Query gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 107 out of 2718 Neff 8.4 Searched_HMMs 33803 Date Mon May 23 07:10:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780183.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3eiv_A Single-stranded DNA-bi 100.0 2.1E-38 6.1E-43 248.7 10.9 112 2-114 1-113 (199) 2 >1x3e_A Single-strand binding 100.0 6.8E-38 2E-42 245.6 13.0 157 2-159 1-165 (165) 3 >1eqq_A Single stranded DNA bi 100.0 1.3E-37 3.8E-42 243.9 5.9 116 2-118 3-118 (178) 4 >3lgj_A Single-stranded DNA-bi 100.0 3.4E-36 1E-40 235.5 8.7 151 1-159 19-169 (169) 5 >1z9f_A Single-strand binding 100.0 1.1E-34 3.2E-39 226.5 11.5 141 2-159 13-153 (153) 6 >1se8_A Single-strand binding 100.0 6.9E-34 2E-38 221.7 12.7 112 3-117 127-238 (301) 7 >1qvc_A Single stranded DNA bi 100.0 1.5E-33 4.3E-38 219.8 14.0 122 2-124 2-123 (145) 8 >2fxq_A Single-strand binding 100.0 1.9E-32 5.7E-37 213.1 11.6 115 1-118 1-115 (264) 9 >2vw9_A Single-stranded DNA bi 100.0 1.8E-31 5.2E-36 207.4 13.7 112 5-118 2-113 (134) 10 >3ull_A DNA binding protein; D 100.0 1E-31 3E-36 208.8 10.5 116 1-116 10-130 (132) 11 >1se8_A Single-strand binding 100.0 2.4E-30 7E-35 200.7 11.1 112 1-114 1-113 (301) 12 >3koj_A Uncharacterized protei 99.9 2.5E-26 7.4E-31 176.7 10.0 101 1-108 6-107 (108) 13 >1txy_A Primosomal replication 99.9 4.7E-26 1.4E-30 175.1 8.7 102 5-113 2-103 (104) 14 >3fhw_A Primosomal replication 99.9 2.4E-25 7.1E-30 170.9 10.8 108 5-122 1-108 (115) 15 >1v1q_A Primosomal replication 99.9 3.7E-25 1.1E-29 169.8 11.0 110 1-119 17-126 (134) 16 >3k8a_A Putative primosomal re 99.9 9.8E-25 2.9E-29 167.2 10.6 100 2-112 4-103 (103) 17 >3en2_A Probable primosomal re 99.9 6.5E-25 1.9E-29 168.3 9.4 99 4-107 1-99 (101) 18 >2fxq_A Single-strand binding 99.7 1.3E-16 3.8E-21 118.9 12.6 133 9-159 132-264 (264) 19 >3f2b_A DNA-directed DNA polym 97.7 0.00088 2.6E-08 42.5 11.4 88 3-113 15-104 (110) 20 >2hpi_A DNA polymerase III alp 96.2 0.013 3.8E-07 35.6 5.7 81 6-112 20-100 (105) 21 >1gm5_A RECG; helicase, replic 94.6 0.075 2.2E-06 31.0 5.3 68 6-90 7-74 (89) 22 >1xjv_A Protection of telomere 93.7 0.19 5.7E-06 28.5 6.0 73 3-91 13-86 (145) 23 >1l0w_A Aspartyl-tRNA syntheta 92.2 0.84 2.5E-05 24.7 7.4 86 7-114 18-104 (113) 24 >3dm3_A Replication factor A; 91.0 1.1 3.3E-05 24.0 7.0 64 6-85 15-81 (105) 25 >1eov_A ASPRS, aspartyl-tRNA s 89.0 1.6 4.8E-05 23.0 10.8 87 7-114 38-131 (136) 26 >3i7f_A Aspartyl-tRNA syntheta 87.8 2 5.9E-05 22.5 9.0 85 7-114 64-154 (161) 27 >2kbn_A Conserved protein; nuc 87.2 1.8 5.4E-05 22.7 5.8 62 3-85 13-74 (109) 28 >3ebe_A Protein MCM10 homolog; 87.0 0.71 2.1E-05 25.2 3.6 70 6-88 57-126 (149) 29 >1c0a_A Aspartyl tRNA syntheta 86.9 2.2 6.5E-05 22.2 8.6 88 6-114 16-106 (111) 30 >1jmc_A Protein (replication p 86.2 2.1 6.2E-05 22.4 5.7 66 4-84 17-85 (127) 31 >2wkd_A ORF34P2; SSB, engineer 85.0 1.1 3.4E-05 23.9 3.8 69 16-104 11-82 (119) 32 >2k75_A Uncharacterized protei 84.5 2.9 8.6E-05 21.5 5.9 67 3-90 11-77 (106) 33 >2k50_A Replication factor A r 84.3 3 8.8E-05 21.5 7.6 70 5-90 16-89 (115) 34 >2pi2_A Replication protein A 83.8 2.2 6.5E-05 22.3 4.9 64 5-88 71-136 (270) 35 >1wyd_A Hypothetical aspartyl- 83.2 3.3 9.8E-05 21.2 7.8 80 7-114 18-99 (104) 36 >3kf6_A Protein STN1; OB fold, 81.8 3.7 0.00011 20.9 7.6 79 5-112 47-128 (159) 37 >1b8a_A Protein (aspartyl-tRNA 79.8 4.4 0.00013 20.5 8.0 81 6-114 17-102 (108) 38 >3bju_A Lysyl-tRNA synthetase; 78.8 4.7 0.00014 20.3 8.7 83 6-115 27-114 (127) 39 >1x54_A Asparaginyl-tRNA synth 76.9 5.4 0.00016 19.9 8.3 81 7-114 18-102 (108) 40 >1ynx_A Replication factor-A p 68.8 8.4 0.00025 18.8 6.0 68 4-86 13-83 (114) 41 >2hql_A Hypothetical protein M 68.6 8.5 0.00025 18.8 6.9 89 5-107 8-96 (110) 42 >3e9h_A Lysyl-tRNA synthetase; 67.5 9 0.00027 18.6 10.2 80 6-114 57-140 (145) 43 >2vl6_A SSO MCM N-TER, minichr 67.2 9.1 0.00027 18.6 4.9 53 54-111 101-155 (157) 44 >3e0e_A Replication protein A; 66.5 9.4 0.00028 18.5 6.7 66 5-88 11-80 (97) 45 >3f9v_A Minichromosome mainten 62.9 11 0.00032 18.1 4.1 57 54-115 101-159 (176) 46 >1n9w_A Aspartyl-tRNA syntheta 62.0 11 0.00034 18.0 8.6 76 7-115 15-90 (104) 47 >1ltl_A DNA replication initia 58.9 11 0.00034 18.0 3.5 97 6-113 9-108 (137) 48 >1o7i_A SSB, SSO2364, single s 55.4 15 0.00044 17.3 5.8 63 3-84 10-75 (119) 49 >3kdf_D Replication protein A 55.2 15 0.00044 17.3 5.1 78 5-111 31-110 (132) 50 >1e1o_A Lysyl-tRNA synthetase; 53.0 16 0.00048 17.1 9.2 79 7-115 29-113 (121) 51 >1jb7_A Telomere-binding prote 36.8 29 0.00087 15.6 5.4 82 7-92 51-133 (180) 52 >2ayi_A Aminopeptidase T; meta 34.3 32 0.00095 15.3 2.8 29 62-90 9-40 (148) 53 >1j3a_A 50S ribosomal protein 32.8 25 0.00073 16.0 1.9 24 59-83 10-33 (142) 54 >1zjc_A Aminopeptidase AMPS; m 32.3 35 0.001 15.1 2.6 27 62-88 12-41 (153) 55 >1wjj_A Hypothetical protein F 31.9 35 0.001 15.1 4.8 68 3-90 24-104 (145) 56 >1vq8_J 50S ribosomal protein 30.2 29 0.00086 15.6 1.9 24 59-83 18-41 (145) 57 >3jyw_M 60S ribosomal protein 28.0 23 0.00067 16.2 1.0 23 59-82 9-31 (141) 58 >1sq2_N Novel antigen receptor 20.6 58 0.0017 13.8 2.8 12 70-81 102-113 (113) 59 >3kf8_A Protein STN1; OB fold; 20.4 58 0.0017 13.8 5.8 92 5-114 44-145 (179) No 1 >>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} (A:) Probab=100.00 E-value=2.1e-38 Score=248.69 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=106.7 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8778379999642588667986999869999998345642026884530-112430211015898772211047715999 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |++||+|+|+|||++|||||++++|..+++|+||++++|+++.+++|.+ .|.||.