HHsearch alignment for GI: 254780183 and conserved domain: pfam01336
>pfam01336 tRNA_anti OB-fold nucleic acid binding domain. This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Probab=95.93 E-value=0.056 Score=32.13 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=50.8
Q ss_pred EEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99996425886679869998699999983456420268845301124302110158987722110477159998413333
Q gi|254780183|r 8 VILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTR 87 (159)
Q Consensus 8 v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~ 87 (159)
T Consensus 1 v~v~G~V~~~~-----~~~~~~~~~~l~--------------D~tg~i~~~~~~~-~~~~~~~~l~~g~~v~v~G~v~~~ 60 (75)
T pfam01336 1 VTVAGRVTSVR-----RSGGKVAFLTLR--------------DGTGSIQVVLFKE-EAEKLAKKLKEGDVVLVTGKVKKR 60 (75)
T ss_pred CEEEEEEEEEE-----ECCCCEEEEEEE--------------ECCEEEEEEEEHH-HHHHHHHCCCCCCEEEEEEEEEEC
T ss_conf 99999999518-----879998999999--------------7993999999523-868886328989899999999997
Q ss_pred CCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 3204688376889999977698
Q gi|254780183|r 88 KWQDQSGNNRYTTEIIMRSMVM 109 (159)
Q Consensus 88 ~~~~kdG~~r~~~~V~a~~i~~ 109 (159)
T Consensus 61 ~----~~----~~~i~~~~i~~ 74 (75)
T pfam01336 61 P----GG----ELELVVEEIEV 74 (75)
T ss_pred C----CC----CEEEEEEEEEE
T ss_conf 4----99----89999989997