HHsearch alignment for GI: 254780183 and conserved domain: COG2965
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair].
Probab=97.83 E-value=0.00038 Score=45.01 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE--ECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7783799996425886679869998699999983456420268845301124--30211015898772211047715999
Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW--HSVIVFSEELCRIVEQYLRKGSKVYI 80 (159)
Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~--~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159)
T Consensus 2 ~~~Nrl~L~g~vak~~~r~~sPsGIphc~f~Leh-rs~q~Eag~~---RQv~~~mpv~vsG~q-a~~lt~~i~~Gs~i~v 76 (103)
T COG2965 2 NMTNRLSLSGTVAKVPVRRYSPSGIPHCQFVLEH-RSWQEEAGFQ---RQVWCEMPVRVSGRQ-AEELTQSITVGSYILV 76 (103)
T ss_pred CCCCEEEEEEEEEECCEEEECCCCCEEEEEEEEE-CCHHHHCCCC---EEEEEECCEEEECHH-HHHHHHCCCCCCEEEE
T ss_conf 7442456776531064050089998468999950-5256567851---169998017760445-5665422356648999
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 8413333320468837688999997769846
Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 77 ~GFla~~~~--~sg~~--~lvlha~qi~~id 103 (103)
T COG2965 77 VGFLACHKR--RSGLS--KLVLHAEQIEFID 103 (103)
T ss_pred EEEEEEECC--CCCCC--EEEEEEEEEEECC
T ss_conf 997776025--37861--7999800788339