RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (910 letters)



>gnl|CDD|30537 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
           topoisomerase IV), A subunit [DNA replication,
           recombination, and repair].
          Length = 804

 Score =  931 bits (2409), Expect = 0.0
 Identities = 441/894 (49%), Positives = 584/894 (65%), Gaps = 93/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + I DEM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  +K
Sbjct: 2   SDPSEEIEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K ARI G+VMGKYHPHG+++IYDAL RMAQD+SLR  L++GQGNFGS+DGDP AA R
Sbjct: 62  KYKKSARIVGDVMGKYHPHGDSSIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL+D+ KDTVDF PNYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  +A+IDNPD  +D LMEII+GPDFPTG +I+GR+GI+ AY TGRGSI 
Sbjct: 182 IPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRGSIR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE T   REQIV+TEIPYQVNKA ++EKIAELV+EK+I  I+D+RDESDR+G R
Sbjct: 242 VRAKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A A+V+LN L++ T LQ+ F+VNM+AL   +P+   L  IL  F+  R EVV
Sbjct: 302 IVIELKRDAVAEVVLNNLFKLTDLQTSFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA +R H+L GL IA+ N+DEV+ IIR S +   A+ ELM R         
Sbjct: 362 TRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMAR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q  AIL+LRL RLTGL  + I  EL  L  EI +   
Sbjct: 413 -----------------FGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+S  RLL IIK+ELL +K +    RRT IVE   D  EDED I  ED+VVT+SH GY+
Sbjct: 456 ILASEERLLDIIKKELLEIKKKFGDERRTEIVEEEEDEIEDEDLIAEEDVVVTLSHKGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVPL  Y AQR      SG+ +++ DF+  LF  +TH ++LFF+S G VYK KV+ LP 
Sbjct: 516 KRVPLKGYEAQRV-----SGLGLKEGDFLERLFEANTHDTLLFFTSKGRVYKLKVYELPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS ++RG+ ++N+LSL +GE+IT ++P  +D+      Y+  ATK G V++  LS+F  I
Sbjct: 571 GSRRSRGEPIVNLLSLEKGEKITAVLPVNDDQ------YLFLATKKGYVKKTSLSEFKNI 624

Query: 669 NRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              GKIA+KL   DE++SV  T   ++DILL T  G+ +RFP S +R   GR + GV+GI
Sbjct: 625 RSKGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVRE-MGRGAKGVKGI 683

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD+V+S   V+  D                                          
Sbjct: 684 KLKEGDKVVS-LSVVEDDEAK--------------------------------------- 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTV+E+G+GKRT   ++ ++ R GKG+     +K N  G +VA   V
Sbjct: 704 ------------LLTVTERGYGKRTKISEYPVTKRGGKGVILIKGTKRN-RGKVVAAITV 750

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++D+I+L++ +G LIR  V+EI I  R T+GV + +  +DE+VVSV R++E +
Sbjct: 751 DEDDEIMLITSRGKLIRTAVSEISITGRNTQGVKLINLDEDEKVVSVARVKEED 804


>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
           bacterial DNA topoisomerase IV (C subunit, ParC),
           bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
           toposiomerases II. DNA topoisomerases are essential
           enzymes that regulate the conformational changes in DNA
           topology by catalysing the concerted breakage and
           rejoining of DNA strands during normal cellular growth..
          Length = 445

 Score =  572 bits (1475), Expect = e-163
 Identities = 240/472 (50%), Positives = 309/472 (65%), Gaps = 30/472 (6%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
           GRA+PD+RDGLKPV RRIL+ M + G+  +K   K AR+ G+V GKYHPHG++++YD + 
Sbjct: 2   GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD+S  + L++ QGNFGS DGD  AA RYTE RL   A  LL D+   TVDF PNYD
Sbjct: 62  RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G   EP VL   +PN+LVNG  GIAVGMATNIP HNL EV+D   A+IDNP+  +D LME
Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           II+GPDFPTG +I GR GI+ AY TGRG  +IRG   IE   G R  I +TE+PYQVNKA
Sbjct: 182 IIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDEG-RNTIEITELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + EKIAELV++K+I  I+D+RDESDR+G R VIELKRGA A+V+LN LY+ T LQ+ F 
Sbjct: 241 KLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFG 300

Query: 339 VNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           +NMVA   NG +P++  L  IL+ F+  R EV  RR +Y L KA  R H+L GL  A+ N
Sbjct: 301 INMVAFDPNG-RPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILN 359

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+ +IR S   + A++ L++                           +  SE+Q  A
Sbjct: 360 IDEVINLIRSS---DEAKKALIEELE-----------------------KLGFSEIQADA 393