|++|+ ++|+++++||+||++|+| T Consensus 1 M~~mn~v~l~G~l~~dPe~~~~~~g~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~~-~~Ae~~~~~l~KG~~V~V 79 (199) T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWR-QAAENVAESLQRGMRVIV 79 (199) T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEET-HHHHHHHHHCCTTCEEEE T ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCEECCCCCCCCCCCEEEEEEECC-HHHHHHHHHCCCCCEEEE T ss_conf 9987879999880779989888999989999999748702056783325543465666230-679999974689999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 8413333320468837688999997769846677 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) +|+|+.++|++++|++++.++|+|++|.++..+. T Consensus 80 ~G~l~~~~~~d~dG~~~~~~~i~a~~i~~~~~~~ 113 (199) T 3eiv_A 80 QGRLKQRSYEDREGVKRTVYELDVDEVGASLRSA 113 (199) T ss_dssp EEEEEEEC--------CCEEEEEEEEEEEECSSE T ss_pred EEEEEECEEECCCCCEEEEEEEEEEECCCCCCCC T ss_conf 9898825069999989769999952526312323 No 2 >>1x3e_A Single-strand binding protein; oligonucleotide binding fold, DNA-binding protein, DNA binding protein; 2.15A {Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A (A:) Probab=100.00 E-value=6.8e-38 Score=245.61 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=124.5 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8778379999642588667986999869999998345642026884530-112430211015898772211047715999 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |++||+|+|+|||++|||+|++++|..+++|+||++++|+++.++.|.+ .|.||.|++||+ +|+++++||+||++|+| T Consensus 1 M~~mN~v~l~G~l~~dp~~r~~~~G~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~g~-~A~~~~~~l~KG~~V~V 79 (165) T 1x3e_A 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWRE-AAENVAESLTRGSRVIV 79 (165) T ss_dssp --CCCEEEEEEEESSCCEEEECTTSCEEEEEEEECCCBC------CCCBCCCCEEEEEEETH-HHHHHHHHCCTTCEEEE T ss_pred CCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHH-HHHHHHHHHCCCCEEEE T ss_conf 99757899999837798799879998899999997234444455553354217887663637-99999997347978999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 8413333320468837688999997769846677766667777777766-------777655666666765445677877 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSN-------NLKENVVGNRYSSPREESVFSDEL 153 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 153 (159) +|+|++++|++++|++++.++|+|++|.++..+................ .............+.......+.. T Consensus 80 ~G~l~~~~~~~~dG~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165) T 1x3e_A 80 TGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKASRSGGGGGGFGSGGGGSRQSEPKDDPWGSAPASGSFSGA 159 (165) T ss_dssp EEEEEEEEEECCC--EEEEEEEEEEEEEECSSSEEEEEEEC--------------------------------------- T ss_pred EEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 87756065277999889989999665324422155665677776310003577788767778878876678878887777 Q ss_pred CCCCCC Q ss_conf 455798 Q gi|254780183|r 154 DDEIPF 159 (159) Q Consensus 154 dDdiPF 159 (159) |||||| T Consensus 160 dddiPF 165 (165) T 1x3e_A 160 DDEPPF 165 (165) T ss_dssp ------ T ss_pred CCCCCC T ss_conf 789998 No 3 >>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} (A:) Probab=100.00 E-value=1.3e-37 Score=243.95 Aligned_cols=116 Identities=49% Similarity=0.879 Sum_probs=108.4 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) |.+||+|+|+|||++|||+|++++|+.+++|+||++++|+++.++++++.|.||+|++|| ++|+++++||+||++|+|+ T Consensus 3 ~~~mn~v~l~Grl~~dPe~~~~~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~~g-~~A~~~~~~l~KG~~V~V~ 81 (178) T 1eqq_A 3 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFG-KLAEVASEYLRKGSQVYIE 81 (178) T ss_dssp CCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECH-HHHHHHHHHCCTTCEEEEC T ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEECC-HHHHHHHHHHCCCCEEEEE T ss_conf 676758999999687987988899998999999973652316788310001488636454-8999999872589989999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 4133333204688376889999977698466777666 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ 118 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~ 118 (159) |+|+.++|++++|++++.++|+|++|.+|..+..... T Consensus 82 G~l~~~~~~~~dG~~~~~~~i~a~~i~~l~~~~~~~~ 118 (178) T 1eqq_A 82 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178) T ss_dssp CEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC--- T ss_pred EEEEECCEECCCCCEEEEEEEEEEECCCEEECCCCCC T ss_conf 8976041499999889999999974473588557565 No 4 >>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} (A:) Probab=100.00 E-value=3.4e-36 Score=235.45 Aligned_cols=151 Identities=42% Similarity=0.684 Sum_probs=123.7 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |...||+|+|+|||++|||+|++++|+++++|+||++++|+++.++++++.+.||.|++|+.++|+++++||+||++|+| T Consensus 19 m~~~mN~v~l~G~l~~dpe~r~t~~G~~~~~f~la~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~l~KG~~V~v 98 (169) T 3lgj_A 19 PGSMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYI 98 (169) T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEE T ss_pred CCCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCEECCCCCEECCCCCEEEEEEECCHHHHHHHHHCCCCCEEEE T ss_conf 65601589999991689779987999879999999833331367763524321899986350689999986689998999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 8413333320468837688999997769846677766667777777766777655666666765445677877455798 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdiPF 159 (159) +|+|+.++|+++||++++.++|+|++|.+|..+............... ....+.+.......+..|||||| T Consensus 99 ~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~dddiPF 169 (169) T 3lgj_A 99 EGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQSASSSSVT--------SQSYAIASGADDYGISAHDSMPF 169 (169) T ss_dssp EEEEEEECC--------CEEEEEECTTCCEEEEECC------------------------------------------- T ss_pred EEEEECCEEECCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999853417999997899999999823571788767776666788878--------88877677887788887789998 No 5 >>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} (A:) Probab=100.00 E-value=1.1e-34 Score=226.54 Aligned_cols=141 Identities=26% Similarity=0.512 Sum_probs=119.0 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) |+.