RPSBLAST alignment of GI: 254780182 and protein with PDBid: 1zvu
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Length = 716
Score = 555 bits (1432), Expect = e-158
Identities = 234/810 (28%), Positives = 373/810 (46%), Gaps = 108/810 (13%)
Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
+ RA+P + DGLKPV RRI++ M ++G+ + K+ K AR G+V+GKYHPHG++A Y+A+
Sbjct: 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60
Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
MAQ +S R L++GQGN+G+ D AA RYTE RL K + LL +LG+ T D+ PN
Sbjct: 61 VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120
Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
+DG+ QEP +L AR PN+L+NG GIAVGMAT+IP HNL EV +A+ID P LD L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180
Query: 217 MEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
++I++GPD+PT A I+ R I+ Y GRGS+ +R V E +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE-----DGAVVISALPHQV 235
Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV--VIELKRGASADVILNQLYRYTSL 333
+ A +LE+IA +R K++ + DLRDESD + ++ D ++N L+ T L
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295
Query: 334 QSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
+ + +N+ + +P L+ IL ++ FR + V RR Y L K R H+L GL +
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355
Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
A N+DEV+ IIR P+ A LM R L+E
Sbjct: 356 AFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FGLTET 386
Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
Q AILEL+L L L IR E + L E + IL+S ++ ++K+EL +
Sbjct: 387 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446
Query: 513 DTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
RR+ + E M + D + E + + +S +G+V+ A
Sbjct: 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-------- 498
Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
+ D ++ V+F S G Y LP +G+ L L+L G +
Sbjct: 499 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATV 556
Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
++ +D+ ++ A+ G +D + NR+GK + L ++
Sbjct: 557 DHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 610
Query: 691 TQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
+D +L T+ G+ + FP+S + + G + I++ + +
Sbjct: 611 EDASDMLLAITQAGRMLMFPVSDLPQL-SKGK-GNKIINIPSAEAARGEDGLAQLY---- 664
Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
++ + + K
Sbjct: 665 --------------VLPPQST-----------------------------LTIHVGKRKI 681
Query: 810 KRT-SSYDFRISNRSGKGIRATDVSKINEI 838
K R +G + +I+ +
Sbjct: 682 KLRPEELQKVTGERGRRGTLMRGLQRIDRV 711