 692 GDEAIISMVSTPRNDATLLAITDNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDM 751 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E+ E I+ ++ KG R D R+ R+ G+R + + + + A+ Sbjct: 752 LEVNDGED-IIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVA 802 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G +K+ PLS Y RR G + DE L ++ Sbjct: 604 FNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGASL--TDGSHQIVLA 661 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + G+ + + N + + + N+ ++ T Sbjct: 662 KNTGYAVRFPEQNVRPMGR--------NSIGVKGASISGDEAIISMVSTPRNDATLLAIT 713 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709 +G +R+ + D+ R + L + +++ + + DI++ T G R Sbjct: 714 DNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDMLEVNDGEDIIIITNKGIVNRQH 773 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 I+ IRV GRN+ GVR I L + D V ++A V D + +E + + S + Sbjct: 774 IADIRVM-GRNTSGVRLIRLDEDDFVSAVARVPKEDTEEEETPEENDNQISLPLDSSDNN 832 Query: 770 EEITSLKND 778 + + Sbjct: 833 PQPEDEDPE 841 >gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 818 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 346/828 (41%), Positives = 521/828 (62%), Gaps = 34/828 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G + +++ ++ E+ V +T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ + N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIIS--QSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V +DI++ TK G VRF SA+R + R++ GVRG++L Sbjct: 634 NGLKALNLKDGDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+ + I + Y K A G + N + G ++ Sbjct: 693 EGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++ I+ +++ G RT+ + R+ G++ + + + Sbjct: 750 GLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMRLDQDAK 797 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 109/263 (41%), Gaps = 27/263 (10%) Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 VRR + R+ + + LD DE++S+ ++ + + + RF +S Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETD---VIAQGELMSRFDLSE- 415 Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766 R S + + L + +++ + ++ D + ++ + + Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMD 470 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 + + + G + ++L +E ++T+S KG+ KR + +FR R G+G Sbjct: 471 DIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRG 530 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883 ++ T V+ + + LV+ + +D + +++KG + R+ EI R KG V + Sbjct: 531 VQGTGVNDDDFVRELVST---STHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587 Query: 884 STAKDERVVSVERIRESEIVDEA 906 + E V ++ I +S D Sbjct: 588 KLDEGEIVQTI--ISQSGHDDNE 608 >gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa] Length = 932 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 349/916 (38%), Positives = 506/916 (55%), Gaps = 78/916 (8%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + S + + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M + Sbjct: 70 DPNGGSPGGGNGRVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHE 129 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +G+ K + KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR LI+G GNFGSVD Sbjct: 130 LGLSSKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDA 189 Query: 123 DPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DPPAA RYTECRL + L DL +DTVDF PN+D S +EP + R P +L+NG G Sbjct: 190 DPPAAMRYTECRLDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSG 249 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMAT IP HNLGE+VD A+I NP+ L L+E + GPDFPTG +I+G GI +AY Sbjct: 250 IAVGMATKIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAY 309 Query: 242 ATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 +G+G IV+RG + +E + R +++ EIPYQ NKA+++EKIAELV +K + I+D+ Sbjct: 310 RSGQGRIVVRGKTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDI 369 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G R+VIELKRGA ++LN LYR T LQS FS NMV + +P++ L +L+ Sbjct: 370 RDESDRSGMRIVIELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQ 429 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ FR VV RR + L++A+ R H++ G+ + NLD VV IIR + + A Sbjct: 430 AFLDFRCSVVERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASA---- 485 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 LSE Q AIL++ L RLT L E S Sbjct: 486 ----------------------DLRNEFSLSEKQAEAILDISLRRLTLLEGKKFVEESKS 523 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDM 538 L +I + ++LSSR +L +I+QE + +K++ PRR+ + + +ED D I E+M Sbjct: 524 LMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEM 583 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 ++ +S GYVKR+ + + Q RG G+S +RD D ++D + H VL+FS G V Sbjct: 584 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIV 643 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y +++P + A G LI LSL+ GERIT+I+P E + +++ T +G ++ Sbjct: 644 YSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSEFV---EDQFLLMLTVNGYIK 700 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L+ F I +G IA++L DE+ V CT + + + ++ G + IR G Sbjct: 701 KVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRAL-G 759 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ G + L +GD++ SM I+ + E Sbjct: 760 RNTRGGVAMRLREGDKIASMDIIPASLQKDLEVA-------------------------- 793 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 S++ K ++L VSE G GKR F+ S + G+ + Sbjct: 794 -------SKDSENNNKGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFE---E 843 Query: 839 GALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 L AVF V ++Q++LVS GT+ R+ V +I I SR +GV++ + Sbjct: 844 DHLAAVFAVGFSLTEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGK 903 Query: 891 VVSVERIRESEIVDEA 906 + S I ++ E Sbjct: 904 IQSTSLISAADPELEE 919 >gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] Length = 828 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 342/849 (40%), Positives = 510/849 (60%), Gaps = 40/849 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E I V + +M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E+V+ V +IDN + +D L+ I++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + QI+VTE+PY VNKA ++EKIAELVR+K+I I D+ D S Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ I L+R A+A+VILN+LY++T +Q F V M+AL G P+ +L+ +L+ ++A Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA RAH++ GL A+ +D++++IIR S + A+ LM Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLM----- 416 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 T SEVQ + I+ +RL +LTG+ R+ + E L I+ Sbjct: 417 ---------------------DTFGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E ILS R+ LL +I+QE+L++ ++ RRT I D+ ED I +E+ V+ ++ Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +R+Q RGGKG G+ D+D++ +L + +TH ++FF+S G VY+ K Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A+IN+L L E+IT ++P E + Y+ ATK+G V++ + Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ + DI+L TK GQC+RF + +R GR S+G Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI+L + D+VI M + D + ++ + Sbjct: 692 VRGINLLEEDEVIGMQLTCQGDYLLIVSEKGLGKRTSI--SEFTRQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E I+ ++ +G R I R G++ D+ + + Sbjct: 750 KTGNVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDIT---VAS 806 Query: 844 VFPVNDNDQ 852 + V + ++ Sbjct: 807 IAKVREKEE 815 >gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] Length = 853 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 339/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V + +N + ++ +++II+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G R+ IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSEVQ +AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+ Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 ++GY+KR+ + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT +P E E + Y+ ATK G V++ + Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D++ + ++G A+ L D ++ V+ DILL TK GQC+RF +R GR S+G Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D++I M + M ++ + Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + +E I+ ++ +G R D R G++ ++ + + ++ Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAK 809 Query: 844 VFPVN---DNDQI 853 V + D +++ Sbjct: 810 VRTASAEIDGEEV 822 >gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] Length = 809 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 348/828 (42%), Positives = 509/828 (61%), Gaps = 33/828 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM++SYL YA++VI+ RA+PD+RDGLKPV RR L+ M Q+G+ + +Y K A Sbjct: 6 VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ YHPHG++A+YD L RMAQD++LR L++GQGNFGSVDGD AA RYTE RL Sbjct: 66 GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF PNYD S +EPVVL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ DG + +ID+PD ++ L +I++GPDFPTG +ILGR GI +AY TG+G I++R +H Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G+R I+VTE+PYQVNKAA++EKIAELV+E+RI I+D+RDESDR G R+VIEL+ Sbjct: 246 IEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIELR 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 R A +LNQLY++T +Q+ F VN +AL P TL +++ ++ R+ V+ RRT+ Sbjct: 306 REAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRTE 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR RAHVL GL IA++NLD V+ IR S + + A+ +LMQ Sbjct: 366 YDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQ--------------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+EVQ +AIL+++L RL L R I +EL + +I+E IL+S Sbjct: 411 -----------DFGLTEVQAQAILDMQLRRLAALERQKIEDELKEVRAQIREYESILASP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L I+K +L ++D+ RRT+IVE D+ DED I ++ V+V+ GY+KR+P Sbjct: 460 EKVLAIVKSDLQEIRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPD 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR QRRGG+G +GV ++D D V L + +T SVLFF++ G VY+ K +P S ++ Sbjct: 520 TYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSK 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G L+N+++L ER+T ++ E + + Y+ TK+G ++R L ++ + +G I Sbjct: 580 GLPLVNLINLEPHERVTEVIAVREFK---PDRYLTTITKNGKIKRTSLEEYSSVRSNGLI 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM L+ DE+ V +DIL+ T GQ +RFP S +R GR ++GV I L++GD+ Sbjct: 637 AMSLEEGDELRDVRLLGDNDDILVLTAKGQSIRFPASDVRP-TGRQAIGVTAIRLSEGDE 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++M +V ++ S ++ + + Sbjct: 696 VVAMEVVQSGAEILLVTKKGFGKRTSI--DEFNRQARAGSGARAIKIDEKTGDLATARMA 753 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ++ +L S G R + +++ +G+ + + + +L Sbjct: 754 PEDSEVLIASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSLA 801 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 61/254 (24%) Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCV 706 V T G ++R + R G+ + D + + C + +L T G+ Sbjct: 505 VSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVY 564 Query: 707 RFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 + I + R S G V I+L ++V + V Sbjct: 565 QIKAHEI-PDSSRTSKGLPLVNLINLEPHERVTEVIAVRE-------------------- 603 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 ++++ T+++ G KRTS ++ Sbjct: 604 ------------------------------FKPDRYLTTITKNGKIKRTSLEEYSSVR-- 631 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+ A + + L V + DND I++++ KG IR P +++R R GV Sbjct: 632 SNGLIAMSLEEG---DELRDVRLLGDNDDILVLTAKGQSIRFPASDVRPTGRQAIGVTAI 688 Query: 884 STAKDERVVSVERI 897 ++ + VV++E + Sbjct: 689 RLSEGDEVVAMEVV 702 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 90/216 (41%), Gaps = 17/216 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + + T++ G +KR L Y + R G + DE L + +L Sbjct: 604 FKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLG--DNDDILVL 661 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G + + QA G + + L++G+ + + + ++ T Sbjct: 662 TAKGQSIRFPASDVRPTGRQAIG---VTAIRLSEGDEVVAMEVVQ------SGAEILLVT 712 Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRF 708 K G +R + +F + R SG A+K+D D + + +++++L+ + GQ VR Sbjct: 713 KKGFGKRTSIDEFNRQARAGSGARAIKIDEKTGD-LATARMAPEDSEVLIASASGQVVRL 771 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + I + + GV ++L D V S+AI+ + Sbjct: 772 KTNTI-SKQSKAARGVSLMTLKPNDSVTSLAIIANN 806 Score = 55.6 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 65/188 (34%), Gaps = 13/188 (6%) Query: 727 ISLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 I GD+ V + + D + + + + DT Sbjct: 473 IRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVN 532 Query: 782 EGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG---IRATDVSKI 835 + + E + +L + KG + +++ S+R+ KG + ++ Sbjct: 533 GVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSKGLPLVNLINLEPH 592 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + ++AV + + ++ G + R + E R + G++ S + + + V Sbjct: 593 ERVTEVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSV-R-SNGLIAMSLEEGDELRDVR 650 Query: 896 RIRESEIV 903 + +++ + Sbjct: 651 LLGDNDDI 658 >gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] Length = 828 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 342/849 (40%), Positives = 510/849 (60%), Gaps = 40/849 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E I V + +M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E+V+ V +IDN + +D L+ I++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + QI+VTE+PY VNKA ++EKIAELVR+K+I I D+ D S Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ I L+R A+A+VILN+LY++T +Q F V M+AL G P+ +L+ +L+ ++A Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA RAH++ GL A+ +D++++IIR S + A+ LM Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLM----- 416 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 T SEVQ + I+ +RL +LTG+ R+ + E L I+ Sbjct: 417 ---------------------DTFDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E ILS R+ LL +I+QE+L++ ++ RRT I D+ ED I +E+ V+ ++ Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +R+Q RGGKG G+ D+D++ +L + +TH ++FF+S G VY+ K Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P S ARG A+IN+L L E+IT ++P E + Y+ ATK+G V++ + Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ + DI+L TK GQC+RF + +R GR S+G Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI+L + D+VI M + D + ++ + Sbjct: 692 VRGINLLEEDEVIGMQLTCQGDYLLIVSEKGLGKRTSI--SEFTRQNRGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E I+ ++ +G R I R G++ D+ + + Sbjct: 750 KTGNVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDIT---VAS 806 Query: 844 VFPVNDNDQ 852 + V + ++ Sbjct: 807 IAKVREKEE 815 >gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] Length = 839 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 328/903 (36%), Positives = 519/903 (57%), Gaps = 88/903 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E + I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ + Sbjct: 13 QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+ Sbjct: 73 RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A LL D+ KDTVDF NYDG QEP VL A +PN+L NG GIAVGM+T Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP+HNL E++ G + +IDNPD ++ L+ +I+GPDFPTGA I+ GI++ + TG+G++ Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNV 252 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR IE+ R +VVTEIPY VNK +++EKI ELV+ + I IAD+RDES R+G Sbjct: 253 VIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR +V+LNQL++ T LQ F VNM+AL P+ + L ++ + +V Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDV 371 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++R+T++ L K ++R H+L GL IA N+DEV+ II+ S N + A L +R Sbjct: 372 LIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------- 423 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L E+Q RA+L++RL L+ L + ++ E L I+ C Sbjct: 424 ------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQ 465 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L +IK++L + ++ PRR+ I+ D++DED I +E++V+T+S GY Sbjct: 466 QVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGY 525 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +G +N++ +++ E+I ++ + N Y F TK+G ++R LS+F Sbjct: 586 PGFRTNKGIPAVNLIKIDKDEKICALISVNDY----QNGYFFFCTKNGTIKRTSLSEFAN 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I GK A+ D + SV + ++DI + + G VRF +R + R ++GV GI Sbjct: 642 ILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGI 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L + + V ++ + Sbjct: 701 NLNQCEFVNGLSTSSNG------------------------------------------- 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTV 765 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 N+ ++++S G ++R+ + ++ + T GV + + ER+ +V ++ E + Sbjct: 766 FGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTT 825 Query: 908 STE 910 +TE Sbjct: 826 ATE 828 >gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] Length = 852 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 344/845 (40%), Positives = 509/845 (60%), Gaps = 38/845 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 D I V + + M+ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M+++ Sbjct: 2 DDSNIFDKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K + KCARI G+ MGKYHPHG+++IY AL +AQDWS R L++G GNFGSVDGD AA Sbjct: 62 DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + + D+ KDTVDF PN+D + +EP +L +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 TNIP HNL E +DG V +IDN D ++D L+EI++GPDFPTGA ILGR GI AY Sbjct: 182 TNIPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +R V++IE +++I+VTE+PY VNKA ++EKIA+LV+EKRI I +LRDE Sbjct: 242 TGRGKIKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+ IE ++ +A+V+L QL+++T LQ F V M+AL +P+ L +L ++ Sbjct: 302 SDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +++VV RRTKY LNKA++RAH+L GL A+ +DEV+ IIR S N AR L++R Sbjct: 362 NHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKR-- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 S+ Q +AI+++RL LTGL R+ ++NE + L Sbjct: 420 ------------------------FEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEK 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E IL+ LLG+I++E+L ++D+ RRT I + D+ DE I R+D ++T Sbjct: 456 KIAELEAILADEKVLLGVIREEILLIRDKYGDDRRTSIEMDMEDLSDEALIPRKDAIITF 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S LGY+KR+ + +Q RGGKG G+ + DED + DLF+ STH ++FF++ G VY+ K Sbjct: 516 SKLGYIKRMTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG +IN+L L E+IT I+P ED Y+V AT++G V++ Sbjct: 576 GYEIPESSRTARGVNIINLLQLQPEEKITAIIPLSEDG---KQHYLVMATRNGIVKKTGF 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++ + ++G A+ L DE++ V+ + DI L ++ GQC+RF + +R GR S+ Sbjct: 633 DEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE-TGRVSM 691 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G++L D+V+ M I H++ D + + Sbjct: 692 GVIGMNLGDTDEVVGMQI--HSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKIT 749 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + E+ I+ ++ +G R S + R+ G++ ++ ++I + Sbjct: 750 EKTGYVIGVKTIKPEEEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDI-KVA 808 Query: 843 AVFPV 847 +V V Sbjct: 809 SVAKV 813 >gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] Length = 826 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 346/847 (40%), Positives = 508/847 (59%), Gaps = 37/847 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV++ V +ID+ + ++ +++I++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R A+A+VILNQLY++T +Q F V M+AL +P L+ +L ++ Sbjct: 302 NREGMRICIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNEPRVMNLLDMLNHYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S + A+ L+ Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLIA---- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L+EVQ +AI+++RL LTGL R+ + E L Sbjct: 418 ----------------------AFDLTEVQAQAIVDMRLRALTGLEREKLETEYAELMKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E++ ++D+ RRT I D+ ED I RED+V+T++ Sbjct: 456 IGELKAILADRKLLLGVIKEEIIVIRDKYGDERRTAIGFDEYDISMEDLIPREDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 LGY+KR+ + +++Q RGGKG G+ +ED++ DLF+ STH V+FF++ G VY+ K Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT I+P E Y+ ATK G V++ ++ Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPIKEYV---QGEYLFMATKKGLVKKTPIT 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ E DI+L TK GQC+RF +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVRS-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L D+V+ M + + M + S + + Sbjct: 692 VRGMNLGDRDEVVGMQLNTQGEHLLIVSEKGMGKRTEMSEFTSQN--RGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ I+ ++ +G R + R G++ ++ ++ ++ Sbjct: 750 KTGNVVGVKAVSEDNEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIAK 809 Query: 844 VFPVNDN 850 V + Sbjct: 810 VREASSE 816 >gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 804 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 321/888 (36%), Positives = 489/888 (55%), Gaps = 88/888 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I SI +EMQ+SY+ YA++VI+GRA+PD RDGLKP RRIL+ M ++ +++ K Sbjct: 3 ENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ GEV+GKYHPHG+ A Y+ L RMAQD+S+ +L+EGQGN GSVDGDPPAA+RYTE Sbjct: 63 SARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEV 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+K A +L D+ K++V F PN+D + EPVVL ++ PN+++NG GIAVG+ATNI H Sbjct: 123 RLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV A +DN +I L+ ++GPDFPTG ++ + +Y GRGS+ IR Sbjct: 183 NLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGRLIESYIKGRGSVTIRAR 242 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IEK E+IV+ EIPY VNKA+++EKI LV+++ I I+DLRDESD++G R+ IE Sbjct: 243 VSIEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISIE 301 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK + D +LN LY++T LQ V VA+ G + + ++K FV R VV+ RT Sbjct: 302 LKANTNPDYVLNALYKHTQLQITMPVMNVAVLGNRLLNLNIRDMIKIFVEHRFGVVINRT 361 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L A R H++ GL IA ++D VV IIR S N A+ LM + Sbjct: 362 NYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAK------------- 408 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 ++E Q AIL+++L++LT L ++++ E L I +L S Sbjct: 409 -------------YGITEAQAAAILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGS 455 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++ IIK E + ++ RRT I L ++E+ED I ED ++ ++ GY+KR+P Sbjct: 456 KEKVYQIIKDETKEIAEKYGIDRRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLP 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + VY+ Q RGG+G + +++ DFV + T +L +S G VY K + +P G Sbjct: 516 MDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRY 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+GKA +N++S+ +GERI I+ + + ++FAT+ G ++ K F + +G Sbjct: 576 AQGKAAVNLISIAEGERIEQIINTRDF----SGKNLIFATRRGRIKSTKAELFSRPRANG 631 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+KL+ D ++ V T +++ L T+ G+ +RF S +R GR + GVRGI L Sbjct: 632 IRAIKLNEDDIVVGVCLSTGGSNVFLATRNGKAIRFMESDLRHM-GRVASGVRGIRLKPN 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+++ + + Sbjct: 691 DELVDVVVADPKKN---------------------------------------------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 I+T++E+G+GK T +R+ R G G+ V++ + G +V V +D Sbjct: 705 -------IITITERGYGKATLLERYRLQRRGGGGVINLKVTE--KTGKVVRVLDGEQDDN 755 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +I+ + KG IR N IR+ R GV + D +VV + + + Sbjct: 756 VIIFNSKGLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQIVGKE 803 Score = 45.6 bits (106), Expect = 0.042, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + D D II+++ G + R+P++ + R +GV+ + + V V R + Sbjct: 495 LIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKD 550 >gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5] Length = 850 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 338/852 (39%), Positives = 519/852 (60%), Gaps = 44/852 (5%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EDNIFDKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF+PN+D + +EPVVL AR+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E ++ V +IDN + ++ L+EI++GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V++IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D S Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFTLIGILK 359 R+G R+ I+L++ A+A+VILN LY++T LQ F V M++L +P+ L +L+ Sbjct: 302 SREGMRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLE 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ +E VV RRT+Y LNKA++RAH+L GL A+ N+DEV+RIIR S N + A++EL+ Sbjct: 362 YYLEHQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELID 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R L++VQ +AI+++RL LTGL R+ + E Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ R LL +I++E+L++ ++ R+T I + D+ ED I RE+ V Sbjct: 456 LMEKIRKFQAILADRKLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTV 515 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 + ++ LGY+KR+ + +R+Q RGG+G G+ ++D++ +L + +TH ++FF++ G VY Sbjct: 516 IAMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVY 575 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KV+ +P ARG A+IN+L L GE+IT ++P + E Y++ ATK G V++ Sbjct: 576 RLKVYEIPEAGRTARGTAIINLLQLAPGEKITAVIPLRKYE---EGHYLMMATKKGLVKK 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + D+ + ++G A+ L DE++ V+ DI+L T+ GQC+RF + +R GR Sbjct: 633 TPIKDYENVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVRS-TGR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRG++L GD+V++M + D M +A + + Sbjct: 692 ASMGVRGMNLTDGDEVVAMQLNTQGDYLLVVSENGMGKRTAMSEFVVQN--RGGKGVKCY 749 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + +E I+ ++ +G R D + R G++ ++++ Sbjct: 750 KITEKTGNVVGAKAVNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVT-- 807 Query: 840 ALVAVFPVNDND 851 + ++ V D D Sbjct: 808 -VASIAKVRDKD 818 >gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] Length = 806 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 326/889 (36%), Positives = 509/889 (57%), Gaps = 93/889 (10%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV NK + K ARI G Sbjct: 6 PIEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVG 65 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 EVMGKYHPHG+AAIYD + RMAQDW++R LI+GQGNFGS+D DPPAA RYTE RL K A Sbjct: 66 EVMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIA 125 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 LL+D+ K+TV+ N+DGS +EP VL +++PN+L NG GIAVGM TNIP HN+ E+V Sbjct: 126 EELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELV 185 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +G +A+I NP+I ++ LM I GPDFPTG I+G++GI+ Y TG+GS IRG H+E+ Sbjct: 186 NGLIALIKNPEISIEELMNFIPGPDFPTGGEIIGKSGIREMYTTGKGSFTIRGKVHVEEK 245 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + IV+TEIP+ ++KA +++KI E EK + I D+RDESD++G R+VIE+ + Sbjct: 246 KKKKN-IVITEIPFNISKADLIKKIVEYA-EKSSLPIKDIRDESDKEGLRIVIEIPNDTN 303 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++I+N LY++T LQS F ++ ++ KP L ++ AFV R EVV RR +Y Sbjct: 304 EEIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYK 363 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + +AH+L GL A ++D ++ +IR S + +A EL+ Sbjct: 364 QYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELI-------------------- 403 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q +AI++LRL RLT L + ++ N L ++K +++ + ++ Sbjct: 404 ------DMFNFTETQAKAIVDLRLGRLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVY 457 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 I +EL ++K E R++ I++ + + I +++V++++ GY+K + L Sbjct: 458 EKIIEELEAIKSEYGDSRKSIILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDT 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ QRRGGKG +G + D+D + ++ H LFF+S G VY +++ S +RG Sbjct: 518 FKTQRRGGKGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRG 577 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + L++ Q E+I T++ + F TK+G +R L +F IN G A Sbjct: 578 RQIAKYLNIGQDEKILTMLSVDNF-----EGELFFVTKNGKAKRTSLKEFENINSRGMKA 632 Query: 676 MKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + D D ++SV + + IL+ TK G C+RFPIS +R GRN++GV GI L+ D Sbjct: 633 ITFDGDDLLVSVQKIDNPDQTILIATKNGLCIRFPISEVRTM-GRNAMGVIGIRLSNDDA 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S ++++ Sbjct: 692 VVSSSLLMDD-------------------------------------------------- 701 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ++LTV+ KG+GK T + +RI R G GI+ S I++ G +V V V N+ ++ Sbjct: 702 --EHYLLTVTSKGYGKLTETSQYRIQKRGGLGIKNI--SDISKAGHIVGVTHVLGNENMM 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + + G +++ ++ +R R TKGV + + ++ + + IR + V Sbjct: 758 IFTKNGMTLKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIRGEDDV 806 >gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] Length = 811 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 347/844 (41%), Positives = 527/844 (62%), Gaps = 38/844 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E +++ TSV+I +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q+G+ N Sbjct: 2 PELKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + K ARI GEV+GKYHPHG+ A+YD + RMAQ++S R +L++G GNFGSVDGD AA Sbjct: 62 KSHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K + LL D+ KDTVDF+PN+D + +EP VL +R PN+L+NG GIAVGM+T Sbjct: 122 RYTEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMST 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+DG +A+IDNPD+D+ LM+II+GPDFPTG +I+GR GIK A+ TG+G + Sbjct: 182 NIPPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE+ +RE+I+V E+PYQVNKA ++EK A LVR+ + IADLRDESDR G Sbjct: 242 KVRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+L++ A+ ++LN+L+++T LQ F + M+AL +PE +L +L+ ++ ++EV Sbjct: 302 RISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTKY L+KA+ R H+L GL A N+D VV+ IR S + A+ L+ Sbjct: 362 VTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLIS--------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L++ Q +AIL +RL RLTGL + I +E L EI+ Sbjct: 413 -----------------DFDLTKKQAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLK 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S +LL IIK E+L +K++ RRT+IV+ +D+ ED I E++++T++ Y+ Sbjct: 456 SILASEEKLLDIIKDEILVLKEKYKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL YR+Q RGG+G G+ +D V L+ STH +LFF++ G Y+ K +++P Sbjct: 516 KRIPLDTYRSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPD 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G A+IN+L + ER+T ++P + + + Y++ T+ G V+R +L +F Sbjct: 576 ASRQAKGTAIINLLDMEPNERVTAVIPVEDFDL---DDYLLMVTEQGIVKRTELQEF-NT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +G IA+ L DE++ V T + DI+L T+LG +RF S +R GR + GV+GI Sbjct: 632 NYTGLIALDLQQNDELIEVRLTTGQEDIILGTELGLAIRFNESEVRSM-GRTARGVKGID 690 Query: 729 LAKGDQVISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA D+V+ I+ Y K + + + G ++ Sbjct: 691 LASQDKVVGADIIKDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTA 750 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E ++ ++ +S++G R S + ++R+ +G+ + + + +V++ + Sbjct: 751 LKVVE---EDDEVMLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDR---VVSLAHI 804 Query: 848 NDND 851 D D Sbjct: 805 EDED 808 >gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] Length = 835 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 341/849 (40%), Positives = 511/849 (60%), Gaps = 37/849 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE + V + M++SY+ YA++VI RA+PD+RDGLKPV RRILF M ++G + Sbjct: 2 DEHIFDKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R L++G GNFGS+DGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ + +IDN D +D LMEI++GPDFPTGA ILG++GI+ AY T Sbjct: 182 NIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATILGKSGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R VS I + +I++TE+PY VNKA +++KIAELV++K+I I + D+S Sbjct: 242 GRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 + QG RV IEL+R +A+VILNQLY++T LQ F VNM+AL +P+ L +L ++ Sbjct: 302 NMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLE 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRTKY LNKA++RAH+L GL IA+ N+DEV+ IIR S + A+++L++R Sbjct: 362 HQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q++AI+++RL LTGL R+ I E N L Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRTLTGLEREKIEAEYNELMKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ +LL +I++EL + D+ RRT I D+ ED I E V+T++ Sbjct: 456 IDELKAILADNKKLLMVIREELSIIMDKYGDDRRTAIGYDEFDISMEDMIPNESTVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +LGY+KR+ +R+Q RGG+G G+ D+D++ D+ + +TH VLFF++ G VYK K Sbjct: 516 NLGYIKRMTPDNFRSQNRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N+L+L GE+I+ I+P + +N Y+ ATK G V++ Sbjct: 576 YEIPEAGRTARGTAIVNLLTLQAGEKISAIVPV---DGIKDNEYLFMATKQGIVKKTYCK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ I ++G A+ L DE++ V+ +I L TK G C+RF + +R GR+++G Sbjct: 633 EYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRP-TGRSAMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+++ +GD+V+ M + D + + + + + Sbjct: 692 VIGMNILEGDEVVGMQLNTQGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKS 751 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +E I+ ++ +G R R G++ ++ ++ + Sbjct: 752 GNVIGVKAVSNTRE--IMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKVAK 809 Query: 844 VFPVNDNDQ 852 V + +D+ Sbjct: 810 VREEDVSDE 818 >gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] Length = 718 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 354/716 (49%), Positives = 487/716 (68%), Gaps = 13/716 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +W ++ +++ Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTA 718 Score = 77.5 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R E + + N ++ ++L +E ++T+S +G+ K D+ R Sbjct: 503 REELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQGYVKYQPLSDYEAQRR 562 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 GKG A + + + I L N +D I+ S +G + + V ++ ASR +G I Sbjct: 563 GGKGKSAARIKEEDFIERL---LVANTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPI 619 Query: 883 FS---TAKDERVVSVERIRE 899 + DER+ ++ +RE Sbjct: 620 INLLPLEADERITAILPVRE 639 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 13/219 (5%) Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 F R+ A D E + QE+ ++ + G P+S R Sbjct: 510 REQFGDARRTEITANTADINIE----DLIEQEDVVVTLSHQGYVKYQPLSDYEA-QRRGG 564 Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778 G + + D + + + D Y + G Sbjct: 565 KGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPIINLLP 624 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + I+ + + + G K+T+ +F R+ GI A ++ N+ Sbjct: 625 LEADERITAILPVREYAEGVNVFMATASGTVKKTALTEFSR-PRAA-GIIAVNL---NDG 679 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 L+ V + ND+++L S G ++R + +R R Sbjct: 680 DELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTA 718 >gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] Length = 844 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 342/847 (40%), Positives = 508/847 (59%), Gaps = 37/847 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ + V + M+ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ + Sbjct: 2 EDNIFDKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS R +L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + + D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV+ V +ID+ + ++ +MEII+GPDFPTGA ILG GI+ AY T Sbjct: 182 NIPPHNLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R VS+IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S Sbjct: 242 GRGKIRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R+G RV IEL+R + +V+LNQLY++T LQ F V M+AL +P+ +L+ IL ++ Sbjct: 302 SREGMRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMSLLEILNHYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S + A+ ELM R Sbjct: 362 HQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSR--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q++AI+++RL LTGL R+ + E L + Sbjct: 419 -----------------------FNLSDAQSQAIVDMRLRALTGLEREKLETEYAELEKK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ R LLG+IK+E+L + ++ RRT I D+ ED I RED+V+T++ Sbjct: 456 IAEYKAILADRKLLLGVIKKEILVISEKYGDDRRTAIGFDEYDISTEDLIPREDVVITMT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +GY+KR+ +++Q RGGKG G+ DED+V +LF+ +TH ++FF++ G Y+ K Sbjct: 516 KMGYIKRMSNDTFKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKG 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P +RG A+INIL L E+IT ++P + + Y+ ATK G V++ + Sbjct: 576 YEIPEAGRTSRGTAIINILQLQPDEKITAMIPIKDFK---EGDYLFMATKKGLVKKTPIL 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 D+ + ++G A+ L DE++ V+ E D++L T+ GQC+RF S +R GR S+G Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRS-TGRTSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L+ D+V++M + + M + + + + Sbjct: 692 VRGMNLSDRDEVVAMQLDAQGEELLIVSEKGMGKRTRMEEFTAQN--RGGKGVKCYKITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + I+ ++ G R + R G++ ++ + E+ ++ Sbjct: 750 KTGNVVGAKAVGPDDEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIAK 809 Query: 844 VFPVNDN 850 V + Sbjct: 810 VRRASGE 816 >gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46] gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46] gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46] Length = 783 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 327/854 (38%), Positives = 477/854 (55%), Gaps = 93/854 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D + + L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L K +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q +AIL+++L RL L R I + Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KL+DF G +A+ L DE++ C+ ++D+LL + GQ +RF + + Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++S+ +V Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++L + G+ KRT+ ++ + R GKG+ Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756 Query: 834 KINEIGALVAVFPV 847 + G LV V Sbjct: 757 RR--RGRLVGALIV 768 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 87/242 (35%), Gaps = 15/242 (6%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 R+ IA D DE L E+ ++ T+ G R R R Sbjct: 488 DRHGDDRRTRIIAADGDVSDEDLIAR----EDVVVTITETGYAKRTKTDLYRSQK-RGGK 542 Query: 723 GVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 GV+G L + D V + D + Y + + Sbjct: 543 GVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAF 602 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E I++ +++ + G K++ DF SNRSG GI A ++ Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF-DSNRSG-GIVAVNLRD---ND 657 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897 LV + +D ++LVS G IR + +R RAT GV D+R++S+ + Sbjct: 658 ELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVV 717 Query: 898 RE 899 RE Sbjct: 718 RE 719 Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 21/229 (9%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKG 732 LD+ DE++++ ++ DI + G I I+ R R +L + Sbjct: 398 LDALDEVIALIRASETVDI---ARAGLIELLDIDEIQAQAILDMQLR-----RLAALERQ 449 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + +A + AD ++ + + R + + + + + ++ Sbjct: 450 RIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDED 509 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L +E ++T++E G+ KRT + +R R GKG++ + + +VA F V Sbjct: 510 LIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL----KQDDIVAHFFVCSTHD 565 Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897 +IL + +G + R ++ ASR +G + + +ER+ V +I Sbjct: 566 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI 614 Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 14/244 (5%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV T+ G +R K + R G L D + C+ + IL T G+ Sbjct: 517 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 576 Query: 706 VRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R + A R + G +L +++ ++ + + Sbjct: 577 YRAKAYDL-PEASRTARGQHVANLLAFQPEERI--AQVIQIRGYTDAPYLVLATRNGLVK 633 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD--FRIS 820 + D + S + + E L + +L VS G R S+ D R Sbjct: 634 KSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPM 693 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R+ G++ N L+++ V + +++ + G R + E + R KGV Sbjct: 694 GRATSGVQGMRF---NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 750 Query: 881 -VIF 883 + Sbjct: 751 LTVM 754 >gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 774 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 346/855 (40%), Positives = 512/855 (59%), Gaps = 88/855 (10%) Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFG Sbjct: 1 GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG Sbjct: 61 SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIH 180 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TG+GSIV+R + IE T RE+IVVTE PY VNK + E I LV+EKRI I Sbjct: 181 KAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITA 240 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL Sbjct: 241 VRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQIL 300 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM Sbjct: 301 DAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM 360 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + LSE QT+AIL++RL RLTGL RD I++E + Sbjct: 361 SK--------------------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYD 394 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVRED 537 L I + DIL+ R+ IIK EL VK + RRT ++ +L +EDED I D Sbjct: 395 DLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESD 454 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L STH +LFF++ G Sbjct: 455 VLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGR 514 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K + +P A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V Sbjct: 515 VYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIV 572 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R + +F I ++G A+ L DE+++V + DI++ TK G VRF SA+R + Sbjct: 573 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 632 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GV+G++L +GD V+ + Sbjct: 633 -RIATGVKGVNLREGDTVVGAS-------------------------------------- 653 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 L + +L ++EKG+GKRT + ++ R GKG++ +++ N Sbjct: 654 ---------------LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN- 697 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SV 894 G L + V ++ +++++D G +IR + I RAT GV + +D ++V +V Sbjct: 698 -GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTV 756 Query: 895 ERIRESEIVDEAEST 909 + E+ E E+ Sbjct: 757 AVAEKEEVGTENETE 771 >gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 862 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 330/921 (35%), Positives = 496/921 (53%), Gaps = 102/921 (11%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + I V + EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M Sbjct: 1 MSEDTV----YNHGLIKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + + K A++ G+VMG YHPHG+ AIYD + R+ Q WS+R L+ GQGNFG+ Sbjct: 57 YDGGYRPDNSFSKSAKVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTP 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 AA RYTE R+ A ++ D+ + TVDF PNYDGS EP VL +R+PN+LVNG Sbjct: 117 GDLGAAAPRYTEVRMAPLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSE 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV G ++NPD + L+ + I+GPDFPTGA+ILG G Sbjct: 177 GIAVGMATRIPPHNLREVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTRG 236 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TG GSI R V +++ R+ +VVT++PYQVN +L+K+ E +++ R+ I Sbjct: 237 IEDMYRTGHGSITQRAVVEVDEI-HGRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGI 295 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+V+ LK+ A A V+LN LY++T LQ+ F NM+AL P +L Sbjct: 296 ADIRDETSGRAGQRIVVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDGVPRTLSLD 355 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G ++ +V F+ EV++RRT+Y L +A R H+L G A+ LD V+ +IR S + AR Sbjct: 356 GFVRHWVTFQMEVILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLART 415 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM + + E Q AILE++L RL L R I + Sbjct: 416 GLM--------------------------DLLEIDEDQANAILEMQLRRLAALERQKIID 449 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + + DI++ R II +EL ++ D+ RRT I+ +M ED I Sbjct: 450 EYEEKAALVADYKDIIAKPERQRAIIGEELGAIVDKYGDDRRTTILPFDGEMSVEDLIPE 509 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ G++KR S YRAQ RGGKG G +R +D V + STH LFF++L Sbjct: 510 EDVVVTITRGGFIKRTKTSEYRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNL 569 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + +P A+G+ + N+L+ GE I + + + Y+V AT G Sbjct: 570 GRVYRIKGYEIPEAGRDAKGQHIANLLAFQPGETIASTITLKGYD---QAQYLVLATADG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR----DEILSVETCTQENDILLTTKLGQCVRFPIS 711 V++ +LSD+ G IA+KL D +++ +++D+LL ++ G +RF + Sbjct: 627 LVKKTRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLRFKAT 686 Query: 712 A--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +R GR S GV G+ +GD +++M +V Sbjct: 687 DEALRPM-GRPSSGVTGMKFREGDSLLTMRVVRD-------------------------- 719 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + V+E GF KRTS ++RI R+G GI+ Sbjct: 720 ---------------------------NAEVFVVTEGGFAKRTSVDEYRIQGRAGLGIKV 752 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 +++ E G LV + + + ++++ + G ++R E+ R T+GV + Sbjct: 753 AKLTE--ERGDLVGAL-ITEGEDVMVIMESGKVMRASAAEVSKTGRNTQGVTFARPDGGD 809 Query: 890 RVVSVERIRESEIVDEAESTE 910 R++++ R E+ I E ++ Sbjct: 810 RIIAIARNIETTIEAEVGQSD 830 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 10/245 (4%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G VK+ LS Y + R GG + + + Sbjct: 623 TADGLVKKTRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLR 682 Query: 603 VWRLPIGSP-QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 R + + + +G+ + T+ +N V T+ G +R Sbjct: 683 FKATDEALRPMGRPSSGVTGMKFREGDSLLTMRVVR------DNAEVFVVTEGGFAKRTS 736 Query: 662 LSDFIQINRSG--KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + ++ R+G KL L T+ D+++ + G+ +R + + GR Sbjct: 737 VDEYRIQGRAGLGIKVAKLTEERGDLVGALITEGEDVMVIMESGKVMRASAAEV-SKTGR 795 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N+ GV GD++I++A + + + + +A + S + + + Sbjct: 796 NTQGVTFARPDGGDRIIAIARNIETTIEAEVGQSDGEGENAADTVASVVEVSTETATDHA 855 Query: 780 SVEGN 784 + G Sbjct: 856 NQAGA 860 >gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] Length = 852 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 324/850 (38%), Positives = 512/850 (60%), Gaps = 39/850 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ I V + M++SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++G + Sbjct: 2 DDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQDWS+R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + L+ D+GK+TVDF PN+D + +EP VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 NIP HNL EVV+ V +IDN + +D L+++++GPDFPTG +ILG +GIK AY TG Sbjct: 182 NIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTG 241 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RG I +R V++IE + +IVVTE+PY VNKA ++EKIAEL ++K+I I DLRDE+ Sbjct: 242 RGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETS 301 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G R+V+EL+R + V+LN L+++T LQ F V +AL +P+ L +L ++ Sbjct: 302 REGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIH 361 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 +++VV RRTK+ L+KA RAH++ GL IA N+DEV+ IIR S + A+ LM+R Sbjct: 362 QKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMER---- 417 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 L++ Q++AI+++RL LTGL R+ + E L +I Sbjct: 418 ----------------------FGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQI 455 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+ +LLG+I++E++++ D+ R+T I DM ED I + V+T++ Sbjct: 456 AQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTK 515 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 +GY+KR+ ++AQ RGGKG G+ ++D++ ++ + ++H ++FF++ G VY+ K + Sbjct: 516 VGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAY 575 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S +RG A+IN++ L E+IT ++P E E ++ Y+ AT++G V++ + D Sbjct: 576 EIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYE---DDKYLFMATRNGIVKKTPIKD 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + I ++G A+ L D+++ V+ DILL TK GQC+RF + +R GR ++GV Sbjct: 633 YENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRS-TGRTTMGV 691 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G++LA D +I+M +A + + R + Sbjct: 692 IGMNLAPNDVIIAMQTASMGEAVLLVSSNGLGKRT--RIDEFTTQNRGGKGVKCYKITEK 749 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + ++ ++ +G R D + R G++ ++ + ++ ++ Sbjct: 750 SGNLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGV---SVASI 806 Query: 845 FPVNDNDQII 854 V ++ ++ Sbjct: 807 AKVVEDKTLM 816 >gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] Length = 764 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 410/746 (54%), Positives = 527/746 (70%), Gaps = 14/746 (1%) Query: 1 MTEHIISSDEEEEKGIT---------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51 M E E + I SV+I EM+ SYL YA++VI+ RAIPDLRDGLKP Sbjct: 1 MNET--PETPENDDEIPAARPVFDGPSVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKP 58 Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 VHRRI++ M + G+ +K Y K A+ G+VMG YHPHG++AIYDAL RMAQD+S+ L LI Sbjct: 59 VHRRIIYSMYEKGITHDKTYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLI 118 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 +GQGNFGS+DGD AA RYTE RL K A F+ DL K+TV+F NYDG +EP VL AR+ Sbjct: 119 DGQGNFGSMDGDSAAAMRYTESRLDKVASFMTSDLDKETVNFIDNYDGKEREPTVLPARF 178 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231 PN+LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+ + L+E I GPDFPTG ++ Sbjct: 179 PNMLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIM 238 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 LGR G + AY GRGS+++R + +E+ DR I++ EI YQVNKA+M+EKIAE VREK Sbjct: 239 LGRAGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREK 298 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 +I IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F NM+ALNG +PE+ Sbjct: 299 KIEGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQ 358 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 TL L F+ FRE+VV RRT +LL KAR+R+H+L GLA+AV N+DEVV IR S + Sbjct: 359 LTLRKFLTYFIDFREDVVARRTAFLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAA 418 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR +LM R W A I I LIDD ++T DGT LSE Q RAILELRL RLT +G Sbjct: 419 EAREKLMTRRWPAESILPYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVK 478 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ +EL L +IKE L+IL SR R++ II EL VKD+ PRRT IV+ DM+DED Sbjct: 479 EVTDELEELAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDED 538 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I REDMVVTV+ GY+KR PL +R+QRRGGKG SG+ ++ED VT LF+ +THT +LF Sbjct: 539 LIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLF 598 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VYK K WRLP GS ++GKA++NIL + G I IMP DE+ W++L VVFA Sbjct: 599 FTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRF 708 T G VRRNKLSDF + R+GKIAMK + +++ + ++D++L T G+ +RF Sbjct: 659 TSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTNSGRAIRF 718 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQ 734 P + +RVF R SVGVRGI L ++ Sbjct: 719 PATDVRVFNSRASVGVRGIKLNGDEK 744 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 14/235 (5%) Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F R+ + D DE L E+ ++ T G R P+ R R Sbjct: 517 DQFAVPRRTEIVDWSGDMDDEDLIAR----EDMVVTVTSGGYIKRTPLVDFRS-QRRGGK 571 Query: 723 GVRGISLAKGDQVISMAIVLH------ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GV G+ + D V ++ + D + R G Sbjct: 572 GVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPI 631 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 I E + + ++ + G +R DF R+GK A + Sbjct: 632 PVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGK--IAMKFEDDH 689 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890 L+ +++D ++LV++ G IR P ++R+ SRA+ GV DE+ Sbjct: 690 AETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDEK 744 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + +Y E + + + + + ++ ++ + + + ++L +E + Sbjct: 487 LAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMV 546 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +TV+ G+ KRT DFR R GKG+ + + + +F N + Q++ + G Sbjct: 547 VTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDV---VTTLFVANTHTQLLFFTTDG 603 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + ++ + SR +KG V I + ++ + E Sbjct: 604 MVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAE 649 >gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium] Length = 836 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 332/903 (36%), Positives = 512/903 (56%), Gaps = 88/903 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ + Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+ Sbjct: 73 RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A LL D+ KDTVDF NYDG +EP VL A +PN+L NG GIAVGM+T Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP+HNL E++ G + +IDNP L+ +I+GPDFPTGA I+ GI++ + TG+G++ Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR IE+ R +VVTEIPY VNK ++EKI ELV+ + I IAD+RDES R+G Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR +V+LNQL++ T LQ F VNM+AL P + L+ ++ + +V Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 +VR+TK++LNK ++R H+L GL IA N+DEVV II+ S N + A L + Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L E+Q +A+L++RL L+ L + ++ E L I+ C Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L IIK+EL + D+ RR+ I + +++DE I E++V+T+S GY Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +G +N++ + + ERI +++ ++ Y F TK+G V+R L++FI Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +GK+A+ D D + SV ++I + + G VRF + +RV + R + GV GI Sbjct: 642 ILSNGKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL KG+ V ++ + Sbjct: 701 SLNKGEFVNGLSTSSNG------------------------------------------- 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+V + G GK TS +R++ R+ KG++ V+ G +V V Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDR--TGPVVTTTTV 765 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 N+ ++++S G ++R + E+ + T GV + +ER+ V +E E + Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKEMQ 825 Query: 908 STE 910 + Sbjct: 826 LED 828 >gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni] Length = 844 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 351/913 (38%), Positives = 535/913 (58%), Gaps = 122/913 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS E VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RR + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E I I+P + + + + F TK+G V+R LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD D +++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDGLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKVLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVV 881 IR A R T GV+ Sbjct: 816 SIRKAGRNTSGVI 828 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 103/290 (35%), Gaps = 76/290 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ DE++++ + +N+ T + +F +S ++ + + + L Sbjct: 386 IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 436 Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +++ + +A ++ A +E + + R + + + +E + + Sbjct: 437 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 496 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826 ++L E ++T++ +G+ KR S + R GKG Sbjct: 497 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 556 Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856 ++ + + + +V + + ++I+ + Sbjct: 557 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFDESKSLCFF 616 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G + R ++E IR GV + +++ +V+ ++ E Sbjct: 617 TKNGIVKRTNLSEYQNIRSV-----GVRAINLDENDGLVTAIIVQRDEDE 661 >gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii] gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii] Length = 880 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 342/921 (37%), Positives = 507/921 (55%), Gaps = 88/921 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 V + E SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K + Sbjct: 19 NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVD 121 KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +SLR LI G GNFGS+D Sbjct: 79 KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLD 138 Query: 122 GDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 GDP AA RYTECRL + + L DL DTVDF PN+DGS +EPVV+ AR PNVL+NG Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD A+I NP+ ++ LME + GPDFPTG ILG +GI +A Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADA 258 Query: 241 YATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 + TGRG+I +RG + E + R IV+TEIPY NK+ ++ KIAELV K + ++D Sbjct: 259 FRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVSD 318 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V + +PE F++ +L Sbjct: 319 IRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLL 378 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + F+ FR VV RR + L +A R H+L G + LD+VV++++ + + +A + L Sbjct: 379 EIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ 438 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + LS Q A+L + L R+T L R+ I E N Sbjct: 439 K--------------------------DFGLSAAQAEALLGMPLRRITSLERNKILEEHN 472 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537 SL + + ++LS++ R+L ++++E L++K+E +PRRT + E +++ D I + Sbjct: 473 SLLAQASDLRELLSNKQRVLKVVEKEALALKNEFGSPRRTVLEEYGDGRIDNIDVIPNNE 532 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +T+S GY+KR+ + AQRRG G+SG M+ D + D F+ H VL FS G Sbjct: 533 SFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGV 592 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY + +++P S + G +I +LS+ GERIT+I P E + ++V T G + Sbjct: 593 VYSFRAYQVPECSRTSTGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYI 649 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R +L F I G +A++L DE+ V TQ + I + ++ G ++ P R Sbjct: 650 KRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMR 708 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + G+R + + +GD++ ++ IV + + + + + Sbjct: 709 -RGARGLRAMRIKEGDEIAAIDIVPGSVWKESPTLLCTHVLCNRSKASEA---------- 757 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++L VSE G KR F + G+ + Sbjct: 758 --------------------PWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDR 797 Query: 838 IGALVAVFPV-------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 L ++F V N++I++ + G R V EI I SR +G+ + D++ Sbjct: 798 ---LASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDK 854 Query: 891 VVSVERIRESEIV--DEAEST 909 V SV + S+ DE S Sbjct: 855 VKSVSVVAASDSPAHDEPPSD 875 >gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] Length = 847 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 350/855 (40%), Positives = 527/855 (61%), Gaps = 38/855 (4%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 + + +E ++ +SI E+Q SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G Sbjct: 1 MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + +N+ YVK ARI G+V+GKYHPHG+ A YD + RMAQ++SLR L++GQGNFGS+DGD Sbjct: 61 IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE R+ + ++ DL KDTVDF PNYD S EP V+ +R PN+L+NG GIAV Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HN+ EV+DG +A+ D+P+I + LM +I GPDFPTGA I GR+GI+ AY TG Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYICGRSGIREAYETG 240 Query: 245 RGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RG +V+R ++H+E + RE I++TEIPYQ NKA ++EKIA LV++K+I I+++RDES Sbjct: 241 RGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDES 300 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIELKR +++V++NQLY+ T +Q F + ++A+ KP L IL+ F+ Sbjct: 301 DRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNKPMILNLKQILEHFLV 360 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 R+ VV RRT + L KA ++AH+L GL +A+ NLDEVV +I+ + NP A+ L++R Sbjct: 361 HRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVER--- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS +Q + IL++RL RLTGL R I ++ ++ E Sbjct: 418 -----------------------FELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQE 454 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I IL+ + +LGIIK E L +++ RRT I++ + D+ ED I EDM VTV+ Sbjct: 455 ITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H G++KR P ++YR+Q RGGKG SG +EDF++DL++ ST + LFF++ G V+ KV Sbjct: 515 HSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKV 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ ARGKA++N+L L++ E++ I+P E + ++ TK G +++ L Sbjct: 575 YQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQ 634 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F + R GK A+ ++ DEI+ ++ +LL T G+ + F S +R GR + G Sbjct: 635 EFRRPLRKGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTM-GRTAAG 693 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI+L + D+V+S + D+ S + S Sbjct: 694 VRGITLGEDDEVVSAIVASSNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERN 753 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + E+ I+ +++ G R + + RI RS +G+R ++ + +V+ Sbjct: 754 --GDLISAKQVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEK---VVS 808 Query: 844 VFPV-----NDNDQI 853 + V + +D++ Sbjct: 809 MDTVARDESDLDDEV 823 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 104/250 (41%), Gaps = 18/250 (7%) Query: 533 IVREDMVVTV---SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED T+ + G +K+ L +R R GK + DE L +V Sbjct: 610 FEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRALTINEGDEIIGAYLLN--GDDTV 667 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 L +S G + A A + ++L + + + + + + +N ++ Sbjct: 668 LLCTSKGKAIHFHESDVRTMGRTA---AGVRGITLGEDDEVVSAI------VASSNDSIL 718 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCV 706 T++G +R+ + ++ R GK + + + +S + + E +I++ G+ + Sbjct: 719 VVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISAKQVSDEEEIMIIADSGKMI 778 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 R + +R+ GR++ GVR I+L ++V+SM V ++D D+ + + + Sbjct: 779 RMNLENVRII-GRSTQGVRLINLEGDEKVVSMDTVARDESDLDDEVDGTAVATTELAADV 837 Query: 767 GDTEEITSLK 776 +++ + Sbjct: 838 NIIPDVSEDE 847 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 8/168 (4%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 VL + + + + E + + + + + ++L E Sbjct: 451 VLQEITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMA 510 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVFPVNDNDQIILVSDK 859 +TV+ GF KR + +R +R GKG+ + + I L VA D + ++ Sbjct: 511 VTVTHSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTL----DTFLFFTNY 566 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 G + V ++ + R +G V + + E++ ++ + E D Sbjct: 567 GKVFWRKVYQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDED 614 >gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1] gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1] Length = 855 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 334/856 (39%), Positives = 505/856 (58%), Gaps = 45/856 (5%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EPNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ WS R +L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL + + +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG GIAVGMAT Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E++ V +IDN D ++ LMEI++GPDFPTGA ILG+ GI+ AY T Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R V+ IE + +I+VTEIPY VNKA ++EKIAELV++KR+ I DLRDES Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+++LNQL ++T LQ F VNM+AL +P+ L +L ++ Sbjct: 302 NREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLD 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +++VV RRTKY LNKA +RAH+L GL A+ +DEV+RIIR S A+ LM+R Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AI+++RL LTGL R+ + NE L Sbjct: 419 -----------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ ++LL +IK+E+ + D+ RRT+I DM ED I ED+VV ++ Sbjct: 456 IAELRGILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAIT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +LGY+KR+ +++Q RGGKG G+ DED++ +L + +TH ++FF++ G VY+ K Sbjct: 516 NLGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N++ L GE+IT +P E + + ++ ATK+G V+R + Sbjct: 576 YEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFD---EDKFLFMATKNGMVKRTPMK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L TK G C+RF + +R GR S+G Sbjct: 633 EYENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVR-ITGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ D++I M + + + + S + Sbjct: 692 VIGMKFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS--QLRGGKGVRCYRITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + + I+ ++ +G + I R+ G++ D+ E G +VA Sbjct: 750 KTGYLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDP--ESGVVVA 807 Query: 844 VFPV------NDNDQI 853 ++++++ Sbjct: 808 SIAKVRESSQDEDEEL 823 >gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10] Length = 855 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 333/856 (38%), Positives = 505/856 (58%), Gaps = 45/856 (5%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EPNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ WS R +L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL + + +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG GIAVGMAT Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E++ V +IDN D ++ LMEI++GPDFPTGA ILG+ GI+ AY T Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 G+G I +R V+ IE + +I+VTEIPY VNKA ++EKIAELV++KR+ I DLRDES Sbjct: 242 GKGKIRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+++LNQL ++T LQ F VNM+AL +P+ L +L ++ Sbjct: 302 NREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLD 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +++VV RRTKY LNKA +RAH+L GL A+ +DEV+RIIR S A+ LM+R Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AI+++RL LTGL R+ + NE L Sbjct: 419 -----------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ ++LL +IK+E+ + D+ RRT+I DM ED I ED+VV ++ Sbjct: 456 IAELRGILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAIT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 +LGY+KR+ +++Q RGGKG G+ DED++ +L + +TH ++FF++ G VY+ K Sbjct: 516 NLGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKA 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N++ L GE+IT +P E + + ++ ATK+G V+R + Sbjct: 576 YEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFD---EDKFLFMATKNGMVKRTPMK 632 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DI L TK G C+RF + +R GR S+G Sbjct: 633 EYENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVR-ITGRVSMG 691 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ D++I M + + + + S + Sbjct: 692 VIGMKFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS--QLRGGKGVRCYRITE 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + + I+ ++ +G + I R+ G++ D+ E G +VA Sbjct: 750 KTGYLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDP--ESGVVVA 807 Query: 844 VFPV------NDNDQI 853 ++++++ Sbjct: 808 SIAKVRESSQDEDEEL 823 >gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37] gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 836 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 332/903 (36%), Positives = 511/903 (56%), Gaps = 88/903 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ + Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+ Sbjct: 73 RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K A LL D+ KDTVDF NYDG +EP VL A +PN+L NG GIAVGM+T Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP+HNL E++ G + +IDNP L+ +I+GPDFPTGA I+ GI++ + TG+G++ Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR IE+ R +VVTEIPY VNK ++EKI ELV+ + I IAD+RDES R+G Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+KR +V+LNQL++ T LQ F VNM+AL P + L+ ++ + +V Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 +VR+TK++LNK ++R H+L GL IA N+DEVV II+ S N + A L + Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L E+Q +A+L++RL L+ L + ++ E L I+ C Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L IIK+EL + D+ RR+ I + +++DE I E++V+T+S GY Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +G +N++ + + ERI +++ ++ Y F TK+G V+R L++FI Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +GK A+ D D + SV ++I + + G VRF + +RV + R + GV GI Sbjct: 642 ILSNGKRAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL KG+ V ++ + Sbjct: 701 SLNKGEFVNGLSTSSNG------------------------------------------- 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+V + G GK TS +R++ R+ KG++ V+ G +V V Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDR--TGPVVTTTTV 765 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 N+ ++++S G ++R + E+ + T GV + +ER+ V +E E + Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKEMQ 825 Query: 908 STE 910 + Sbjct: 826 LED 828 >gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis] gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] Length = 911 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 328/902 (36%), Positives = 525/902 (58%), Gaps = 91/902 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E G+ +++ M+ S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ + Sbjct: 72 DKEINGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTA 131 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGSVDGD AA R Sbjct: 132 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMR 191 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A ++D + K+TVDF NYD + +EPVVL +R+PN+LV+G GIAVGMATN Sbjct: 192 YTEARMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATN 251 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D A+ NP+I++ LME I+ PDFPTG +I + G+ AY+TGRGSI Sbjct: 252 IPPHNLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIFNKKGLIEAYSTGRGSIT 311 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR +HI++ S + +I+VTEIPY+V K ++EKI+EL+++K+I IAD RDES+R G R Sbjct: 312 IRSKAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIR 371 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+ +++LN L++ T LQS +S NM+AL +P+ L L+ ++ + EVV Sbjct: 372 IVIDIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNEPKLLNLKACLEVYLKHQIEVV 431 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L K R RAH+L GL I + N+D V++II+ S + A+ +L Q Sbjct: 432 SRRLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQ---------- 481 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+QT+AI++++L RLTGL + + ELN + I + Sbjct: 482 ----------------AFNLSEIQTKAIVDMKLGRLTGLAIEKMNEELNEVHERIANYIK 525 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL + L+ +I +EL +K+ RR+ I +++ED I + D+V+T+++ GY+ Sbjct: 526 ILGDHNLLINLIIEELQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYI 585 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR QRRGG G S +D + D+ + +THT +L F+ L VY+ + +P+ Sbjct: 586 KRLDIEEYREQRRGGVGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPV 645 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G+ Q++G ++N++ + + E++ I+P E + N Y++ ATK G V++ F Sbjct: 646 GTKQSKGIPIVNVIPSIQKNEKVIKILPINEYK---QNEYLLTATKKGIVKKTPTILFES 702 Query: 668 INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 INR+GKIA + D D+++ E++I + + RF + IR GR + GV+G Sbjct: 703 INRNGKIAFAIRDDDDKLIDALIVKDEDEIFIAASNNKICRFDSNEIRSM-GRMAYGVKG 761 Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I + D V+S++ Sbjct: 762 IKIDDVEDNVVSVS---------------------------------------------- 775 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ++I ++ ++G+GK T + FR + R G+ + + + G L+ Sbjct: 776 -------SSNQGKYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLN---EEKSGKLIYAA 825 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRESEIVD 904 V+ + +I+++ G IR + ++ I R TKGV + + +V+ +I + ++ D Sbjct: 826 TVHGVEDLIVLTSDGVAIRFSLKDVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDLED 885 Query: 905 EA 906 Sbjct: 886 ND 887 >gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 813 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 324/899 (36%), Positives = 492/899 (54%), Gaps = 91/899 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E E + +SI E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEISTP----EGGVLVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G+ ++ KCA+I G+V+G +HPHG+A++YDAL R+ QD+SLR +I QGNFG++ Sbjct: 57 EEKGLRFSGPTRKCAKIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 GDPPAA RYTE ++ + A +++D+ K+TV F PN+D S EP VL R+P +L NG Sbjct: 117 GGDPPAAYRYTEAKMARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGM TN+P HNL E+ A I+NP++ + L + I GPDFPTG +I G+ GI+ + Sbjct: 177 GIAVGMTTNMPPHNLREIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQS 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG IV+R IE S R+ I+ TE+PYQVN ++ +I EL R K I IA++ Sbjct: 237 YETGRGKIVVRARFTIETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVN 296 Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DE SDR G R+V+ELK+G A V+LN L+ T LQS F+V +AL +P TL +++ Sbjct: 297 DETSDRTGLRIVVELKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVR 356 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FV R +VV RR + L KA++R H++ L A+ +D+++ +IR S N E A++ L + Sbjct: 357 YFVEHRVDVVTRRAHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLRE 416 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + VQ +AI+++++ RLTGL + +R EL Sbjct: 417 Q--------------------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKD 450 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDM 538 L I ++L+S ++LG++K+E + D RRT I + ++ ED I +E+M Sbjct: 451 LTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEM 510 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ +SHLGY+KRVP+S YR Q RGGKG S + DF++ +F STH V+F +S G Sbjct: 511 VILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRA 570 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P RG + ++L + E IT I+ E N YV AT G V+ Sbjct: 571 YWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFS---NKSYVFMATARGVVK 627 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +F+ G IA+KL D ++S E++++L T+ G+ +R +R G Sbjct: 628 KVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREM-G 686 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RNS GV GI L D V + V Sbjct: 687 RNSSGVIGIKLTSEDLVAGVLRVS------------------------------------ 710 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +++ +L ++E G+GKR S +F + R G + ++ + Sbjct: 711 -----------------EQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIY--TQTDRK 751 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GA++ V D D+ + ++ +G IRV V I + R +GV + + VV + + Sbjct: 752 GAIIGALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 13/251 (5%) Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAI 713 G V++ + + + + E L VE +E ++L + LG R P+SA Sbjct: 470 GVVKKETRDIADMFGDDRRTDI-VSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAY 528 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI---CYMKHMSAQRRLISGDTE 770 R R G +LA D + + D Y + + Sbjct: 529 RN-QNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRG 587 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRA 829 + + I+ + ++ + +G K+ ++ +F R GI A Sbjct: 588 SHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTR---GIIA 644 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 +S LV+ V D D+++L++ +G +R+ E+R R + GV+ ++ Sbjct: 645 LKLS---GGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSED 701 Query: 890 RVVSVERIRES 900 V V R+ E Sbjct: 702 LVAGVLRVSEQ 712 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 55/209 (26%) Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + K + ++ + + V I ++ KE+ ++ +S G Sbjct: 459 EELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLG 518 Query: 808 FGKRTSSYDFRISNRSGKG-------------------------------------IRAT 830 + KR +R NR GKG + Sbjct: 519 YIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGI 578 Query: 831 DVSKI-NEIGALVAVFPVNDNDQI---------------ILVSDKGTLIRVPVNEIRIAS 874 S N + ++ V +++I + + +G + +V + + Sbjct: 579 PESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTD--NFVN 636 Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIV 903 T+G++ + + +VS +++ + V Sbjct: 637 AKTRGIIALKLSGGDTLVSAVLVQDEDEV 665 >gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii] gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii] Length = 880 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 341/921 (37%), Positives = 506/921 (54%), Gaps = 88/921 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 V + E SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K + Sbjct: 19 NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVD 121 KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +SLR LI G GNFGS+D Sbjct: 79 KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLD 138 Query: 122 GDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 GDP AA RYTECRL + + L DL DTVDF PN+DGS +EPVV+ AR PNVL+NG Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD A+I NP+ ++ LME + GPDFPTG ILG +GI +A Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADA 258 Query: 241 YATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 + TGRG+I +RG + E + R I++TEIPY NK+ ++ KIAELV K + ++D Sbjct: 259 FRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVSD 318 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V + +PE F++ +L Sbjct: 319 IRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLL 378 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + F+ FR VV RR + L +A R H+L G + LD+VV++++ + + +A + L Sbjct: 379 EIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ 438 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + LS Q A+L + L R+T L R+ I E N Sbjct: 439 K--------------------------DFELSAAQAEALLGMPLRRITSLERNKILEEHN 472 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537 SL + ++LS++ R+L ++++E L++K+E +PRRT + E +++ D I + Sbjct: 473 SLLAQASNLRELLSNKQRVLRVVEKEALALKNEFGSPRRTVLEEDGDGRIDNIDVIPNNE 