||+|+|+|||++|||+|++++|..+++|+||++++|+++.+ .+...++||+|++||+ +|+++++||+||++|+|+ T Consensus 13 m~~mn~v~l~G~l~~dpei~~~~~g~~~~~~~la~~~~~~~~~~-~~~~~t~~~~v~~~g~-~A~~~~~~l~KG~~V~V~ 90 (153) T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAP-DDAQTTDFFRIVTFGR-LAEFARTYLTKGRLVLVE 90 (153) T ss_dssp CSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC------------CEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE T ss_pred HHHCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCCCC-CCCEEEEEEEEEECCC-CCHHHHHHCCCCCEEEEE T ss_conf 50478899999937798899889998899998877042014677-4210101244453000-000111201588489999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 413333320468837688999997769846677766667777777766777655666666765445677877455798 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdiPF 159 (159) |+|+.++|++++|++++.++|+|++|.+|..+..........+.. .+....+..+..|||||| T Consensus 91 G~l~~~~~~~~~G~~~~~~~i~a~~i~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~dddlPF 153 (153) T 1z9f_A 91 GEMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAETVSETEEELE---------------IPEEDFSSDTFSEDEPPF 153 (153) T ss_dssp EEEEEEC-------CCCEEEEEEEEEEECC------------------------------------------------ T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCC T ss_conf 966643789999989999999994899876777666566677778---------------886666788877788998 No 6 >>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} (A:) Probab=100.00 E-value=6.9e-34 Score=221.73 Aligned_cols=112 Identities=29% Similarity=0.557 Sum_probs=101.4 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77837999964258866798699986999999834564202688453011243021101589877221104771599984 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ...|.++++|||++|||+|++++|..+++|+||++++++|+.+ ++.+.|+||+|+|||+ +|+++. +++||++|+|+| T Consensus 127 ~~~n~~~~~G~l~~dP~~r~~~~g~~~~~f~iA~~~~~~~~~~-~~~~~t~~~~v~~wg~-~A~~~~-~~~KG~~V~V~G 203 (301) T 1se8_A 127 GAXNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQG-QRQEKVHYIDATLWRD-LAENXK-ELRKGDPVXIXG 203 (301) T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTS-CEEEEEEEEEEEEETH-HHHHHT-TCCTTCEEEEEE T ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCCC-CEEEEEEEEEEEEECE-EEEEEE-EECCCCEEEEEE T ss_conf 4751899998869986799999998899999998898798999-7874318999999763-468751-133894899998 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCC Q ss_conf 13333320468837688999997769846677766 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSL 117 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~ 117 (159) ||++++|++++|++|+.++|+|++|.+|..+.... T Consensus 204 rl~~~~~~~~dG~~~~~~~i~a~~i~~~~~~~~~~ 238 (301) T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALARGAGNA 238 (301) T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC----- T ss_pred EEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCC T ss_conf 73333657589968999999999999865777776 No 7 >>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} (A:) Probab=100.00 E-value=1.5e-33 Score=219.80 Aligned_cols=122 Identities=48% Similarity=0.850 Sum_probs=111.6 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..+||+|+|+|||++||++|++++|..+++|+||++++|+++.++++++.|+||.|++||+ +|+++++||+||++|+|+ T Consensus 2 ~~~mN~v~i~G~l~~dp~~~~~~~g~~~~~f~la~~~~~k~~~~~~~~~~t~~~~v~~~~~-~Ae~~~~~l~KG~~V~V~ 80 (145) T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE 80 (145) T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE T ss_pred CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCEECCCCCCCCCCCCEEEEEEECH-HHHHHHHHHHCCCEEEEE T ss_conf 8751399999988889889888999889999998332100256773021111677889751-567665551237789999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC Q ss_conf 4133333204688376889999977698466777666677777 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRS 124 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~ 124 (159) |+|+.++|++++|++|+.++|+|++|.+|..+........... T Consensus 81 G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~~~~~~~~~ 123 (145) T 1qvc_A 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAG 123 (145) T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCCSSSSS T ss_pred EEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCC T ss_conf 7888656198999989999999924787789857677788888 No 8 >>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A (A:) Probab=100.00 E-value=1.9e-32 Score=213.14 Aligned_cols=115 Identities=30% Similarity=0.553 Sum_probs=105.0 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |+.+||+|+|+|||++|||+|++++|.++++|+||++++++++. +.+.+.|+||+|++||+ +|+.+++||+||++|+| T Consensus 1 m~~~mn~v~l~G~l~~~~~~~~~~~g~~~~~~~la~~~~~~~~~-~~~~~~~~~~~v~~~~~-~A~~~~~~l~kG~~v~v 78 (264) T 2fxq_A 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDES-GQEREVPWYHRVRLLGR-QAEMWGDLLEKGQLIFV 78 (264) T ss_dssp --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETH-HHHHHTTTCCTTCEEEE T ss_pred CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEECCEEEEEEECHH-HHHHHHHHCCCCCEEEE T ss_conf 99865089999993679879997999889999999789779899-99985358999998478-87888871558978999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 84133333204688376889999977698466777666 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ 118 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~ 118 (159) +|+|+.++|+ ++|++++.++|+|++|.+|..