HHsearch alignment for GI: 254780183 and conserved domain: cd04492
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.43 E-value=0.051 Score=32.38 Aligned_cols=74 Identities=12% Similarity=0.267 Sum_probs=53.5
Q ss_pred EECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 42588667986999869999998345642026884530112430211015898772211047715999841333332046
Q gi|254780183|r 13 NLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQ 92 (159)
Q Consensus 13 ~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~k 92 (159)
T Consensus 4 fli~~~~~~~tk~G~~Yl~l~L~--------------D~tG~I~ak~W~~-~~~~-~~~~~~g~~V~v~G~v~~y~--g- 64 (83)
T cd04492 4 FLIKSKELRTAKNGKPYLALTLQ--------------DKTGEIEAKLWDA-SEED-EEKFKPGDIVHVKGRVEEYR--G- 64 (83)
T ss_pred EEEEEHHHHCCCCCCCEEEEEEE--------------CCCCEEEEEECCC-CHHH-HHCCCCCCEEEEEEEEEEEC--C-
T ss_conf 99998010005799917899998--------------7887688888578-8678-83078999999999998889--9-
Q ss_pred CCCEEEEEEEEEEEEEECC
Q ss_conf 8837688999997769846
Q gi|254780183|r 93 SGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 93 dG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 65 ------~~Ql~I~~i~~~~ 77 (83)
T cd04492 65 ------RLQLKIQRIRLVT 77 (83)
T ss_pred ------CEEEEEEEEEECC
T ss_conf ------5108998968998