532 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +T+S GY+KR+ + AQRRG G+SG M+ D + D F+ H VL FS G Sbjct: 533 SFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGV 592 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY + +++P S + G +I +LS+ GERIT+I P E + ++V T G + Sbjct: 593 VYSFRAYQVPECSRTSAGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYI 649 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R +L F I G +A++L DE+ V TQ + I + ++ G ++ P R Sbjct: 650 KRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMR 708 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + G+R + + +GD++ ++ IV + + + + + Sbjct: 709 -RGARGLRAMRIKEGDEIAAIDIVPGSVWKESPTLLCTHVLCKRSKASEA---------- 757 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++L VSE G KR F + G+ + Sbjct: 758 --------------------PWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDR 797 Query: 838 IGALVAVFPV-------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 L ++F V N++I++ + G R V EI I SR +G+ + D++ Sbjct: 798 ---LASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDK 854 Query: 891 VVSVERIRESEIV--DEAEST 909 V SV + S+ DE S Sbjct: 855 VKSVSVVAASDSPAHDEPPSD 875 >gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] Length = 833 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 364/839 (43%), Positives = 516/839 (61%), Gaps = 40/839 (4%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I DEM+ SY+ YA++VI+GRAIPD+RDGLKPVHRR+LF M +MG WNK Y K ARI Sbjct: 12 VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+++GKYHPHG+AA YD + R+AQD+S+R LI+GQGNFGS+D DPPAA RYTE R+ + Sbjct: 72 GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +L DL KDTVDF PNYD S EP +L +R P +L+NG GIAVG+ATNIP HN+ EV Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + G +A+I NP++ L+ +M+ I GPDFPT I GR GI +AY TGRG I +R IEK Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRAKVVIEK 251 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 DRE IVVTEIPYQVNKAA++EKI+ELV+EK+I I+DLRDESDR+G R+VI+LKR Sbjct: 252 NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +++VILNQLY++T ++S F + M+A+ +P F LI ILK+F+ FR+ V+VRRT + + Sbjct: 312 ENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTFEV 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NKAR+RAH+L GL IA+ N+DEVV +I+ S +P+ A L R Sbjct: 372 NKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSR----------------- 414 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+++Q RAIL++RL RLTGL + I+ E ++L EI+ IL ++ Sbjct: 415 ---------FSLTDIQARAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKV 465 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L +I E+ + D RRT IV D++ ED I E+MVVT S GY+KR P S+YR Sbjct: 466 LEVIISEMEEIIDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYR 525 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGG+G+ G++ ++ED V LFI STH VL F++ G +Y KV+++P A+GK Sbjct: 526 TQRRGGRGKVGMMTKEEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKP 585 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N++++ ER+ ++P E V+ AT+ G V++ L+ + G IA+ Sbjct: 586 IVNLINIGPDERVAAVLPVRSFE---EGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALS 642 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 +D DE++ V+ + D+ L T+ G+ +RF IR GR + GVRGIS+ D VI Sbjct: 643 IDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRTM-GRTARGVRGISMDSDDAVIG 701 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M I +A +A + +G + + Q E Sbjct: 702 MDIPREGNAIVTVSEKGCGKRTAVSEYRLQKRGGKGMINLRIVPKGGLVADILQVTG--E 759 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP----VNDNDQ 852 + +L +S G R D + +R +G++ +++ LV + V + + Sbjct: 760 EDLLLMSNSGKIIRMKVEDVPLIHRVTQGVKLI---ELDAEEQLVGMTSAEREVREEED 815 Score = 94.1 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 101/256 (39%), Gaps = 20/256 (7%) Query: 657 VRRNKLSDFIQINRSGKI----AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 VRR + I + LD+ DE+++V ++ C RF ++ Sbjct: 364 VRRTTFE-VNKARERAHILEGLIIALDNIDEVVAVIKASKSPQ---EAASALCSRFSLTD 419 Query: 713 IRVFAGRNSVGVRGISLA--KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDT 769 I+ R + +R L + ++ +L + + + + Sbjct: 420 IQA---RAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVIISEMEEI 476 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + + + + + + +++ +E+ ++T S+ G+ KR S +R R G+G Sbjct: 477 IDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVG 536 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886 + + + L F + +D +++ ++ G L + V +I A R KG V + + Sbjct: 537 MMTKEEDVVERL---FIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIG 593 Query: 887 KDERVVSVERIRESEI 902 DERV +V +R E Sbjct: 594 PDERVAAVLPVRSFEE 609 >gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 853 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 327/900 (36%), Positives = 519/900 (57%), Gaps = 88/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 40 ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS + Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E Sbjct: 448 --------------AHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I+ S +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 ++ L YR Q RGG G +D + L I +T + +L SS ++K + ++P G Sbjct: 554 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q +G ++N++ L + E I+ ++P ++N +++ + GN+++ LS F I Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670 Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GKIA+KL D ++S + +IL+ + G R+ I +R +GR ++GV+GI Sbjct: 671 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +G ++I Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 FI ++S+KGFGK+T ++R++ R+ KG+ + D + G LV + + Sbjct: 742 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +N + I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] Length = 950 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 354/910 (38%), Positives = 519/910 (57%), Gaps = 79/910 (8%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I + E SY+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ K Y Sbjct: 97 DESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DPPAA RYT Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIAVGMATNI Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY TGRG +V+ Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336 Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RDESDR G Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF+ FR V Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L+ A+ R H + G+ + + N+DEV+++I+ Sbjct: 457 VERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKN---------------------- 494 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 SS + LSE Q AILE+ L RLT L R + +E +SL +I + Sbjct: 495 ----ASSHSSASAALQSEYGLSEKQAEAILEITLRRLTTLERKKVTDESSSLTEQITKLE 550 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ +S GY Sbjct: 551 QLLSTRANILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAISEKGY 610 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK++ + Q RG G+S +R +D ++D + H VLFFS G VY + +++P Sbjct: 611 VKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A G L+ ILS+++GER+T+I+P E + Y++ T +G +++ L F Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 727 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA++L+S DE+ V C+ ++ + + ++ G V +R + RN+ GV + Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLS-RNTKGVTAM 786 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D++ SM I+ + E SE Sbjct: 787 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 813 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + ++L V E G+GKR FR S + G+ ++ L AVF V Sbjct: 814 DASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE---DDRLAAVFVV 870 Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++Q++LVS GT+ R+ V +I I SR +GV++ ++ S I Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930 Query: 900 SEIVDEAEST 909 ++ +E E T Sbjct: 931 AD-EEETEGT 939 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 61/280 (21%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693 + + N ++ ++ G V++ K F GK KL D + C Sbjct: 590 LEDIDVIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 649 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L + G I RN+ G V+ +S+++G++V S+ V Sbjct: 650 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 701 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +++++L ++ G K Sbjct: 702 -------------------------------------------FAEDRYLLMLTVNGCIK 718 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + S F S GI A + N L V + +D + + S G ++ + + Sbjct: 719 KVSLKLF--SGIRSTGIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGV 773 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R SR TKGV ++++ S++ I S D E +E Sbjct: 774 RTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 813 Score = 55.2 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 78/250 (31%), Gaps = 26/250 (10%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G +K+V L ++ R G + DE + ++ Sbjct: 702 FAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKW---VRCCSSDDLVAM 758 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645 +S + + L I+P + Sbjct: 759 ASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDASIV 818 Query: 646 -----LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC-------- 690 +++F ++G +R LS F + + K D + +V Sbjct: 819 KQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDG 878 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + ++L ++ G R + I R + GV + L ++ S +++ AD + E Sbjct: 879 ESDEQVVLVSQSGTVNRIKVRDI-SIQSRRARGVILMRLDHAGKIQSASLISAADEEETE 937 Query: 751 RICYMKHMSA 760 + + A Sbjct: 938 GTPTNETLEA 947 >gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] Length = 932 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 349/895 (38%), Positives = 522/895 (58%), Gaps = 62/895 (6%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K AR G+ Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL K A Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNLGE +D Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R +E+ Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK+ A Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y L KA Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +RAH+L GL IA+ N+DEV+ IIR S + A + +R Sbjct: 451 EERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER-------------------- 490 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L++ QT AILE+RL RLTGL I +EL L +I +LS + I Sbjct: 491 ------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDI 544 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+EL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ YR Q+ Sbjct: 545 IKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG A++N Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE I+ ++ + ++ Y++FAT+HG V++ + + + R G IA+ L Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ +V+ M I Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + + + ++ ++ I Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + +SE+G RT RS +G+ + + + A+ +S +G Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885 Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910 + G V ++ + + E E V+EAE+ E Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928 >gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] Length = 818 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 339/898 (37%), Positives = 499/898 (55%), Gaps = 85/898 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 + E + + I DE++ +++ Y+++VI+ RA+PD RDGLKPVHRRI++ M + + Sbjct: 2 ENTENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 K KCA I G+V+GKYHPHG+A++YDAL R+ QD+S R +++ GNFG++ GDPPAA Sbjct: 62 GGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K A +++D+ KDTVD PNYD + +EP VL +++P +L NG GIAVGMA Sbjct: 122 YRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV A IDN +I +D L+ I+GPDFPTG +I G+ GI +AY TGRG Sbjct: 182 TNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIFGKHGIADAYRTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306 I++RG +IE + E IV TE+PY VN + EKI EL R+K I I+ + DE SDR Sbjct: 242 ILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDRS 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI LKRGA V++NQL+ T+LQS F V +AL +P+ L I+K FV R+ Sbjct: 302 GMRIVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKGRPQILNLKQIIKCFVDHRD 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+ RR + LNKAR R H+L L AV +DEV+++IR S + A+ LMQR Sbjct: 362 EVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQR------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 E+Q AI+E+RL RLT L D++R E+ + I Sbjct: 416 --------------------FGFDEIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAH 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545 C D+L+ ++L IIK E + ++ R+T IV + + ED I EDMV+ +S L Sbjct: 456 CEDLLAHHEKILAIIKDETNELSEKYGDDRKTDIVAGEVESINVEDLIKEEDMVILISKL 515 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRV +S Y++Q RGGKG + +ED++ +F+ STH ++F ++ G Y KV Sbjct: 516 GYIKRVSVSQYKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHE 575 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S +RG + ++L++N E ITTI+ E N Y+ AT +G V++ SDF Sbjct: 576 IPEASKTSRGSHIKSLLAVNANEDITTIVSLKEFS---ENNYLFMATANGVVKKTPTSDF 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 G A++LD D ++S T ++++LL ++ GQ +R +R GR+S GV Sbjct: 633 KNAKSRGMQAVRLDEGDTLVSAILSTGKDELLLVSRRGQALRINEEDVRPM-GRSSRGVA 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L++GD++ S + Sbjct: 692 GLKLSEGDELCSAIRIH------------------------------------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + IL V+EKG GKR S +F R G + + + G ++ Sbjct: 709 --------TEPDSKILVVTEKGIGKRVDSAEFNAHGRGTGGQKI--FGNVEDKGEIIGAL 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D D I+ ++ +GT +RV +I + R G+ + S + VV V+RI E Sbjct: 759 CVRDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDEDE 816 >gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6] gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6] Length = 876 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 341/929 (36%), Positives = 489/929 (52%), Gaps = 103/929 (11%) Query: 1 MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47 M++ + + + V + EMQ SYL YA+ VI+GRA+PD+RD Sbjct: 1 MSDETRENPATDAGNPETVLEGDVLIDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60 Query: 48 GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107 GLKPVHRR+L+ M G ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R Sbjct: 61 GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120 Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167 L GQGNFGS D AA RYTE ++ A ++ D+ ++TVDF+ NYDG QEP +L Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180 Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI----IRGP 223 AR+PN+LVNG GIAVGMATNIP HNL EV DG + NP + L+E ++GP Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPAATREELLEELLRRVKGP 240 Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283 DFPTGA ILG GI++AY TGRGS+ +R V ++E+ +R +VVTE+PYQ N + K Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSVTMRAVVNVEELQ-NRTCLVVTELPYQANPDNLAIK 299 Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342 IAELV++ +I IADLRDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+ Sbjct: 300 IAELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANML 359 Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402 A+ P +L ++ +V + +V+ RRT+Y L KA + AH+L L A+ LDEV+ Sbjct: 360 AIVDGVPRTLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419 Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462 +IR S E AR LM+ + + E+Q RAIL+++L Sbjct: 420 LIRASNTTEAARDGLME--------------------------LLDIDELQARAILDMQL 453 Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 RL L R I++ + L I E IL+S R II EL + D+ RRT+I+ Sbjct: 454 RRLAALERQKIQDRHSELEALIAEYNAILASEERQREIISTELGEIVDKHGDDRRTKILM 513 Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581 DM ED I E+MVVT++ GYVKR YR+Q+RGGKG G +R +D V F Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573 Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + +TH +LFF++LG VY+ K + L A+G+ + N+L+ E I ++ + + Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLLAFQPDEHIAQVLDLKDYQ- 632 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 + Y+V ATK G V++ +L+ D Sbjct: 633 --QSPYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 S GV I+L GD+++S +V D + Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLFLVSRMGQSIRFTA 699 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 TS E ++ F+ V+E G+ KRT+ ++R+ Sbjct: 700 TDDALRPMGRATSGVT-GMKFREDDELLAADVVTDGSFVFIVTEGGYAKRTAVEEYRLQG 758 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+ + E G LV V + D++++V + G ++R V + R T GV+ Sbjct: 759 RGGLGIKVGKYQE--ERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 K++R++ V R E + DE + + Sbjct: 817 FAKPDKNDRIIEVARNSERGLEDEESAED 845 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 100/259 (38%), Gaps = 17/259 (6%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L Y R G + +RD D + +VS + Sbjct: 631 YQQSPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLFLV 688 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S +G + + P R + + + + + + + +V T Sbjct: 689 SRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVT------DGSFVFIVT 741 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708 + G +R + ++ ++ G + +K+ E ++ +E+++L+ + G+ VR Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRS 800 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ + GR+++GV K D++I + +++ ++ ++ + Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRII--EVARNSERGLEDEESAEDDVTLAEESPAFV 857 Query: 769 TEEITSLKNDSSVEGNISE 787 +E+ + + ++E Sbjct: 858 SEDASGDAEPNDDNTEVTE 876 >gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 868 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 327/900 (36%), Positives = 519/900 (57%), Gaps = 88/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 55 ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS + Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 462 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E Sbjct: 463 --------------AHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I+ S +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 ++ L YR Q RGG G +D + L I +T + +L SS ++K + ++P G Sbjct: 569 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q +G ++N++ L + E I+ ++P ++N +++ + GN+++ LS F I Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 685 Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GKIA+KL D ++S + +IL+ + G R+ I +R +GR ++GV+GI Sbjct: 686 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 744 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +G ++I Sbjct: 745 KLEEGHKIIGAC------------------------------------------------ 756 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 FI ++S+KGFGK+T ++R++ R+ KG+ + D + G LV + + Sbjct: 757 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +N + I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 809 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868 >gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana] gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor Length = 950 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 356/910 (39%), Positives = 517/910 (56%), Gaps = 79/910 (8%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I + E SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ K Y Sbjct: 97 DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DPPAA RYT Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216 Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIAVGMATNI Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY TGRG +V+ Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336 Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RDESDR G Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF+ FR V Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I Sbjct: 457 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELIT----------------------- 493 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 SS T LSE Q AILE+ L RLT L R +E +SL +I + Sbjct: 494 ---KASSHSSATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 550 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547 +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ VS GY Sbjct: 551 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 610 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ + Q RG G+S +R +D ++D + H VLFFS G VY + +++P Sbjct: 611 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A G L+ ILS+++GER+T+I+P E + Y++ T +G +++ L F Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 727 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA++L+S DE+ V C+ ++ + + ++ G +R + RN+ GV + Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 786 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D++ SM I+ + E SE Sbjct: 787 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 813 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + ++L V E G+GKR FR S + G+ ++ L AVF V Sbjct: 814 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE---DDRLAAVFVV 870 Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++Q++LVS GT+ R+ V +I I SR +GV++ ++ S I Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930 Query: 900 SEIVDEAEST 909 ++ +E E T Sbjct: 931 AD-EEETEGT 939 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 61/280 (21%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693 + + N ++ ++ G V+R K F GK KL D + C Sbjct: 590 LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 649 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750 + +L + G I RN+ G V+ +S+++G++V S+ V Sbjct: 650 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 701 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +++++L ++ G K Sbjct: 702 -------------------------------------------FAEDRYLLMLTVNGCIK 718 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 + S F S GI A + N L V + +D + + S G + + + Sbjct: 719 KVSLKLF--SGIRSTGIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGV 773 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R SR TKGV ++++ S++ I S D E +E Sbjct: 774 RTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 813 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 86/249 (34%), Gaps = 24/249 (9%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ++ ++ G +K+V L ++ R G + + D + + S+ V Sbjct: 702 FAEDRYLLMLTVNGCIKKVSLKLFSGIRSTG--IIAIQLNSGDELKWVRCCSSDDLVAMA 759 Query: 593 SSLGFVYKEKVWRLPIGSPQARG-----------KALINILSLNQGERITTIMPFPEDES 641 S G V + S +G A ++I+ + + + Sbjct: 760 SQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDASLVK 819 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC--------T 691 +++F ++G +R LS F + + K D + +V Sbjct: 820 QSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGE 879 Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 + ++L ++ G R + I R + GV + L ++ S +++ AD + E Sbjct: 880 SDEQVVLVSQSGTVNRIKVRDI-SIQSRRARGVILMRLDHAGKIQSASLISAADEEETEG 938 Query: 752 ICYMKHMSA 760 + + A Sbjct: 939 TLSNEAVEA 947 >gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] Length = 871 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 331/897 (36%), Positives = 495/897 (55%), Gaps = 90/897 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E+E + + E++ SYL YA++VI+GRA+PD RDGLKPV RR+L+GM+ +G+ N Sbjct: 2 EEQEMGRVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + Y K AR+ GEVMGKYHPHG+A+IYD + R+AQ W+LR L++GQGNFGSVDGD AA Sbjct: 62 QAYKKSARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R + +L D+ +DTVD+ PN+D S +EP+ L + PN+LVNG GIAVGMAT Sbjct: 122 RYTEARFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HNLGEV+D +ID+P+ +L LM + GPDFPTG +I+GR GI +AY TGRG I Sbjct: 182 NMPPHNLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++RG +E+ R +V+TEIPY VNK ++E IA+ V+E I ++DLRDESDRQG Sbjct: 242 IVRGRCVVEEGKR-RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGL 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V++L R +++ QLY T +QS F V + L +P L +L+ F+ +R +V Sbjct: 301 RIVLDLNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KA++R H++ GL A+ +DEV+RIIR + E A L ++ Sbjct: 361 VRRRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ-------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + SE Q +AIL++RL RLTGL RD + E+ L +I Sbjct: 413 ------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIARYQ 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLG 546 +IL+ L G+I+ EL ++ + RRT I + ED + E++V+T+S G Sbjct: 455 EILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y++R L Y Q RGGKGR G + +ED V + + +TH VL F+S G V+ K + Sbjct: 515 YLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMV 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +G+ + +SL++GE + I+ D S VV T+ G +R S+ Sbjct: 575 PET-KSGKGRKVEQFISLSEGETVVEILGRFPDNCST----VVLITRRGIAKRMDKSELQ 629 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R+G+ M LD D+I + +D+ L + +G+ +R IR GR++ GV+ Sbjct: 630 NLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTM-GRSARGVKA 688 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L K D++IS ++ Sbjct: 689 MKLGKDDEIISCEVI--------------------------------------------- 703 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + IL VS++G GK TS +F + +R+ G RA + G L Sbjct: 704 --------AGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDR--TGRLAVANT 753 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V +D++ L++ G +IR+ V+ I R G ++ + V +V I + ++V Sbjct: 754 VFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLV 810 >gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] Length = 850 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 340/847 (40%), Positives = 501/847 (59%), Gaps = 39/847 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ + Sbjct: 2 EPNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTV+F PN+D + +EPVVL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EVV V +IDN + ++ LMEI++GPDFPTGA ILGR I+ AY T Sbjct: 182 NIPPHNLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GR I +R V++IE + + +I+V+E+PY VNKA ++EKIA+LV+EK+I I + DES Sbjct: 242 GRSKIKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L ++ Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +E+VV RRT+Y LNKA +RAH+L GL IA+ ++DEV+ IIR S N A+R L +R Sbjct: 362 HQEDVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q +AI+++RL LTGL R+ I NE L Sbjct: 419 -----------------------FGLSDAQAQAIVDMRLRALTGLEREKIENEYKELQAR 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ +LL +IK E+ + D+ RRT I DM ED I ED V+ ++ Sbjct: 456 ISELKAILADEKKLLTVIKDEITVIADKYGDDRRTAIG-YDDDMSMEDLIPDEDTVIAMT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 HLGY+KR+ + +R+Q RGGKG G+ +ED++ DL + + H V+ F++ G VY+ K Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKA 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A++N+L L E+IT I+P E + Y+ ATK G V++ + Sbjct: 575 YEIPEAGRTARGTAIVNLLQLQPEEKITAIIPMREYN---EDKYLFMATKGGMVKKTPMC 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ + DI L TK G C+RF + +RV GR S+G Sbjct: 632 EYENVRKNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRV-TGRVSMG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ GD+VI M + D+ M + + + + + Sbjct: 691 VIGMRFEDGDEVIGMQMASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVI--CYKITE 748 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + I+ ++ +G R D + R+ G++ + ++I + + Sbjct: 749 KTGCLIGAKLVDDGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDI-KVAS 807 Query: 844 VFPVNDN 850 + V ++ Sbjct: 808 IAKVRES 814 >gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3] gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3] Length = 892 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 342/929 (36%), Positives = 485/929 (52%), Gaps = 103/929 (11%) Query: 1 MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47 M++ + E + V + EMQ SYL YA+ VI+GRA+PD+RD Sbjct: 1 MSDETPENPVPEAGNPDTVLEGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60 Query: 48 GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107 GLKPVHRR+L+ M G ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R Sbjct: 61 GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120 Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167 L GQGNFGS D AA RYTE ++ A ++ D+ ++TVDF+ NYDG QEP +L Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180 Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGP 223 AR+PN+LVNG GIAVGMATNIP HNL EV DG + NP L+ L+ ++GP Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPGASREELLEELLLRVKGP 240 Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283 DFPTGA ILG GI++AY TGRGS+ +R V ++E+ R +VVTE+PYQ N + K Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSVTMRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIK 299 Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342 IAELV++ +I IADLRDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+ Sbjct: 300 IAELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANML 359 Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402 A+ P +L ++ +V + +V+ RRT+Y L KA + AH+L L A+ LDEV+ Sbjct: 360 AIVDGVPRTLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419 Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462 +IR S E AR LM+ + + E+Q RAIL+++L Sbjct: 420 LIRASNTTEAARDGLME--------------------------LLDIDELQARAILDMQL 453 Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 RL L R I++ L I E +IL S R II EL + D+ RRTRI+ Sbjct: 454 RRLAALERQKIQDRHAELEALIAEYNEILGSEQRQREIISTELGEIVDKHGDDRRTRILM 513 Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581 DM ED I E+MVVT++ GYVKR YR+Q+RGGKG G +R +D V F Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573 Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + +TH +LFF++LG VY+ K + L A+G+ + N+++ E I ++ + + Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQ- 632 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 Y+V ATK G V++ +L+ D Sbjct: 633 --QAPYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 S GV I+L GD+++S +V D Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTA 699 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 TS E + F+ V+E G+ KRT+ ++R+ Sbjct: 700 TEDALRPMGRATSGVT-GMKFREDDELLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQG 758 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+ +++ E G LV V + D++++V + G ++R V + R T GV+ Sbjct: 759 RGGLGIKVAKLAE--ERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816 Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910 K++R++ V R E I E + + Sbjct: 817 FAKPDKNDRIIEVARNSERGIEGEESAED 845 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 20/273 (7%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L Y R G + +RD D + +VS +L Sbjct: 631 YQQAPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLLLV 688 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + P R + + + + + + + +V T Sbjct: 689 SRKGQSIRFTATEDAL-RPMGRATSGVTGMKFREDDELLAANVVT------DGSFVFIVT 741 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708 + G +R + ++ ++ G + +K+ E ++ +E+++L+ + G+ VR Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVAKLAEERGDLVGALIVQEEDEVLVVMEGGKVVRS 800 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI-----SMAIVLHADADYDERICYMKHMSAQRR 763 ++ + GR+++GV K D++I S + ++ D+ SA Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGIEGEESAEDDVTLAEDGGSAAEA 859 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 +E +++++ + E E+ + Sbjct: 860 AAPAVADESPAVESEDASGDAEPNEDYTEVTSE 892 >gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] Length = 932 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 349/895 (38%), Positives = 522/895 (58%), Gaps = 62/895 (6%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K AR G+ Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL K A Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNLGE +D Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R +E+ Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK+ A Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y L KA Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +RAH+L GL IA+ N+DE++ IIR S + A + +R Sbjct: 451 EERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER-------------------- 490 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L++ QT AILE+RL RLTGL I +EL L I +LS + I Sbjct: 491 ------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEI 544 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+ELL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ YR Q+ Sbjct: 545 IKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG A++N Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE I+ ++ + ++ Y++FAT+HG V++ + + + R G IA+ L Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ +V+ M I Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + + + ++ ++ I Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + +SE+G RT RS +G+ + + + A+ +S +G Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885 Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910 + G V ++ + + E E V+EAE+ E Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928 >gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 853 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 327/900 (36%), Positives = 520/900 (57%), Gaps = 88/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 40 ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS + Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E Sbjct: 448 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I+ S +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 ++ L YR Q RGG G +D + L I +T + +L SS ++K + ++P G Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q +G ++N++ L + E I+ ++P ++N +++ + GN+++ LS F I Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670 Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GKIA+KL D ++S + +IL+ + G R+ I +R +GR ++GV+GI Sbjct: 671 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +G ++I Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 FI ++S+KGFGK+T ++R++ R+ KG+ + D + G LV + + Sbjct: 742 -----FAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +N++ I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 794 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni] Length = 844 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 351/913 (38%), Positives = 535/913 (58%), Gaps = 122/913 (13%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + + ++ I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD Sbjct: 61 KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K +H LL D+ KDTVDF PNYDGS E VL +R PN+L+NG GIAVG Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGR Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R HIEK +++ IV+ E+PYQ NKA ++ +IAELV+EK+I I+++RDES++ Sbjct: 241 GRVKVRAKPHIEK-KTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLTGL R+ I NEL L EI Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV++ Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS A+GKA++N+++L E+I I+P + + + + F TK+G V+ LS++ Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKCTNLSEY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695 I G A+ LD DE+++ ++ D Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748 + TK G C++FP++ +R GR S GV I + D+++ ++ + + Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 Q IL++S KG Sbjct: 747 -------------------------------------------------QEILSISAKGI 757 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815 Query: 869 EIRIASRATKGVV 881 IR A R T GV+ Sbjct: 816 SIRKAGRNTSGVI 828 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 102/290 (35%), Gaps = 76/290 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + LD+ DE++++ + +N+ T + +F +S ++ + + + L Sbjct: 386 IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 436 Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +++ + +A ++ A +E + + R + + + +E + + Sbjct: 437 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 496 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826 ++L E ++T++ +G+ KR S + R GKG Sbjct: 497 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 556 Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856 ++ + + + +V + + ++I+ + Sbjct: 557 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFF 616 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G + ++E IR GV + +++ +V+ ++ E Sbjct: 617 TKNGIVKCTNLSEYQNIRSV-----GVRAINLDENDELVTAIIVQRDEDE 661 >gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 868 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 327/900 (36%), Positives = 520/900 (57%), Gaps = 88/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 55 ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS + Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 462 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E Sbjct: 463 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I+ S +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 ++ L YR Q RGG G +D + L I +T + +L SS ++K + ++P G Sbjct: 569 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q +G ++N++ L + E I+ ++P ++N +++ + GN+++ LS F I Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 685 Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GKIA+KL D ++S + +IL+ + G R+ I +R +GR ++GV+GI Sbjct: 686 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 744 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +G ++I Sbjct: 745 KLEEGHKIIGAC------------------------------------------------ 756 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 FI ++S+KGFGK+T ++R++ R+ KG+ + D + G LV + + Sbjct: 757 -----FAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +N++ I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 809 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868 >gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1] Length = 869 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 340/862 (39%), Positives = 493/862 (57%), Gaps = 55/862 (6%) Query: 1 MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M + + E++ + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR Sbjct: 1 MADENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ G Sbjct: 61 VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTEC++ + ++ D+ +DTVDF+ NYDG QEP VL AR+PN+L Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231 +NG GIAVGMATNIP HNL EV +G + NP+ + L+ + I+GPDFPTGA++ Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALV 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+PYQVN + +KIA+LV+E Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKEA 299 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 RI IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 E AR LM + + E+Q AILE++L RL L R Sbjct: 420 EIARGGLM--------------------------DLLTIDEIQANAILEMQLRRLAALER 453 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I E + L +I E IL+S R II +EL ++ ++ RRT+++ DM E Sbjct: 454 QKIIQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYGDDRRTKLIPFDGDMSIE 