RPSBLAST alignment of GI: 254780182 and protein with PDBid: 1bjt
>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793
Score = 273 bits (699), Expect = 1e-73
Identities = 82/543 (15%), Positives = 173/543 (31%), Gaps = 56/543 (10%)
Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
+ + I+D + + +++ + R+IP++ DG KP R++L+G + ++ K +
Sbjct: 257 PTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQ 315
Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLR----LLLIEGQGNFGSVDGDPPAAER 129
A E + HG ++ + +AQ++ LLL G + G AA R
Sbjct: 316 LAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 373
Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
Y L K + + + + EP P +LVNG GI G +T
Sbjct: 374 YIYTELNKLTRKIFHPADDPLYKYIQEDEKT-VEPEWYLPILPMILVNGAEGIGTGWSTY 432
Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
IP N E++ ++++ +++ P F TG R +
Sbjct: 433 IPPFNPLEIIKNIRHLMNDEELE-------QMHPWFRGW------TGTIEEIEPLRYRM- 478
Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQGY 308
+ + +TE+P + + + E + + I +E
Sbjct: 479 -----YGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNI 533
Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFR 365
+ +I L A Y L S S+ + +G + ++ IL F R
Sbjct: 534 KFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVR 593
Query: 366 EEVVVRRTKYLLNKARDRAHVL------------VGLAIAVANLDEVVRIIRFSPNPETA 413
E +R ++ + + L + + +++ + P
Sbjct: 594 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN 653
Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTI-----------GSDGTMYLSEVQTRAILELRL 462
+ +I + I+ + ++ +L +R+
Sbjct: 654 KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRI 713
Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSR--SRLLGIIKQELLSVKDELDTPRRTRI 520
LT + + E++ L + + + L + R +
Sbjct: 714 WSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARGGNV 773
Query: 521 VEG 523
Sbjct: 774 PNK 776