+..... T Consensus 79 ~G~l~~~~~~-~~g~~~~~~~i~~~~i~~~~~~~~~~~ 115 (264) T 2fxq_A 79 EGRLEYRQWE-KDGEKKSEVQVRAEFIDPLEGRGRETL 115 (264) T ss_dssp EEEEEEC----------CCEEEEEEEEEECCCC----- T ss_pred EEEEECCCEE-ECCEEEEEEEEEEEEEEECCCCCCCCC T ss_conf 9898815877-199099999999999794257685321 No 9 >>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} (A:) Probab=99.97 E-value=1.8e-31 Score=207.43 Aligned_cols=112 Identities=31% Similarity=0.506 Sum_probs=103.7 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) ||+|+|+|||++||++|++++|..+++|+||++++++++. +++.+.++||+|++||+ +|+++++||+||++|+|+|+| T Consensus 2 mN~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~-~~~~~~t~~~~v~~~g~-~A~~~~~~l~KG~~V~V~G~l 79 (134) T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD-GTLGEEVCFIDARLFGR-TAEIANQYLSKGSSVLIEGRL 79 (134) T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS-SCEEEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEEEEE T ss_pred CEEEEEEEECCCCCEEEECCCCCEEEEEEEHHCCCCCCCC-CCEEEEEEEEEEEEEEE-HHHHHHHHHCCCEEEEEEEEE T ss_conf 5279999993769789998999889999902266532357-84124316887477300-233444642266299999864 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 3333204688376889999977698466777666 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ 118 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~ 118 (159) +.++|+++||++++.++|+|++|.+|..+..... T Consensus 80 ~~~~~~~k~G~~~~~~~i~a~~i~~l~~~~~~~~ 113 (134) T 2vw9_A 80 TYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQ 113 (134) T ss_dssp EEEEEECTTSCEEEEEEEEEEEEEECCCC----- T ss_pred EEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCC T ss_conf 0457876899689999999979997457777767 No 10 >>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} (A:) Probab=99.97 E-value=1e-31 Score=208.84 Aligned_cols=116 Identities=29% Similarity=0.598 Sum_probs=107.6 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCC-----EEECEEEECCCCCHHHHHHHHHHHCCCC Q ss_conf 98778379999642588667986999869999998345642026884-----5301124302110158987722110477 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNE-----RREKTEWHSVIVFSEELCRIVEQYLRKG 75 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~-----~~d~t~~~~v~~~g~~~Ae~~~~~l~KG 75 (159) |+.+||+|+|+|||++|||+|++++|.++++|+||++++|+++.+.. +.+.|+||.|++||+++|+++++||+|| T Consensus 10 ~~~~mN~v~l~G~l~~dpel~~~~~g~~~~~f~ia~~~~~~~~~g~~~~~~~~~~~t~~~~vv~~g~~~a~~~~~~l~kG 89 (132) T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132) T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT T ss_pred ECCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEEEHHHHHHHHHCCCC T ss_conf 00782399999988879889986999879999998445301666641125400443409864547405654346524478 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC Q ss_conf 15999841333332046883768899999776984667776 Q gi|254780183|r 76 SKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS 116 (159) Q Consensus 76 ~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~ 116 (159) ++|+|+|+|++++|+++||++++.++|+|++|.+|+.+... T Consensus 90 ~~v~V~G~l~~~~~~~~dG~~~~~~~i~a~~i~~l~~~~~~ 130 (132) T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132) T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------ T ss_pred CEEEEEEEECCCEEECCCCCEEEEEEEEEEEEEECCCCCCC T ss_conf 89999938823110989998999999999699988898776 No 11 >>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} (A:) Probab=99.97 E-value=2.4e-30 Score=200.70 Aligned_cols=112 Identities=25% Similarity=0.422 Sum_probs=101.7 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHH-HHHCCCCCEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772-21104771599 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIV-EQYLRKGSKVY 79 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~-~~~l~KG~~V~ 79 (159) .|.++|+|+|+|||++|||+|++++|..+++|+||++++|+++.+ ++.+.|+||+|++|++ +|+++ .+||+||++|+ T Consensus 1 ~~~~~N~v~l~G~l~~dpe~~~~~~g~~~~~f~la~~~~~~~~~~-~~~~~t~~~~v~~~~~-~a~~~~~~~l~kG~~v~ 78 (301) T 1se8_A 1 XARGXNHVYLIGALARDPELRYTGNGXAVFEATVAGEDRVIGNDG-RERNLPWYHRVSILGK-PAEWQAERNLKGGDAVV 78 (301) T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEE T ss_pred CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCCC-CEEECCEEEEEEEECH-HHHHHHHHHCCCCCEEE T ss_conf 987514999999936698899889998899999997895587999-8973347999999887-99999987256687899 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 98413333320468837688999997769846677 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) |+|+|++++|++++|++++.++|+|++|.++.... T Consensus 79 V~G~l~~~~~~~~dG~~~~~~~i~a~~i~~~~~~~ 113 (301) T 1se8_A 79 VEGTLEYRQWEAPEGGKRSAVNVKALRXEQLGTQP 113 (301) T ss_dssp EEEEEEEEEEC-----CEEEEEEEEEEEEECSSCC T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCC T ss_conf 99997851239899988999999998999815865 No 12 >>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} (A:) Probab=99.94 E-value=2.5e-26 Score=176.73 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=92.9 Q ss_pred CC-CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 98-77837999964258866798699986999999834564202688453011243021101589877221104771599 Q gi|254780183|r 1 MV-ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 1 mm-~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) || .++|+|+|+|||++||++|++++|..++.|++++++++. +++.++||+|++||+ +|+++++||+||++|+ T Consensus 6 ~~~~~~N~v~l~G~l~~dp~~~~t~~g~~~~~~~~~~~~~~~------~~~~~~~i~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (108) T 3koj_A 6 HHHSHXNSCILQATVVEAPQLRYAQDNQTPVAEXVVQFPGLS------SKDAPARLKVVGWGA-VAQELQDRCRLNDEVV 78 (108) T ss_dssp -CCSSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----------CCEEEEEEEETH-HHHHHHHHCCTTCEEE T ss_pred CCHHHCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCC------CCCCCEEEEEEEEHH-HHHHHHHHCCCCCEEE T ss_conf 554228999999998779768882899879999999968984------578976999999789-9999998608999999 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEE Q ss_conf 98413333320468837688999997769 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMV 108 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~ 108 (159) |+|+|+.