513 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVT+S GYVKR YR+Q+RGGKG G ++ +D V F+ +TH +L Sbjct: 514 DLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP +ARG+ + N+L+ E+I I+ + E Y+V Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYLVL 630 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705 ATK G V++ L D+ G IA+ L DE++ E + ++D+LL +K Q Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQS 690 Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-ADYDERICYMKHMSAQR 762 +RF + +R GR + GV+G+S +GD+++SM +V Y K + Sbjct: 691 IRFTATDESLRPM-GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDE 749 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 + G G++ E + IL ++ G RT + R + R Sbjct: 750 YRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE---ILAITLSGGVIRTRVNEVRETGR 806 Query: 823 SGKGIRATDVSKINEIGALVAV 844 G++ ++ K A+V + Sbjct: 807 DTMGVQLINLGKR---DAVVGI 825 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 58/221 (26%) Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M+I + + + +++ + + Sbjct: 509 DMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTT 568 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKG-----------------IRAT--------- 830 ++L + KG R +Y+ + R +G I A Sbjct: 569 HHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAAPYL 628 Query: 831 ----------DVSKIN----EIGALVA----------------VFPVNDNDQIILVSDKG 860 + G ++A V+ +D ++L+S K Sbjct: 629 VLATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKA 688 Query: 861 TLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899 IR + +R RAT GV S + + ++S+ +R Sbjct: 689 QSIRFTATDESLRPMGRATSGVKGMSFREGDELLSMNVVRP 729 >gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] Length = 808 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 321/888 (36%), Positives = 491/888 (55%), Gaps = 91/888 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I S +I DE+ Y+ Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++G+ N + KC Sbjct: 3 EILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKC 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI GEV+GKYHPHG+A++YDAL R+AQ +S+R L+ GQGNFGS+D DPPAA RYTE + Sbjct: 63 ARIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAK 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +L DL K+TV N+D S EP VL ++ PN+L+NG GIAVGMAT+IP HN Sbjct: 123 LSELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+ +I+NP+ + L+ II+GPDFPTGA+I+ + YATG+G IV+RG Sbjct: 183 LQEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNELTEVYATGKGRIVLRGKV 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ +V+TEIPY V+KAA++E+IA + + I ++RDESD+ G R+V+E+ Sbjct: 243 HFEEGKR-FNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 + A+A++ILN LY++TSLQ+ FSV M+ ++G +P+ L +LKAF+ R +V+ +R + Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKRAE 361 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L RAH+L G+ A + VV I+R S + E A + L++ Sbjct: 362 YELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIE--------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + ++ Q +AIL++RL RLTGL + ++ E + L +I++ DILS Sbjct: 407 -----------ALSITNEQAKAILDMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRD 455 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ ++ QEL +K + RRT+I ED I ED+V+T++ GY+K Sbjct: 456 ERVYNVMYQELEELKKKYADERRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTS 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR+QRRGGKG G ++D + + H+ LF +S G Y K + + + Sbjct: 516 LKDYRSQRRGGKGIVGARTAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRD 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +GK + L+L + E + T++ F E +V TK G ++R L +F G Sbjct: 576 TKGKPIRAYLNLEEDESVLTMISFDEW-----KGDLVLVTKSGRIKRTPLKEFENTTSRG 630 Query: 673 KIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ D ++S ++ + I++ TK G +RFP+ +R GR+++GV GI L + Sbjct: 631 IRAITFSDSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQM-GRSAMGVIGIRLRE 689 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M V Sbjct: 690 KDEVVGMVNVPD------------------------------------------------ 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDN 850 + ILT++ +GFGKRT D+R+ +R G GI+ + + G L + V + Sbjct: 702 ----ENCEILTITVRGFGKRTPVNDYRVQSRGGVGIKTMPGVE--KAGQLCGIDIVADPK 755 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +I+++ G IR ++ + SR +GV I + D+ V + Sbjct: 756 SDVIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDLSGDDEVSHFAVVE 803 Score = 118 bits (295), Expect = 5e-24, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 8/214 (3%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADAD 747 E+ ++ T+ G + R R G+ G A+ D++++ +H+ Sbjct: 495 LIPNEDVVITLTEKGYLKSTSLKDYRS-QRRGGKGIVGARTAEDDEILTVCTSKMHSQTL 553 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + + ++G + ++ ++E + S + ++ V++ G Sbjct: 554 FVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTMISFDEWKGDLVLVTKSG 613 Query: 808 FGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 KRT +F ++R GIRA S + + + A +++DQII+ + G IR P Sbjct: 614 RIKRTPLKEFENTTSR---GIRAITFSDSDVV--VSATLSSSESDQIIIATKNGMAIRFP 668 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + ++R R+ GV+ + + VV + + + Sbjct: 669 LKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDE 702 >gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24] gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24] Length = 902 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 343/930 (36%), Positives = 485/930 (52%), Gaps = 104/930 (11%) Query: 1 MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47 M++ + + V + EMQ SYL YA+ VI+GRA+PD+RD Sbjct: 1 MSDETPEVPADSAGPVEPVLEGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60 Query: 48 GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107 GLKPVHRR+L+ M G ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R Sbjct: 61 GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120 Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167 L GQGNFGS D AA RYTE ++ A ++ D+ ++TVDF+ NYDG QEP +L Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180 Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGP 223 AR+PN+LVNG GIAVGMATNIP HNL EV DG + NP L+ L+ I+GP Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGP 240 Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283 DFPTGA ILG GI++AY TGRGSI +R V ++E+ R +VVTE+PYQ N + K Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSITMRAVVNVEELE-GRTCLVVTELPYQANPDNLAIK 299 Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342 IAELV++ +I IADLRDE S R G R+VI LKR A A V+LN LY++T LQ F+ NM+ Sbjct: 300 IAELVKDGKISGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFAANML 359 Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402 A+ P +L ++ +VA + +V+ RRT+Y L KA + AH+L L A+ LDEV+ Sbjct: 360 AIVDGVPRTLSLDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419 Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462 +IR S E AR LMQ + + E+Q RAIL+++L Sbjct: 420 LIRASNTTEAARDGLMQ--------------------------LLDIDELQARAILDMQL 453 Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 RL L R I++ L I E IL+S R II EL + + RRT+I+ Sbjct: 454 RRLAALERQKIQDRHAELEALIAEYNSILASEERQREIISTELSEIVAKHGDDRRTKILM 513 Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581 DM ED I E+MVVT++ GYVKR YR+Q+RGGKG G +R +D V F Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573 Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + +TH +LFF++LG VY+ K + L A+G+ + N+L+ E I ++ + + Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELVEAGRDAKGQHVANLLAFQPDEHIAQVLDLRDYQH 633 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 Y+V ATK G V++ +L+ D Sbjct: 634 ---APYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 S GV I+L GD+++S +V D Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTA 699 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 TS E ++ F+ V+E G+ KRT+ ++R+ Sbjct: 700 TDDALRPMGRATSGVT-GMKFREDDELLAADVVKDGSFVFIVTEGGYAKRTAVEEYRLQG 758 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G GI+ + E G LV V + D++++V + G ++R V + R T GV+ Sbjct: 759 RGGLGIKVGKYQE--ERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816 Query: 882 IFSTAKDERVVSVERIRESEIV-DEAESTE 910 K++R++ V R E + +EAE+ + Sbjct: 817 FAKPDKNDRIIEVARNSERGLEGEEAEAID 846 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 95/270 (35%), Gaps = 15/270 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 +V + G VK+ L Y R G + +RD D + +VS ++ Sbjct: 631 YQHAPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLMLV 688 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S +G + + P R + + + + + + + +V T Sbjct: 689 SRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVK------DGSFVFIVT 741 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708 + G +R + ++ ++ G + +K+ E ++ +E+++L+ + G+ VR Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRS 800 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ + GR+++GV K D++I +A + +E A ++GD Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEGEEAEAIDPENPAGSPAVAGD 859 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + E Sbjct: 860 DVTLAEGAGSHGGSAEADSAPAVESDESSD 889 >gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205] gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205] Length = 839 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 335/872 (38%), Positives = 495/872 (56%), Gaps = 55/872 (6%) Query: 1 MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 MT+ S+ E I V + EMQ SYL YA++VI+GRA+PD+RDGL Sbjct: 1 MTDTPESTPNEPDAPETGGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHR+IL+ M G ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR Sbjct: 61 KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++G GNFGS DP AA RYTEC+L A +L D+ +DTVD + NYDG +EP +L + Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225 R PN+LVNG GIAVGMAT IP HNL E+ +++P+ L+AL+ I++GPDF Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PT +I+G+ GI++AY TGRGSI +R V +E+ R +VV+E+PYQVN + E+IA Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300 Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 EL+RE ++ IAD+RDES R G R+V+ LKR A A V+LN LY++T LQ F NM+AL Sbjct: 301 ELIREGKLGGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P L ++++V + EV+ RRT + L KA +RAH+L GLA A+ LDEV+ +I Sbjct: 361 VDGVPRTLNLAQFIRSYVEHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R SP + AR+ L+ + + E+Q AIL+++L R Sbjct: 421 RRSPTVDDARQGLI--------------------------RLLDIDEIQATAILDMQLRR 454 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L R I ++L L +EI + DIL+ R I+ +EL + + RRT+I+ Sbjct: 455 LAALERQRILDDLVKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ++ ED I RED+VVT++ GY KR + YR+QRRGGKG SG +R +D V+ F+ S Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + LP S A+G+ + N+L+ E+I I+ + + Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQV--- 631 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 Y+V ATK+G V++ KL +F G IA+ L DE++ E D+LL +K Sbjct: 632 APYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761 +RF S +R GR + GV G+ ++ D++++M +V H D Y K + Sbjct: 692 AIRFNASDEALRPM-GRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIE 750 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + G + + G + + + + ++ G RT R + Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807 Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ G++ D+ I + ++ D+ Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837 >gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus DSM 14838] gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus DSM 14838] Length = 816 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 331/860 (38%), Positives = 515/860 (59%), Gaps = 86/860 (10%) Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 ILFGMM +G +K Y K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQG Sbjct: 8 ILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQG 67 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 N+GSVDGD AA RYTECRL+K ++ DL K+TVD + N+D S QEP V+ R PN+L Sbjct: 68 NYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMPTRIPNLL 127 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235 VNG GIAVGMATN+PTHNL EV+D C+A I+N DI+++ LM ++ PDFPTG I G + Sbjct: 128 VNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMS 187 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 G++ AY TGRG +++R + IE +S ++IV+TEIPY VNKA +++ IA+L +K+I Sbjct: 188 GVREAYLTGRGRVIMRARAEIETSST-HDKIVITEIPYGVNKAELIKNIADLANDKKIEG 246 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I++ DESDR+G R+VI++KR A+A V+LN+LY+ T LQ+ FSVN VAL +P L Sbjct: 247 ISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLK 306 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++K FV R EVV+RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A Sbjct: 307 DMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIV 366 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++R L+E+Q+RAI+E+RL +LTGL +D + Sbjct: 367 GLIER--------------------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHA 400 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + I +ILS+ +I EL+ VK + RR+ IV + ED Sbjct: 401 EYEEVMKMIAYYEEILSNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYAD 460 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ++M++T+SH+GY+KR PLS +RAQ RGG G G RD DF+ ++ + H +++FF+ Sbjct: 461 DEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQK 520 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G Y KV+ +P G+ ++G+A+ N+L+++ + + + D N+ YV+F TK Sbjct: 521 GKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTK 580 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G +++ L + + ++G A+ + D ++ V +N+I++ + G+ +RF SA+ Sbjct: 581 NGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAV 640 Query: 714 RVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 RV GR + GVRG++L + D+V+ M + +A Sbjct: 641 RVM-GRTATGVRGMTLDEDGQDEVVGMICIKDPEA------------------------- 674 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + I+ VSE+G+GKR+ D+R +NR GKG++ + Sbjct: 675 --------------------------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMN 708 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DER 890 ++ ++ G LV + V D++ +++++ G IR+ V ++RI RAT+GV + + K ++ Sbjct: 709 IT--DKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDE 766 Query: 891 VVSVERIRESEIVDEAESTE 910 + SV ++ + DE + Sbjct: 767 IGSVCKVTSESMEDEIPVDD 786 Score = 74.4 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 110/251 (43%), Gaps = 12/251 (4%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ + G +K+ L Y R+ G + + +R++D V ++ + + ++ + G Sbjct: 574 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 631 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + + A G + L + + + ++ + ++ ++ G Sbjct: 632 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 686 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R+ + D+ + NR GK ++ D+ +++++ T +ND+++ K G +R ++ +R Sbjct: 687 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVR 746 Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GVR I+L K D++ S+ V + + + + G+ E+ Sbjct: 747 IM-GRATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPTINEVEGEEEDYN 805 Query: 774 SLKNDSSVEGN 784 S ++ + Sbjct: 806 SDNKVNNEDEE 816 >gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense] gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense] Length = 819 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 333/892 (37%), Positives = 520/892 (58%), Gaps = 84/892 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + + I V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++ V Sbjct: 4 QNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELSVY 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N Y K ARI G+VMGKYHPHG+++IY+A+ RM+QD+S R L++G GNFGS+DG A Sbjct: 64 SNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHKAA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A L+ ++ K+T++F NYDGS +EP+VL PN+L+NG GIAVGM Sbjct: 124 AMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 AT IPTHNL EVVDG +A I + +I + LM+ I+GPDFPTG +LG G++NAY TG+G Sbjct: 184 ATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLGLKGLENAYKTGQG 243 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S++I+ +HI + + IVVTEIPYQ+ K+A++EKIA LV++K I I DLRDES RQ Sbjct: 244 SVIIKAKTHILEEK-GKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDESSRQ 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G ++VIELK+ A++ VILNQLY+++ L+ F +NMVAL KP+ +L IL+AF FR Sbjct: 303 GMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVALVDKKPQLVSLKTILEAFFNFRI 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ ++ + L KA+ R H++ + ++ +++I+ S + + A+++LM + Sbjct: 363 QVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQ------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +Q++AILE+ L RL+ + E L EI E Sbjct: 417 --------------------YQFDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAE 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMVVTVSHL 545 C I+ S+ + I+++ELL +K + RRT + + DED I ++++++T+++ Sbjct: 457 CQSIIESQPKKEKILEKELLEIKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNK 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+K YR Q+RGGKG +G+ + +EDF+ L STH +LFF++ G VY+ K ++ Sbjct: 517 GYIKVTDAEFYRQQKRGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQ 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + + ++G L+N+L+L GE +T+ + + Y+ FATK G V++ L ++ Sbjct: 577 INLSDKSSKGIPLVNLLNLKPGETLTSCASVKNFD--QPDNYLFFATKKGIVKKTSLKEY 634 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +GKIA+ L DE+L+V +I+L + G + F S R R S GV Sbjct: 635 SNIRENGKIAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTR-KTSRQSQGVI 693 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L KG+ +I A+ Sbjct: 694 GMDLKKGEFLIGAALFDPN----------------------------------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 K+Q IL ++EKG+GK TS +RI +R+GKG + ++ ++ G L+A+ Sbjct: 713 ---------SKDQSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKIN--SKTGRLIALK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVER 896 + +I+ SDKG +IRV +++I+ +AT+G I + V V Sbjct: 762 TAASSQDLIISSDKGQVIRVSISDIKNTKHKATQGTKIIKLKTGHKAVLVAV 813 Score = 83.3 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 22/244 (9%) Query: 676 MKLDSRDEILSV-----ETCTQEND-------ILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +K +DE +V ++ D I+ T G R R G Sbjct: 478 IKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNKGYIKVTDAEFYRQQK-RGGKG 536 Query: 724 VRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 G+ + + D + + + R+ +K S + +L N Sbjct: 537 AAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSSKGIPLVNLLNLK 596 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E S + + ++ ++KG K+TS ++ +GK A + Sbjct: 597 PGETLTSCASVKNFDQPDNYLFFATKKGIVKKTSLKEYSNIRENGK--IAIVLRD---DD 651 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ V N IIL S+ G I ++ R SR ++GV+ K E ++ Sbjct: 652 EVLTVANTNGRQNIILASNNGNAICFDESQTRKTSRQSQGVIGMDLKKGEFLIGAALFDP 711 Query: 900 SEIV 903 + Sbjct: 712 NSKD 715 >gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 816 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 345/900 (38%), Positives = 498/900 (55%), Gaps = 86/900 (9%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 + + + + + +EM+ S+L Y+++VI+ RA+PD RDGLKPVHRRIL+ M G Sbjct: 1 MPDEPTPDASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAG 60 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD- 123 ++ +VKCA++ G+VM ++HPHG+AAIYDAL RMAQD+SL LI+G GNFGS D Sbjct: 61 YRPDRPHVKCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPST 120 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL A LL + +DTVDF PNYD EP VL AR+PN+LVNG GIA Sbjct: 121 GPAASRYTECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIA 180 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMAT IP+HNLGEVVD +ID+P+ +D LM + GPDFPTG +ILGR GI++AY T Sbjct: 181 VGMATQIPSHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRT 240 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRGS+ +R V+ IE+ QIVVTEIP+Q + + +KI LV EK + I D+++ S Sbjct: 241 GRGSVKLRAVATIEEARSG-YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFS 299 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 R VIELKR A+ +V+LN LYR T LQ+ F + M+AL P L+G+ + +V Sbjct: 300 AGSETRFVIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVD 359 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + EV+ RR+++ L KAR+R H++ GL + LD V+ IR Sbjct: 360 HQREVIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRA----------------- 402 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ SE+Q IL++ L RLT LGR+++ E +L Sbjct: 403 --------SEDRAAARAALMAEPFGFSELQANHILDMTLGRLTRLGREELEEEAATLRAT 454 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E IL+ RL ++K E+L+ E RRTR D ED I E +VV +S Sbjct: 455 IAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLIS 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+K VP S ++AQ RGG+G G ++DED + + S + +L FSS G VY+ + Sbjct: 515 RSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRG 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP ARG AL+N++ L ERIT++M + + +VF T++G V+R ++ Sbjct: 575 YELPKLERSARGTALVNLVPLADDERITSVMGTKDFP---EDADLVFFTRNGMVKRTAMA 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + R G IA+ + DE++SV T+E+D ++ TK GQ +RFP++ +R GR + G Sbjct: 632 EYARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVR-RTGRATAG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VR I A GD +++ ++ Sbjct: 691 VRSIRRADGDWIVAGGLI------------------------------------------ 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L V+ +G+GKRT F + +R G GIR +++ G LVA Sbjct: 709 -----------EDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTER--KGELVA 755 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D++++VS +G +IRV + +I R GV + S +E V SV + ES Sbjct: 756 AAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPESGTD 815 >gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] Length = 932 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 349/895 (38%), Positives = 521/895 (58%), Gaps = 62/895 (6%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K AR G+ Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+ A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL K A Sbjct: 151 VIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNLGE +D Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R +E+ Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK+ A Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y L KA Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +RAH+L GL IA+ N+DE++ IIR S + A + +R Sbjct: 451 EERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER-------------------- 490 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L++ QT AILE+RL RLTGL I +EL L I +LS + I Sbjct: 491 ------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEI 544 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+ELL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ YR Q+ Sbjct: 545 IKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG A++N Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE I+ ++ + ++ Y++FAT+HG V++ + + + R G IA+ L Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ +V+ M I Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + + + + ++ ++ I Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + +SE+G RT RS +G+ + + + A+ +S +G Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885 Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910 + G V ++ + + E E V+EAE+ E Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928 >gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor Length = 939 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 346/924 (37%), Positives = 522/924 (56%), Gaps = 97/924 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + V + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + Sbjct: 79 KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R L++G GNFGS+D DPPAA RYTE Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198 Query: 133 CRLQKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 CRL F D+ VDF PN+D S +EP +L AR P++L+NG GIAVGMAT Sbjct: 199 CRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGE+VD +I+NP+ L L+E + GPDFPTG I+G GI AY TGRG + Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRV 317 Query: 249 VIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 V+RG + IE R I++ E+PYQ NK+ ++E+IAELV EK + I+D+RDESDR Sbjct: 318 VMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRS 377 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKRGA ++LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR Sbjct: 378 GMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRC 437 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N AR L++ Sbjct: 438 SVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------ 491 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+ Q A+L++ L +LT L R +E SL EI + Sbjct: 492 --------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISK 531 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 ++LS++ + +I QE +K++ TPRR+ I + +++D D I E+M++ +S Sbjct: 532 LNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEK 591 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + + Q RG G+S MR D +D + TH VL+FS G VY + ++ Sbjct: 592 GYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYK 651 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P + A G L+ +LSL+ GERIT+I+P E + Y+V T +G +++ L+ F Sbjct: 652 IPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKKVPLNAF 708 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I SG I+++L DE+ V C ++ + L ++ G + + +R GR + GV Sbjct: 709 SAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVL 767 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L +GD++ SM I+ + E ++ +S Sbjct: 768 AMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP------------------------- 802 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++L +++ G GKR FR N + G++ + +L AVF Sbjct: 803 ------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDC---SLAAVF 847 Query: 846 PV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V ++Q++LVS GT+ R+ V +I I SR+ +GV++ ++ S I Sbjct: 848 VVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLI 907 Query: 898 -----------RESEIVDEAESTE 910 + ++ EAE E Sbjct: 908 SAAEEEEEQDPESASLISEAEEPE 931 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 139/433 (32%), Gaps = 56/433 (12%) Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 ++A+ + + L ++N + ++I + +RS+ +DD Sbjct: 520 DEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSAST---EVDDL 576 Query: 438 SYTIGSDGTMYLSEV-------------QTRAILELRLARLTGLGR-------DDIRNEL 477 + + LSE Q R + + ++ + L Sbjct: 577 DIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVL 636 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 I L+ + D R T IV + Sbjct: 637 YFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG-------EDQ 689 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V ++ GY+K+VPL+ + A R G + + D + + V S G Sbjct: 690 YLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQNGM 747 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---------- 647 V +L + RG + + L +G+++ ++ P + Y Sbjct: 748 VIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPW 804 Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQENDIL 697 ++F +G +R L+ F NR G KL + +V + ++ Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 L ++ G R + I R++ GV + L ++ S +++ A+ + ++ Sbjct: 865 LVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASL 923 Query: 758 MSAQRRLISGDTE 770 +S D E Sbjct: 924 ISEAEEPEKQDPE 936 >gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440] gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440] Length = 839 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 334/872 (38%), Positives = 496/872 (56%), Gaps = 55/872 (6%) Query: 1 MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 MT+ S+ E I V + EMQ SYL YA++VI+GRA+PD+RDGL Sbjct: 1 MTDTPESTPNEPDVPETAGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHR+IL+ M G ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR Sbjct: 61 KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++G GNFGS DP AA RYTEC+L+ A +L D+ +DTVD + NYDG +EP +L + Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225 R PN+LVNG GIAVGMAT IP HNL E+ +++P+ L+AL+ I++GPDF Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PT +I+GR GI++AY TGRGSI +R V +E+ R +VV+E+PYQVN + E+IA Sbjct: 241 PTHGLIVGRAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300 Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 EL++E ++ IAD+RDES R G R+V+ LKR A A V+LN LY++T LQ F NM+AL Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P L ++ +VA + EV+ RRT + L KA +RAH+L GLA A+ LDEV+ +I Sbjct: 361 VDGVPRTLNLAQFIRYYVAHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R SP + AR+ L+ + + E+Q AIL+++L R Sbjct: 421 RRSPTVDDARQGLI--------------------------RLLEIDEIQATAILDMQLRR 454 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L R I ++L L +EI + DIL+ R I+ +EL + + RRT+I+ Sbjct: 455 LAALERQRILDDLAKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ++ ED I RED+VVT++ GY KR + YR+QRRGGKG SG +R +D V+ F+ S Sbjct: 515 GEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + LP S A+G+ + N+L+ E+I I+ + + Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQV--- 631 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 Y+V ATK+G V++ +L +F G IA+ L DE++ E D+LL +K Sbjct: 632 APYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761 +RF + +R GR + GV G+ ++ D++++M +V H D Y K + Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIE 750 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + G + + G + + + + ++ G RT R + Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807 Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ G++ D+ I + ++ D+ Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837 >gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] Length = 823 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 354/841 (42%), Positives = 506/841 (60%), Gaps = 42/841 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +ITDEM+++YL YA++VI+ RA+PD RDGLKPV RIL+GM MG+ N+ + KCA Sbjct: 6 VRPRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GE++GK HPHG++A+YDAL R+AQ W++R L+EGQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D +IDNPD ++ L I+ GPDFPT +ILG GI NAY+TGRG I IR +H Sbjct: 186 NEVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + IVVTE+PYQVNKA + E+IAEL R+++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F VNM+AL +P TL +L+ ++ R EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L+KAR RAH+L GL IA+ NLD V+ IR S + + AR LM Sbjct: 366 EFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLM--------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q AILE++L RL L R I E + I E DIL++ Sbjct: 411 -----------NGFALSEAQANAILEMQLGRLAALERQRIEEEYREVIQLIGELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +IKQ+L +K + PRRTRI+ ++ DED I +++T++ GYVKR Sbjct: 460 PRKILHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVRVLITLTDRGYVKRQS 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +YR QRRGG+G G +R++D V + ST +LFF+ G VY+ K LP S Sbjct: 520 PDIYRTQRRGGRGIRGATIREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N+++L GE++T+++ P+ E Y++ AT G ++R + ++ Q+ +G Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFE---KAEYLIMATVRGKIKRTSIKEYSQVRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ DE+ V D+LLTT GQ +RF +R GR + GV GI+LA+G Sbjct: 637 LIAIGLEDGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEG 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM + A + +R + + + ++ +E Sbjct: 696 DRVVSMDLARENAALLVVTA----NGYGKRTALEEYPVKGRATGGVITIRLRPGDEVAVA 751 Query: 793 LKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + E +LT ++E G RT + + R+ +G+ +++ + VA V + D Sbjct: 752 HVVHEHSLLTFITESGMVMRTEADGISMFGRNTQGVTIVNLAPNDR----VAALCVEEPD 807 Query: 852 Q 852 + Sbjct: 808 E 808 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 110/323 (34%), Gaps = 58/323 (17%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQE 693 +++ + ++ T G V+R + R G+ + +D + + + Sbjct: 494 VSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILAASTM 553 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY-- 748 +D+L T G+ + + A R + G V I+L G+QV S+ V + Sbjct: 554 DDLLFFTDRGKVYQIKAHEL-PDASRTAKGLPLVNLIALEPGEQVTSVLAVPDFEKAEYL 612 Query: 749 ----------------------------------------------DERICYMKHMSAQR 762 D + + + + Sbjct: 613 IMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWVAMTQGHEDVLLTTARGQTIRF 672 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 R + +L + +L V+ G+GKRT+ ++ + R Sbjct: 673 RQEEVRPMGRPATGVIGIALAEGDRVVSMDLARENAALLVVTANGYGKRTALEEYPVKGR 732 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 + G+ + + V+++ + +++ G ++R + I + R T+GV I Sbjct: 733 ATGGVITIRLRPG---DEVAVAHVVHEHSLLTFITESGMVMRTEADGISMFGRNTQGVTI 789 Query: 883 FSTAKDERVVSVERIRESEIVDE 905 + A ++RV ++ + E + +E Sbjct: 790 VNLAPNDRVAALC-VEEPDESEE 811 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ D K + ++ ++ + + + E ++L + Sbjct: 445 EVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVR 504 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++T++++G+ KR S +R R G+GIR + + + + ++A + D ++ +D Sbjct: 505 VLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILAASTM---DDLLFFTD 561 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 +G + ++ +E+ ASR KG V + + E+V SV + + E + Sbjct: 562 RGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQVTSVLAVPDFEKAE 610 >gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group] Length = 931 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 342/901 (37%), Positives = 515/901 (57%), Gaps = 86/901 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + V + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + Sbjct: 79 KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R L++G GNFGS+D DPPAA RYTE Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198 Query: 133 CRLQKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 CRL F D+ VDF PN+D S +EP +L AR P++L+NG GIAVGMAT Sbjct: 199 CRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGE+VD +I+NP+ L L+E + GPDFPTG I+G GI AY TGRG + Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRV 317 Query: 249 VIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 V+RG + IE R I++ E+PYQ NK+ ++E+IAELV EK + I+D+RDESDR Sbjct: 318 VMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRS 377 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKRGA ++LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR Sbjct: 378 GMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRC 437 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N AR L++ Sbjct: 438 SVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------ 491 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+ Q A+L++ L +LT L R +E SL EI + Sbjct: 492 --------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISK 531 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 ++LS++ + +I QE +K++ TPRR+ I + +++D D I E+M++ +S Sbjct: 532 LNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEK 591 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + + Q RG G+S MR D +D + TH VL+FS G VY + ++ Sbjct: 592 GYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYK 651 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P + A G L+ +LSL+ GERIT+I+P E + Y+V T +G +++ L+ F Sbjct: 652 IPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKKVPLNAF 708 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I SG I+++L DE+ V C ++ + L ++ G + + +R GR + GV Sbjct: 709 SAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVL 767 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L +GD++ SM I+ + E ++ +S Sbjct: 768 AMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP------------------------- 802 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++L +++ G GKR FR N + G++ + +L AVF Sbjct: 803 ------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDC---SLAAVF 847 Query: 846 PV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V ++Q++LVS GT+ R+ V +I I SR+ +GV++ ++ S I Sbjct: 848 VVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLI 907 Query: 898 R 898 Sbjct: 908 S 908 Score = 57.9 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 65/427 (15%), Positives = 137/427 (32%), Gaps = 56/427 (13%) Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 ++A+ + + L ++N + ++I + +RS+ +DD Sbjct: 520 DEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSAST---EVDDL 576 Query: 438 SYTIGSDGTMYLSEV-------------QTRAILELRLARLTGLGR-------DDIRNEL 477 + + LSE Q R + + ++ + L Sbjct: 577 DIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVL 636 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 I L+ + D R T IV + Sbjct: 637 YFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG-------EDQ 689 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V ++ GY+K+VPL+ + A R G + + D + + V S G Sbjct: 690 YLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQNGM 747 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---------- 647 V +L + RG + + L +G+++ ++ P + Y Sbjct: 748 VIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPW 804 Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQENDIL 697 ++F +G +R L+ F NR G KL + +V + ++ Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 L ++ G R + I R++ GV + L ++ S +++ A+ + ++ Sbjct: 865 LVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASL 923 Query: 758 MSAQRRL 764 +S Sbjct: 924 ISEAEEP 930 >gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653] Length = 870 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 335/861 (38%), Positives = 491/861 (57%), Gaps = 53/861 (6%) Query: 1 MTEHIISSDEEE-----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55 M + + +E I +V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR Sbjct: 1 MADENNPTTPDELAEGAAMRIEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60 Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115 +L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ G Sbjct: 61 VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNG 120 Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 NFGS DP AA RYTEC++ A +L D+ ++TVDF+ NYDG QEP VL AR+PN+L Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180 Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231 VNG GIAVGMATNIP HNL EV +G + NP+ + L+ + I+GPDFPTGA++ Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALV 240 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 +GR GI+ AY TGRGSI +R V +E+ R+ +VVTE+PYQVN + +KIA+LV++ Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKDA 299 Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 RI IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 +L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 +TAR LM+ + + E+Q AILE++L RL L R Sbjct: 420 DTARGGLME--------------------------LLEIDEIQANAILEMQLRRLAALER 