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           IL++RL RLT L R+ +  EL  L  EI++   IL+S  R   + K+EL   
Sbjct: 394 ILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445


>gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A. 
          Length = 428

 Score =  555 bits (1434), Expect = e-158
 Identities = 229/467 (49%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RAIPD+RDGLKPV RRIL+ M ++G+  +KKY K AR+ G+VMGKYHPHG+A+IYDAL R
Sbjct: 1   RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           MAQD+   + L++GQGNFGS  DGD  AA RYTE RL K A  L  D+ KDTVDF PNYD
Sbjct: 61  MAQDFVGNIPLLDGQGNFGSRLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EP VL    PN+LVNG  GIAVGMATNIP HNLGEV+D  +A++D P+I L  L++
Sbjct: 121 GSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEVIDALIALLDGPEITL--LLK 178

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           I  GPDFPTG  I+G  GI+ AY TGRG I +R    IE    +R+ IV+TE+PY V   
Sbjct: 179 IP-GPDFPTGGGIIGSGGIREAYKTGRGKITVRAKIEIE----ERKTIVITELPYGVWTE 233

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++E I ELV+  +I   +D+RDESDR G R+VIELKRGA  +V+LN+LY+ T LQS FS
Sbjct: 234 KLIESIEELVKNGKI-KGSDIRDESDR-GVRIVIELKRGADPEVVLNKLYKKTKLQSSFS 291

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N + L    P+   L  ILK F+  R EV  RR +YLL K  +R H+L GL  A+  +D
Sbjct: 292 TNNLVLFDGGPKYLNLKEILKEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNKID 351

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            V+ +IR S +   A++EL++                             LSE+Q   +L
Sbjct: 352 FVIEVIRGSIDLNKAKKELIEE----------------------------LSEIQADYLL 383

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
           ++RL RLT    + +  E+  L  EI E   IL+S      +  +EL
Sbjct: 384 DMRLRRLTKEEIEKLEKEIEELEKEIAELEKILAS---EKKLWIKEL 427


>gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin
           structure and dynamics].
          Length = 842

 Score =  121 bits (305), Expect = 7e-28
 Identities = 68/628 (10%), Positives = 143/628 (22%), Gaps = 51/628 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +     V+I  E     +      I        +  +  +    L        +  K   
Sbjct: 73  KMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTG 132

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
                  ++   +         D   +MA   +    +   +        D      YT+
Sbjct: 133 GRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDED----YTK 188

Query: 133 CRLQ-KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
                    F + +L  D V             V       N   N              
Sbjct: 189 ITFSPDLEKFKMKELDDDIVALMARRAYDLAGSVKSVKVELN-GKNIPVKGFYDYVKMYL 247

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
                      +  +         +   +    F    V    +       T    +V +
Sbjct: 248 EVLWLNDD---LKPLHEVLNFRWEVALALSDVGFQQ--VSFVNSIATTKGGTHVDYVVDQ 302

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ +      ++      +     K  +   +  L+           R     + +   
Sbjct: 303 IVAKLIDVVKKKKVKKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSD 362

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            EL    +   I  +    + L    +     L   + +  +    +       +     
Sbjct: 363 CELSEKFTK-AIELKGVVESILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDANDAGTKT 421

Query: 372 RTK-YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
             K  L+    D A  L     AV+ L  V R                   +    ++  
Sbjct: 422 SEKCTLILTEGDSAKSL-----AVSGLSVVGR-----------------DYYGVFPLRGK 459

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +  + ++S+         L   +  AI+++   +            L    + I    D 
Sbjct: 460 LLNVREASHKQI------LKNAEINAIIKILGLQYKKK--YFDVESLRYGKLMIMTDQDH 511

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
             S  + L +I          L  P     +  ++             V   S   Y K 
Sbjct: 512 DGSHIKGL-LINFIHHFWPSLLQIPFLEEFITPIVKATKGK-----QEVSFYSLPEYEKW 565

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              +    +    K   G+         + F       +LF    G   +          
Sbjct: 566 KK-NTDNWKSWKIKYYKGLGTSTSKEAKEYFSDLDRHRILFKYDGGIDDEAIDMAFSKKK 624

Query: 611 PQARGKALINILSLNQGERITTIMPFPE 638
             AR + L   +      + T  +   +
Sbjct: 625 IDARKEWLRKYMPEYLY-KTTKFVTISD 651



 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 30/210 (14%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYA------INVILGRAIPDLRDGLKPVHRRILFGM 60
             D  +E     +         ++T +      I      +IP L DGLKP  R++LF  
Sbjct: 624 KIDARKEWLRKYMPEYLYKTTKFVTISDFVKELILFSNADSIPSLVDGLKPGQRKVLFTC 683