++|+++||++++.++|+|++|. T Consensus 79 V~G~l~~~~~~~~dG~~~~~~~i~a~~i~ 107 (108) T 3koj_A 79 LEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108) T ss_dssp EEEEEEEEC--------CCEEEEEEEEEE T ss_pred EEEEEECEEEECCCCCEEEEEEEEEEECC T ss_conf 99998780789999989999999999716 No 13 >>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} (A:) Probab=99.93 E-value=4.7e-26 Score=175.08 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=93.5 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) -|+|+|+|||++||++|++++|.++++|+||++++|+++. ++.+.++|+.|++|++ +|+++++||+||++|+|+|+| T Consensus 2 tN~v~l~G~l~~dp~~r~t~~g~~~~~f~la~~~~~~~~~--~~~~~~~~~~v~~~~~-~A~~~~~~l~kG~~V~V~G~l 78 (104) T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAG--FHRQAWCQXPVIVSGH-ENQAITHSITVGSRITVQGFI 78 (104) T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETT--EEEEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEEEEE T ss_pred CEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEECC--CEEEEEEEEEEEEEHH-HHHHHHHHCCCCCEEEEEEEE T ss_conf 0399999996778747895899669999998720797166--6088999999999909-989988754799999999998 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 33332046883768899999776984667 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) ++++|++++|+.+ |+|+.|+||+++ T Consensus 79 ~~~~~~dkdg~~~----~~~~~i~~l~~k 103 (104) T 1txy_A 79 SCHKAKNGLSKXV----LHAEQIELIDSG 103 (104) T ss_dssp EC--------CCE----EEEEEEEEC--- T ss_pred EEECCCCCCCEEE----EEEEEEEEECCC T ss_conf 8722628996299----999999995179 No 14 >>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A (A:) Probab=99.93 E-value=2.4e-25 Score=170.88 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=94.1 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) .|+|+|+|||++||++|++++|.++++|+||+++++++..+ +.+.|+||+|++||+ +|+++ .+|+||++|+|+|+| T Consensus 1 ~N~v~l~G~i~~dp~~~~t~~G~~~~~f~la~~~~~~~~~~--~~~~t~~~~v~~~g~-~A~~~-~~l~kG~~V~V~G~l 76 (115) T 3fhw_A 1 XNTLELSARVLECGAXRHTPAGLPALELLLVHESEVVEAGH--PRRVELTISAVALGD-LALLL-ADTPLGTEXQVQGFL 76 (115) T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEEEE T ss_pred CCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEECCCC--CCCEEEEEEEEEEHH-HHHHH-HHCCCCCEEEEEEEE T ss_conf 97899999987686388989997789999993201204887--353449999999948-82320-413799999999996 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC Q ss_conf 33332046883768899999776984667776666777 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ 122 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~ 122 (159) ..++|++++| +|.|+.|+||+++......... T Consensus 77 ~~~~~~~~~g------~i~~~~i~~l~~~~~~~~~~~~ 108 (115) T 3fhw_A 77 APARKDSVKV------KLHLQQARRIAGSXGRDPLVGL 108 (115) T ss_dssp EESSTTCSSE------EEEEEEEEECCCSCCC------ T ss_pred CCCCCCCCCE------EEEEEEEEEECCCCCCCCCCCC T ss_conf 5266889836------9998999992688899987532 No 15 >>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} (A:) Probab=99.92 E-value=3.7e-25 Score=169.77 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=92.0 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) || +|+|+|+|+|++|||+|+|++|.++++|+||+++.++ ..+.+++...|++|++||+ +|+.+++||+||++|+| T Consensus 17 mm--~N~v~L~G~l~~dpelR~Tp~G~~v~~f~La~~s~~~--e~g~~r~~~~~i~vv~~G~-~Ae~~~~~l~KG~~V~V 91 (134) T 1v1q_A 17 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV 91 (134) T ss_dssp GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE T ss_pred CE--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEE T ss_conf 10--1089999997778645699999769999984112003--5655213579999999959-99999875288999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC Q ss_conf 841333332046883768899999776984667776666 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQG 119 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~ 119 (159) +|+|.+++|. +|+.+ +.|.|++|+||+++...... T Consensus 92 ~G~L~~~~~k--n~~~k--~vl~a~~iefLds~~~~aa~ 126 (134) T 1v1q_A 92 QGFISCHKAK--NGLSK--MVLHAEQIELIDSVDKLAAA 126 (134) T ss_dssp EEEEEEECTT--TTSCE--EEEEEEEEEETTSCSCCCC- T ss_pred EEEEEEEECC--CCCCE--EEEEEEEEEECCCCCCCCCH T ss_conf 9998860052--89967--99999899990178744411 No 16 >>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} (A:) Probab=99.92 E-value=9.8e-25 Score=167.25 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=90.0 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) |+.||+|+|+|||++||++|++++|.++++|+||+++.+++ .+++.+.++||+|++||+ +|+++ +|+||++|.|+ T Consensus 4 m~~~n~v~l~G~i~~dp~~r~t~~G~~~~~~~la~~~~~~~--~~~~~~~t~~~~v~~~g~-~Ae~~--~l~kG~~V~V~ 78 (103) T 3k8a_A 4 MGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEE--NGQQCLVQLEIPARILGR-QAEEW--QYRQGDCATVE 78 (103) T ss_dssp CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEHH-HHHHS--TTCTTCEEEEE T ss_pred CCCCCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCCC--CCCCCEEEEEEEEEEEHH-HHHHH--HHCCCCEEEEE T ss_conf 66534799999987887468999997699999987454415--887021579999999948-85666--44899999999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 4133333204688376889999977698466 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) |+|+.++|++++| +|.