HHsearch alignment for GI: 254780183 and conserved domain: COG1570

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair].
Probab=94.56  E-value=0.14  Score=29.85  Aligned_cols=77  Identities=18%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
T Consensus        23 ~~~V~v~GEISn---~t~~~sgH~Y--FtL------K--------D~~A~i~c~mf~~-~~~~l~f~p~eG~~V~v~G~i   82 (440)
T COG1570          23 LGQVWVRGEISN---FTRPASGHLY--FTL------K--------DERAQIRCVMFKG-NNRRLKFRPEEGMQVLVRGKI   82 (440)
T ss_pred             CCEEEEEEEECC---CCCCCCCCEE--EEE------C--------CCCCEEEEEEECC-CCCCCCCCCCCCCEEEEEEEE
T ss_conf             785999999637---7668886079--997------1--------6771689999747-000268786679889999778


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             333320468837688999997769
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMV  108 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~  108 (159)
T Consensus        83 s~Y~---~rG----~YQi~~~~~~   99 (440)
T COG1570          83 SLYE---PRG----DYQIVAESME   99 (440)
T ss_pred             EEEC---CCC----CEEEEEECCC
T ss_conf             8876---988----5699983278