HHsearch alignment for GI: 254780183 and conserved domain: cd04496
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=99.94 E-value=2.6e-26 Score=176.99 Aligned_cols=100 Identities=42% Similarity=0.809 Sum_probs=93.5
Q ss_pred EEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99996425886679869998699999983456420268845301124302110158987722110477159998413333
Q gi|254780183|r 8 VILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTR 87 (159)
Q Consensus 8 v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~ 87 (159)
T Consensus 1 v~l~G~l~~dp~~~~~~~g~~~~~f~va~~~~~~~~~--~~~~~t~~~~v~~wg~-~A~~~~~~l~KG~~V~V~G~l~~~ 77 (100)
T cd04496 1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD--EEEEETDWIRVVAFGK-LAENAAKYLKKGDLVYVEGRLRTR 77 (100)
T ss_pred CEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCC--CCCCCCEEEEEEEECH-HHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 9999983889889997999889999999857440467--7213419999999970-898778753799889999998812
Q ss_pred CCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf 32046883768899999776984
Q gi|254780183|r 88 KWQDQSGNNRYTTEIIMRSMVML 110 (159)
Q Consensus 88 ~~~~kdG~~r~~~~V~a~~i~~l 110 (159)
T Consensus 78 ~~~~~~g~~~~~~~i~a~~i~~l 100 (100)
T cd04496 78 SWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEECCCCCEEEEEEEEEEEEEEC
T ss_conf 37999998999999999999949