RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] (910 letters) >gnl|CDD|30537 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]. Length = 804 Score = 931 bits (2409), Expect = 0.0 Identities = 441/894 (49%), Positives = 584/894 (65%), Gaps = 93/894 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + + I + I DEM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+ +K Sbjct: 2 SDPSEEIEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY K ARI G+VMGKYHPHG+++IYDAL RMAQD+SLR L++GQGNFGS+DGDP AA R Sbjct: 62 KYKKSARIVGDVMGKYHPHGDSSIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL+D+ KDTVDF PNYDGS +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 122 YTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D +A+IDNPD +D LMEII+GPDFPTG +I+GR+GI+ AY TGRGSI Sbjct: 182 IPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRGSIR 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE T REQIV+TEIPYQVNKA ++EKIAELV+EK+I I+D+RDESDR+G R Sbjct: 242 VRAKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A A+V+LN L++ T LQ+ F+VNM+AL +P+ L IL F+ R EVV Sbjct: 302 IVIELKRDAVAEVVLNNLFKLTDLQTSFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y LNKA +R H+L GL IA+ N+DEV+ IIR S + A+ ELM R Sbjct: 362 TRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMAR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q AIL+LRL RLTGL + I EL L EI + Sbjct: 413 -----------------FGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEK 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+S RLL IIK+ELL +K + RRT IVE D EDED I ED+VVT+SH GY+ Sbjct: 456 ILASEERLLDIIKKELLEIKKKFGDERRTEIVEEEEDEIEDEDLIAEEDVVVTLSHKGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVPL Y AQR SG+ +++ DF+ LF +TH ++LFF+S G VYK KV+ LP Sbjct: 516 KRVPLKGYEAQRV-----SGLGLKEGDFLERLFEANTHDTLLFFTSKGRVYKLKVYELPE 570 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS ++RG+ ++N+LSL +GE+IT ++P +D+ Y+ ATK G V++ LS+F I Sbjct: 571 GSRRSRGEPIVNLLSLEKGEKITAVLPVNDDQ------YLFLATKKGYVKKTSLSEFKNI 624 Query: 669 NRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 GKIA+KL DE++SV T ++DILL T G+ +RFP S +R GR + GV+GI Sbjct: 625 RSKGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVRE-MGRGAKGVKGI 683 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +GD+V+S V+ D Sbjct: 684 KLKEGDKVVS-LSVVEDDEAK--------------------------------------- 703 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTV+E+G+GKRT ++ ++ R GKG+ +K N G +VA V Sbjct: 704 ------------LLTVTERGYGKRTKISEYPVTKRGGKGVILIKGTKRN-RGKVVAAITV 750 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++D+I+L++ +G LIR V+EI I R T+GV + + +DE+VVSV R++E + Sbjct: 751 DEDDEIMLITSRGKLIRTAVSEISITGRNTQGVKLINLDEDEKVVSVARVKEED 804 >gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.. Length = 445 Score = 572 bits (1475), Expect = e-163 Identities = 240/472 (50%), Positives = 309/472 (65%), Gaps = 30/472 (6%) Query: 39 GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98 GRA+PD+RDGLKPV RRIL+ M + G+ +K K AR+ G+V GKYHPHG++++YD + Sbjct: 2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61 Query: 99 RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158 RMAQD+S + L++ QGNFGS DGD AA RYTE RL A LL D+ TVDF PNYD Sbjct: 62 RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121 Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218 G EP VL +PN+LVNG GIAVGMATNIP HNL EV+D A+IDNP+ +D LME Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181 Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278 II+GPDFPTG +I GR GI+ AY TGRG +IRG IE G R I +TE+PYQVNKA Sbjct: 182 IIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDEG-RNTIEITELPYQVNKA 240 Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338 + EKIAELV++K+I I+D+RDESDR+G R VIELKRGA A+V+LN LY+ T LQ+ F Sbjct: 241 KLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFG 300 Query: 339 VNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396 +NMVA NG +P++ L IL+ F+ R EV RR +Y L KA R H+L GL A+ N Sbjct: 301 INMVAFDPNG-RPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILN 359 Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456 +DEV+ +IR S + A++ L++ + SE+Q A Sbjct: 360 IDEVINLIRSS---DEAKKALIEELE-----------------------KLGFSEIQADA 393 Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 IL++RL RLT L R+ + EL L EI++ IL+S R + K+EL Sbjct: 394 ILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445 >gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A. Length = 428 Score = 555 bits (1434), Expect = e-158 Identities = 229/467 (49%), Positives = 296/467 (63%), Gaps = 41/467 (8%) Query: 40 RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99 RAIPD+RDGLKPV RRIL+ M ++G+ +KKY K AR+ G+VMGKYHPHG+A+IYDAL R Sbjct: 1 RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVR 60 Query: 100 MAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158 MAQD+ + L++GQGNFGS DGD AA RYTE RL K A L D+ KDTVDF PNYD Sbjct: 61 MAQDFVGNIPLLDGQGNFGSRLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYD 120 Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218 GS +EP VL PN+LVNG GIAVGMATNIP HNLGEV+D +A++D P+I L L++ Sbjct: 121 GSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEVIDALIALLDGPEITL--LLK 178 Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278 I GPDFPTG I+G GI+ AY TGRG I +R IE +R+ IV+TE+PY V Sbjct: 179 IP-GPDFPTGGGIIGSGGIREAYKTGRGKITVRAKIEIE----ERKTIVITELPYGVWTE 233 Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338 ++E I ELV+ +I +D+RDESDR G R+VIELKRGA +V+LN+LY+ T LQS FS Sbjct: 234 KLIESIEELVKNGKI-KGSDIRDESDR-GVRIVIELKRGADPEVVLNKLYKKTKLQSSFS 291 Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398 N + L P+ L ILK F+ R EV RR +YLL K +R H+L GL A+ +D Sbjct: 292 TNNLVLFDGGPKYLNLKEILKEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNKID 351 Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458 V+ +IR S + A++EL++ LSE+Q +L Sbjct: 352 FVIEVIRGSIDLNKAKKELIEE----------------------------LSEIQADYLL 383 Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 ++RL RLT + + E+ L EI E IL+S + +EL Sbjct: 384 DMRLRRLTKEEIEKLEKEIEELEKEIAELEKILAS---EKKLWIKEL 427 >gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin structure and dynamics]. Length = 842 Score = 121 bits (305), Expect = 7e-28 Identities = 68/628 (10%), Positives = 143/628 (22%), Gaps = 51/628 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + V+I E + I + + + L + K Sbjct: 73 KMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTG 132 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 ++ + D +MA + + + D YT+ Sbjct: 133 GRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDED----YTK 188 Query: 133 CRLQ-KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 F + +L D V V N N Sbjct: 189 ITFSPDLEKFKMKELDDDIVALMARRAYDLAGSVKSVKVELN-GKNIPVKGFYDYVKMYL 247 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 + + + + F V + T +V + Sbjct: 248 EVLWLNDD---LKPLHEVLNFRWEVALALSDVGFQQ--VSFVNSIATTKGGTHVDYVVDQ 302 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ + ++ + K + + L+ R + + Sbjct: 303 IVAKLIDVVKKKKVKKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSD 362 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 EL + I + + L + L + + + + + Sbjct: 363 CELSEKFTK-AIELKGVVESILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDANDAGTKT 421 Query: 372 RTK-YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 K L+ D A L AV+ L V R + ++ Sbjct: 422 SEKCTLILTEGDSAKSL-----AVSGLSVVGR-----------------DYYGVFPLRGK 459 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + ++S+ L + AI+++ + L + I D Sbjct: 460 LLNVREASHKQI------LKNAEINAIIKILGLQYKKK--YFDVESLRYGKLMIMTDQDH 511 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 S + L +I L P + ++ V S Y K Sbjct: 512 DGSHIKGL-LINFIHHFWPSLLQIPFLEEFITPIVKATKGK-----QEVSFYSLPEYEKW 565 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + K G+ + F +LF G + Sbjct: 566 KK-NTDNWKSWKIKYYKGLGTSTSKEAKEYFSDLDRHRILFKYDGGIDDEAIDMAFSKKK 624 Query: 611 PQARGKALINILSLNQGERITTIMPFPE 638 AR + L + + T + + Sbjct: 625 IDARKEWLRKYMPEYLY-KTTKFVTISD 651 Score = 67.2 bits (164), Expect = 2e-11 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 30/210 (14%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYA------INVILGRAIPDLRDGLKPVHRRILFGM 