RPSBLAST alignment of GI: 254780182 and protein with PDBid: 1zi0

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Length = 307

 Score =  253 bits (646), Expect = 2e-67
 Identities = 130/364 (35%), Positives = 204/364 (56%), Gaps = 59/364 (16%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS 
Sbjct: 3   EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 62

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  E       + V  AT +G
Sbjct: 63  GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF---EEGVKVFMATANG 119

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R 
Sbjct: 120 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR- 178

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G N+ GVRGI L +GD+V                                        
Sbjct: 179 AMGCNTTGVRGIRLGEGDKV---------------------------------------- 198

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    +S    +     +  ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ 
Sbjct: 199 ---------VSLIVPRG----DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 244

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++
Sbjct: 245 -RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 303

Query: 896 RIRE 899
           R+ E
Sbjct: 304 RVAE 307