453 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 I E + L +I E IL+S R II +EL ++ ++ RR+++V DM E Sbjct: 454 QKITQEHDELQAKINEYNAILASPERQRQIISEELTALVEKFGDDRRSKLVPFDGDMSIE 513 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I ED+VVT++ GY+KR YR+Q+RGGKG G ++ +D V F+ +TH +L Sbjct: 514 DLIAEEDIVVTITRGGYLKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 FF++ G VY+ K + LP +ARG+ + N+L+ E+I I+ + ++ Y+V Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIARILAIRDYDAV---PYLVL 630 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705 ATK G V++ L D+ G IA+ L DE++ E + ++D+LL +K Q Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQS 690 Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF + +R GR + GV+G+S + D+++SM +V + S Sbjct: 691 IRFTATDESLRPM-GRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRSNVDE 749 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + + + E IL ++ G RT + R + R Sbjct: 750 YRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE--ILAITLGGGVIRTRVSEVRETGRD 807 Query: 824 GKGIRATDVSKINEIGALVAV 844 G++ ++ K A+V + Sbjct: 808 TMGVQLINLGKR---DAVVGI 825 >gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168] Length = 853 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 326/900 (36%), Positives = 518/900 (57%), Gaps = 88/900 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 40 ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS + Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E Sbjct: 448 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I+ S +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 ++ L YR Q RGG G +D + L I +T + +L SS ++K + ++P G Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q +G ++N++ L + E I+ ++P ++N +++ + GN+++ LS F I Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670 Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++GKI +KL D ++S + +IL+ + G R+ I +R +GR ++GV+GI Sbjct: 671 KNGKIGLKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +G ++I Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 FI ++S+KGFGK+T ++R++ R+ KG+ + D + G LV + + Sbjct: 742 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +N + I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827] gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827] Length = 840 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 336/866 (38%), Positives = 490/866 (56%), Gaps = 46/866 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + + EMQNSY+ YA++VI+GRA+PD+RDGLKPVH R+L+ M Sbjct: 1 MSETTLPPIGGGSDRTEPRDLQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + Y KCAR+ G+VMG YHPHG++AIYDAL R+AQ W++R LI+GQGNFGS Sbjct: 61 FDSRFLPERSYNKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQ 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECRL A +L D+ +DTVDFR NYDG QEP VL +R PN+L+NG Sbjct: 121 GNDPAAAMRYTECRLTPLAMRMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII----RGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G V +DNP+ + +E + +GPDFPT ILG G Sbjct: 181 GIAVGMATNIPPHNLREVAEGVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +R V +++ + R +VV+E+PYQVN ++E IA LVR+++I I Sbjct: 241 IEDAYRTGRGSVKMRAVVEMDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGI 300 Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ DES+R+ G R+V+ +KR A A V+LN LY++T LQ F VNM++L P L Sbjct: 301 SNIADESNRRSGMRIVVTVKRDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + EV+VRRTK+ L KA +RAHV GL A+ LD V+ +IR S E+AR Sbjct: 361 QMIRHYVKHQIEVIVRRTKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARS 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + EVQ+ AILE++L RL L R I + Sbjct: 421 GLME--------------------------LLSVDEVQSNAILEMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + ++I + DIL+ R I++ ELL + D+ RRT+IV D+ ED I Sbjct: 455 QLAEIELQIADLKDILAKPERQRAIVRGELLEIVDKHGDDRRTKIVPFDGDVSMEDLIAV 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ E I ++ E Y+V AT++G Sbjct: 575 GRVYRTKAYDLPEASRNARGQHVANLLAFQPDEEIAQVIQIKNYE---AAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V+++KLSDF G I + L DE++ + +D+LL +K GQ +RF S + Sbjct: 632 LVKKSKLSDFDSNRSGGLIGINLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVL 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ D+++SM +V + + Sbjct: 692 RPM-GRATSGVQGMRFNSDDELLSMGVVQEG--LFVLVATDGGYAKRTPIEDYPVQGRGG 748 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + E + ++ G RTS+ + R + R KG+R ++ Sbjct: 749 KGVLTIQHDRRRGRLVGALIVDVEDELYAITSAGGVIRTSAKEIRKAGRQTKGVRLMNLG 808 Query: 834 KINEIGAL-------VAVFPVNDNDQ 852 + + + A+ V ++DQ Sbjct: 809 EKSTLIAVARNADEPADVSTGEEDDQ 834 >gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri] Length = 821 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 340/893 (38%), Positives = 531/893 (59%), Gaps = 87/893 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M + + + K++ Sbjct: 12 DGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHK 71 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R LI+G GNFGS+DGDPPAA RYTE Sbjct: 72 KSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTE 131 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A ++ D+ K+T F NYDGS +EP L +PN+LVNG GIAVGMATNIP Sbjct: 132 AKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPP 191 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG +AV NP+I LM+II+GPDFPTGA+I G+ AY TG G+I IR Sbjct: 192 HNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAGNGLIKAYETGNGAITIRS 251 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ + ++ +I+V+EIPYQ+NKA +LE+IAELVR+K I I DLRDES+ +G RVV+ Sbjct: 252 KIDIEE-NNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVL 310 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A +VILN+LY+ T LQ+ FS+N++AL +P L ILK F+ + +++++R Sbjct: 311 ELKRDAQENVILNKLYKLTPLQTNFSLNILALYKNQPRVMGLKQILKYFIEHQIDIIIKR 370 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +++ L K R+R +L GL IA+ N+DEV+ II+ S + A L+ + Sbjct: 371 SQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINK------------ 418 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L Q RAILE+RL RLTGL + I NE+ + + I E +I++ Sbjct: 419 --------------FNLVGEQARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIIN 464 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + + I+ EL +K + RR++I++ +++ E+ I RED ++ ++ GYVKRV Sbjct: 465 NSEKQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQDGYVKRV 524 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 ++ Q RGGKG G+ ++ + + ++ S+L FS+ G VYK + + + S Sbjct: 525 SDDTFKLQNRGGKGIIGLANIEDS-LKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSR 583 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG +IN++++++ E I TI+ E S+ +N + F TK G +++ K+S+F QI ++ Sbjct: 584 HARGLPIINLIAIDKTESIQTIIAVDESISTEDN--LFFVTKKGLIKKTKISEFNQIRQT 641 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GK+A++L DE++SV +D+++ +G+ +RF IR R SVGV+GI Sbjct: 642 GKVAIELKDNDELVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMT-RQSVGVKGI---- 696 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 E Sbjct: 697 -------------------------------------------------ANDATGETIGV 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +++L+V+E G+ K+T D+R++ R+ KG+++ +++ ++ G L V V+ ++ Sbjct: 708 SSGRSAKYVLSVTENGYAKKTIIKDYRLTGRNTKGVKSINLT--DKTGYLKFVQTVDGDE 765 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 I++ + KG +IRV + +I + R T GV I +D+++ +E +++ ++ Sbjct: 766 DILVGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEVIEILKKKINIE 818 Score = 76.0 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 72/170 (42%), Gaps = 7/170 (4%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I + + K + ++ ++ + ++ ++E +EL +E Sbjct: 451 DIKVAITELEEIINNSEKQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRRED 510 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++ +++ G+ KR S F++ NR GKGI N +L + N D +++ S+ Sbjct: 511 TLIMLTQDGYVKRVSDDTFKLQNRGGKGIIGL----ANIEDSLKKIISANSIDSLLIFSN 566 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905 G + ++ I SR +G+ I + K E + ++ + ES ++ Sbjct: 567 FGKVYKLRAYNIETYSRHARGLPIINLIAIDKTESIQTIIAVDESISTED 616 >gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] Length = 839 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 335/872 (38%), Positives = 497/872 (56%), Gaps = 55/872 (6%) Query: 1 MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 MTE S+ E E I V + EMQ SYL YA++VI+GRA+PD+RDGL Sbjct: 1 MTESPESTPNEPEVPEALAAVVSHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHR+IL+ M G ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR Sbjct: 61 KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++G GNFGS DP AA RYTEC+L A +L D+ +DTVD + NYDG +EP +L + Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225 R PN+L+NG GIAVGMAT IP HNL E+ +++P+ L+AL+EI++GPDF Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PT +I+G++GI++AY TGRGSI +R V +E+ R +VV+E+PYQVN + E+IA Sbjct: 241 PTHGLIVGQSGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300 Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 EL++E ++ IAD+RDES R G R+V+ LKR A A V+LN LY++T LQ F NM+AL Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P L ++ +V + EV+ RRT + L KA +RAH+L GL+ A+ LDEV+ +I Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R SP E AR+ L+ + + E+Q AIL+++L R Sbjct: 421 RRSPTVEDARQGLI--------------------------RLLEIDEIQATAILDMQLRR 454 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L R I ++L L +EI + DIL+ R I+ +EL + + RRT+I+ Sbjct: 455 LAALERQRILDDLAKLELEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIIPFD 514 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ++ ED I RED+VVT++ GY KR + +YR+QRRGGKG SG +R +D V+ F+ S Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + LP S A+G+ + N+L+ E+I I+ P + Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQV--- 631 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 Y+V ATK+G V++ +L +F G IA+ L DE++ +D+LL +K Q Sbjct: 632 APYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAALVGPTDDLLLVSKNAQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761 +RF + +R GR + GV G+ + D++++M +V D Y K + Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSDEDELLAMEVVREGLDVLVATNGGYAKRTPIE 750 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + G + + G + + + + ++ G RT R + Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807 Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ G++ D+ I + ++ D+ Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837 >gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] Length = 848 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 337/847 (39%), Positives = 514/847 (60%), Gaps = 39/847 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ + Sbjct: 2 EPNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K + KCARI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA Sbjct: 62 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL K + +L D+ KDTVDF PN+D + +EP+VL +RYPN+LVNG GIAVGMAT Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL E++ V +IDN + L+ +MEI++GPDFPTGA ILGR GI+ AY T Sbjct: 182 NIPPHNLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GR I +R V++IE + + +I+VTE+PY VNKA ++EKIA+LV+EK+I I + DES Sbjct: 242 GRAKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+ IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L+ ++ Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEYLK 361 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR + N A+ +LM+R Sbjct: 362 HQEEVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMER--- 418 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS+ Q++AI+++RL LTGL R+ + NE L + Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYRELQAK 455 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E IL+ +LL +I+ E++ + D+ RRT I DM ED I ED ++ ++ Sbjct: 456 IEELKAILADEKKLLTVIRDEIMIISDKYGDDRRTAIG-YDDDMSMEDLIPDEDTIIAMT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 HLGY+KR+ + +R+Q RGGKG G+ +ED++ DL + + H ++FF++ G VY+ K Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKA 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P ARG A+IN+L L E+IT I+P E ++ Y+ AT++G V++ + Sbjct: 575 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPMREF---NDDKYLFMATRNGMVKKTPMV 631 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + ++G A+ L DE++ V+ DILL T+ G C+RF + +RV GR S+G Sbjct: 632 EYEHVRKNGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRV-TGRVSMG 690 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ D+VI M + D+ M + + + + + + Sbjct: 691 VIGMRFEDDDEVIGMQMQSQGDSLLVVSENGMGKRTMITEFSAQNRGGKGVICYKCTDKT 750 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L + I+ ++ +G R + D + R+ G++ + + ++I + + Sbjct: 751 GYL--VGAKLVNDGREIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDI-KVAS 807 Query: 844 VFPVNDN 850 + V ++ Sbjct: 808 IAKVRES 814 >gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis] Length = 950 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 335/920 (36%), Positives = 503/920 (54%), Gaps = 64/920 (6%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 + I + E + SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G Sbjct: 70 TEEGGTGSDSRIIETELRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 129 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 ++ NK + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQD+S+R+ L++G GNFGS+D DP Sbjct: 130 LQHNKPFRKCARVVGEVLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDP 189 Query: 125 PAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRLQ A + L DL DTVDF PN+D S EP VL AR PN+L+NG GIA Sbjct: 190 PAAMRYTECRLQAVASAMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIA 249 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-----K 238 VG+AT IP HN+ EVV+G A+I NPDI + LM I PDFPTGA+ I + Sbjct: 250 VGIATKIPPHNMREVVEGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVR 309 Query: 239 NAYATGRGSIVIRGVSHIEKTS---GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 AY G+G I++R HIE S + +V+TE+PYQ NK+A++E+IA LV + Sbjct: 310 QAYEEGKGGILMRAKIHIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTG 369 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 ++D+RDESDR G RVV+E+KRG +AD++LNQL ++T++QS FS NMVAL G P TL Sbjct: 370 VSDIRDESDRDGVRVVVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLK 429 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 L+ F++FR EVV RR ++ L +A+ R H++ G A+ +LD VV IR + + A Sbjct: 430 NFLQHFLSFRCEVVERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAA-- 487 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + LS Q +L + L RLT L ++ Sbjct: 488 -----------------------LVVLRASPFGLSREQAEGVLGMTLRRLTSLEASKLQE 524 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIV 534 E L +I + D+L + R+L ++ E + + TPRRT I+ ED I Sbjct: 525 EQAQLQAKIADLQDLLQRQDRILQVVTSEAEELAAKFGTPRRTHIITDGEVELRHEDVIP 584 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +V S GY+KRV + AQ+RGG G++G ++++D + ++ V+ H +LFF++ Sbjct: 585 NAPSLVVYSRRGYIKRVRPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTT 644 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFAT 652 G Y + + +P G+ A G A+ +L ++ RI ++P ++ VV T Sbjct: 645 EGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLT 704 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G ++R L F INRSG +AM + D + V C+ + +L+ G F I+ Sbjct: 705 RKGQIKRTALKQFTSINRSGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITK 764 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR +VG + ++L+KG +++MAI+ + Sbjct: 765 LRRM-GRAAVGNKSMTLSKGTDIVAMAILP----------AGIVAEGPNDEDYLSIEGSH 813 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 ++ +E E + ++L V+++G GKRT +FR+ R+G GI+A + Sbjct: 814 DMDYSEGKAAETPAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRL 873 Query: 833 SKINEIGALVAV-------------FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 N L AV ++L + +G L+RVPV ++ I SR KG Sbjct: 874 ---NLGDRLAAVQDESSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKG 930 Query: 880 VVIFSTAKDERVVSVERIRE 899 + + + VV+ + + Sbjct: 931 HRLVKVRQGDEVVAATVLSK 950 Score = 76.8 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 22/227 (9%) Query: 696 ILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGISLAKGDQVISMAIVLHAD------ 745 +++ ++ G R +R R VG G L + D + + V D Sbjct: 589 LVVYSRRGYIKR-----VRPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFT 643 Query: 746 --ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 Y + + S T+ + K+ L EQ ++ + Sbjct: 644 TEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVML 703 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 + KG KRT+ F NR G+ A V + +L V + D +++ + G+ Sbjct: 704 TRKGQIKRTALKQFTSINR--SGLVAMGVREG---DSLQFVGLCSPTDSVLIAASNGSAQ 758 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++R RA G + +K +V++ + + + + Sbjct: 759 HFAITKLRRMGRAAVGNKSMTLSKGTDIVAMAILPAGIVAEGPNDED 805 >gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571] gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571] Length = 825 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 348/853 (40%), Positives = 513/853 (60%), Gaps = 40/853 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT +S E+ K + VSI +EM++SYL YA++VI+GRAIPD+RDGLKPVHRR L+ M Sbjct: 1 MTSEE-NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG +K + K ARI GEVMGKYHPHG+++IYD L +MAQ +S R +L+EGQGNFGS+ Sbjct: 60 GEMGNYHDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSI 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL + LL+D+ K+TVDF PN+D S QEP+VL A+ PN+LVNG Sbjct: 120 DGDSAAAMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSD 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT +P HN+GEV A+ID+P+I LME + GPDFPTG VILGR+GI +A Sbjct: 180 GIAVGMATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASA 239 Query: 241 YATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y TGRG I +RGV+ IE + +I+++EIPYQVNKA ++E+IA+LVR+K+I I+D+ Sbjct: 240 YTTGRGRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDI 299 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIELK+ V+LNQLY++T L+S F V +A+ +P+ TL I++ Sbjct: 300 RDESDKDGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQ 359 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R+ V+ RRT + L KA DR H+L GL +A+ N+D V+ IR S E A ++L++ Sbjct: 360 EFLKHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIE 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 L E+Q AIL+++L RL L + I +E + Sbjct: 420 --------------------------NFGLDEIQADAILKMQLRRLAALEQQKIIDERDG 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L E++ I+S + IK+E L + ++ RRT+I + D++ ED I + ++ Sbjct: 454 LLKEVERLKLIISDEGHIFAEIKKETLEISEKYSDERRTKISHDVSDLDKEDLIENKQVL 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V+++ Y+K +PL Y+ Q RGG+G G+ +DEDFV +F+ STH +L F+S G VY Sbjct: 514 VSLTSHNYIKSMPLDTYKGQHRGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVY 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KV+ +P + Q+RGKA++N+L L E++T ++P E + + + +FAT +G V + Sbjct: 574 WLKVYDIPEATRQSRGKAIVNLLELGDEEKVTAVIPVSEFK---EDEFFLFATLNGMVVK 630 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +F + +SG A+ L DE++ V +I+LTT++GQ +RF I +I R Sbjct: 631 IPQVEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIESI-SLRHR 689 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N++GV+GI L D++ + V Y K G Sbjct: 690 NALGVKGIKLRYMDELQDVTPVEKDHLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTD 749 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 G +S + + ++ I+ +S G RT + I R +G+R + + Sbjct: 750 VSGGIVSSKAVSD----DEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLDEG---D 802 Query: 840 ALVAVFPVNDNDQ 852 ++V F + D+D+ Sbjct: 803 SVVG-FTILDSDE 814 >gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5] gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5] Length = 839 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 336/872 (38%), Positives = 497/872 (56%), Gaps = 55/872 (6%) Query: 1 MTEHIISSDEE-----------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49 MT+ S+ E + I V + EMQ SYL YA++VI+GRA+PD+RDGL Sbjct: 1 MTDTPESTPNEPETPEPLAAVVQHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60 Query: 50 KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109 KPVHR+IL+ M G ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR Sbjct: 61 KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120 Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169 L++G GNFGS DP AA RYTEC+L A +L D+ +DTVD + NYDG +EP +L + Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180 Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225 R PN+L+NG GIAVGMAT IP HNL E+ +++P+ L+AL+EI++GPDF Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285 PT +I+G+ GI++AY TGRGSI +R V +E+ R +VV+E+PYQVN + E+IA Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300 Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 EL++E ++ IAD+RDES R G R+V+ LKR A A V+LN LY++T LQ F NM+AL Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P L ++ +V + EV+ RRT + L KA +RAH+L GL+ A+ LDEV+ +I Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R SP E AR+ L+ + + EVQ AIL+++L R Sbjct: 421 RRSPTVEDARQGLI--------------------------RLLDIDEVQATAILDMQLRR 454 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524 L L R I ++L L +EI + DIL+ R I+ +EL + + RRT+IV Sbjct: 455 LAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFD 514 Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584 ++ ED I RED+VVT++ GY KR + +YR+QRRGGKG SG +R +D V+ F+ S Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 TH +LFF++ G VY+ K + LP S A+G+ + N+L+ E+I I+ P + Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQV--- 631 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 Y+V ATK+G V++ +L +F G IA+ L DE++ E+D+LL +K Q Sbjct: 632 APYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQ 691 Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761 +RF + +R GR + GV G+ + D+++++ +V D Y K + Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSGEDELLAVEVVREGLDVLVATNGGYAKRTPIE 750 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + G + + G + + E + ++ G RT R + Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPEDELFAITSNGGVIRTPVKPVRRTR 807 Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ G++ D+ I + ++ D+ Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837 >gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160] gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160] Length = 822 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 332/854 (38%), Positives = 484/854 (56%), Gaps = 45/854 (5%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++ I V + EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M G Sbjct: 2 TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS DP AA Sbjct: 62 DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL A +L ++ ++TVDF+PNYDG QEP+VL R PN+L+NG GIAVGMA Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TN+P HNL EV D ++D+P+ + + ME ++GPDFPT +I+GR GI+ AY T Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIVGREGIEEAYRT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGS+ +R V +E+ + R Q+VVTE+PYQVN + E IAE VR+ R+ I+++ DE Sbjct: 242 GRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADES 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VI L+R A A V+LN LY++T LQ+ F NM+++ P L +++ +V Sbjct: 302 SDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDGVPRTLRLDELVRYYV 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + EV+ RRT+Y L KA +RAH+L GLA A+ LD V+ +IR Sbjct: 362 LHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRS---------------- 405 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + G + + E+Q AIL+++L RL L R I +EL L Sbjct: 406 ----------SASADAARSGLMDLLDIDEIQATAILDMQLRRLAALERQRILDELAELED 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL S R II+ EL + ++ RRT+ V D+ ED I E++VVT+ Sbjct: 456 RIADLQAILDSPERQRQIIRDELAEIVEKYGDDRRTKFVANDGDVSMEDLIAEEEVVVTI 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR +YR+QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 516 TRTGYAKRTKSDLYRSQRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAK 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + LP + ARG + NIL+ E+I +M + Y+V AT +G V++ +L Sbjct: 576 AYELPEANRTARGAHVANILAFQPDEKIAQVMQIKDYGV---APYLVLATANGQVKKTRL 632 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 +DF G IA+ L DE++ + D+LL T+ +RF +R GR Sbjct: 633 TDFDSPRSGGVIAINLRESDELVGAALIDPDQDLLLVTRKAMSIRFKADDATLRPM-GRA 691 Query: 721 SVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+L+ D ++SM +V D + K + G + + Sbjct: 692 TEGVRGIALSPDDSLLSMIVVEEGVDVLVATERGFAKRTGIENYPAQGRGGKGVLTADPK 751 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEI 838 S +GN+ L + + ++ G RT R +R+ G++ ++ + Sbjct: 752 SRKGNLVGALSVRLGDE---LYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPE---D 805 Query: 839 GALVAVFPVNDNDQ 852 ++VA+ DND+ Sbjct: 806 VSIVAIARTTDNDE 819 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 15/276 (5%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCT 691 + +++F T G V R K + + + DE ++ Sbjct: 550 VDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAHVANILAFQPDEKIAQVMQI 609 Query: 692 QEN----DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++ ++L T GQ + ++ F S GV I+L + D+++ A++ D D Sbjct: 610 KDYGVAPYLVLATANGQVKKTRLTD---FDSPRSGGVIAINLRESDELVGAALI-DPDQD 665 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + + + + + + +L +E+G Sbjct: 666 LLLVTRKAMSIRFKADDATLRPMGRATEGVRGIALSPDDSLLSMIVVEEGVDVLVATERG 725 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 F KRT ++ R GKG+ D + G LV V D++ ++ G +IR PV Sbjct: 726 FAKRTGIENYPAQGRGGKGVLTAD--PKSRKGNLVGALSVRLGDELYAITSGGGVIRTPV 783 Query: 868 NEIR-IASRATKGVVIFSTAKDERVVSVERIRESEI 902 N +R RAT GV + + +D +V++ R +++ Sbjct: 784 NGVRHNKDRATMGVKLMNLPEDVSIVAIARTTDNDE 819 >gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] Length = 983 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 340/919 (36%), Positives = 528/919 (57%), Gaps = 39/919 (4%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + I ++ + + +V + DE++ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 41 DGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYD 100 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + N + K AR+ G+V+G++HPHG+AA+Y+ + RMAQ +S+R LI GQGNFG++DG Sbjct: 101 LKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDG 160 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE R+ K A +L D+ K+TVD PNYDG+ Q P VL R+PN+LVNG GI Sbjct: 161 DGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGI 220 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGEV+DG VA++DNPD+ LD LM I GPDFPTG I+G GI+ AY Sbjct: 221 AVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIVGNAGIREAYR 280 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG ++R +HIE+ R+ I V EIPY VNK+A++++IAELVR+K+I I+++ D Sbjct: 281 TGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVNDL 340 Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 SD+ R+ I+LKR A + +LN L+ TSLQS F +NM+AL P + L IL F Sbjct: 341 SDKDNQVRIAIDLKRDAYEEAVLNNLFERTSLQSSFPINMIALVHNHPRQLPLKEILSEF 400 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR EVV RRT YLL + R +A + GL +A AN++++V +I S N + ARR LM+ Sbjct: 401 INFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLMEEP 460 Query: 422 WNASDIKDLIDLIDD----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 W+ + I LI+ ++ D YLSE Q RAIL L+L RLT L D Sbjct: 461 WDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHLAGD 520 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 +I+ + +L IK L+IL++ R+ +I+ EL+ VK+ RR+ E + D Sbjct: 521 EIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKLSKAD 580 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +D++VT+S GY+K +S Y AQ+RGGKGR ++D+DF++ + + +TH +++ Sbjct: 581 FIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHDTLMC 640 Query: 592 FSSLGFVYKEKVWRLPIG-SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 F+ G V+ KV+ LP + RG+ + NI + +GE+IT ++P E + N +++ Sbjct: 641 FTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFD---ENHFIIM 697 Query: 651 ATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 AT G +++ KLS F + A+ L D ++ E + ++D+ + + GQC+ Sbjct: 698 ATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQCI 757 Query: 707 RFPI----SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R + + D + + D + + + + Q Sbjct: 758 RICEFYNKKDV------------ADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQG 805 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821 SG + + +S + + ++ V+ G+GKR D + N Sbjct: 806 IRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVM-VTANGYGKRILLTDIPLRMN 864 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G++ N G LV V + N ++++D G + R PV+ + + R GV+ Sbjct: 865 RGSSGVKTMSHMDRN--GKLVGVVRSDINSDYLVITDLGHMTRTPVSNLPLPGRTAGGVI 922 Query: 882 IFSTAKDERVVSVERIRES 900 + + E +++++ I E+ Sbjct: 923 VMRPYEGESIIALQSIPEN 941 Score = 61.7 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 76/272 (27%), Gaps = 52/272 (19%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 ++ + ++ I+ ++ G IS R G + L D + MA+ Sbjct: 575 KLSKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQ-RGGKGRQAAKLKDDDFISRMAVTN 633 Query: 743 HADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 D R+ K I+ + Sbjct: 634 THDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDENH 693 Query: 799 FILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 FI+ + G+ K+ F+ + + + I+A + + +L+ + +D + + Sbjct: 694 FIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREG---DSLMGAEISSGDDDVFVF 750 Query: 857 SDKGTLIRV----------------------PVNE--------------------IRIAS 874 S G IR+ V E IR + Sbjct: 751 SSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRPSG 810 Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 R + + I + VS+ + E EA Sbjct: 811 RGSGALRIIKLRPGQTAVSLILLSVDETDPEA 842 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 19/254 (7%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D V S G R+ + E + SS Sbjct: 744 DDDVFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQ-----------SSE 792 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V P RG + I+ L G+ +++ DE+ V T +G Sbjct: 793 GEVKVVDRHAGQGIRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEA---VMVTANG 849 Query: 656 NVRRNKLSDFIQINRSGKIAMK----LDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 +R L+D G +K +D +++ V +D L+ T LG R P+S Sbjct: 850 YGKRILLTDIPLRMNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVS 909 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 + GR + GV + +G+ +I++ + +E +++ L + Sbjct: 910 NL-PLPGRTAGGVIVMRPYEGESIIALQSIPENVVASNEHTRNARNLDKNDELEIIEKLN 968 Query: 772 ITSLKNDSSVEGNI 785 K+ Sbjct: 969 GGKDKDAEETSKED 982 >gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira pseudonana CCMP1335] gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira pseudonana CCMP1335] Length = 820 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 328/895 (36%), Positives = 501/895 (55%), Gaps = 97/895 (10%) Query: 30 LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89 + YA+++ILGRA+PD RDG+KPVHRRIL+ M +G+ + Y KCAR+ GEV+GKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 90 NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGK 148 + A+YDAL R+AQ +S + LI+G GNFGS+D DP AA RYTECRL + A LLDD+ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120 Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208 DTV+F PN+DGS EP VL A+ P +L+NGG GIAVGMATN+P HNLGE++D CVA+ Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180 Query: 209 P-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----- 258 ++ L++II PDFPTGA I+G++G ++ Y TG G +V+R V H+E+ Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240 Query: 259 --TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 R I+VTE+PYQVNKAA+LE+IA LV EK++ IADLRDESDR G R+VIELKR Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374 A A V+ N L + TSLQ+ FS N +AL G P+RFTL L F+ FR + + + Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L+K +RAH++ GL IA+ + DEV+ I+R +P+ +AR LM Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNP----------- 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + LS Q A+L+L+L +LT L D + +E +L ++L++ Sbjct: 410 -----------KLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTND 458 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + + +E +++K TPR+T+I+ D D D + E V+ V+ GY+KR+PL Sbjct: 459 AAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLK 518 Query: 555 VYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + +Q RG GK + + D++ V F + H +VL + G Y + +++P G Sbjct: 519 TFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG + ++L + + IT+++P E N ++V AT++G +++ L+ F ++ + G Sbjct: 579 ARGAPIPSVLPVKSDDVITSVLPVSEFS---KNEFIVLATEYGWIKKTPLAAFEKLTQRG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 I L D + E CT +DIL+ + GQ RF + +R R S GV+ ++L KG Sbjct: 636 LIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRP-TARTSRGVKSMTLKKG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M ++ D Sbjct: 695 DTIADMNVLRKED----------------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +F+L V+ +G+GKR + +FR + R G G+ A + + VN++D+ Sbjct: 708 -----KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEIVDE 905 I+L++ +G ++R V++I RA GV++ + + +V + + + + Sbjct: 763 ILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGD 817 >gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] Length = 813 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 344/897 (38%), Positives = 508/897 (56%), Gaps = 91/897 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I T+E++ SYL Y+++VI+ RAIPD+RDGLKPV RRIL+ M ++G++ N + Sbjct: 2 DDKIFIKDFTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEVMGKYHPHG+AAIYDAL RM Q +++R L+E QGNFGS+DGDPPAA RYTE Sbjct: 62 KNARIVGEVMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ + ++L D+ K+TVDFR N+DGS EPVVL PN+L+NG GIAVGM TNIP Sbjct: 122 ARMPELGEYMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+V +I+ P+ ++ L++ I+GPDFPTG ++ G+K Y TGRG I IRG Sbjct: 182 HNLNELVAALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDGEGLKELYETGRGKITIRG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGY 308 IE IV EIPY V+KA ++E+I V +K+ V I D+RDESD++G Sbjct: 242 KYRIEDEGKG-TSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGI 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL++ A+ ++N L+++T+LQS F V M ++ KP L G+L++F+ R V Sbjct: 301 RLVIELRKNANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPSLMNLKGLLQSFLDHRVNV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KAR RAH++ GL AV +D VV IIR S NP+ A + L + Sbjct: 361 ITRRTKYELEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQE--------- 411 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 T+ +SE Q +AI ++RL L+ L ++ EL +L +I+ + Sbjct: 412 -----------------TIGVSEEQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAM 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-DCIVREDMVVTVSHLGY 547 DIL + RLLG+IK+EL V ++ RRT I+ D+ +E + I ED+V+ ++ GY Sbjct: 455 DILQKKERLLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVIVLTKWGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +K +P S Y+ Q RGGKG G+ + DED V ++ + + ++ FSS G Y+ + + Sbjct: 515 LKAIPSSEYKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIE 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +GK + N +SL++GE I +I+ D + ++ TK G V+R L +F Sbjct: 575 TTLKNTKGKHIANFISLDEGEEIKSIVAISLDGDYDKD--ILIFTKQGKVKRTSLREFSS 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 SG A+ L +D ++ V + D+L+ TKLG + F S +R GR ++GV Sbjct: 633 ARASGIRAINLVDKDVVVDVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTM-GRTAMGVNS 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+VI++ V Sbjct: 692 IKLREGDEVINVVKVDEGKK---------------------------------------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L ++E+G+GKR S + ++ NR G G++ V I+ IG +VA Sbjct: 712 -------------LLLITERGYGKRVSFHSYKPQNRGGIGVKT--VRDISRIGPIVATMS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V D I++ + KG IRV VN I + R T+GV+I +D+ VV ++ ++ Sbjct: 757 VEDGRDILIFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVVGAIEVQANDEE 813 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 62/166 (37%), Gaps = 6/166 (3%) Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 + D + + + + + + + E+ E ++ Sbjct: 448 KDIENAMDILQKKERLLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVI 507 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 +++ G+ K S ++++ R GKG++ +S +++ ++ ++ ++L S G Sbjct: 508 VLTKWGYLKAIPSSEYKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSK---LMLFSSAGK 564 Query: 862 LIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVD 904 ++ EI + TKG I S + E + S+ I D Sbjct: 565 AYQINAYEIETTLKNTKGKHIANFISLDEGEEIKSIVAISLDGDYD 610 >gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] Length = 697 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 351/694 (50%), Positives = 478/694 (68%), Gaps = 11/694 (1%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV++ Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L +GERIT I+ E + ++ AT G V++ L+ F Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 + +G IA+ L D ++ V+ EN+I+L Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLF 696 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 7/177 (3%) Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + ++++ +L A+ + + + R + + + + Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDID 528 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +EL +E ++T+S G+ K D+ R GKG AT + + I L N Sbjct: 529 MEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERL---LVANT 585 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +D I+ S +G R+ V ++ +ASR +G V I + ER+ ++ R+ E Sbjct: 586 HDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642 Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 61/213 (28%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+ LSD+ R GK A K+ D I + ++IL + G+ Sbjct: 539 VVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKT 598 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 R + + A R + G V + L +G+++ ++ V Sbjct: 599 YRLKVYQL-PLASRTARGKPIVNILPLEEGERITAILRVDE------------------- 638 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 +++FI + G K+T F +N Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTPLNQF--ANV 665 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 G+ A ++ + +L+ V N ++I+L Sbjct: 666 RSNGLIAVNLRE---DDSLIGVDITNGENEIML 695 >gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] Length = 845 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 331/898 (36%), Positives = 530/898 (59%), Gaps = 71/898 (7%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 K ++S+SI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++N Y Sbjct: 5 SKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPYK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ ++YDA+ R+AQ +S+R LI+GQGNFGS+DGD AA RYTE Sbjct: 65 KSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L+DL K+TVDF PNYDG+ + P V+ + PN+L+NG GIAVGM TNIP Sbjct: 125 IRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251 HN+ EV+D C+A I++ DI + L++ IRGPDFPT A+I + I +AY TG+G+I +R Sbjct: 185 HNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQVR 244 Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 ++ IE +R I++ EIPYQ+NK ++EKI ELV+E++I I ++RDESD+ G RV Sbjct: 245 ALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + A+ +LN LY T LQ+ ++NM+AL KP L I+ +F+ +R+E+V+ Sbjct: 305 VIELKRESEANFVLNSLYALTRLQTSININMIALLKGKPTLLNLKKIISSFIDYRKEIVI 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RT + LN+A+ R L + I++ N+D ++ +I+ + P+ AR L W + Sbjct: 365 KRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETLIE 424 Query: 431 IDLIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +D +E Q + IL+L+L +LT L ++ + E SL Sbjct: 425 LDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYISL 484 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI + IL + +RL+ IIK EL+ +K++ RRT+I+E ED I ++ ++V Sbjct: 485 TKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKKVIV 544 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 +S+ GY+K +S Y Q+RGGKG+S ++++DFV + + TH ++L S+ G ++ Sbjct: 545 ILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGRIFS 604 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP S + GK ++N LSL GE+IT+I + Y++ AT G +++ Sbjct: 605 IKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFK---KGNYILIATLMGLIKKI 661 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + + +SG I + L+ RDE++++++ + ++I+L T + +RF +++R GR Sbjct: 662 SMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVR-LTGRK 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S+GV G+ + K ++++SM IV Sbjct: 721 SMGVMGVKIQKDEKLVSMIIVEKDKD---------------------------------- 746 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILT++E G+G RT ++ +R +G+ + N G Sbjct: 747 -------------------ILTITENGYGNRTKESEYLKKSRFIRGVSVIKNDERN--GK 785 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +V V DQ+++ ++ G LIR+ V +I + R TKG+++ D+ V + R+ Sbjct: 786 IVGAIQVERKDQVVIFTNYGILIRILVKDISVFKRNTKGIILIRKINDQVVSGIYRVS 843 Score = 91.0 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 69/533 (12%), Positives = 170/533 (31%), Gaps = 24/533 (4%) Query: 385 HVLVGLAIAVANLDEVVR---IIRFSPNPETARRELMQRSWNAS-DIKDLIDLIDDSSYT 440 + A ++ + + + R ++ R + LI+ I + Sbjct: 225 EKKEQIVHAYRTGKGTIQVRALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKE 284 Query: 441 IGSDGTMYL---SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD--ILSSRS 495 DG + S+ ++ + L L I + + + Sbjct: 285 RKIDGIHEVRDESDKDGMRVVIELKRESEANFVLNSLYALTRLQTSININMIALLKGKPT 344 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L + +RT L+ + + E M++++ ++ ++ + Sbjct: 345 LLNLKKIISSFIDYRKEIVIKRTIFE---LNQAKKRVLSLEAMIISLKNIDFIISLIKGA 401 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDL--FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + + + E+ + +L F F + +++ +R Q Sbjct: 402 -STPKEARLRLTSFCWKLEETLIELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQT 460 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + L+ + E++ E + + + + + +N+L R + Sbjct: 461 ILDLKLQKLTNLEKEKVFEEYISLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKR 520 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 ++ + + ++ I++ + G ++F + R G L + D Sbjct: 521 RTKIIEDNSKFNQEDLIKKKKVIVILSNQGY-IKFQSISDYDIQKRGGKGKSSTRLKEKD 579 Query: 734 QVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 V S+ + + + + + + I+ Sbjct: 580 FVKSVLVTDTHENILCVSNFGRIFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFS 639 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + K +IL + G K+ S DF R GI ++ N+ ++A+ V Sbjct: 640 LKNFKKGNYILIATLMGLIKKISM-DFLTKAR-KSGIIIINL---NKRDEVIAMDSVKKR 694 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +IIL + IR N +R+ R + GV+ KDE++VS+ + + + + Sbjct: 695 SEIILFTSSAKAIRFSENSVRLTGRKSMGVMGVKIQKDEKLVSMIIVEKDKDI 747 >gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] Length = 824 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 339/850 (39%), Positives = 490/850 (57%), Gaps = 40/850 (4%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMG 64 ++S+E S++I DEM+N ++ YA++VI+GRAIPD+RDGLKPVHRRIL+ M G Sbjct: 1 MTSEENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEG 60 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 +K Y K A+ MG YHPHG++AIYD L +MAQ +S R L++GQGNFGS+DGD Sbjct: 61 NTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDS 120 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL KAA LL+D+ K+TVDF PN+D S QEP VL +R PN+LVNG GIAV Sbjct: 121 AAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAV 180 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATN+ HNLGEV D A IDNP++ L+ +M+I+ PDFPTG I+G GI NAY TG Sbjct: 181 GMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGTDGIVNAYQTG 240 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +G +V+RG++ IE+ EQIV+TEIPYQVNKAAM+EKIA+LV+ K I I+D+RDESD Sbjct: 241 QGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESD 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G RV+IELK+ A+V+LN LY++T L+S F + +A+ KP+ +L +L+ F+A Sbjct: 301 KDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKKPKILSLAELLRHFIAH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R +VV RR+ + L KA +R H+L GL A+ +D V+ IR SP A+ L+ + Sbjct: 361 RVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSK---- 416 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + SE Q AIL+++L RL L + I +E SL + I Sbjct: 417 ----------------------LGFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVI 454 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVS 543 + ILSS +L ++K E ++ RRT+I D D I E +V ++ Sbjct: 455 DKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMDLIPDEQTLVMLT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 Y+KRVPL +YR Q+RGG+G G+ +DED V +F+ +TH +L F++ G VY +V Sbjct: 515 TQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRV 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P GS ++GKA++N+L+L E ++ ++P + ++ N +++ATK G V + Sbjct: 575 YEIPEGSRTSKGKAIVNLLNLT-DEEVSAVIPMRDFDAEKN---LLYATKKGRVGKFSQD 630 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + G I + L DE++ V D++LTT GQ +RF +R GR + G Sbjct: 631 LFSRPRTGGIIGITLLDGDELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRA-TGRGTQG 689 Query: 724 VRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 V GI L +GD V ++ +V + K + G T Sbjct: 690 VIGIRLKFEGDYVCALTLVETQYLLMITDKGFGKRTEFEEFRGHG---RGTQGVKSIVAN 746 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + ++ + G RTS+ D I R KG+R V + + Sbjct: 747 FERGKVVSSLAVSDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRV---DSGDKVT 803 Query: 843 AVFPVNDNDQ 852 +V V ++ Sbjct: 804 SVAIVPPDED 813 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%) Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ S+ +V D +S + S + ++ + Sbjct: 445 DETTSLQLV--IDKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMD 502 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L EQ ++ ++ + + KR +R R G+G+ + + + F N +D Sbjct: 503 LIPDEQTLVMLTTQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKV---FLANTHDY 559 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 ++ ++KG + + V EI SR +KG V + + DE V +V +R+ + Sbjct: 560 LLCFTNKGRVYWLRVYEIPEGSRTSKGKAIVNLLNLT-DEEVSAVIPMRDFDAE 612 >gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] Length = 838 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 331/911 (36%), Positives = 521/911 (57%), Gaps = 75/911 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+E + V++++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MSESF----DHTPHNYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MGV +K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSV Sbjct: 57 NEMGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K A +L D+ KDTVDF+ NY +EPV L +R+PNVLVNG Sbjct: 117 DGDGAAAMRYTEARMSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAA 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE +D ++ NPD+ ++ LME + GPDFPTG +++G++GI+ A Sbjct: 177 GIAVGMATNIPPHNLGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVMGKSGIRKA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I++R IE+ + D+E+IVVTEIPY VNKA ++E+IAEL REK+I I + Sbjct: 237 YQTGKGKIIVRSRVEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVA 296 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES R+G R+V+E++R SA+V+LN LY+YT+LQ F NM+A++ P+ +L IL Sbjct: 297 DESGREGMRIVVEVRRDTSANVVLNNLYKYTALQVTFGFNMLAIDKGVPKIMSLKEILTK 356 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ ++ EV+ RRT++ KA DRAH+L GL A+ +DE++ IIR S + E A+ +L++R Sbjct: 357 YLEYQIEVIRRRTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIER 416 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S +Q +AIL++RLARLTGL R+ I E N L Sbjct: 417 --------------------------FEFSPIQAQAILDMRLARLTGLEREKIEAEYNDL 450 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ +ILSS + ++ II+ EL +K+ RRT + G L +++ ++ E+ V+ Sbjct: 451 MELIRRLTEILSSEANIMAIIEDELADIKNRFPGERRTELRVGELTSIEDEDLIEEEDVL 510 Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 ++ GY+KR+ ++ Q RGG+G G+ M D D + L STH S+LFF++ G VY Sbjct: 511 IALTSNGYIKRMTQDEFQVQNRGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVY 570 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + +P A+G ++N+L++ + E + I+ S + Y+ F TK+G V+R Sbjct: 571 QSKGYDIPEYGRTAKGIPVVNLLNIEKEEYVKEIIVL---HPSDEDQYLFFVTKNGIVKR 627 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 + +S + I +G IA+ + DE+++V + +I++ + G + F + R+ GR Sbjct: 628 SDVSAYANIRNNGLIALNMREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIM-GR 686 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG+ L +GD V+ A++ + S Sbjct: 687 TATGVRGMKLREGDYVVGAAVLNPESNVLVVTERGYGKQTPA--SEYAVKNRGGKGIKTS 744 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 ++ + ++ ++ ++++G R + +++R+ G++ + + Sbjct: 745 NISAKSGQLAGIVSTEGDEDLMVMTDQGVVIRFNIASISVTSRATLGVKMIRLDDGAK-- 802 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ I I T ++ + ++ + Sbjct: 803 ---------------------------VSSI---------TKIMKTGEETQELAETEVDT 826 Query: 900 SEIVDEAESTE 910 E D+++S E Sbjct: 827 EEAKDDSDSEE 837 Score = 64.8 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 89/240 (37%), Gaps = 17/240 (7%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + + V+ G VKR +S Y R G + R++D + ++ + + +++ S Sbjct: 612 EDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNM--REDDELINVLVTNGQQNIIIGSH 669 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ I A G + + + + P V+ T+ Sbjct: 670 NGYAMTFAETDARIMGRTATGVRGMKLREGDYVVGAAVLNPESN---------VLVVTER 720 Query: 655 GNVRRNKLSDFIQINR----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G ++ S++ NR + S ++ + + + D+++ T G +RF I Sbjct: 721 GYGKQTPASEYAVKNRGGKGIKTSNISAKSG-QLAGIVSTEGDEDLMVMTDQGVVIRFNI 779 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 ++I R ++GV+ I L G +V S+ ++ + E + + E Sbjct: 780 ASI-SVTSRATLGVKMIRLDDGAKVSSITKIMKTGEETQELAETEVDTEEAKDDSDSEEE 838 >gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] Length = 840 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 337/873 (38%), Positives = 493/873 (56%), Gaps = 56/873 (6%) Query: 1 MTEHIISSDEEEE------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48 MT+ S+ E E I V + EMQ SYL YA++VI+GRA+PD+RDG Sbjct: 1 MTDTPESTPSEPEVPETPAAAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDG 60 Query: 49 LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108 LKPVHR+IL+ M G ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR Sbjct: 61 LKPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRY 120 Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 L++G GNFGS DP AA RYTEC+L A +L D+ +DTVD + NYDG +EP +L Sbjct: 121 PLVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILP 180 Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPD 224 +R PN+L+NG GIAVGMAT IP HNL E+ ++NPD LDAL+EI++GPD Sbjct: 181 SRIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPD 240 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284 FPT +I+G I++AY TGRGSI +R V +E+ R +VV+E+PYQVN + E+I Sbjct: 241 FPTHGLIVGTQAIQDAYRTGRGSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERI 300 Query: 285 AELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343 AEL++E ++ IAD+RDES R G R+V+ LKR A A V+LN LY++T LQ F NM+A Sbjct: 301 AELIKEGKLGGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLA 360 Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 L P L ++ +V + EV+ RRT + L KA +RAH+L GL+ A+ LDEV+ + Sbjct: 361 LVDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIAL 420 Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463 IR SP E AR+ L+ + + E+Q AIL+++L Sbjct: 421 IRRSPTVEDARQGLI--------------------------RLLEIDEIQATAILDMQLR 454 Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523 RL L R I ++L L +EI + DIL+ R I+ +EL + + RRT+IV Sbjct: 455 RLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIVPF 514 Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583 ++ ED I RED+VVT++ GY KR + +YR+QRRGGKG SG +R +D V+ F+ Sbjct: 515 DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVC 574 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643 STH +LFF++ G VY+ K + LP S A+G+ + N+L+ E+I I+ P + Sbjct: 575 STHDWMLFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQADEQIAQIIEIPNYQV-- 632 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 Y+V ATK+G V++ +L +F G IA+ L DE++ +D+LL +K Sbjct: 633 -APYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVGAALVAPSDDLLLVSKNA 691 Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSA 760 Q +RF + +R GR + GV G+ + D +++M +V D Y K Sbjct: 692 QAIRFNATDEALRPM-GRATSGVIGMRFSDEDVLLAMEVVREGLDVLVATNGGYAKRTPI 750 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + G + + G + + + + ++ G RT R + Sbjct: 751 EEYPVQGRGGKGVLTAKITERRGGLV---GAVVIHPDDELFAITSNGGVIRTPVKPVRRT 807 Query: 821 N-RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R+ G++ D+ I + ++ D+ Sbjct: 808 RDRNTMGVKLMDLPDGVTI--VAIARNADEPDE 838 >gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] Length = 838 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 333/850 (39%), Positives = 486/850 (57%), Gaps = 40/850 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT E+ + V+I DEM++SY+ YA++VI+GRAIPD+RDGLKPVHRR L+ M Sbjct: 1 MTSE--PVVEKIIPKVIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR MGKYHPHG+A+IYD L +MAQ +S R+ L++GQGNFGS+ Sbjct: 59 WEEGNTSDKAYKKSARAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSI 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL + A LL DL K TVDF PN+D S +EP VL ++ PN+LVNG Sbjct: 119 DGDSAAAMRYTEARLTRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P HNL EV I NPD ++ LM+++ GPDFPTG +I G GI +A Sbjct: 179 GIAVGMATNMPPHNLREVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGTEGIVSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG G + +RGV+ IE +I+++EIPYQVNKA M+E IA LV+EK+I I+DLR Sbjct: 239 YHTGYGKLTVRGVAEIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV++LK+G V+LNQLY++T L+S F + +A++ +P+ L I+ Sbjct: 299 DESDRDGLRVVVDLKKGVIPTVVLNQLYKHTPLESTFGIINLAISDNQPKVLGLKAIISE 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R VV RR ++ L KA+DR H+L+GL +A+ +DEV+ IR S + E A++ L+ Sbjct: 359 FLHHRATVVRRRCEFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIA- 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 T L+E QT AIL+++L RL L + IR+E +SL Sbjct: 418 -------------------------TFGLTEPQTVAILQMQLRRLAALEQAKIRDERDSL 452 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E ILS + + I++E++ V + RRT I +E ED I + +++ Sbjct: 453 AHVIAELERILSCEANIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKPVLI 512 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 +++ Y+KR+PL YR QRRGG+G G+ +DED V D+F+ S H +L F++ G VY Sbjct: 513 SITTQNYIKRLPLETYRMQRRGGRGVIGMATKDEDSVEDIFVASMHDYLLCFTTDGRVYW 572 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P S ++GKA++N+L L IT ++P + Y++F+T+ G V + Sbjct: 573 LKVYNIPEASRTSKGKAIVNLLELQDEL-ITAVIPIRTFRH---DRYLLFSTEQGQVVKV 628 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 F + +G A+ L D ++ V+ +++L+T+ GQ +RF +R GRN Sbjct: 629 PQDQFSRPRSTGINAISLRENDSLVDVKLTDGTKELILSTRKGQSLRFHEQTVRTV-GRN 687 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRGI L GD V + +V + Y K G + Sbjct: 688 ASGVRGIKLKYGDLVQAATVVEKDHLLTITELGYGKRTEFDEFRGHGRGTMGVRNILTAP 747 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G ++ + + I+ +S G R D + RS +G+R + + Sbjct: 748 QNGVVATKAVS----SDDEIVVMSALGNVIRMKVSDISVQKRSARGVRIIRLDE---DDR 800 Query: 841 LVAVFPVNDN 850 +V + + Sbjct: 801 VVGLAVLQQE 810 Score = 77.5 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 5/161 (3%) Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + H A+ + + ++ + R D E + + + + ++L + Sbjct: 450 DSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKP 509 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +++++ + + KR +R+ R G+G+ ++ +F + +D ++ + Sbjct: 510 VLISITTQNYIKRLPLETYRMQRRGGRGVIGMATKD---EDSVEDIFVASMHDYLLCFTT 566 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERI 897 G + + V I ASR +KG I + + DE + +V I Sbjct: 567 DGRVYWLKVYNIPEASRTSKGKAIVNLLELQDELITAVIPI 607 >gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] Length = 833 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 337/831 (40%), Positives = 508/831 (61%), Gaps = 38/831 (4%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCARI G+ MGK Sbjct: 1 METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+++IY AL MAQ+W+ R L++G GNFGS DGD AA RYTE RL K + ++ Sbjct: 61 FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV+F PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL E ++ V Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180 Query: 205 VIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +IDN D ++ +MEII+GPDFPTGA ILGR I+ AY TGRG I R VS IE Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATILGRKDIEQAYRTGRGKIKTRAVSEIETM 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + +I+VTE+PY VNKA ++EKIA LV+EK++ I DLRDESD++G RVVIE++R A+ Sbjct: 241 DNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDAN 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 A+VILNQLY++T LQ F V M+AL +P+ L+ +L ++ +++VV RRTK+ LNK Sbjct: 301 ANVILNQLYKHTQLQDSFGVIMLALVDGEPKVLNLLQMLDEYLKHQKDVVTRRTKFELNK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +RAH++ GL IA+ N+DEV++IIR S A++ L++R Sbjct: 361 AEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIER------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LS+ Q++AI+++RL +LTGL R+D+ E L +I IL+ ++LL Sbjct: 402 -------FGLSDAQSQAIVDMRLRQLTGLAREDLEAEYADLMAKIDYLKSILADENKLLT 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +IK+E+ ++D+ RRT+I + D+ DED I ED VV +++LGY+KR+ + +++Q Sbjct: 455 VIKEEIEVIRDKFGDERRTKIGINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQ 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RGGKG G+ D+DF+ D+F+VSTH +LF ++ G +YK K + +P ARG A++ Sbjct: 515 NRGGKGIKGMQTIDKDFMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L L GE+I+ ++ E E + Y++ ATK G +++ + + I +SG A+ L Sbjct: 575 NLLQLQPGEKISAMVQMKEFE---EDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLR 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 DE++ V ++I+L TK GQ ++F + +R GR+++GVRGI L + D+VISM Sbjct: 632 EDDELIDVTISDNNDNIMLITKKGQGIKFRETDVRE-TGRSAMGVRGIELNQDDEVISMQ 690 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 + + M + + E + Sbjct: 691 LESQGECVLIVSANGMGKRT--PFTDFKLQNRGGKGVKCYKISDKTGEVVGAKAVNDGNE 748 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 I+ ++ +G R D I R G++ + ++I + ++ V ++ Sbjct: 749 IMMITNEGIVIRMFVDDISILGRVTLGVKLMNTGDKDDI-VVASITKVKES 798 >gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728] gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728] Length = 831 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 343/864 (39%), Positives = 496/864 (57%), Gaps = 47/864 (5%) Query: 1 MTEHIISSDEEEE---KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ E E I V + +MQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL Sbjct: 1 MSDPNQPELEVPEVGAGRIEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 +GM G ++ YVKC+R+ G+VMG+YHPHG++AIYD+L RMAQ WS+R LI+GQGNF Sbjct: 61 YGMYDGGYRPDRGYVKCSRVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS DP AA RYTE RL A +L D+ +D+VDF PNYDG EP VL AR PN+LVN Sbjct: 121 GSPGNDPAAAMRYTESRLDPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILG 233 G GIAVGMAT IP HNL EV +DN + L+AL+++++GPDFPT A+I+G Sbjct: 181 GSEGIAVGMATKIPPHNLREVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIVG 240 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R GI++AY TGRGSI +R V +E+ R +VVTE+PYQVN + E+IAELV++ ++ Sbjct: 241 RAGIEDAYRTGRGSIRMRAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKL 300 Query: 294 VDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+R+ES R G R+V+ LKR A A V+LN LY++T LQ F NM+AL P Sbjct: 301 NGIADIREESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTL 360 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 L ++ +VA + EV+VRRTK+ L KA +RAH+L GL A+ LD V+ +IR SP+ E Sbjct: 361 NLAQFVRHYVAHQIEVIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEE 420 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 ++ LM + + E+Q AIL+++L RL L R Sbjct: 421 SKTGLM--------------------------NLLEVDEIQATAILDMQLRRLAALERQK 454 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +EL + +I + DIL+ R IIK EL ++ + RRT+IV ++ ED Sbjct: 455 ILDELAEIEAKIADLEDILAKPERQRQIIKDELGAIVAKWGDERRTKIVPFEGEVNMEDL 514 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I RED+VVT++ GY KR + +YR+QRRGGKG SG ++ +D V+ F+ STH +LFF Sbjct: 515 IAREDVVVTITRGGYAKRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFF 574 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + LP S ARG+ + N+L+ E+I +M + Y+V AT Sbjct: 575 TNKGRVYRAKAYELPEASRTARGQHVANLLAFQPDEQIAQVMQISGYDV---APYLVLAT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G V++ KL+DF G I + L DE++ ++D+LL +K Q +RF S Sbjct: 632 RRGLVKKTKLTDFDSPRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASD 691 Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDT 769 +R GR + GV G+ + D++++M +V D Y K + G Sbjct: 692 ESLRPM-GRATSGVIGMRFVEADELLTMEVVRGGMDILVATSGGYAKRTPVEEYPQQGRG 750 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIR 828 + + GN+ + + ++ +G RT R + R+ G++ Sbjct: 751 GKGVLTAKITERRGNLVGALSV---TPDDELFAITSEGGVIRTPVKPVRRTTDRNTMGVK 807 Query: 829 ATDVSKINEIGALVAVFPVNDNDQ 852 D+ + + L ++ D+ Sbjct: 808 LMDLPEGVSL--LAMARSADEPDE 829 >gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] Length = 860 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 337/853 (39%), Positives = 508/853 (59%), Gaps = 38/853 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + K I + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 60 HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + A +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A ID+PDIDL LME I+GPDFPT +I+GR+GI+ A Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + IE+T R QI++TEIPY VNKA ++E +A+LV+EKRI I L Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE++R+G R+V+++++ A+A VILNQLY+YT LQ V M+A++ P+ TL +L+ Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419 +V F++EVV RRT+Y L KA++RAH+L GL A +DE++ IR A+ +M+ Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + Q AI++L+L RL GL I EL S Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ +R+L I+K ELL +K RRT I +++ ED I E V Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++ GY+KR + Y+AQRRGG+G SG+ ++ED V ++F+ STH VLF + G ++ Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + + GS ++G ++N+L L +GE++T ++ +D + YV TK G ++R Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDA-EQSGGYVTMVTKQGLIKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L + I +SG I + L+ D + + + +++ T+ GQ +RF R GR Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N GVR I LA+GD+V+ + I + ++ +R I K Sbjct: 692 NGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + + + ++ +L S++G R + + + +R G G+R + + ++ Sbjct: 748 NYDVSRDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 805 Query: 840 ALVAVFPVNDNDQ 852 V V D+D Sbjct: 806 --VMVLARTDHDD 816 Score = 77.9 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +++ S+ D++ + + A + + ++ + + ++ E Sbjct: 445 LKIEEELASL---HAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQSVTGEV 501 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +EQ + T++E G+ KR ++ R G+GI E + +F + Sbjct: 502 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 558 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D ++ V+D+G L R+ I SR +KG V + A+ E+V ++ Sbjct: 559 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNM 607 >gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS] gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS] Length = 820 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 319/899 (35%), Positives = 513/899 (57%), Gaps = 101/899 (11%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G +K Y Sbjct: 3 ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT Sbjct: 63 KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E +L+K + +L DL K+TVD + N+D S +EP+VL PN+L+NG GIAVGMATN+P Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ E ++ + IDN +I ++ LM+ I+ PDFPTG +I G G+K A+ TGRG I++R Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H EK R I++ EIPYQ+ KA + K ELV+E R+ + +RDESDR G R+V Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ + ++LN L++ T L++ FSVN +AL KP + L ++K FV R V++R Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY LNKA+ RAH++ G + + +L+ V+ +I+ S + E A+ +L+ + Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q ++ILEL+L LT L + I+ E L +I IL Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + IIK+EL +K++ RRT I L+ E + +V+T S+ GY+KR Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLE---PNKQVVLTTSYDGYMKRT 512 Query: 552 PLSVYRAQRR--GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 L+ Y+ + GG G +DF+ + + +TH +LFF+ G + +V+ +P Sbjct: 513 DLNEYKIKNIGVGGIVNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEV 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++G+A+ N++ +++ ++I + + + NN YV+ TK G +++ L + + Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 N++G A+K+ D ++ + +++IL+ K G+ +RF S +R R ++GV+ I Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMT-RITLGVKSI 691 Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +L+K D+VI M + Sbjct: 692 TLSKLLSKDKVIGMICINDP---------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 K+++IL +SE GF K ++ +R + +GI+ +++ ++ G LVA+ Sbjct: 712 -----------KKEYILVISENGFVKISNLSHYRKT---DQGIKTINIT--SKTGCLVAI 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898 V + D II+++ G IR+PV EI + RAT KG+ + + ++ SV ++ Sbjct: 756 KNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 812 >gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 335/853 (39%), Positives = 507/853 (59%), Gaps = 38/853 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + K I + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 5 MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 63 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 64 HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 123 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + A +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG Sbjct: 124 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 183 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A ID+PDIDL LME I+GPDFPT +I+GR+GI+ A Sbjct: 184 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIMGRSGIRAA 243 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + IE+T R QI++TEIPY VNKA ++E +A+LV+EKRI I L Sbjct: 244 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLN 303 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE++R+G R+V+++++ A+A VILNQLY+YT LQ V M+A++ P+ TL +L+ Sbjct: 304 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 363 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419 +V F++EVV RRT+Y L KA++RAH+L GL A +DE++ IR A+ +M+ Sbjct: 364 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 423 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + Q AI++L+L RL GL I EL S Sbjct: 424 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 457 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I+ IL+ +R+L I+K+ELL +K RRT I +++ ED I E V Sbjct: 458 LQAKIENWEAILADDARVLAIVKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 517 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++ GY+KR + Y+AQRRGG+G SG+ ++ED V ++F+ STH VLF + G ++ Sbjct: 518 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 577 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + + GS ++G ++N+L L +GE++T ++ E+ +V TK G ++R Sbjct: 578 RIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNMIC-QSKEADTEGGFVTMVTKQGLIKR 636 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L + I +SG I + L+ D + + + +++ T+ GQ +RF + R GR Sbjct: 637 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPM-GR 695 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVR I LA+GD+V+ + I + ++ +R I K Sbjct: 696 SGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 751 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + + ++ +L S++G R + + + +R G G+R + + ++ Sbjct: 752 NYDAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 809 Query: 840 ALVAVFPVNDNDQ 852 V V D+D Sbjct: 810 --VMVLARTDHDD 820 Score = 78.3 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +++ S+ + +++ + + A + + ++ + + ++ E Sbjct: 449 LKIEEELASLQAKIE---NWEAILADDARVLAIVKEELLEMKKRFGDERRTEIQSVTGEV 505 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +EQ + T++E G+ KR ++ R G+GI E + +F + Sbjct: 506 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 562 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSV 894 +D ++ V+D+G L R+ I SR +KG I + A+ E+V ++ Sbjct: 563 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNM 611 >gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3] Length = 860 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 336/853 (39%), Positives = 508/853 (59%), Gaps = 38/853 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + K I + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 60 HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + A +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A ID+P+IDL LME I+GPDFPT +I+GR+GI+ A Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + IE+T R QI++TEIPY VNKA ++E +A+LV+EKRI I L Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE++R+G R+V+++++ A+A VILNQLY+YT LQ V M+A++ P+ TL +L+ Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419 +V F++EVV RRT+Y L KA++RAH+L GL A +DE++ IR A+ +M+ Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + Q AI++L+L RL GL I EL S Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ IL+ +R+L I+K ELL +K RRT I +++ ED I E V Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++ GY+KR + Y+AQRRGG+G SG+ ++ED V ++F+ STH VLF + G ++ Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + + GS ++G ++N+L L +GE++T ++ +D + YV TK G ++R Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDA-EQSGGYVTMVTKQGLIKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L + I +SG I + L+ D + + + +++ T+ GQ +RF R GR Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 N GVR I LA+GD+V+ + I + ++ +R I K Sbjct: 692 NGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + + + ++ +L S++G R + + + +R G G+R + + ++ Sbjct: 748 NYDVSRDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 805 Query: 840 ALVAVFPVNDNDQ 852 V V D+D Sbjct: 806 --VMVLARTDHDD 816 Score = 78.3 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +++ S+ D++ + + A + D ++ + + ++ E Sbjct: 445 LKIEEELASL---HAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQSVTGEV 501 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +EQ + T++E G+ KR ++ R G+GI E + +F + Sbjct: 502 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 558 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D ++ V+D+G L R+ I SR +KG V + A+ E+V ++ Sbjct: 559 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNM 607 >gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] Length = 815 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 343/839 (40%), Positives = 511/839 (60%), Gaps = 36/839 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++GI + +T EM+ S++ YA++VI+ RA+PD +DGLKPV RRI+ GM ++G +K Y Sbjct: 2 EQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQ +S R +L++G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A ++ D+ KDTVDF PNYDG +EP VL +R PN+L+NG GIAVGMATNIP Sbjct: 122 ESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 +HNLGEVVD +AV NPDI + LM I GPDFPTGA ILGR IK AY TG G IV+ Sbjct: 182 SHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYILGRGAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE +++ I+VTE+PY VNKA ++EKIA V+EK I I +LRDESDR+G R+ Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ T+LQ+ F VN +AL +P+ +L ++ ++ +E+V+ Sbjct: 302 VIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGEPKTLSLKEMINVYLEHQEDVIR 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA DRAH+L GL A+ +D ++ +IR S E ++ LM Sbjct: 362 RRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLM------------ 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +SE Q +AI E++L RL GL R+ I NELN+L I + DI Sbjct: 410 --------------DEFDMSERQAKAIREMQLQRLAGLEREKIENELNTLLETIADLKDI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+++ R++ II QELL +K + RRT I++G D+EDED I ED+V+++++ GYVKR Sbjct: 456 LANKERIIAIIDQELLEIKAKYGDKRRTEIIQGSFDIEDEDLIPEEDVVISLTNNGYVKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+AQ RGGKG G+ ++D V L +STH +L F++ G VY+ K + +P Sbjct: 516 MPIDTYKAQNRGGKGIKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G +IN+L++++ E++ T++ + ++ F TK G V+R L +F I + Sbjct: 576 RQAKGLPIINLLNMDKDEQVKTMISITP-SEVDESHFLFFVTKDGLVKRTGLPEFENIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGK+A+ L DE++ V+ +++ILL G+ +RF + +R GR++ GV+G+++ Sbjct: 635 SGKLALTLREGDELVDVKLTNGKSEILLAAANGKAIRFDENDVRPM-GRSASGVKGMNV- 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +I + + + I + ++ ++ E Sbjct: 693 DDSHIIG--VTTNTEGQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + + ++ ++ +G R + + R+ +G+R V + GA V+ V D Sbjct: 751 IKAVEGNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGE----GASVSSITVVD 805 >gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6] Length = 859 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 335/853 (39%), Positives = 513/853 (60%), Gaps = 38/853 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + K I + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MEEDYVMIPGSGTKMIIR-DVKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G + + Y K A G V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSV Sbjct: 60 HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + A +L D+ KDT+++ PN+D + +EP VL R+PN+LVNG Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGCVA I++PDIDL LME I+GPDFPT +I+GR+GI+ A Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRG I +RG + IE+T R QI++TEIPY VNKA ++E +AELV++KRI I L Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLN 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DE++R+G R+V+++++ A+A VILNQLY+YT LQ V M+A++ P+ TL +++ Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419 +V F++EVV RRT+Y L KA++RAH+L GL A +DE++ IR A+ +M+ Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + + Q AI++L+L RL GL I EL+ Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELSG 453 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +I++ DIL++ +R+L I+K ELL +K RRT I +++ ED I E V Sbjct: 454 LQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 T++ GY+KR + Y+AQ+RGG+G SG+ ++ED V ++F+ STH VLF + G ++ Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + K + + GS ++G +IN+L L +GE++T ++ +P+DE +V TK G ++R Sbjct: 574 RIKGYTIAEGSRTSKGSNIINLLQLAEGEKVTNMLCYPKDE-DNKGGFVTMVTKQGLIKR 632 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L + I ++G I + L+ D + T + +++ T+ GQ +RF + R GR Sbjct: 633 TPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPM-GR 691 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVR I LA+GD+V+ + I + ++ +R I K Sbjct: 692 SGHGVRAIKLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + + + + ++ +L S++G R + + + +R G G+R + + ++ Sbjct: 748 NYDASKDKVAAVKIVDDIDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDK-- 805 Query: 840 ALVAVFPVNDNDQ 852 V V D+D Sbjct: 806 --VMVLARTDHDD 816 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 85/193 (44%), Gaps = 12/193 (6%) Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +++ GR + G+ + + + ++ + D+++ + + + D ++ Sbjct: 432 VKLQLGRLA-GLEILKIEEE-----LSGLQAKIEDWEDILANDARVLEIVKNELLDMKKR 485 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + ++ E ++L +EQ + T++E G+ KR ++ R G+GI Sbjct: 486 FGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMT- 544 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDE 889 E + +F + +D ++ V+DKG L R+ I SR +KG I + A+ E Sbjct: 545 --RKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIINLLQLAEGE 602 Query: 890 RVVSVERIRESEI 902 +V ++ + E Sbjct: 603 KVTNMLCYPKDED 615 >gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1] gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1] Length = 889 Score = 747 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 335/927 (36%), Positives = 479/927 (51%), Gaps = 103/927 (11%) Query: 1 MTEHIISSDEEEE------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48 M++ E + + V + EMQ SYL YA+ VI+GRA+PD+RDG Sbjct: 1 MSDETPEVPEPNDVEDVVLEGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDG 60 Query: 49 LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108 LKPVHRR+L+ M G ++ + KCAR+ G+VMG YHPHG+ AIYDAL R+ QDW++R Sbjct: 61 LKPVHRRVLYAMFDGGYRPDRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRY 120 Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 L GQGNFGS D AA RYTE ++ + A ++ D+ ++TVDF+ NYDG QEP +L Sbjct: 121 PLALGQGNFGSPGNDGAAAPRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILP 180 Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPD 224 AR+PN+LVNG GIAVGMATNIP HNL EV +G +DNP L+AL+ I+GPD Sbjct: 181 ARFPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPD 240 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284 FPTGA ILG GI++AY TGRGSI +R V ++E+ R +VVTE+PYQ N + KI Sbjct: 241 FPTGATILGHKGIEDAYRTGRGSITMRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIKI 299 Query: 285 AELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343 AELV++ +I IADLRDE S R G R+VI LKR A A V+LN LY++T LQ FS NM+A Sbjct: 300 AELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLA 359 Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 + P +L ++ +VA + +V+ RRT+Y L KA + AH+L L A+ LDEV+ + Sbjct: 360 IVDGVPRTLSLDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIAL 419 Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463 IR S E AR LM+ + + E+Q RAIL+++L Sbjct: 420 