BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] (910 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 1853 bits (4800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 910/910 (100%), Positives = 910/910 (100%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM Sbjct: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 Query: 901 EIVDEAESTE 910 EIVDEAESTE Sbjct: 901 EIVDEAESTE 910 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/697 (35%), Positives = 374/697 (53%), Gaps = 65/697 (9%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 ++I +S+ E+ + +VS+ ++ YL YA++ I RAIPDLRDG KPVHRRI+ M + Sbjct: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 MG+++ + K ARI GEV+GK HPHG+ ++YD+L R+AQ + R LI GQGNFG++DG Sbjct: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ + A +L + +D VDFR Y+ EPVV +++PN+L NG GI Sbjct: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241 AVGMAT+IP+HN+ E+ + +A+IDNP+I ++ L+E I GPDFPTG +I+ R I +Y Sbjct: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG +R +E+ IVVTEIPYQV K+ ++EKIAEL+ KRI + D+RD Sbjct: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360 ES V+ R D+++ ++ + +++ F +NM L+ G P+ L GILK Sbjct: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A R EV+ RR+ + + R +L GL IA N+DE++ IIR P+ ++ R Sbjct: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L+E Q AIL LRL L L I++EL++L Sbjct: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-----E 530 E ++ +L+S + I E+ VK+ RRT E + D + Sbjct: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQ 512 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 I +E + V +S+ G++ R+ + S + ++ D + T +L Sbjct: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 Query: 591 FFSSLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 S+ G K + LP G S + G+A+ ++ LN + I T + S L Sbjct: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 VV + GN + S+ I R GK +K+ S +++ Sbjct: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 >gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 27.7 bits (60), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%) Query: 848 NDNDQIILVSDK---GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N N + +L++DK GTL+R+ N +I S K I ST VV VE Sbjct: 150 NPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVST-----VVKVE 195 >gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 26.6 bits (57), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 326 QLYRYTSLQSLFSVNMVALN-GYKPERFTLIG------ILKAFVAFREEVVVRRTKYLLN 378 QL R +S+ ++ + + L GY +LIG +++ F+A + V V T ++ Sbjct: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Query: 379 KARDRAHVLVGL 390 +R+RA +L+ L Sbjct: 111 LSRERAKILLNL 122 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 25.4 bits (54), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 GMA N+ N+G V+ G I DI + R D P G +LGR Sbjct: 61 GMALNLEVDNVGVVILGSYKEISEGDI----VKRTGRIVDVPVGLELLGR 106 >gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 24.6 bits (52), Expect = 7.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 17/53 (32%) Query: 358 LKAFVAFREEVVVRRTKYL-----------------LNKARDRAHVLVGLAIA 393 L+ FVA EEV++R K L LNK RD +L+ IA Sbjct: 116 LRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIA 168 >gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Length = 692 Score = 24.6 bits (52), Expect = 7.5, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 +NL VV T V RN LS + + +LD + L+ ETC+ Sbjct: 479 DNLAVVL-THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSH 527 >gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 24.3 bits (51), Expect = 9.5, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 R +I + LN++G++I + + ++ G+ + LL D L Sbjct: 187 RSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNL 229 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.137 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 561,404 Number of Sequences: 1233 Number of extensions: 23947 Number of successful extensions: 80 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 10 length of query: 910 length of database: 328,796 effective HSP length: 82 effective length of query: 828 effective length of database: 227,690 effective search space: 188527320 effective search space used: 188527320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 43 (21.2 bits)