60 D +E + ++T + I +IP L DGLKP R++LF Sbjct: 624 KIDARKEWLRKYMPEYLYKTTKFVTISDFVKELILFSNADSIPSLVDGLKPGQRKVLFTC 683 Query: 61 MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 + +K+ VK A+++G V M YH HG ++ + +AQD+ Sbjct: 684 FKRN---DKREVKVAQLAGSVAEMSAYH-HGEQSLMSTIVNLAQDFV------------- 726 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 G A+ RY +L L + + + + C P VLVNG Sbjct: 727 ---GKDAASARYIFTKLSPLTRLLFPPADDLLLKY--LNEDGQRVEPEYCPIIPMVLVNG 781 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208 GI G +T IP +N E+V +I+ Sbjct: 782 AEGIGTGWSTFIPNYNPREIVKNIRRLING 811 >gnl|CDD|146561 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller. This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex. Length = 50 Score = 58.6 bits (143), Expect = 7e-09 Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 ED ++ ++ GYVKR PLS + Q RG KG + +++ D V + +V+ Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50 Score = 54.8 bits (133), Expect = 1e-07 Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++L++ KG + R P++E R KGV + + ++VVSV + E Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50 Score = 50.9 bits (123), Expect = 1e-06 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E +L ++ KG+ KRT +F R KG++A + E +V+V VN+ Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKA---INLKEGDKVVSVLVVNE 50 Score = 50.2 bits (121), Expect = 3e-06 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 E+D+LL T G R P+S GR + GV+ I+L +GD+V+S+ +V Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPE-QGRGAKGVKAINLKEGDKVVSVLVV 48 Score = 44.0 bits (105), Expect = 2e-04 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 647 YVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCT 691 ++ T G V+R LS+F + R G A+ L D+++SV Sbjct: 3 DLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVN 49 Score = 37.5 bits (88), Expect = 0.016 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638 +L +S G+V + + P A+G IN L +G+++ +++ E Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAIN---LKEGDKVVSVLVVNE 50 >gnl|CDD|30473 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 429 Score = 28.7 bits (64), Expect = 7.2 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 10/100 (10%) Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI--EIKECLDILSSRSRL 497 IGSD +EV + L + L LG E+NS GI E L I R L Sbjct: 131 VIGSDSPDADAEV-----IALAVEILEALGIGGFTLEINSRGILEGRLEYLGI-DQREAL 184 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 L + + K ELD + R + D D Sbjct: 185 LRYLDKLDKIGKLELDEDSKRR--LKTNPLRVLDSKKDSD 222 >gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]. Length = 389 Score = 28.7 bits (64), Expect = 7.4 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 26/95 (27%) Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEV------VDGCVAVIDN---------PDI-DLDA 215 +LV G GG+ +A + + GEV + C + + D D+DA Sbjct: 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDA 61 Query: 216 LMEIIRGPDFPTGAVI------LGRTGIKNAYATG 244 L+ +I+ D VI + T +K TG Sbjct: 62 LVALIKDFD----LVINAAPPFVDLTILKACIKTG 92 >gnl|CDD|147355 pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes family Phage_min_cap, pfam05126. Length = 435 Score = 28.5 bits (64), Expect = 9.4 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 Y+ D V V + V ++ F+ N RS SD++ + Sbjct: 170 YTYVREGGGDLIEVDVIGERIPPHEFGRVPVVEFNNNDL--------RSPGLSDLEPVKS 221 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAIL 458 LID T+ S+ + RAIL Sbjct: 222 LIDAYDKTL-SEFANDFYDFP-RAIL 245 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.137 0.386 Gapped Lambda K H 0.267 0.0690 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 10,841,732 Number of extensions: 611036 Number of successful extensions: 1380 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1352 Number of HSP's successfully gapped: 22 Length of query: 910 Length of database: 6,263,737 Length adjustment: 103 Effective length of query: 807 Effective length of database: 4,038,010 Effective search space: 3258674070 Effective search space used: 3258674070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (27.7 bits)