IRASNTTEAAREGLME--------------------------LLEIDELQARAILDMQLR 453 Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE- 522 RL L R I++ + L I+E IL+S R II +EL + + RRT I+ Sbjct: 454 RLAALERQKIQDRHSELEAMIQEYNAILASEERQRQIISEELAEIVAKHGDDRRTHILMG 513 Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582 DM ED I E+MVVT++ GYVKR YR+Q+RGGKG G +R +D V F+ Sbjct: 514 FDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFV 573 Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642 +TH +LFF++LG VY+ K + L A+G+ + +L + I + Sbjct: 574 TTTHHWLLFFTNLGRVYRAKAYELAEAGRDAKGQHVA---NLLAFQPDEHIAQVLDLRDY 630 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702 Y+V TK Sbjct: 631 QQAPYLVL------------------------------------------------ATKN 642 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 G + + R + GV I+L D+++S +V D Sbjct: 643 GLVKKTRLEDY--DTNRTA-GVIAINLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTAT 699 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 TS E ++ F+ V+E G+ KRT+ ++R+ R Sbjct: 700 DDALRPMGRATSGVT-GMKFREDDELLAADVVQDGSFVFIVTEGGYAKRTAVDEYRLQGR 758 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G GI+ +++ + G LV V + D++++V + G ++R V + R T GV+ Sbjct: 759 GGLGIKVAKLAE--DRGDLVGALIVQEEDEVLVVMEGGKVVRSAVTGVPAKGRDTMGVIF 816 Query: 883 FSTAKDERVVSVERIRESEIV-DEAES 908 K++R++ V R E + +E+E Sbjct: 817 AKPDKNDRIIEVARNSERGLEVEESED 843 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 15/271 (5%) Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + +V + G VK+ L Y R G + +RDED + +VS +L Sbjct: 630 YQQAPYLVLATKNGLVKKTRLEDYDTNRTAG--VIAINLRDEDELVSAQLVSETDDLLLV 687 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 S G + + P R + + + + + + + +V T Sbjct: 688 SRKGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVQ------DGSFVFIVT 740 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708 + G +R + ++ ++ G + +K+ E ++ +E+++L+ + G+ VR Sbjct: 741 EGGYAKRTAVDEY-RLQGRGGLGIKVAKLAEDRGDLVGALIVQEEDEVLVVMEGGKVVRS 799 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 ++ + GR+++GV K D++I +A + +E + Sbjct: 800 AVTGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEVEESEDGLDDDVTLAANDGAS 858 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQF 799 +T+ + + + E Sbjct: 859 EATVTAETENDADPEFETGAELNEDNTGGNE 889 >gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] Length = 823 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 334/905 (36%), Positives = 512/905 (56%), Gaps = 93/905 (10%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 +E E+ + + DE+ SYL+Y+++VI+GRAIPD+RDGLKPV RRI++ M Sbjct: 7 SEINNEIKSNEQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMY 66 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 ++G+ NK + K ARI GEVMGKYHPHG+++IY+AL RMAQ W +R L+EGQGNFGS+D Sbjct: 67 ELGLFHNKPFKKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSID 126 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 DPPAA RYTE RL K A +++D+ K TV N+DGS QEP VL A+ PN+L+NG G Sbjct: 127 RDPPAAMRYTEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASG 186 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIPTHNL +VVD +A I N DI ++ L++II+GPDFPTG +I+G++GI+ Y Sbjct: 187 IAVGMATNIPTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMY 246 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TG+G IRG + I K ++ I++TEIPY ++KA ++++IA+ ++E+ I + DLRD Sbjct: 247 ITGKGGFTIRGKAEI-KHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRD 304 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKA 360 ESD+ G RVVIE +VILN LY+ T+LQ+ F+ N + ++G K P L +++A Sbjct: 305 ESDKDGLRVVIEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEA 364 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V R EVV +RT+Y + RAH++ GL A +D VV IIR S + A +L+ Sbjct: 365 YVKHRFEVVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLV-- 422 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + +SE Q +A+L++RL RLT L +++ E L Sbjct: 423 ------------------------DILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRDL 458 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVRED 537 + +++ ++L + ++ +I +EL +K + PR+T I + + +D I +D Sbjct: 459 LVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKD 518 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V+T++ G++K + + +R QRR GKG G + ++D ++ + H+ LFF+SLG Sbjct: 519 IVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGK 578 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ + + + +GK + + L GER+ ++ + + F TK G V Sbjct: 579 VYEIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYVGE-----LFFVTKKGVV 633 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716 +R L DF I G A+ DE++SV ++ N +L++TKLG +RF I +R Sbjct: 634 KRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTM 693 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRGI L +GD+VIS ++ Sbjct: 694 -GRNAAGVRGIRLREGDEVISSTVL----------------------------------- 717 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +ILT++E G+GK T D+R +R G GI+ +I Sbjct: 718 -----------------ENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNI--GEIE 758 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + G +V V VN +++I+L + G I+ V++I SR +GV + + A + V Sbjct: 759 KTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVADFAV 818 Query: 897 IRESE 901 I E Sbjct: 819 IGGEE 823 >gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 731 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 327/808 (40%), Positives = 486/808 (60%), Gaps = 83/808 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M + + Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSY 815 + ++ VSE+G+GKR+ Sbjct: 714 ----------ESVMVVSEQGYGKRSEIE 731 Score = 88.3 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 22/228 (9%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMA 739 + I+ + +G R P++ R R VG +G D V +M Sbjct: 496 FYADDQMIITISHMGYIKRTPLTEFRA-QNRGGVGSKGTETRDADFVEHIYPATMHNTMM 554 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 Y ++ + + + + + + + E + Sbjct: 555 FFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSH-Y 613 Query: 800 ILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +L ++KG K+T + N G+ A + + +++ V N N++II+ + Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQN----GVNAITIRE---DDSVIEVRMTNGNNEIIIAN 666 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESEIV 903 G IR +R+ R GV + D + V+ + I++ E Sbjct: 667 RNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETE 714 Score = 82.1 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 86/211 (40%), Gaps = 18/211 (8%) Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYMK 756 G RF ++ I+ S + + L + DQ+ + ++ A + + + Sbjct: 406 GLIERFNLTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDE 459 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 + + + + S + + E ++ +Q I+T+S G+ KRT + Sbjct: 460 VCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTE 519 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 FR NR G G + ++ + + ++P ++ ++ + KG + V EI ++ Sbjct: 520 FRAQNRGGVGSKG---TETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKN 576 Query: 877 TKGVVIFST---AKDERVVSVERIRESEIVD 904 +KG I + D+ V + R++ + + Sbjct: 577 SKGRAIQNLLNIDSDDSVTAYLRVKSLDDTE 607 >gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] Length = 812 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 333/844 (39%), Positives = 500/844 (59%), Gaps = 40/844 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I S + +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ +K + Sbjct: 4 QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+Y++ RMAQD+S R LL++G GNFGSVDGD AA RYT Sbjct: 64 RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG GIAVGMATNIP Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +HNLGEVVDG A+IDNP+I +D LM ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ S + +IVVTEIPYQVNKA ++E IAEL ++K I I LRDESDR G R+V Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN L+++T L+ F M++L P +L ++ ++ +EEV+ R Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S A+ LM + Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+ AIL++RL RLTGL R+ I ++ + I D+L Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S R++++ ++K EL+ +K++ RRT+ + + D + E M +TV+ Y+KR+ Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R QR+GG+G SG+ M+D+D+V + STH +LFF+ G VY + V P+ S Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG ALIN + + D S+ Y++ T++G V++ + ++ IN++ Sbjct: 578 TARGSALINFIP-TLEKDERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKN 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISL 729 G IA++L+ D ++ V + D++L T+ G +RF I IR GR + GV GI L Sbjct: 637 GIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRAV-GRVAAGVHGIKL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + GD+V+ I D K + G + + Sbjct: 696 STGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVA-- 753 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPVN 848 ++ VSE G +TS+ ++G+G+ + + + + ++ V Sbjct: 754 ----ADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDR---IASIDVVP 806 Query: 849 DNDQ 852 + ++ Sbjct: 807 EENE 810 >gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens] Length = 813 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 342/876 (39%), Positives = 489/876 (55%), Gaps = 87/876 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ I + + E + SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 21 EDNRPQDVRIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLS 80 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 K + KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR L+ G GNFGS+DGDP A Sbjct: 81 SKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAA 140 Query: 127 AERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 A RYTECRLQ + + L DL DTVDF P +DGS EP VL AR PNVL+NG GIAVG Sbjct: 141 AMRYTECRLQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVG 200 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EVVD +A++ NP+ ++ LME + GPDFPTG ILG GI +AY G Sbjct: 201 MATNIPPHNLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGH 260 Query: 246 GSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 G + +RG + IE +R ++++E+PYQ NKAA++EKIA+LV K + ++D+RDES Sbjct: 261 GRLTVRGKASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDES 320 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G R+VIE+KRGA V+LN LY+YT+LQ+ FS NMV + G +P+ L L+ FV Sbjct: 321 DRFGMRIVIEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVE 380 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 FR V+ RR K+ L +A DR H++ G+ I ++NLD VV+IIR + + A L + Sbjct: 381 FRCSVIERRAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQK---- 436 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ Q A+L + L RLT L ++ E ++L E Sbjct: 437 ----------------------GFNVTPAQADALLAMPLRRLTSLESGKLKEEHDALTAE 474 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTV 542 I + +L S+ R+L II++E L +K E TPRRT + + ++ D D I E+ +VT+ Sbjct: 475 ITDLKQLLESKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTL 534 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S GY+KR+ + AQ RG G+SG MR D ++D F+ TH VLFFS G VY + Sbjct: 535 SEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIR 594 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +++P S + G L+ ++ + GERIT++ + + Y+V T G ++R L Sbjct: 595 AYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFA---EDQYLVMLTTGGYIKRTAL 651 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S F I +G +A++L DE+ V +E+ + L ++ G V +V GR + Sbjct: 652 SSFASIRSTGIVAIQLTPGDELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVL-GRATR 710 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR + L D++ +M IV Sbjct: 711 GVRAMRLRGDDKLTAMDIVPA--------------------------------------- 731 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 S R K ++L V+E GFGKR F G+ V Sbjct: 732 ---SLVRTGTKKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKVKTDG------ 782 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +Q+++ S+KG L R+ V ++ I SR K Sbjct: 783 -----ESEEQVVVGSNKGILNRLRVRDVSIQSRTAK 813 Score = 87.5 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 15/226 (6%) Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 EI ++ E I+ ++ G R R + G G + D + + Sbjct: 516 DGEINDIDVIANEETIVTLSEKGYIKRMAAGTF-TAQNRGTTGKSGGKMRSNDAMSDFFV 574 Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 D + I Y I+ + ++ Sbjct: 575 CRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAED 634 Query: 798 QFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 Q+++ ++ G+ KRT+ F R + GI A ++ L V + D + Sbjct: 635 QYLVMLTTGGYIKRTALSSFASIRST-----GIVAIQLTPG---DELKWVRNAAEEDTVA 686 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L S +G ++ + ++ ++ RAT+GV D+++ +++ + S Sbjct: 687 LASQRGMVVCIGCDDDKVLGRATRGVRAMRLRGDDKLTAMDIVPAS 732 Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 10/179 (5%) Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + ++ I + + + +E + + +G E Sbjct: 463 KLKEEHDALTAEITD----LKQLLESKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGE 518 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ E+ I+T+SEKG+ KR ++ F NR G + A+ F Sbjct: 519 INDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMR---SNDAMSDFFVC 575 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 +D ++ S++G + + +I SR + G V + ER+ SV+ + + Sbjct: 576 RTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAED 634 >gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] Length = 812 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 333/833 (39%), Positives = 496/833 (59%), Gaps = 37/833 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I S + +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ +K + Sbjct: 4 QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+Y++ RMAQD+S R LL++G GNFGSVDGD AA RYT Sbjct: 64 RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG GIAVGMATNIP Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +HNLGEVVDG A+IDNP+I +D LM ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ S + +IVVTEIPYQVNKA ++E IAEL ++K I I LRDESDR G R+V Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN L+++T L+ F M++L P +L ++ ++ +EEV+ R Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S A+ LM + Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+ AIL++RL RLTGL R+ I ++ + I D+L Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S R++++ ++K EL+ +K++ RRT+ + + D + E M +TV+ Y+KR+ Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R QR+GG+G SG+ M+D+D+V + STH +LFF+ G VY + V P+ S Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG ALIN + + D S+ Y++ T++G V++ + ++ IN++ Sbjct: 578 TARGSALINFIP-TLEKDERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKN 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISL 729 G IA++L+ D ++ V + D++L T+ G +RF I IR GR + GV GI L Sbjct: 637 GIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSV-GRVAAGVHGIKL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + GD+V+ I D K + G + + Sbjct: 696 SAGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVA-- 753 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGAL 841 ++ VSE G +TS+ ++G+G+ + + + I ++ Sbjct: 754 ----ADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASI 802 >gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100] Length = 836 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 322/851 (37%), Positives = 490/851 (57%), Gaps = 44/851 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ + + + + EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MSDDTTGGENLF-DRVEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ + MG YHPHG+ AIY L RMAQ W++R L++GQGNFGS Sbjct: 60 YDNGYRPERGYVKSAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSR 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECR+ A ++ ++ ++TVDF+PNYDG +EPV+L +R PN+L+NG G Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++DN L+A M+ ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDKG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +RGV+ IE+ G+R+ IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 240 IQDAYRTGRGSIRMRGVTSIEE-EGNRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DE SDR G R+V+ LKR A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 299 ARIDDESSDRVGLRIVVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +V + EV+VRRT+Y L++A RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 359 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIARE 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ + + E+Q AILE++L RL L R I + Sbjct: 419 GLI--------------------------DLLDIDEIQANAILEMQLRRLAALERQKIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 L + I + DIL+ R I++ EL + ++ RRT+IV D+ +ED I R Sbjct: 453 ALAEIEETIADLKDILARPERQRDIVRGELEEIVEKFGDERRTKIVAASGDVSEEDLIAR 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + YR+QRRGGKG G ++ +D V F+ STH ++LFF++ Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ + + LP S ARG+ + N+L GE+I ++ E + Y+V AT HG Sbjct: 573 GRVYRLRAFELPEASRTARGQHVANLLEFQPGEQIAQVIQIQSYE---DAPYLVLATSHG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713 V++++L+D+ G IA+ L+ D ++ + CT E+D+LL ++ GQ +RF + Sbjct: 630 RVKKSRLTDYDSPRSGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV+G+ + DQ++++ +V + + + + Sbjct: 690 RPM-GRATAGVKGMRFREDDQLLALTVVQEDAYLFVATSGGYGKRTKMEEYPAKGRGGLG 748 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + + ++ IL ++ G RT R ++R+ G+R D+ Sbjct: 749 VVTFKY--DKKRGKLIGALTVQEDDEILAITSAGGVIRTEVNQIRHTSRATMGVRLVDLG 806 Query: 834 KINEIGALVAV 844 + LVAV Sbjct: 807 ---KDVELVAV 814 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 107/316 (33%), Gaps = 58/316 (18%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693 E++ VV T G +R K+ + R G +L D + C+ Sbjct: 504 VSEEDLIARENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTH 563 Query: 694 NDILLTTKLGQCVRFPISAI---------------------------------------- 713 + IL T G+ R + Sbjct: 564 DTILFFTNFGRVYRLRAFELPEASRTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLV 623 Query: 714 ------RVFAGR-------NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 RV R S G+ I+L +GD+++ + A+ D + M Sbjct: 624 LATSHGRVKKSRLTDYDSPRSGGLIAINLNEGDRLVGAQ-LCTAEDDLLLVSEEGQAMRF 682 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 + + + ++ ++ + G+GKRT ++ Sbjct: 683 TADDEVLRPMGRATAGVKGMRFREDDQLLALTVVQEDAYLFVATSGGYGKRTKMEEYPAK 742 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R G G+ K + G L+ V ++D+I+ ++ G +IR VN+IR SRAT GV Sbjct: 743 GRGGLGVVTFKYDK--KRGKLIGALTVQEDDEILAITSAGGVIRTEVNQIRHTSRATMGV 800 Query: 881 VIFSTAKDERVVSVER 896 + KD +V+V+R Sbjct: 801 RLVDLGKDVELVAVDR 816 Score = 41.3 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 831 DVSKINEIGALVAVFPVNDNDQI------ILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 + A V++ D I + ++ G R V+ R R KGV Sbjct: 488 KFGDERRTKIVAASGDVSEEDLIARENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAE 547 Query: 885 TAKDERV 891 +D+ V Sbjct: 548 LKQDDVV 554 >gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] Length = 865 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 338/841 (40%), Positives = 508/841 (60%), Gaps = 38/841 (4%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ +K + KCARI Sbjct: 12 EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+ MGKYHPHG+++IY+AL ++AQ+W+ R L++G GNFGSVDGD AA RYTE RL K Sbjct: 72 VGDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG GIAVGMATNIP HNL E Sbjct: 132 ISMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191 Query: 198 VVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 + + +IDN + D+D LM+I++GPDFPTGA ILGR GI +AY TGRG I +R Sbjct: 192 TIYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 ++ IE + + +I+VTE+PY VNK+ +++ + +LV+ KRI I D+RDES R+G RVVI Sbjct: 252 ITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL++ +A+VILNQL+++T LQ F M+AL P+ L +L ++ +E+VV RR Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNLKDMLTYYLKHQEDVVTRR 371 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LNKA +RAH+L G IA+ N+DEV+ IIR S N A+ +L++R Sbjct: 372 TRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AI+++RL LTGL R+ I NE N L +I E +IL+ Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELKAKIAEYKEILA 465 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++LLG+IK EL ++ D+ RRT I D+ DE+ I RE++V++++ LGY+KR+P Sbjct: 466 DENKLLGVIKTELTAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 ++ Q RGGKG G+ + D D + ++F+ +TH ++FF+++G VY+ K + +P Sbjct: 526 KDTFKVQNRGGKGIKGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG A++N+L L E++T I+P + Y++ ATK+G V++ K+ F I ++G Sbjct: 586 ARGVAIVNLLQLLPNEKVTAIIPITGF----DKKYLMMATKNGIVKKTKIEAFENIRKTG 641 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L+ DE++ V+ + ENDI L T G C+RF +R GR S+GVRGI K Sbjct: 642 LAAITLNDGDELIEVKATSGENDIFLVTTKGMCIRFNEDCVRD-TGRTSMGVRGIRCDKN 700 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI+M + + D M + + + + Sbjct: 701 DEVIAMQLDVQGDEILFVTANGMGKRTEL--SEFAPQMRGGKGVKCYRITEKTGDIVSAK 758 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + I+ ++ +G R D + R G++ +V + ++ + + + Sbjct: 759 AVTNDHDIMMMTNEGIMIRMHCSDITVIGRITSGVKLMNVGSGAFVASVAKLARTEEEEN 818 Query: 853 I 853 + Sbjct: 819 V 819 >gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] Length = 970 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 334/914 (36%), Positives = 488/914 (53%), Gaps = 76/914 (8%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S + + VS+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G W Sbjct: 65 SGDSIANELLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVW 124 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + K AR+ GEV+GK+HPHG++A Y + RMAQD+S+R LI GQGNFGS+DGD AA Sbjct: 125 SSPTKKAARVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAA 184 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE +L K A +L DL +DTVDF PN+D S EPVVL R P +LVNG GIAVGMA Sbjct: 185 MRYTEVKLMKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMA 244 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E +D CV +++PD +D L+ +I PDFPTG ++ G +G+ Y TGRG Sbjct: 245 TNIPPHNLRETIDACVHALEHPDCSVDDLIALISAPDFPTGGIVYGLSGVYEGYRTGRGR 304 Query: 248 IVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +++R +H+E+ D +IVV EIPY VNK + E++ EL R+K++ I+++RDES R Sbjct: 305 VIMRARTHLEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTR 364 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 Q R+ I+LK+GA +V+LN L++ T +Q F +NMVAL +P L ++ F+ R Sbjct: 365 Q-IRIAIDLKQGAMPEVVLNNLFKNTQMQESFGMNMVALVDGQPMLLNLKQMVVYFLEHR 423 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EVV RRT + L K+R H+L G AIA+AN+DE +R+IR + E A++ LM R W Sbjct: 424 REVVTRRTIFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLG 483 Query: 426 DIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 ++ D + DG YL++VQ IL + L RLTGL R+ I Sbjct: 484 FAAEITRRAAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKIL 543 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR-TRIVEGLLDMEDEDCI 533 + + I + +DIL R+ IIK+ELL+ ++ RR T + + D I Sbjct: 544 ADYAATMERIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRDLI 603 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 R DMVV+++ G+VK L+ Y AQ RGGKGR+ +D + F+ +TH +L FS Sbjct: 604 PRRDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFS 663 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY V+ LP G +RG+ ++N+L L + E+I+ I+P E Sbjct: 664 TAGQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEF-------------- 709 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +++ + L T G R P+SA Sbjct: 710 -------------------------------------SEDRYMFLATDRGTVRRTPLSAF 732 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 G+R +L ++++ + I D + + Sbjct: 733 SSAR----RGIRATNLG-DEKLVGVTITSGDDD--VFLLADNGRCVHFKESTIRVMGRTA 785 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 V+ + S Q L +E GFGKRT+ + + NR GKG+ A V Sbjct: 786 HGVRGMRVKADESVVALASTNDMTQAFLIATEHGFGKRTALAAYPLRNRGGKGVIAIRVI 845 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N GA V+ V D I+L+S G ++R E+ R T G ++ D+ + + Sbjct: 846 EKN--GAPVSGVIVKPEDDIMLLSTGGKVVRTRAGEVPERGRNTVGNILIRM-PDDTLAA 902 Query: 894 VERIRESEIVDEAE 907 V R+ + DE+E Sbjct: 903 VRRVDRTGEEDESE 916 >gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50] Length = 704 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 347/701 (49%), Positives = 480/701 (68%), Gaps = 12/701 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++ Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ +GK+A+KL DE++ V+ + E++++L + G+ V Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 +L A+ + + R E K + + N ++ ++L +E + Sbjct: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T+S +G+ K ++ R GKG A + + + I L N +D I+ S +G Sbjct: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 597 Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902 + + V ++ A+R +G V + +DER+ ++ + E E Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE 642 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 9/178 (5%) Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746 TQE+ ++ + G P+S R G + + D + + + D Sbjct: 533 LITQEDVVVTLSHQGYVKYQPLSEYEA-QRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 Y + G + I+ + + + Sbjct: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 G K+T +F +GK A + + L+ V + D+++L S +G ++ Sbjct: 652 NGTVKKTVLTEFNRLRTAGK--VAIKLVEG---DELIGVDLTSGEDEVMLFSAEGKVV 704 Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 8/165 (4%) Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G V+ LS++ R GK A ++ D I + + IL + G+ Sbjct: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 + + A R + G V + L + +++ + I+ + + ++ + Sbjct: 600 YSMKVYQL-PEATRGARGRPIVNLLPLEQDERITA--ILPVTEFEEGVKVFMATANGTVK 656 Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + + + + + + E +L E ++ S +G Sbjct: 657 KTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEG 701 >gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51866] gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51866] Length = 861 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 313/832 (37%), Positives = 479/832 (57%), Gaps = 40/832 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SDE ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G Sbjct: 2 SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + +VK +R + MG++HPHG++AIYD L R+AQ WS+R +++GQGNFGS D PAA Sbjct: 62 ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTEC+L A ++ D+ +DTV+F+PNYDG EP VL +R PN+L+NG GIAVGMA Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL E+ + +++NPD L+A ME ++GPDFPT A+I+G GIK+AY T Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +RGV+ IE+ R IV+TE+PY VN ++ IA+ + ++ + + DE Sbjct: 242 GRGSIKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+ LKR A V+LN L+++++L+S F VNM+++ P L +L + Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRTK+ LN A RAH+L GL A+ LDEV+ +IR S E AR+ LM+ Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + E Q + IL+++L +L L R I +EL L Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEN 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R I++ EL + D+ RRT++V D+ DED I +E++VVT+ Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR + YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ + N+L GE I ++ E + Y+V AT+ G V++++L Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYE---DEPYLVLATRKGRVKKSRL 631 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 +D+ +G IA+ L+ D ++ + E+D+LL ++ GQ +RF + +R GR Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ D+++SM + D +A + + Sbjct: 691 TAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQ 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + E I+ ++ G RT R S+RS G+R ++ Sbjct: 751 PKRGKLIGALAVNEGDE--IMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNL 800 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 74/170 (43%), Gaps = 8/170 (4%) Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 +A + + AD + + + + + + + + + ++L +E Sbjct: 449 LAELENTIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQE 508 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856 ++T++ G+ KRT +R R GKG+R ++ ++ +V F V + +D I+ Sbjct: 509 NVVVTITSGGYAKRTKVDAYRSQKRGGKGVRGAEL----KMDDVVRHFFVCSTHDWILFF 564 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIV 903 ++ G + R+ EI ASR +G + + + E + V +I+ E Sbjct: 565 TNFGRVYRLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDE 614 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 16/265 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E +V + G VK+ L+ Y + R G + + + D + + S +L Sbjct: 609 QSYEDEPYLVLATRKGRVKKSRLTDYESSRSAG--LIAINLNEGDSLIGAVLSSGEDDLL 666 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R A + + + + + Y++ Sbjct: 667 LVSQRGQAMRFSAAD-DVLRPMGRATAGVKGMRFKDDDE------LLSMCVTSDGDYLLV 719 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT+ G +R + ++ R G L R +++ + ++I+ T G +R Sbjct: 720 ATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGALAVNEGDEIMAITSAGGVIR 779 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S IR + R+++GVR ++L G +S+ + D E Sbjct: 780 TEVSQIRP-SSRSTMGVRLVNLPNG---VSLYAIDRNVEDSGEEQAEAIARGEVDGPAEK 835 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + + + + +++ +E Sbjct: 836 NPVQAQAQLEVDGSDTDMNGVPTEE 860 >gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 852 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 338/844 (40%), Positives = 509/844 (60%), Gaps = 33/844 (3%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++ ++ +VS+ DEM+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Sbjct: 6 DDIDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDK 65 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD AA R Sbjct: 66 PHKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMR 125 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+DF+ NY +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 126 YTEARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATN 185 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D ++ NPD+ +D LME++ GPDFPTGA+++G++GI+ AY TGRG I+ Sbjct: 186 IPPHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVMGKSGIRRAYQTGRGKIL 245 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ + DRE+IVVTEIPY VNKA ++++IA+L R+KRI I DES R+G R Sbjct: 246 VRSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMR 305 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA V+LN LY+YT +Q F NM+A++ P+ L IL ++ + EV+ Sbjct: 306 IVIEVRRDTSASVVLNNLYKYTPMQVSFGFNMLAIDKGVPKILNLKEILSKYLDHQVEVI 365 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y KA +RAH+L GL IA+ ++DE++ IIR S + + A++ELM R Sbjct: 366 RRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNR--------- 416 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+VQ +AIL++RL RLTGL RD I E L I+ + Sbjct: 417 -----------------YELSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTE 459 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL S+ R+ II+ EL ++ RRT + + D+EDE I ED+++ +++ GY+ Sbjct: 460 ILGSQERIFQIIEDELNEIRTRFGDARRTELHIGEITDIEDESLIEEEDVLIALTNKGYI 519 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Q RGG+G G+ + D D + L STH ++LFF++ G VY+++ + +P Sbjct: 520 KRMTQDEFSVQNRGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPE 579 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN++ +++GE + ++ + ++ Y+ F TK G V+R S++ I Sbjct: 580 YGRTAKGLPIINLIKIDKGEEVKAMISISDQDTDHE-KYLFFVTKTGTVKRTLSSEYYNI 638 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L D +++V I++ T G + F S +R GR + GVRG+ Sbjct: 639 RNNGLIALNLKEDDSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAM-GRTATGVRGVR 697 Query: 729 LAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I V +D Y K ++ I N S G ++ Sbjct: 698 LRDDDYVVGADIMVEGSDVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAG 757 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E + IL ++ +G R S+R+ G+R + + + ++ + Sbjct: 758 LLVVE---GHEDILVMTNQGVAIRMKVEGISQSSRATLGVRMIRLDQEAVVSSITTILES 814 Query: 848 NDND 851 ++D Sbjct: 815 EEDD 818 >gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51867] gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51867] Length = 861 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 312/832 (37%), Positives = 479/832 (57%), Gaps = 40/832 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SDE ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G Sbjct: 2 SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + +VK +R + MG++HPHG++AIYD L R+AQ WS+R +++GQGNFGS D PAA Sbjct: 62 ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTEC+L A ++ D+ +DTV+F+PNYDG EP VL +R PN+L+NG GIAVGMA Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL E+ + +++NPD L+A ME ++GPDFPT A+I+G GIK+AY T Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGS+ +RGV+ IE+ R IV+TE+PY VN ++ IA+ + ++ + + DE Sbjct: 242 GRGSVKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+ LKR A V+LN L+++++L+S F VNM+++ P L +L + Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRTK+ LN A RAH+L GL A+ LDEV+ +IR S E AR+ LM+ Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + E Q + IL+++L +L L R I +EL L Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEE 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R I++ EL + D+ RRT++V D+ DED I +E++VVT+ Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR + YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ + N+L GE I ++ E + Y+V AT+ G V++++L Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYE---DEPYLVLATRKGRVKKSRL 631 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720 +D+ +G IA+ L+ D ++ + E+D+LL ++ GQ +RF + +R GR Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ D+++SM + D +A + + Sbjct: 691 TAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQ 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + E I+ ++ G RT R S+RS G+R ++ Sbjct: 751 PKRGKLIGALAVNEGDE--IMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNL 800 Score = 72.9 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 16/265 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E +V + G VK+ L+ Y + R G + + + D + + S +L Sbjct: 609 QSYEDEPYLVLATRKGRVKKSRLTDYESSRSAG--LIAINLNEGDSLIGAVLSSGEDDLL 666 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 S G + + P R A + + + + + Y++ Sbjct: 667 LVSQRGQAMRFSAAD-DVLRPMGRATAGVKGMRFKDDDE------LLSMCVTSDGDYLLV 719 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707 AT+ G +R + ++ R G L R +++ + ++I+ T G +R Sbjct: 720 ATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGALAVNEGDEIMAITSAGGVIR 779 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 +S IR + R+++GVR ++L G +S+ + D E Sbjct: 780 TEVSQIRP-SSRSTMGVRLVNLPNG---VSLYAIDRNVEDSGEEQAEAIARGEVDGPAEK 835 Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792 + + + + +++ +E Sbjct: 836 NPVQAQAQLEVDGSDTDMNGVPTEE 860 >gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN] gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN] Length = 816 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 317/899 (35%), Positives = 514/899 (57%), Gaps = 103/899 (11%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G +K Y Sbjct: 3 ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT Sbjct: 63 KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E +L+K + +L DL K+TVD + N+D S +EP+VL PN+L+NG GIAVGMATN+P Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+ E ++ + IDN +I ++ LM+ I+ PDFPTG +I G G+K A+ TGRG I++R Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H EK R I++ EIPYQ+ KA + K ELV+E R+ + +RDESDR G R+V Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ + ++LN L++ T L++ FSVN +AL KP + L ++K FV R V++R Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY LNKA+ RAH++ G + + +L+ V+ +I+ S + E A+ +L+ + Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q ++ILEL+L LT L + I+ E L +I IL Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + IIK+EL +K++ RRT I L+ E + +V+T S+ GY+KR Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLE---PNKQVVLTTSYDGYMKRT 512 Query: 552 PLSVYRAQRR--GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 L+ Y+ ++ GG G +DF+ + + +TH +LFF+ G + +V+ +P G Sbjct: 513 DLNEYKIKKIGVGGIVNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEG 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++G+A+ N++ +++ ++I + + + NN YV+ TK G +++ L + + Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 N++G A+K+ D ++ + +++IL+ K G+ +RF S +R R ++GV+ I Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMT-RITLGVKSI 691 Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +L+K D+VI M + Sbjct: 692 TLSKLLSKDKVIGMICINDP---------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 K+++IL +SE GF K ++ +R ++ ++ +++ ++ G LVA+ Sbjct: 712 -----------KKEYILVISENGFVKISNLSHYRKTD-----LKTINIT--SKTGCLVAI 753 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898 V + D II+++ G +R+PV EI + RAT KG+ + + ++ SV ++ Sbjct: 754 KNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 810 >gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo] gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo] Length = 810 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 302/888 (34%), Positives = 492/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ + A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVA----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V++H + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I + + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD + + V Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +SE G+GKR S R G + S + G++V V+ Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+LVS + +R ++ + +G+ + ++ ++SV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD++ V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIAIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + + I + + + + Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + V V +RE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ + Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873 VN +D + ++S++G L + E I Sbjct: 548 AIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSK 607 Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901 + + GV++ + V S E + + E Sbjct: 608 DFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661 >gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] Length = 810 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 300/888 (33%), Positives = 495/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+PNYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + D++ I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+D+AHVL GL IA+ N+DE+++II+ S + A+ L+ Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVA----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + +E N L IK+ +I Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I + + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDREEI---LTIKNSKDFTDDAYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD + + V Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +SE G+GKR S R G + S + G++V V+ Sbjct: 710 --------NPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +ND+I+LVS + +R ++ + +G+ + ++ ++SV + Sbjct: 761 ENDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807 Score = 88.7 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD+++ V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + I + + + + Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTDDAY 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICISK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + V V +RE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 99/290 (34%), Gaps = 78/290 (26%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730 + L++ DEI+ + ++ + K F +S I+ + V + L Sbjct: 386 IALNNIDEIIKIIKSSK---LAKDAKERLVANFGLSEIQ------ANSVLDMKLQKLTAL 436 Query: 731 -----KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + + + ++++ + + + + + + K E + Sbjct: 437 EIFKLEDEFNVLLSLIKDYENILLNPARIINIIREETINLGLKFGDERRTKIIYDEE--V 494 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ +V Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIAL 551 Query: 846 PVNDNDQIILVSDKGTLIRVPVNE----------------IRIASR-------------- 875 VN +D + ++S++G L + E I + R Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTD 611 Query: 876 ------------------------ATKGVVIFSTAKDERVVSVERIRESE 901 ++GV++ + V S E + + E Sbjct: 612 DAYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661 >gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] Length = 810 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 301/888 (33%), Positives = 492/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ + A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS++I Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVII 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVA----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V++H + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I + + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD + + V Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +SE G+GKR S R G + S + G++V V+ Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+LVS + +R ++ + +G+ + ++ ++SV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD++ V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIAIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + + I + + + + Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + V V +RE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ + Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873 VN +D + ++S++G L + E I Sbjct: 548 AIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSK 607 Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901 + + GV++ + V S E + + E Sbjct: 608 DFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661 >gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054] Length = 867 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 327/875 (37%), Positives = 490/875 (56%), Gaps = 60/875 (6%) Query: 1 MTEHIISSDEEEEK----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50 M + E+ + + + + EMQ SYL YA++VI+ RA+P++RDGLK Sbjct: 1 MVDDNRPDGGEQPEDSTTPAQAGNRVELIELETEMQRSYLDYAMSVIVSRALPEVRDGLK 60 Query: 51 PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110 PVHRR+L+ M G K Y KCAR+ G+VMG YHPHG+ +IYD L R+AQ WS+R+ L Sbjct: 61 PVHRRVLYAMYDGGYRPEKGYYKCARVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPL 120 Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 ++G GNFGS DP AA RYTEC++ A ++ D+ ++TVDF NYDG QEP VL +R Sbjct: 121 VDGNGNFGSPGNDPAAAMRYTECKMMPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSR 180 Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFP 226 PN+LVNG GIAVGMATNIP HNL EV G + +++P + L+ E I+GPDFP Sbjct: 181 IPNLLVNGATGIAVGMATNIPPHNLREVASGALWALEHPGASNEELLEALVERIKGPDFP 240 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286 TGA+I+GR GI++AY TGRGSI +R V +E+ R+ +V+TE+P+QVN + KIA+ Sbjct: 241 TGALIVGRRGIEDAYRTGRGSITMRAVVEVEEIQ-GRQCLVITELPFQVNPDNLALKIAD 299 Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 LV++ RI IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL Sbjct: 300 LVKDGRIAGIADVRDESSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 359 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 P +L ++ +VA + EV+VRRT + L KA +RAH+L L A+ +D V+ +IR Sbjct: 360 DGVPRTLSLDAFIRHWVAHQIEVIVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIR 419 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465 S + + AR LM + + E+Q AILE++L RL Sbjct: 420 ASESADAARTGLM--------------------------RLLDIDELQANAILEMQLRRL 453 Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525 L I +E + L +I E IL+S +R I+ +EL ++ ++ RR+ ++ Sbjct: 454 AALESARILSEHDELQAKINEYNAILASPARQREIVSEELTAIVEKYGDERRSTLIPSDG 513 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D+ ED I ED+VVT++ GYVKR +YR+Q+RGGKG G ++ +D V F+ +T Sbjct: 514 DLSIEDLIAEEDIVVTITRGGYVKRTRSDLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTT 573 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 H +LFF++ G VY+ K + LP ARG+ + N+L+ E IT +M E + Sbjct: 574 HNWILFFTNKGRVYRAKGYELPDAGRDARGQHVANLLAFQPEEHITQVMAVRTYE---DK 630 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTT 700 Y+V AT+ G V++ L D+ G IA+ L DE++ E + ++D+LL + Sbjct: 631 PYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGDELIGAELVSADDDLLLIS 690 Query: 701 KLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-ADYDERICYMKH 757 + Q +RF + +R + R + GV+G++ + D+++SM +V Y K Sbjct: 691 RKAQSIRFKATDEALRPMS-RATSGVKGMAFREDDELLSMNVVRPGTYVFTATDGGYAKR 749 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 S + G G++ E + I+ ++ G RT + Sbjct: 750 TSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESDE---IMAITLSGGVIRTRVSEV 806 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 R + R G++ ++ K A+V + + D+ Sbjct: 807 RETGRDTMGVQLINLGKR---DAVVGMARNAEADE 838 Score = 81.0 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 14/248 (5%) Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTS 588 + +V + G VK+ PL Y + R GG + +E +L Sbjct: 626 TYEDKPYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGDELIGAELVSADDD 685 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L S + K + P +R + + ++ + + + ++ YV Sbjct: 686 LLLISRKAQSIRFKATDEAL-RPMSRATSGVKGMAFREDDELLSMNVVR------PGTYV 738 Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQC 705 AT G +R + ++ R G A K+ ++ + ++I+ T G Sbjct: 739 FTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESDEIMAITLSGGV 798 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R +S +R GR+++GV+ I+L K D V+ MA AD + + SA Sbjct: 799 IRTRVSEVRE-TGRDTMGVQLINLGKRDAVVGMARNAEADEEEGADDTVDETESAAAATE 857 Query: 766 SGDTEEIT 773 T Sbjct: 858 QDATGTPD 865 >gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH] gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH] Length = 810 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 308/889 (34%), Positives = 491/889 (55%), Gaps = 87/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 4 EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 64 AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A L+ D+ K TVDFR NYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 124 YTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E+ D V ++D+ + + L+EI++GPDFPT A I+ + AY TG+GS+V Sbjct: 184 MAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYNESLIKAYTTGKGSVV 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 244 IRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIR 303 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ AF+ R+E+V Sbjct: 304 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISAFIEHRKEIV 363 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +AR++AH+L GL IA+ N+D V+ IIRF+ + A+ +++ Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKE--------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT + + + E L IK+ D Sbjct: 415 -----------------FNLSEIQANSILDMKLQKLTSIETEKLEEEFKILLALIKDYED 457 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547 IL+S R++ I+++E++++ + RRT+I+ D + RE+++V ++ G+ Sbjct: 458 ILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ Y+ Q GGKG ++D D V V+TH + S+ G +Y + + Sbjct: 518 IKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIK 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+ + +++L + E I + + Y++ T +G + R + F Sbjct: 578 DTSRTSKGQNVRELINLGETEEI---LAIKNCNELSVDNYLLITTANGKIARIETEGFKT 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I +KLD D + S E ++ I+ +K G F IR R + GV G+ Sbjct: 635 VKARGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIR-LTHRGTQGVSGM 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + +GD +I V Sbjct: 694 KVREGDVLIKALAVKQG------------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L VSE G+GKR R G S + G +V V Sbjct: 711 ----------SHLLVVSENGYGKRLEISKVTDLKRGATGYTCYKKSD-EKAGEVVDAITV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +D+I+LVS ++R V++I + +G+ + S + ++++SV + Sbjct: 760 VQDDEILLVSKGAKVLRTLVDKISEQGKDARGMQVLSLDE-DKLISVSK 807 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 73/227 (32%), Gaps = 58/227 (25%) Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + +++ I + D L +E + + + + Sbjct: 440 KLEEEFKILLALIKDYEDILNSPERVVNIVREEIINLSLKFGDER---RTKIIYDEEVLK 496 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN----------- 836 +L +E I+ ++++GF KR ++++ GKG+ + D+ + Sbjct: 497 TSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTH 556 Query: 837 ---------------------------------------EIGALVAVFPVND---NDQII 854 E ++A+ N+ ++ ++ Sbjct: 557 DFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGETEEILAIKNCNELSVDNYLL 616 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + + G + R+ + +GV++ ++ V S E + ++E Sbjct: 617 ITTANGKIARIETEGFKTVK--ARGVIVIKLDDNDFVTSAEIVSKNE 661 >gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8] gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8] Length = 829 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 313/852 (36%), Positives = 483/852 (56%), Gaps = 41/852 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT + + E +SI EM+ S++ YA++VI+ RAIPD+RDGLKPVHRR L+ M Sbjct: 1 MTSEVPPAGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MG +K K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R L++GQGNFGSV Sbjct: 61 WDMGNTSDKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL A LL+DL K+TV+F PNYD S +EP VL ++ PN+LVNG Sbjct: 121 DGDAAAASRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTD 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT +P HNL EV +D P + ++ L++I+ GPDFPTG +++G G+KN Sbjct: 181 GIAVGMATKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILMGVDGVKNI 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 YATG+G IV+RGV+ IE++ G ++I+VTE+PYQVNKA + IA++V++K++ I+D Sbjct: 241 YATGQGRIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDESD+ G RVV EL++G + VILN LYR+T+L+S FS +A+ P+ L +L Sbjct: 301 IRDESDKDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDGTPKLLNLPALL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FV R EV+ RR+++ L K ++R H+L GL A+A++D+++ IR S + AR Sbjct: 361 GNFVHHRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNAR---- 416 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 I L E+Q AIL+++L RL L + I +E + Sbjct: 417 ----------------------IALISGFGLDELQANAILQMQLRRLAALEQQKIVDEKS 454 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 +L EI + IL+S + I++E + + RRT I D+ ED I + + Sbjct: 455 TLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLSTEDLIEDKTV 514 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V+++ Y+KR+ L YR QRRGG G +G+ +++D V+ +F +L F+++G V Sbjct: 515 LVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRV 574 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+++P S A+GK ++N+L+L +TT++P E + Y++FAT+ G V Sbjct: 575 YWLKVYQIPESSRIAKGKPIVNLLNLKDEV-VTTVIPIREFR---KDRYLLFATQLGQVI 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +F +G A++L D+++ V T +++L+T+ G +RF +R G Sbjct: 631 KIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFGYGLRFHEDTVR-IVG 689 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV G+ L D ++++ +V + K G Sbjct: 690 RGASGVIGMRLRGNDTIVALTLVEKDHLLSITDAGFGKRTEFDDFRGHGRATMGV----- 744 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +++ I ++ G RTS RI+ R KG++ + + ++ Sbjct: 745 KNMQVERDVVIHSRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDK- 803 Query: 839 GALVAVFPVNDN 850 ++ V V Sbjct: 804 --VIGVAIVTPE 813 Score = 78.7 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 8/173 (4%) Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + +++ L A+ E I + + + + + Sbjct: 445 EQQKIVDEKSTLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLS 504 Query: 791 QELKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++++ +L ++ + KR +R R G GI + + + +VF Sbjct: 505 TEDLIEDKTVLVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDV---VSSVFAAGM 561 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 D ++ ++ G + + V +I +SR KG V + + KDE V +V IRE Sbjct: 562 KDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNLLNL-KDEVVTTVIPIRE 613 >gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly] gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly] Length = 815 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 308/889 (34%), Positives = 495/889 (55%), Gaps = 87/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A L+ D+ K TV+F+PNYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV D + ++++ D+ + L+ II+GPDFPT A I+ + AY TG+GS+V Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ S D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ F+ R+ ++ Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS + AR +M Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIM----------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT L I + + IK+ D Sbjct: 418 ---------------REFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547 IL S SR++ +I++E++++ + RRT+I+ D + RE+++V ++ G+ Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV Y+ Q GGKG ++D D V V+TH +L S+ G +Y + + Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S +RG+ + +++L + E I + + Y++ T +G + R + F Sbjct: 583 DSSRTSRGQNIRELINLGEKEEI---LAIKNCSELSVDNYLLITTANGKIARIETEGFKT 639 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I MKLD +D + S E ++++ I+ +K G F + IR R + GV G+ Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + +GD +I + Sbjct: 699 KVREGDMLIKALAIK--------------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L +SE G+GKR R G S + G +V V Sbjct: 714 --------QGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + +D+I+L+S ++R V++I + +G+ + S + +++V+V + Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 60/228 (26%) Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + + QV+ I D + + +I+ + + + + + Sbjct: 445 KIEEDFQVVLALI---KDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLK 501 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +E I+ ++++GF KR ++++ GKG+ + D+ + V Sbjct: 502 TSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQD---SDQVNVALCV 558 Query: 848 NDNDQIILVSDKGTLIRVPVNEI---RIASRA---------------------------- 876 N +D ++++S++G L + I SR Sbjct: 559 NTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDN 618 Query: 877 -----------------------TKGVVIFSTAKDERVVSVERIRESE 901 ++GV+I + V S E + + Sbjct: 619 YLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDD 666 >gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] Length = 810 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 301/888 (33%), Positives = 492/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR ++VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV+++I+ S + A+ L+ Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLVA----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I + + ++ ++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDACLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD + + + Sbjct: 695 LKEGDLFVKVLALRE--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +SE G+GKR S R G + S + G++V V+ Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+LVS + +R ++ + +GV + ++ ++SV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGVQVLFLD-NDNLISVSK 807 Score = 84.1 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD+++ V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + + I + + + Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDAC 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + V V +RE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLALREN 710 Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 102/291 (35%), Gaps = 80/291 (27%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---- 731 + L++ DE++ V ++ + K F +S I+ + V + L K Sbjct: 386 IALNNIDEVIKVIKLSK---LSKDAKERLVANFGLSEIQ------ANSVLDMKLQKLTAL 436 Query: 732 -----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGN 784 +++ ++L DY++ + + R + + + + + + Sbjct: 437 EIFKLEEEL---NVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEE 493 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ +V Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIA 550 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNE------------IRIA------------------- 873 VN +D + ++S++G L + E I Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFT 610 Query: 874 -----------SRATK------------GVVIFSTAKDERVVSVERIRESE 901 + + GV++ + V S E + + E Sbjct: 611 DDACLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661 >gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] Length = 815 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 326/845 (38%), Positives = 487/845 (57%), Gaps = 42/845 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I + + +M+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y Sbjct: 4 KEGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YD+ RMAQD+S+R L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K +L D+ KDTVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATN+P Sbjct: 124 EMRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G A+IDNP+I +D LM+ I+GPDFPT A+I G GI++ Y TGRGSI +R Sbjct: 184 PHNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE+ + +I+VTE+PYQVNKA ++E IA+L R+K I I LRDESDR G R+V Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN LY++T +Q F M+AL P L IL ++ +EEV+ R Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L KA +AH+L GL IA+ ++DEV+R IR S E A+ L+ + Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AIL++RL RLTGL RD I + + I D+L Sbjct: 413 ---------------FGLSEKQAVAILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SSR +++G++K EL K+ RRT I L DM+ D I + M +T++ Y+KR+ Sbjct: 458 SSREKIMGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITLTKQNYIKRI 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R Q++GG+G SG+ M+D D+V + STH +LFF++ G VY + + +P S Sbjct: 518 DSSDLRTQKKGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG A+IN ++ + G D S Y++ TK+G +++ L ++ IN++ Sbjct: 578 TARGSAMINFIT-SLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKN 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISL 729 G IAM+L D +++V +I++ T+ G +RF I +R + R++ GV G+ L Sbjct: 637 GLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLS-RSASGVHGMRL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + + E+ + + + + ++ E Sbjct: 696 KE-------GDDVVGVVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYEV 748 Query: 790 CQELKLKEQFILT-VSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPV 847 + ++ L +SE+G R + + G+G+ + + + + ++ V Sbjct: 749 VALVAADDRDELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDR---IASIDVV 805 Query: 848 NDNDQ 852 ++ ++ Sbjct: 806 SEPEE 810 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 14/240 (5%) Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+ + + + D ++ + I L TK R S + Sbjct: 464 MGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITL-TKQNYIKRIDSSDL 522 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTE 770 R + GV G+ + GD V + D ++ YMK Sbjct: 523 RTQK-KGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARG 581 Query: 771 EITSLKNDSSVEGNISEERCQELKLKE--QFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 S E +E +++L V++ G+ K+T+ ++ N + G+ Sbjct: 582 SAMINFITSLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEY--KNINKNGLI 639 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTA 886 A + + LVAV PV N++II+ + KG IR +++ +R SR+ GV Sbjct: 640 AMRLKDEDR---LVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRLK 696 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 94/237 (39%), Gaps = 13/237 (5%) Query: 518 TRIVEGLLDMEDEDCIVREDMV---VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574 T + E D + E+ + V+ GY+K+ L Y+ + G + ++DE Sbjct: 589 TSLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKNG--LIAMRLKDE 646 Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634 D + + V + ++ + G + + P +R + ++ + L +G+ + Sbjct: 647 DRLVAVLPVKGNEEIIMGTRKGMAIRFSIDD-DNVRPLSRSASGVHGMRLKEGDDVVG-- 703 Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694 + + GN +RN S + R+G+ + E++++ + Sbjct: 704 -----VVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYEVVALVAADDRD 758 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751 +++ ++ G +R P I + GV L +GD++ S+ +V + D + Sbjct: 759 ELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDRIASIDVVSEPEEDEENS 815 >gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1] gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1] Length = 815 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 308/889 (34%), Positives = 495/889 (55%), Gaps = 87/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A L+ D+ K TV+F+PNYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV D + ++++ D+ + L+ II+GPDFPT A I+ + AY TG+GS+V Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ S D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ F+ R+ ++ Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS + AR +M Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIM----------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT L I + + IK+ D Sbjct: 418 ---------------REFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547 IL S SR++ +I++E++++ + RRT+I+ D + RE+++V ++ G+ Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV Y+ Q GGKG ++D D V V+TH +L S+ G +Y + + Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S +RG+ + +++L + E I + + Y++ T +G + R + F Sbjct: 583 DSSRISRGQNIRELINLGEKEEI---LAIKNCSELSVDNYLLITTANGKIARIETEGFKT 639 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I MKLD +D + S E ++++ I+ +K G F + IR R + GV G+ Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + +GD +I + Sbjct: 699 KVREGDMLIKALAIK--------------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L +SE G+GKR R G S + G +V V Sbjct: 714 --------QGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + +D+I+L+S ++R V++I + +G+ + S + +++V+V + Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 60/228 (26%) Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + + QV+ I D + + +I+ + + + + + Sbjct: 445 KIEEDFQVVLALI---KDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLK 501 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +E I+ ++++GF KR ++++ GKG+ + D+ + V Sbjct: 502 TSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQD---SDQVNVALCV 558 Query: 848 NDNDQIILVSDKGTLIRVPVNEI---RIASRA---------------------------- 876 N +D ++++S++G L + I SR Sbjct: 559 NTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELINLGEKEEILAIKNCSELSVDN 618 Query: 877 -----------------------TKGVVIFSTAKDERVVSVERIRESE 901 ++GV+I + V S E + + Sbjct: 619 YLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDD 666 >gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum] Length = 793 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 306/883 (34%), Positives = 482/883 (54%), Gaps = 92/883 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++ E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV +K Y KCAR Sbjct: 2 EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 61 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I GE MGKYHPHG+ AIYDAL RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL Sbjct: 62 IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 121 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A ++DD+ ++TV FR N+DG+ EP L ++ PN+L+NG GIAVGMATN+ HNL Sbjct: 122 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 181 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ D + +D+ D +D L++ ++GPDFP G ++ + AY TGRG ++++G Sbjct: 182 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQGEVDA 241 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + ++++ IPY VNKA +++ IA+L + + I DI D++DESDR G +VI+++ Sbjct: 242 TEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRD 297 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 ++LNQLY +T+L+S + + L G +P+ L ++ +F+ R +V++RR+++ Sbjct: 298 DDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 357 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L + ++R VL G+ AV ++D VV I++ S + + A Sbjct: 358 LERKKERLDVLTGILTAVEHIDRVVEILKSSKDADEA----------------------- 394 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 + L++ Q +AILE+RL RL + +R+E+ L EIK+ +I+ S R Sbjct: 395 ---SSKLRNEFDLNDRQIKAILEMRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDR 451 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + K+E+ ++ + RR+RI + + ED I E+ ++ +S+ G VKRV Sbjct: 452 RIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADE 511 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG M+ D + + +H +V +F++ G V+K K + +P S + G Sbjct: 512 YRSQRRGGKGV-NTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLG 570 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + L L QGER+T IM Y++ T+ G+V++ SG Sbjct: 571 VSAAAFLKLAQGERVTEIMK----APPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKI 626 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ DE++SV + +I + + G+ F S IR GR S+GVR + L +GD + Sbjct: 627 ITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTI 685 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ +V + Sbjct: 686 LTAFVVNSDED------------------------------------------------- 696 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 IL++SEKG+GKRT+ +F I +R G+ ++ G + PV D D++IL Sbjct: 697 ----ILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVIL 750 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VS IR+ +EI SR T GV + D+RV++ I+ Sbjct: 751 VSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 793 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 11/231 (4%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAKGDQ 734 +K E + E +++ + G R R R GV + + D Sbjct: 475 IKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRS-QRRGGKGVNTSMKTS--DS 531 Query: 735 VISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + SM + K + + S + +++ +G E + Sbjct: 532 IKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA 591 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K +++ V+ G K+T++ + + G++ + + LV+V + Sbjct: 592 PPEKGYYLILVTRDGSVKKTAAD--PVFDSKSSGLKIITL---EDDDELVSVSYTAGDKN 646 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I ++S KG +EIR R + GV + + +++ + E + Sbjct: 647 IFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTILTAFVVNSDEDI 697 >gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1] gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1] Length = 810 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 302/888 (34%), Positives = 493/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQ++SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + D+ I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + +EL L IK+ DI Sbjct: 413 --------------LNFGLSEIQANSVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +L+L E I + + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELLNLGDQEEI---LTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++ + V Sbjct: 695 LKEGDLLVKVLAVR---------------------------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+LVS + +R ++ + +G+ + + +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDS-DSLVSVSK 807 Score = 88.7 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD+++ V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + + I + + + + Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLTDDAY 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + +V V +RE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLLVKVLAVREN 710 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 103/291 (35%), Gaps = 80/291 (27%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---- 731 + L++ DE++ + ++ + K + F +S I+ + V + L K Sbjct: 386 IALNNIDEVIKIIKSSK---LAKDAKERLVLNFGLSEIQ------ANSVLDMKLQKLTAL 436 Query: 732 -----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGN 784 D++ ++L DY++ + + R + + + + + + Sbjct: 437 EIFKLEDEL---KVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEE 493 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ +V Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIA 550 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNE------------IRIA------------------- 873 VN +D + ++S++G L + E I Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLT 610 Query: 874 -----------SRATK------------GVVIFSTAKDERVVSVERIRESE 901 + + GV++ + V S E + + E Sbjct: 611 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661 >gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04] gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04] Length = 810 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 303/888 (34%), Positives = 493/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A LV+E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S + AR L+ Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVA----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D V V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I + + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEI---LTIKNSKEFTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD + + + Sbjct: 695 LKEGDLFVKVLAIRE--------------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +SE G+GKR S R G + S + G++V V+ Sbjct: 710 --------NPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+LVS + +R ++ + +G+ + ++ +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%) Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + + +EN +++ TK G R + + G G+ L GD+V V Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEVAIALCVN 554 Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 D +E Y+ + + + S + + I + + + + Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSY 614 Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G R S DF+ + +R G+ + N+ + + V ++++I +S Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVLKDEKVICLSK 668 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 KG+ ++R+ +R T+GV + + V V IRE+ Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIREN 710 Score = 61.3 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + + + +L KE ++ +++KGF KR S ++++ GKG+ + D+ N+ + Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEV 547 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873 VN +D + ++S++G L + E I Sbjct: 548 AIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607 Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901 + + GV++ + V S E + + E Sbjct: 608 EFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVLKDE 661 >gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6] gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6] Length = 776 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 312/865 (36%), Positives = 475/865 (54%), Gaps = 106/865 (12%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 I+ E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+ K Y KCARI G Sbjct: 6 EISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVG 65 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +V+GKYHPHG+AA+YDAL RMAQD+++R LI+GQGNFGS+DGD PAA RYTE RL K A Sbjct: 66 DVLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIA 125 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 +L D+ KDTVDF PN+D + +EP VL A+ PN+L+NG GIAVGMATN+P HNL EV Sbjct: 126 EEMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVC 185 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 D +A + NPDI + LM+ ++ PDFPTG VI+GR G+ +AY TG+G I +RG IE Sbjct: 186 DAIIAYLQNPDITVRELMKYVKAPDFPTGGVIVGRKGLIDAYETGKGKITVRGRVEIEN- 244 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 I++ EIPY VNKA ++EKIAEL+ ++ +RDESDR+G R+V+E++ Sbjct: 245 ----NTIIIREIPYMVNKARLVEKIAELINSGKLEAKT-VRDESDREGIRIVVEVREDI- 298 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 + L +LY YT+LQ+ F + +AL +P +L +++ +V R VV RRT+Y L K Sbjct: 299 -NTALKKLYAYTNLQTTFGIINLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKK 357 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A++R H++ GL A+ ++D V+++I+ S +P A+ LM+R Sbjct: 358 AKERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMER------------------- 398 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSEVQ AIL+ RL +LT + D + E L +IKE +IL+S R+ Sbjct: 399 -------YELSEVQADAILQTRLQKLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDA 451 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 II EL +K++ RRT IVE ++ E+ + E+ ++ V+ G+VKR+ + ++ Q Sbjct: 452 IIASELEEIKEKYGDERRTEIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIG-FKTQ 510 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RGG G G+ MR +D + ++ +L F++ Y + +P +G + Sbjct: 511 HRGGVGVIGIGMRGDDEPAIIVKCNSRDKLLVFTAS-KAYWLNAYEIPKQERTGKGVNIR 569 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 LS+ +GERI I+PF ++ T+ G ++R LS+F R+G +A Sbjct: 570 MYLSIPEGERIVAIVPFQNF-----EGDILILTEDGYIKRTPLSEFENAKRAGIVASGGK 624 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 ++ ++ + T G VRF + GR++ GV+ ISL +GD + ++ Sbjct: 625 -----IAFARHLDGKEVFIATTNGYAVRFKAEDV-PEYGRSAKGVKAISLRQGDSIAWLS 678 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 + Sbjct: 679 CIRGDGD----------------------------------------------------- 685 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ILT++ G GKRT+ ++R+ +R G+ G +V V ++ ++ +S Sbjct: 686 ILTLTADGHGKRTAVEEYRLVSRGAMGVINA------RSGGVVFSEYVEGDEDLLTISKD 739 Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884 G +++ V I R +GV++ Sbjct: 740 GYALKIEVKSIPRQGRNARGVIVSR 764 Score = 86.8 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 13/225 (5%) Query: 680 SRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 D +S E + E +IL+ TK G R I R VGV GI + D+ + Sbjct: 474 EEDGEISAEELVSFEENILIVTKNGFVKRMSIG--FKTQHRGGVGVIGIGMRGDDEPAII 531 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 D ++A T + +++ S+ + E Sbjct: 532 VKCNSRDKLLVFTASKAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPFQNFEG 591 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 IL ++E G+ KRT +F + R+ GI A G + + D ++ + + Sbjct: 592 DILILTEDGYIKRTPLSEFENAKRA--GIVA-------SGGKIAFARHL-DGKEVFIATT 641 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 G +R ++ R+ KGV S + + + + IR + Sbjct: 642 NGYAVRFKAEDVPEYGRSAKGVKAISLRQGDSIAWLSCIRGDGDI 686 >gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728] gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma acidophilum] Length = 796 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 305/883 (34%), Positives = 485/883 (54%), Gaps = 92/883 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++ E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV +K Y KCAR Sbjct: 5 EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 64 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I GE MGKYHPHG+ AIYDAL RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL Sbjct: 65 IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 124 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A ++DD+ ++TV FR N+DG+ EP L ++ PN+L+NG GIAVGMATN+ HNL Sbjct: 125 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 184 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E+ D + +D+ D +D L++ ++GPDFP G ++ + AY TGRG ++++G Sbjct: 185 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQGEVDA 244 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + ++++ IPY VNKA +++ IA+L + + I DI D++DESDR G R+VI+++ Sbjct: 245 TEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRD 300 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 ++LNQLY +T+L+S + + L G +P+ L ++ +F+ R +V++RR+++ Sbjct: 301 DDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 360 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L++ ++R VL G+ AV ++D VV I++ S + + A Sbjct: 361 LDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEA----------------------- 397 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 + L++ Q +AILE+RL RL ++ +R+E+ + EIK+ +I+ S R Sbjct: 398 ---SSKLRNEFDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDR 454 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + K+E+ ++ + RR+RI + + ED I E+ ++ +S+ G VKRV Sbjct: 455 RIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADE 514 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG M+ D + + +H +V +F++ G V+K K + +P S + G Sbjct: 515 YRSQRRGGKGV-NTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLG 573 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + L L QGER+T IM Y++ T+ G+V++ SG Sbjct: 574 VSAAAFLKLAQGERVTEIMK----APPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKI 629 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ DE++SV + ++ + + G+ F S IR GR S+GVR + L +GD + Sbjct: 630 ITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTI 688 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ +V + Sbjct: 689 LTAFVVNSDED------------------------------------------------- 699 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 IL++SEKG+GKRT+ +F I +R G+ ++ G + PV D D++IL Sbjct: 700 ----ILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVIL 753 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VS IR+ +EI SR T GV + D+RV++ I+ Sbjct: 754 VSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 Score = 78.3 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 11/231 (4%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAKGDQ 734 +K E + E +++ + G R R R GV + + D Sbjct: 478 IKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRS-QRRGGKGVNTSMKTS--DS 534 Query: 735 VISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + SM + K + + S + +++ +G E + Sbjct: 535 IKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA 594 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K +++ V+ G K+T++ + + G++ + + LV+V + Sbjct: 595 PPEKGYYLILVTRDGSVKKTAAD--PVFDSKSSGLKIITL---EDDDELVSVSYTAGDKN 649 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + ++S KG +EIR R + GV + + +++ + E + Sbjct: 650 MFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTILTAFVVNSDEDI 700 >gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi] gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi] Length = 810 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 302/888 (34%), Positives = 490/888 (55%), Gaps = 87/888 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDS