RPSBLAST alignment for GI: 254780182 and conserved domain: smart00434

>gnl|CDD|128711 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC. Length = 445
 Score =  571 bits (1473), Expect = e-163
 Identities = 245/486 (50%), Positives = 311/486 (63%), Gaps = 47/486 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I D +   YL Y+++VI GRAIPD+RDGLKPV RRIL+ M + G+  ++  VK AR  
Sbjct: 1   IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G+VMGKYHPHG++++YDA+ RMAQD+S    L++GQGNFGS  DGD  AA RYTE RL  
Sbjct: 61  GDVMGKYHPHGDSSLYDAIVRMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSP 120

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYDG   EP VL    PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 LARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMATNIPPHNLRE 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D    +IDNP+  +D LM I  GPDFPTG  I+           G GS V+RG   IE
Sbjct: 181 VIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII-----------GPGSYVVRGKIEIE 229

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIELKR 316
                R  IV+TE+PYQVNKA ++EKIAELV++K+I  I D+RDES DR G R+VIELKR
Sbjct: 230 D---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKR 286

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           GA A+V+LN LY+ T LQS FS+NM+AL  NG KP+++ L  ILK F+  R EV  RR +
Sbjct: 287 GAMAEVVLNGLYKLTKLQSTFSINMLALFDNG-KPKKYNLKEILKEFLDHRLEVYTRRKE 345

Query: 375 YLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQRSWNASDIKDLID 432
           YLL K   +R H+L GL IA++ +DE++ +IR S +  + A+  LM+R            
Sbjct: 346 YLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKELLMERF----------- 394

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++RL RLT L  + +  EL  L  EI++   IL+
Sbjct: 395 ---------------ELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILA 439

Query: 493 SRSRLL 498
           S   L 
Sbjct: 440 SELWLN 445