BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(910 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Length = 910
Score = 1853 bits (4800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/910 (100%), Positives = 910/910 (100%)
Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM
Sbjct: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV
Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA
Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR
Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK
Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN
Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN
Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS
Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA
Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES
Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
Query: 901 EIVDEAESTE 910
EIVDEAESTE
Sbjct: 901 EIVDEAESTE 910
>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 753
Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/697 (35%), Positives = 374/697 (53%), Gaps = 65/697 (9%)
Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
++I +S+ E+ + +VS+ ++ YL YA++ I RAIPDLRDG KPVHRRI+ M +
Sbjct: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
MG+++ + K ARI GEV+GK HPHG+ ++YD+L R+AQ + R LI GQGNFG++DG
Sbjct: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
D AA RYTE R+ + A +L + +D VDFR Y+ EPVV +++PN+L NG GI
Sbjct: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241
AVGMAT+IP+HN+ E+ + +A+IDNP+I ++ L+E I GPDFPTG +I+ R I +Y
Sbjct: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
GRG +R +E+ IVVTEIPYQV K+ ++EKIAEL+ KRI + D+RD
Sbjct: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360
ES V+ R D+++ ++ + +++ F +NM L+ G P+ L GILK
Sbjct: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
++A R EV+ RR+ + + R +L GL IA N+DE++ IIR P+ ++ R
Sbjct: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
L+E Q AIL LRL L L I++EL++L
Sbjct: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-----E 530
E ++ +L+S + I E+ VK+ RRT E + D +
Sbjct: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQ 512
Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
I +E + V +S+ G++ R+ + S + ++ D + T +L
Sbjct: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
Query: 591 FFSSLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
S+ G K + LP G S + G+A+ ++ LN + I T + S L
Sbjct: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
VV + GN + S+ I R GK +K+ S +++
Sbjct: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
>gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 298
Score = 27.7 bits (60), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 848 NDNDQIILVSDK---GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
N N + +L++DK GTL+R+ N +I S K I ST VV VE
Sbjct: 150 NPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVST-----VVKVE 195
>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 26.6 bits (57), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 326 QLYRYTSLQSLFSVNMVALN-GYKPERFTLIG------ILKAFVAFREEVVVRRTKYLLN 378
QL R +S+ ++ + + L GY +LIG +++ F+A + V V T ++
Sbjct: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
Query: 379 KARDRAHVLVGL 390
+R+RA +L+ L
Sbjct: 111 LSRERAKILLNL 122
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 25.4 bits (54), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
GMA N+ N+G V+ G I DI + R D P G +LGR
Sbjct: 61 GMALNLEVDNVGVVILGSYKEISEGDI----VKRTGRIVDVPVGLELLGR 106
>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Length = 257
Score = 24.6 bits (52), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 17/53 (32%)
Query: 358 LKAFVAFREEVVVRRTKYL-----------------LNKARDRAHVLVGLAIA 393
L+ FVA EEV++R K L LNK RD +L+ IA
Sbjct: 116 LRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIA 168
>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 692
Score = 24.6 bits (52), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
+NL VV T V RN LS + + +LD + L+ ETC+
Sbjct: 479 DNLAVVL-THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSH 527
>gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 458
Score = 24.3 bits (51), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
R +I + LN++G++I + + ++ G+ + LL D L
Sbjct: 187 RSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNL 229
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,404
Number of Sequences: 1233
Number of extensions: 23947
Number of successful extensions: 80
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 10
length of query: 910
length of database: 328,796
effective HSP length: 82
effective length of query: 828
effective length of database: 227,690
effective search space: 188527320
effective search space used: 188527320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)