RPSBLAST alignment for GI: 254780182 and conserved domain: cd00187

>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.. Length = 445

 Score =  572 bits (1475), Expect = e-163
 Identities = 240/472 (50%), Positives = 309/472 (65%), Gaps = 30/472 (6%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
           GRA+PD+RDGLKPV RRIL+ M + G+  +K   K AR+ G+V GKYHPHG++++YD + 
Sbjct: 2   GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD+S  + L++ QGNFGS DGD  AA RYTE RL   A  LL D+   TVDF PNYD
Sbjct: 62  RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G   EP VL   +PN+LVNG  GIAVGMATNIP HNL EV+D   A+IDNP+  +D LME
Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           II+GPDFPTG +I GR GI+ AY TGRG  +IRG   IE   G R  I +TE+PYQVNKA
Sbjct: 182 IIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDEG-RNTIEITELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + EKIAELV++K+I  I+D+RDESDR+G R VIELKRGA A+V+LN LY+ T LQ+ F 
Sbjct: 241 KLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFG 300

Query: 339 VNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           +NMVA   NG +P++  L  IL+ F+  R EV  RR +Y L KA  R H+L GL  A+ N
Sbjct: 301 INMVAFDPNG-RPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILN 359

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+ +IR S   + A++ L++                           +  SE+Q  A
Sbjct: 360 IDEVINLIRSS---DEAKKALIEELE-----------------------KLGFSEIQADA 393

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           IL++RL RLT L R+ +  EL  L  EI++   IL+S  R   + K+EL   
Sbjct: 394 ILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445