+++|++|++ T Consensus 79 G~l~~~~~~~~~~------~v~~~~i~~l~g 103 (103) T 3k8a_A 79 GFLAQKSRRSLMP------MLRIQNIKEYKG 103 (103) T ss_dssp EEEEESSSSCCCE------EEEEEEEEECCC T ss_pred EEEEECCCCCCEE------EEEEEEEEECCC T ss_conf 9937504668748------999989998169 No 17 >>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} (A:) Probab=99.92 E-value=6.5e-25 Score=168.32 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=88.1 Q ss_pred CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 78379999642588667986999869999998345642026884530112430211015898772211047715999841 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Gr 83 (159) +||+|+|+|||++|||+|++++|.++++|+||+++++++ .+++++.+.||+|++||+ +|+++ ++|+||++|+|+|+ T Consensus 1 ~mN~v~l~G~i~~dp~~r~t~~g~~v~~~~la~~~~~~~--~~~~~~~~~~~~v~~~g~-~Ae~~-~~l~kG~~V~V~G~ 76 (101) T 3en2_A 1 AINRLQLVATLVEREVXRYTPAGVPIVNCLLSYSGQAXE--AQAARQVEFSIEALGAGK-XASVL-DRIAPGTVLECVGF 76 (101) T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEEC--C--EEEEEEEEEEEEETH-HHHHH-TTSCTTCEEEEEEE T ss_pred CCEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEC--CCCEEEEEEEEEEEEECH-HHHHH-HHCCCCCEEEEEEE T ss_conf 920999999988787458978873699999997457840--553031146540999928-96655-63189999999999 Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEE Q ss_conf 333332046883768899999776 Q gi|254780183|r 84 LQTRKWQDQSGNNRYTTEIIMRSM 107 (159) Q Consensus 84 l~~~~~~~kdG~~r~~~~V~a~~i 107 (159) |+.++|++++|+++ ..+|+++.+ T Consensus 77 l~~~~~~~~~g~~~-~~~i~a~~v 99 (101) T 3en2_A 77 LARKHRSSKALVFH-ISGLEHHHH 99 (101) T ss_dssp EEECC----CEEEE-EEEEEEC-- T ss_pred EECCCCCCCCEEEE-EEEEEECCC T ss_conf 82578658836999-998553245 No 18 >>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A (A:) Probab=99.72 E-value=1.3e-16 Score=118.93 Aligned_cols=133 Identities=26% Similarity=0.454 Sum_probs=88.4 Q ss_pred EEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC Q ss_conf 99964258866798699986999999834564202688453011243021101589877221104771599984133333 Q gi|254780183|r 9 ILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRK 88 (159) Q Consensus 9 ~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~ 88 (159) ...++....+.............+.... .....+++.+.|+||+|++|++ .|+++ +||+||++|+|+|+|++++ T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~a~~~-~~~~kG~~v~v~G~~~~~~ 205 (264) T 2fxq_A 132 ILMGNLTRDPDLRYTPQGTAVVRLGLAV----NERRRGQEEERTHFLEVQAWRE-LAEWA-SELRKGDGLLVIGRLVNDS 205 (264) T ss_dssp EEEEEESSCCCCEECTTCCEEEEEEEEE----ECCC-------EEEEEEEEEHH-HHHHH-TTCCTTCEEEEEEEEEEEE T ss_pred CEEEEECCCEEEEECCCCCEEEEEEEEE----CCCCCCCCCCCEEEEEEEEEEH-HHHHH-HHCCCCCEEEEEEEEEEEE T ss_conf 1320412560577989998899896988----8874788766248999999715-53010-3310473899999877201 Q ss_pred CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 20468837688999997769846677766667777777766777655666666765445677877455798 Q gi|254780183|r 89 WQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159 (159) Q Consensus 89 ~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdiPF 159 (159) |+++||++|+.++|+|++|.+|+++............+.. ..+..........|||||| T Consensus 206 ~~~~~g~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ddd~PF 264 (264) T 2fxq_A 206 WTSSSGERRFQTRVEALRLERPTRGPAQAGGSRPPTVQTG------------GVDIDEGLEDFPPEEDLPF 264 (264) T ss_dssp EECTTSCEEEEEEEEEEEEECCCC----------------------------------------------- T ss_pred EECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCC T ss_conf 4889998899999999999966777655677889887778------------8887766567898889998 No 19 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:1-110) Probab=97.72 E-value=0.00088 Score=42.48 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=66.1 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCH--HHHHHHHHHHCCCCCEEEE Q ss_conf 77837999964258866798699986999999834564202688453011243021101--5898772211047715999 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFS--EELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g--~~~Ae~~~~~l~KG~~V~V 80 (159) ..+..|.+.|-|.. .+.+.+.+|+.++.|+|. |.+.-+.|++|. +.+.+ ....|++|+.|+| T Consensus 15 ~~~~~v~i~G~V~~-~~~~~tK~G~~~~~~~l~--------------D~tg~ie~~~F~~~~~~~~-~~~~l~~g~~v~v 78 (110) T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--------------DYTNSILVKMFSRDKEDAE-LMSGVKKGMWVKV 78 (110) T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--------------CSSCEEEEEEECSSHHHHH-HHHTCCTTCEEEE T ss_pred CCCCEEEEEEEEEE-EEEEEECCCCEEEEEEEE--------------ECCCCEEEEEECCCCCHHH-HHHHCCCCCEEEE T ss_conf 63676999999987-787870589889999998--------------2788689999558743288-9850679968999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 841333332046883768899999776984667 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) .|++..++|. | ...+.+..+..|+.. T Consensus 79 ~G~v~~~~~~---~----~~~l~v~~i~~i~~~ 104 (110) T 3f2b_A 79 RGSVQNDTFV---R----DLVIIANDLNEIAAN 104 (110) T ss_dssp EEEEEEETTT---T----EEEEEEEEEEEECCC T ss_pred EEEEECCCCC---C----CEEEEEEEEEECCCC T ss_conf 9988515777---7----427872123654775 No 20 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128) Probab=96.16 E-value=0.013 Score=35.56 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=58.6 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) ..|.+.|-|.. ...+.+.+|..++-++|. |.+.-+.|++|.+. -+.....|..|..|+|+|++. T Consensus 20 ~~v~i~G~v~~-~~~~~tk~G~~~a~~~le--------------D~tg~~e~~~F~~~-~~~~~~~l~~~~~v~i~g~v~ 83 (105) T 2hpi_A 20 PKVLLSGMVEE-VVRKPTRSGGMMARFTLS--------------DETGALEVVVFGRA-YEGVSPKLKEDIPLLVLAEVE 83 (105) T ss_dssp CEEEEEEEECC-C------------CEEEE--------------ETTEEEEEC--------------CTTCEEEEEEEEC T ss_pred CEEEEEEEEEE-EEECCCCCCCEEEEEEEE--------------ECCCCEEEEECHHH-HHHHHHHHCCCCEEEEEEEEE T ss_conf 78999999989-997017899979999999--------------89987899984799-999988851498799999999 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 333204688376889999977698466 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) .+. .+.+.++.+..