HHsearch alignment of GI: 254780183 and MMDB domain: 1v1q_A_
>1v1q_A (A:) Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli}
Probab=99.92 E-value=3.7e-25 Score=169.77 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=92.0
Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159)
Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159)
|| +|+|+|+|+|++|||+|+|++|.++++|+||+++.++ ..+.+++...|++|++||+ +|+.+++||+||++|+|
T Consensus 17 mm--~N~v~L~G~l~~dpelR~Tp~G~~v~~f~La~~s~~~--e~g~~r~~~~~i~vv~~G~-~Ae~~~~~l~KG~~V~V 91 (134)
T 1v1q_A 17 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV 91 (134)
T ss_dssp GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE
T ss_pred CE--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEE
T ss_conf 10--1089999997778645699999769999984112003--5655213579999999959-99999875288999999
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC
Q ss_conf 841333332046883768899999776984667776666
Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQG 119 (159)
Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~ 119 (159)
+|+|.+++|. +|+.+ +.|.|++|+||+++......
T Consensus 92 ~G~L~~~~~k--n~~~k--~vl~a~~iefLds~~~~aa~ 126 (134)
T 1v1q_A 92 QGFISCHKAK--NGLSK--MVLHAEQIELIDSVDKLAAA 126 (134)
T ss_dssp EEEEEEECTT--TTSCE--EEEEEEEEEETTSCSCCCC-
T ss_pred EEEEEEEECC--CCCCE--EEEEEEEEEECCCCCCCCCH
T ss_conf 9998860052--89967--99999899990178744411