HHsearch alignment of GI: 254780183 and MMDB domain: 3k8a_A_
>3k8a_A (A:) Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.92 E-value=9.8e-25 Score=167.25 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=90.0
Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159)
Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159)
|+.||+|+|+|||++||++|++++|.++++|+||+++.+++ .+++.+.++||+|++||+ +|+++ +|+||++|.|+
T Consensus 4 m~~~n~v~l~G~i~~dp~~r~t~~G~~~~~~~la~~~~~~~--~~~~~~~t~~~~v~~~g~-~Ae~~--~l~kG~~V~V~ 78 (103)
T 3k8a_A 4 MGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEE--NGQQCLVQLEIPARILGR-QAEEW--QYRQGDCATVE 78 (103)
T ss_dssp CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEHH-HHHHS--TTCTTCEEEEE
T ss_pred CCCCCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCCC--CCCCCEEEEEEEEEEEHH-HHHHH--HHCCCCEEEEE
T ss_conf 66534799999987887468999997699999987454415--887021579999999948-85666--44899999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf 4133333204688376889999977698466
Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159)
Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159)
|+|+.++|++++| +|.+++|++|++
T Consensus 79 G~l~~~~~~~~~~------~v~~~~i~~l~g 103 (103)
T 3k8a_A 79 GFLAQKSRRSLMP------MLRIQNIKEYKG 103 (103)
T ss_dssp EEEEESSSSCCCE------EEEEEEEEECCC
T ss_pred EEEEECCCCCCEE------EEEEEEEEECCC
T ss_conf 9937504668748------999989998169