|+. T Consensus 84 ~~~----------~~~l~v~~i~~l~~ 100 (105) T 2hpi_A 84 KGE----------ELRVLAQAVWTLEE 100 (105) T ss_dssp ---------------CEEEEEEEEHHH T ss_pred ECC----------CEEEEEEECCCHHH T ss_conf 789----------52899966365999 No 21 >>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:160-248) Probab=94.58 E-value=0.075 Score=30.97 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=46.1 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) .+|++.|.+.+-. ++.+.+ ...+.+.| .|.+.-+.|++|+.. -......|+.|+.|+|.|++. T Consensus 7 ~~v~i~g~V~~~~-~~~~~~-~~~~~~~l--------------~D~tg~i~~v~F~~~-~~~~~~~l~~g~~~~v~Gkv~ 69 (89) T 1gm5_A 7 EKVTTQGKIVSVE-TKKFQN-MNILTAVL--------------SDGLVHVPLKWFNQD-YLQTYLKQLTGKEVFVTGTVK 69 (89) T ss_dssp CCCEEEECCCCCE-EEECSS-CEEEEEEE--------------CCSSCCEEEEECSCC-TTHHHHHTTCSSCEEEEEEEC T ss_pred CEEEEEEEEEEEE-CCCCCC-CCEEEEEE--------------EECCEEEEEEEECCH-HHHHHHHHCCCCEEEEEEEEE T ss_conf 8799999999975-555799-71189999--------------989868999997987-999765035999899999998 Q ss_pred CCCCC Q ss_conf 33320 Q gi|254780183|r 86 TRKWQ 90 (159) Q Consensus 86 ~~~~~ 90 (159) .+.|. T Consensus 70 ~~~~~ 74 (89) T 1gm5_A 70 SNAYT 74 (89) T ss_dssp SCCTT T ss_pred ECCCC T ss_conf 76878 No 22 >>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} (A:1-145) Probab=93.74 E-value=0.19 Score=28.55 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=52.4 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 778379999642588667986999869999998345642026884530112-4302110158987722110477159998 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) .+...|-|+|.+..--+.+.+.....++.|+|+ |.+. -+.|++|++ .|+.+...+++|+.|.+. T Consensus 13 ~~~~~vdvigvV~~~~~~~~~~~~~~~~~l~i~--------------D~t~~~i~v~lw~~-~~~~l~~~~~~Gdvi~l~ 77 (145) T 1xjv_A 13 KGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIV--------------DQTNVKLTCLLFSG-NYEALPIIYKNGDIVRFH 77 (145) T ss_dssp CSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEE--------------CTTCCEEEEEEEES-SGGGSCCCCSTTCEEEEE T ss_pred CCCCEEEEEEEEEECCCCEECCCCEEEEEEEEE--------------CCCCCCEEEEEECC-CHHHCCCCCCCCCEEEEE T ss_conf 789878999999765797537997599999998--------------18999818999788-866699867779899997 Q ss_pred ECCCCCCCCC Q ss_conf 4133333204 Q gi|254780183|r 82 GSLQTRKWQD 91 (159) Q Consensus 82 Grl~~~~~~~ 91 (159) + ++.+.|.+ T Consensus 78 ~-~~v~~~~g 86 (145) T 1xjv_A 78 R-LKIQVYKK 86 (145) T ss_dssp E-EEEEEETT T ss_pred E-EEEEEECC T ss_conf 7-89999789 No 23 >>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} (A:1-113) Probab=92.17 E-value=0.84 Score=24.74 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=51.0 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH-HHHHHHHHHCCCCCEEEEEECCC Q ss_conf 79999642588667986999869999998345642026884530112430211015-89877221104771599984133 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE-ELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~-~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) .|+|.|+|.+ +|.. ....++.++ |.+..+.|++-.. ...+.+ ..|..|+.|.|+|.+. T Consensus 18 ~V~i~Gwv~~---~R~~-g~l~F~~lr----------------D~s~~iQ~v~~~~~~~~~~~-~~l~~~s~v~v~G~v~ 76 (113) T 1l0w_A 18 EVVLEGWVNR---RRDL-GGLIFLDLR----------------DREGLVQLVAHPASPAYATA-ERVRPEWVVRAKGLVR 76 (113) T ss_dssp EEEEEEEEEE---EEEC-SSCEEEEEE----------------ETTEEEEEEECTTSTTHHHH-TTCCTTCEEEEEEEEE T ss_pred EEEEEEEEEE---EECC-CCCEEEEEE----------------ECCEEEEEEEECCCHHHHHH-HCCCCCCEEEEEEEEE T ss_conf 8999999871---8848-982999999----------------69875999996884228999-5699987899999999 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 33320468837688999997769846677 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) .+.-. ........+||.++++.++.... T Consensus 77 ~~~~~-~~~~~~g~~Ei~~~~i~il~~a~ 104 (113) T 1l0w_A 77 LRPEP-NPRLATGRVEVELSALEVLAEAK 104 (113) T ss_dssp ECSSC-CTTSTTTTEEEEEEEEEEEECCC T ss_pred ECCCC-CCCCCCCEEEEEEEEEEEEECCC T ss_conf 27876-88678873999999999987456 No 24 >>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=91.04 E-value=1.1 Score=24.02 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=43.5 Q ss_pred CEEEEEEEECCCC--EEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE- Q ss_conf 3799996425886--6798699986999999834564202688453011243021101589877221104771599984- Q gi|254780183|r 6 NKVILIGNLGADP--DVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG- 82 (159) Q Consensus 6 N~v~l~G~l~~dP--elr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G- 82 (159) ..|.++|.+.+-- ....+.+|.....+.+-+ .|.|..+.+++|+.+ +. ..++.|+.|.+.| T Consensus 15 ~~v~v~g~V~~~~~~~~~~~~~g~~~~~~~~~i------------~D~Tg~i~~t~w~~~-~~---~~l~~g~~v~i~g~ 78 (105) T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIV------------RDETGSIRVTLWDNL-TD---IDVGRGDYVRVRGY 78 (105) T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEE------------EETTEEEEEEEEGGG-GG---SCCCTTCEEEEEEE T ss_pred CEEEEEEEEEECCCCEEEECCCCCEEEEEEEEE------------ECCCCEEEEEEECCC-CC---CCCCCCCEEEEEEE T ss_conf 858999999982587479926998889999999------------849981999996352-22---55899999999708 Q ss_pred CCC Q ss_conf 133 Q gi|254780183|r 83 SLQ 85 (159) Q Consensus 83 rl~ 85 (159) ++. T Consensus 79 ~v~ 81 (105) T 3dm3_A 79 IRE 81 (105) T ss_dssp EEE T ss_pred EEC T ss_conf 973 No 25 >>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} (A:1-136) Probab=89.04 E-value=1.6 Score=23.03 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=51.8 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCH-------HHHHHHHHHHCCCCCEEE Q ss_conf 7999964258866798699986999999834564202688453011243021101-------589877221104771599 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFS-------EELCRIVEQYLRKGSKVY 79 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g-------~~~Ae~~~~~l~KG~~V~ 79 (159) +|.|.|+|.+ +|. .|+.++ |-+-. |.+..+.|.+-. ..+.+.+ ..|..|+.