RPSBLAST alignment of GI: 254780182 and protein with PDBid: 1zvu

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Length = 716
 Score =  555 bits (1432), Expect = e-158
 Identities = 234/810 (28%), Positives = 373/810 (46%), Gaps = 108/810 (13%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
             MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           +DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 217 MEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           ++I++GPD+PT A I+  R  I+  Y  GRGS+ +R V   E        +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE-----DGAVVISALPHQV 235

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV--VIELKRGASADVILNQLYRYTSL 333
           + A +LE+IA  +R K++  + DLRDESD +      ++        D ++N L+  T L
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 334 QSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  + +N+ +     +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL +
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A  N+DEV+ IIR    P+ A   LM R                            L+E 
Sbjct: 356 AFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FGLTET 386

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +     
Sbjct: 387 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446

Query: 513 DTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              RR+ + E      M + D +  E + + +S +G+V+        A            
Sbjct: 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-------- 498

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D         ++  V+F  S G  Y      LP      +G+ L   L+L  G  +
Sbjct: 499 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATV 556

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             ++   +D+       ++ A+  G       +D +  NR+GK  + L     ++     
Sbjct: 557 DHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 610

Query: 691 TQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              +D +L  T+ G+ + FP+S +     +   G + I++   +       +        
Sbjct: 611 EDASDMLLAITQAGRMLMFPVSDLPQL-SKGK-GNKIINIPSAEAARGEDGLAQLY---- 664

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                         ++   +                              +     K   
Sbjct: 665 --------------VLPPQST-----------------------------LTIHVGKRKI 681

Query: 810 KRT-SSYDFRISNRSGKGIRATDVSKINEI 838
           K            R  +G     + +I+ +
Sbjct: 682 KLRPEELQKVTGERGRRGTLMRGLQRIDRV 711