Query: 61  MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            +     +K+ VK A+++G V  M  YH HG  ++   +  +AQD+              
Sbjct: 684 FKRN---DKREVKVAQLAGSVAEMSAYH-HGEQSLMSTIVNLAQDFV------------- 726

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
              G   A+ RY   +L      L        + +    +   +     C   P VLVNG
Sbjct: 727 ---GKDAASARYIFTKLSPLTRLLFPPADDLLLKY--LNEDGQRVEPEYCPIIPMVLVNG 781

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
             GI  G +T IP +N  E+V     +I+ 
Sbjct: 782 AEGIGTGWSTFIPNYNPREIVKNIRRLING 811


>gnl|CDD|146561 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain,
           beta-propeller.  This repeat is found as 6 tandem copies
           at the C-termini of GyrA and ParC DNA gyrases. It is
           predicted to form 4 beta strands and to probably form a
           beta-propeller structure. This region has been shown to
           bind DNA non-specifically and may stabilize the
           DNA-topoisomerase complex.
          Length = 50

 Score = 58.6 bits (143), Expect = 7e-09
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           ED ++ ++  GYVKR PLS +  Q RG KG   + +++ D V  + +V+ 
Sbjct: 1   EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50



 Score = 54.8 bits (133), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            D ++L++ KG + R P++E     R  KGV   +  + ++VVSV  + E
Sbjct: 1   EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50



 Score = 50.9 bits (123), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           E  +L ++ KG+ KRT   +F    R  KG++A     + E   +V+V  VN+
Sbjct: 1   EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKA---INLKEGDKVVSVLVVNE 50



 Score = 50.2 bits (121), Expect = 3e-06
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           E+D+LL T  G   R P+S      GR + GV+ I+L +GD+V+S+ +V
Sbjct: 1   EDDLLLITSKGYVKRTPLSEFPE-QGRGAKGVKAINLKEGDKVVSVLVV 48



 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCT 691
            ++  T  G V+R  LS+F +  R   G  A+ L   D+++SV    
Sbjct: 3   DLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVN 49



 Score = 37.5 bits (88), Expect = 0.016
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +L  +S G+V +  +   P     A+G   IN   L +G+++ +++   E
Sbjct: 1   EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAIN---LKEGDKVVSVLVVNE 50


>gnl|CDD|30473 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 429

 Score = 28.7 bits (64), Expect = 7.2
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI--EIKECLDILSSRSRL 497
            IGSD     +EV     + L +  L  LG      E+NS GI     E L I   R  L
Sbjct: 131 VIGSDSPDADAEV-----IALAVEILEALGIGGFTLEINSRGILEGRLEYLGI-DQREAL 184

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           L  + +     K ELD   + R       +   D     D
Sbjct: 185 LRYLDKLDKIGKLELDEDSKRR--LKTNPLRVLDSKKDSD 222


>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
           [Amino acid transport and metabolism].
          Length = 389

 Score = 28.7 bits (64), Expect = 7.4
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 26/95 (27%)

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEV------VDGCVAVIDN---------PDI-DLDA 215
             +LV G GG+   +A  +  +  GEV       + C  + +           D  D+DA
Sbjct: 2   MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDA 61

Query: 216 LMEIIRGPDFPTGAVI------LGRTGIKNAYATG 244
           L+ +I+  D     VI      +  T +K    TG
Sbjct: 62  LVALIKDFD----LVINAAPPFVDLTILKACIKTG 92


>gnl|CDD|147355 pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like.
           This protein forms a hole, or portal, that enables DNA
           passage during packaging and ejection. It also forms the
           junction between the phage head (capsid) and the tail
           proteins. During SPP1 morphogenesis, Gp6 participates in
           the procapsid assembly reaction. This family also
           includes family Phage_min_cap, pfam05126.
          Length = 435

 Score = 28.5 bits (64), Expect = 9.4
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             Y+     D   V V       +    V ++ F+ N          RS   SD++ +  
Sbjct: 170 YTYVREGGGDLIEVDVIGERIPPHEFGRVPVVEFNNNDL--------RSPGLSDLEPVKS 221

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAIL 458
           LID    T+ S+      +   RAIL
Sbjct: 222 LIDAYDKTL-SEFANDFYDFP-RAIL 245


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 10,841,732
Number of extensions: 611036
Number of successful extensions: 1380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 22
Length of query: 910
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 807
Effective length of database: 4,038,010
Effective search space: 3258674070
Effective search space used: 3258674070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)