RPSBLAST alignment for GI: 254780182 and conserved domain: smart00434
>gnl|CDD|128711 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC. Length = 445
Score = 571 bits (1473), Expect = e-163
Identities = 245/486 (50%), Positives = 311/486 (63%), Gaps = 47/486 (9%)
Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
+ I D + YL Y+++VI GRAIPD+RDGLKPV RRIL+ M + G+ ++ VK AR
Sbjct: 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGV 60
Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
G+VMGKYHPHG++++YDA+ RMAQD+S L++GQGNFGS DGD AA RYTE RL
Sbjct: 61 GDVMGKYHPHGDSSLYDAIVRMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSP 120
Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
A LL D+ KDTVDF PNYDG EP VL PN+LVNG GIAVGMATNIP HNL E
Sbjct: 121 LARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMATNIPPHNLRE 180
Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
V+D +IDNP+ +D LM I GPDFPTG I+ G GS V+RG IE
Sbjct: 181 VIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII-----------GPGSYVVRGKIEIE 229
Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIELKR 316
R IV+TE+PYQVNKA ++EKIAELV++K+I I D+RDES DR G R+VIELKR
Sbjct: 230 D---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKR 286
Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
GA A+V+LN LY+ T LQS FS+NM+AL NG KP+++ L ILK F+ R EV RR +
Sbjct: 287 GAMAEVVLNGLYKLTKLQSTFSINMLALFDNG-KPKKYNLKEILKEFLDHRLEVYTRRKE 345
Query: 375 YLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQRSWNASDIKDLID 432
YLL K +R H+L GL IA++ +DE++ +IR S + + A+ LM+R
Sbjct: 346 YLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKELLMERF----------- 394
Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
LSE Q AIL++RL RLT L + + EL L EI++ IL+
Sbjct: 395 ---------------ELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILA 439
Query: 493 SRSRLL 498
S L
Sbjct: 440 SELWLN 445