HHsearch alignment for GI: 254780183 and conserved domain: PRK06920
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed.
Probab=93.41 E-value=0.65 Score=25.77 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=53.9
Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159)
Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159)
T Consensus 944 ~~~~~~g~i~~-~~~~~tk~g~~maf~~le--------------D~tg~~e~vvFp~~~-~~~~~~l~~~~~~~v~G~v~ 1007 (1107)
T PRK06920 944 KVQRAIVYITS-VKVIRTKKGQKMAFITFC--------------DQNDEMEAVVFPETY-IHFSDKLQEGAIVLVDGTIE 1007 (1107)
T ss_pred CEEEEEEEEEE-EEEEECCCCCEEEEEEEE--------------ECCCCEEEEECHHHH-HHHHHHHCCCCEEEEEEEEE
T ss_conf 88999999988-898636889969999999--------------799868999997999-99999853698799999999
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 33320468837688999997769846
Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 1008 ~~~-----~~----~~~~~~~~~~~~ 1024 (1107)
T PRK06920 1008 LRN-----HK----LQWIVNGLYPLE 1024 (1107)
T ss_pred EEC-----CC----CEEEEEEEEEHH
T ss_conf 767-----95----307988643067