HHsearch alignment for GI: 254780183 and conserved domain: cd04489
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=95.71 E-value=0.13 Score=29.97 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=51.6
Q ss_pred EEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99996425886679869998699999983456420268845301124302110158987722110477159998413333
Q gi|254780183|r 8 VILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTR 87 (159)
Q Consensus 8 v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~ 87 (159)
T Consensus 2 vwV~GEIs~---~~~~~sGh~Y--f~Lk------D~~--------a~i~~v~~~~-~~~~~~~~~~~G~~V~v~g~~~~y 61 (78)
T cd04489 2 VWVEGEISN---LKRPSSGHLY--FTLK------DED--------ASIRCVMWRS-NARRLGFPLEEGMEVLVRGKVSFY 61 (78)
T ss_pred EEEEEEECC---CEECCCCEEE--EEEE------CCC--------EEEEEEEEHH-HHHHCCCCCCCCCEEEEEEEEEEE
T ss_conf 899999885---5828996399--9994------788--------1999999667-883279998899899999999999
Q ss_pred CCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 3204688376889999977698
Q gi|254780183|r 88 KWQDQSGNNRYTTEIIMRSMVM 109 (159)
Q Consensus 88 ~~~~kdG~~r~~~~V~a~~i~~ 109 (159)
T Consensus 62 ~---~~G----~~ql~v~~i~~ 76 (78)
T cd04489 62 E---PRG----GYQLIVEEIEP 76 (78)
T ss_pred C---CCC----EEEEEEEEEEE
T ss_conf 8---984----09999999997