HHsearch alignment for GI: 254780183 and conserved domain: COG1570
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair].
Probab=94.56 E-value=0.14 Score=29.85 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=54.4
Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159)
Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159)
T Consensus 23 ~~~V~v~GEISn---~t~~~sgH~Y--FtL------K--------D~~A~i~c~mf~~-~~~~l~f~p~eG~~V~v~G~i 82 (440)
T COG1570 23 LGQVWVRGEISN---FTRPASGHLY--FTL------K--------DERAQIRCVMFKG-NNRRLKFRPEEGMQVLVRGKI 82 (440)
T ss_pred CCEEEEEEEECC---CCCCCCCCEE--EEE------C--------CCCCEEEEEEECC-CCCCCCCCCCCCCEEEEEEEE
T ss_conf 785999999637---7668886079--997------1--------6771689999747-000268786679889999778
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 333320468837688999997769
Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMV 108 (159)
Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~ 108 (159)
T Consensus 83 s~Y~---~rG----~YQi~~~~~~ 99 (440)
T COG1570 83 SLYE---PRG----DYQIVAESME 99 (440)
T ss_pred EEEC---CCC----CEEEEEECCC
T ss_conf 8876---988----5699983278