RPSBLAST alignment of GI: 254780182 and protein with PDBid: 3ilw

>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, structural genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} Length = 470
 Score =  498 bits (1284), Expect = e-141
 Identities = 224/491 (45%), Positives = 310/491 (63%), Gaps = 31/491 (6%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IYD
Sbjct: 5   VIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYD 64

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +L ++ ++TVDF P
Sbjct: 65  SLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIP 124

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD- 214
           NYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HNL E+ D     ++N D D + 
Sbjct: 125 NYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEEE 184

Query: 215 ---ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
              A+M  ++GPDFPT  +I+G  G  +AY TGRGSI +RGV  +E+ S  R  +V+TE+
Sbjct: 185 TLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITEL 244

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRY 330
           PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R+VIE+KR A A V++N LY++
Sbjct: 245 PYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKH 304

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T LQ+ F  NM+A+    P    L  +++ +V  + +V+VRRT Y L KA +RAH+L GL
Sbjct: 305 TQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGL 364

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
             A+  LDEV+ +IR S   + AR  L++                           + + 
Sbjct: 365 VKALDALDEVIALIRASETVDIARAGLIEL--------------------------LDID 398

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  + D
Sbjct: 399 EIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVD 458

Query: 511 ELDTPRRTRIV 521
                RRTRI+
Sbjct: 459 RHGDDRRTRII 469