HHsearch alignment for GI: 254780183 and conserved domain: cd04474

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=91.32  E-value=0.78  Score=25.33  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             CCCEEEEEEEECCCCEEEECCCC---CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             78379999642588667986999---869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQDG---RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~g---~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
T Consensus         8 ~~~~w~Ik~RV~~Ks~ir~~~n~~g~gk~f~~~L------~De~g~-------eI~at~f~~-~~dkf~~~l~~G~vY~i   73 (104)
T cd04474           8 YQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDL------LDEDGG-------EIRATFFND-AVDKFYDLLEVGKVYYI   73 (104)
T ss_pred             CCCCEEEEEEEEECCCCCCEECCCCCCEEEEEEE------EECCCC-------EEEEEEEHH-HHHHHHHHCCCCCEEEE
T ss_conf             8674599999971577503506899735999999------989989-------899999069-99987733432879999


Q ss_pred             EE
Q ss_conf             84
Q gi|254780183|r   81 EG   82 (159)
Q Consensus        81 ~G   82 (159)
T Consensus        74 s~   75 (104)
T cd04474          74 SK   75 (104)
T ss_pred             EC
T ss_conf             56