|. T Consensus 38 ~V~v~Gri~~---~R~--~gk~~~-Fi~l~-------------d~~~~iQ~~~~~~~~~~~~~~~~~~~-~~l~~es~V~ 97 (136) T 1eov_A 38 EVLFRARVHN---TRQ--QGATLA-FLTLR-------------QQASLIQGLVKANKEGTISKNMVKWA-GSLNLESIVL 97 (136) T ss_dssp EEEEEEEEEE---EEE--CSSSEE-EEEEE-------------ETTEEEEEEEECCSSSSSCHHHHHHH-TTCCTTCEEE T ss_pred EEEEEEEEEC---HHH--CCCCCE-EEEEE-------------ECCEEEEEEEECCCCCCCCHHHHHHH-HCCCCCCEEE T ss_conf 8999898850---320--799758-99997-------------39878999996885563259999998-3799974899 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 98413333320468837688999997769846677 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) |+|.++...-. ....+.-.++|.++.+.+|.... T Consensus 98 v~G~v~~~~~~-~~~~~~g~lEl~v~~i~ils~a~ 131 (136) T 1eov_A 98 VRGIVKKVDEP-IKSATVQNLEIHITKIYTISETP 131 (136) T ss_dssp EEEEEEECSSC-CTTSSEEEEEEEEEEEEEEECCC T ss_pred EEEEEEECCCC-CCCCCCCEEEEEEEEEEEEECCC T ss_conf 99999926888-77888624899999999962587 No 26 >>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} (A:1-161) Probab=87.75 E-value=2 Score=22.52 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=51.0 Q ss_pred EEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH-----HHHHHHHHHCCCCCEEEE Q ss_conf 799996425886679869998-69999998345642026884530112430211015-----898772211047715999 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE-----ELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~-----~~Ae~~~~~l~KG~~V~V 80 (159) .|+|.|+|.+ +|. .|. .++.++ |.+..+.|++-.+ .+.+.+ +.|..|+.|.| T Consensus 64 ~V~v~GrV~~---~R~--~gk~~Fi~lr----------------D~~~~iQ~~~~~~~~~~~~~~~~~-~~l~~g~~v~v 121 (161) T 3i7f_A 64 TVTIRARVQA---VRG--KGNMVFLFLR----------------KGIYTCQALVMKSETISKEFVQFC-QKISAESICDI 121 (161) T ss_dssp EEEEEEEEEE---EEE--CSSEEEEEEE----------------ETTEEEEEEEECSSSSCHHHHHHH-HTCCTTEEEEE T ss_pred EEEEEEEEEE---EEC--CCCEEEEEEE----------------ECCCCEEEEEECCCCCCHHHHHHH-HCCCCCCEEEE T ss_conf 8999899885---875--8986999998----------------188048999978988869999999-63998538999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 8413333320468837688999997769846677 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) .|.+....=.. .....-.++|.++.|.+|.... T Consensus 122 ~G~v~~~~~~~-~~~~~g~~El~v~~i~ils~a~ 154 (161) T 3i7f_A 122 TGIVKAVEKPI-EKATQQDVEIHVTSIAVVSLAE 154 (161) T ss_dssp EEEEEECSSCC-TTSSSCSEEEEEEEEEEEECCC T ss_pred EEEEECCCCCC-CCCCCCCEEEEEEEEEEEECCC T ss_conf 99997468876-6689985799964899986468 No 27 >>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A (A:) Probab=87.22 E-value=1.8 Score=22.73 Aligned_cols=62 Identities=6% Similarity=0.002 Sum_probs=43.7 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77837999964258866798699986999999834564202688453011243021101589877221104771599984 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ..++.|.|.|++.. +....++..+.++.|+ |.|.=+++++|++++. ..++.|+.|.|.| T Consensus 13 ~~~~~v~i~~~V~~---~~~~~~~~~~~~~~l~--------------DetG~I~~t~W~d~~~----~~i~~G~~v~i~~ 71 (109) T 2kbn_A 13 ENGQWANLKAKVIQ---LWENTHESISQVGLLG--------------DETGIIKFTIWKNAEL----PLLEQGESYLLRS 71 (109) T ss_dssp STTCEEEEEEEEEE---EEECCCSSEEEEEEEE--------------CTTCCEEEEEEGGGCC----CCCCTTCEEEEEE T ss_pred CCCCCEEEEEEEEE---EECCCCCEEEEEEEEE--------------CCCCEEEEEEECCCCC----CCCCCCCEEEEEE T ss_conf 99982899999999---7479995299999998--------------8987599999677566----5467898999940 Q ss_pred CCC Q ss_conf 133 Q gi|254780183|r 83 SLQ 85 (159) Q Consensus 83 rl~ 85 (159) -.. T Consensus 72 ~~v 74 (109) T 2kbn_A 72 VVV 74 (109) T ss_dssp EEE T ss_pred EEE T ss_conf 799 No 28 >>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A (A:1-149) Probab=86.97 E-value=0.71 Score=25.17 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=48.0 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) ..|++.|-+.+ ...+.|.+|+.++-++|.- ..+. +.-+.|++|++.+ +...+.+..|..++|.|++. T Consensus 57 ~~v~v~giv~~-~~~~~tk~g~~~a~~~l~D------~~g~-----~~~ie~~iF~~~~-~~~~~~l~~~~~~~i~g~v~ 123 (149) T 3ebe_A 57 DWVTFGVIVKK-ITPQSSNNGKTFSIWRLND------LKDL-----DKYISLFLFGDVH-KEHWKTDQGTVIGLLNANPM 123 (149) T ss_dssp CEEEEEEEEEE-ECC-------CCEEEEEEC------SSST-----TCCEEEEECHHHH-HHHTTCCTTEEEEEESCEEC T ss_pred CEEEEEEEEEC-CCCEECCCCCCEEEEEEEC------CCCC-----CEEEEEEEECHHH-HHHCCCCCCEEEEEECCCCC T ss_conf 88999999965-7712736898479999760------6788-----6089999956687-86507588429999899017 Q ss_pred CCC Q ss_conf 333 Q gi|254780183|r 86 TRK 88 (159) Q Consensus 86 ~~~ 88 (159) .+. T Consensus 124 ~~~ 126 (149) T 3ebe_A 124 KPK 126 (149) T ss_dssp CCC T ss_pred CCC T ss_conf 788 No 29 >>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:1-111) Probab=86.92 E-value=2.2 Score=22.23 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=52.6 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH--HHHHHHHHCCCCCEEEEEEC Q ss_conf 3799996425886679869998699999983456420268845301124302110158--98772211047715999841 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE--LCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~--~Ae~~~~~l~KG~~V~V~Gr 83 (159) ..|+|.|+|-+ +|.. .+..++.+ .|.+.++.|++-... +.+.+ ..|..|+.|.|.|. T Consensus 16 ~~V~i~Gwv~~---~R~~-gk~~Fi~L----------------rD~~g~~Q~~~~~~~~~~~~~~-~~l~~~~~V~V~G~ 74 (111) T 1c0a_A 16 QQVTLCGWVNR---RRDL-GSLIFIDM----------------RDREGIVQVFFDPDRADALKLA-SELRNEFCIQVTGT 74 (111) T ss_dssp CEEEEEEEEEE---EEEC-SSCEEEEE----------------EETTEEEEEEECGGGHHHHHHH-TTCCTTCEEEEEEE T ss_pred CEEEEEEEEEE---EECC-CCCEEEEE----------------EECCEEEEEEEECCCCCHHHHH-HCCCCCCEEEEEEE T ss_conf 98999998640---8747-99499999----------------9498679999968743289998-53999768999989 Q ss_pred CCCCCCCCCC-CCEEEEEEEEEEEEEECCCCC Q ss_conf 3333320468-837688999997769846677 Q gi|254780183|r 84 LQTRKWQDQS-GNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 84 l~~~~~~~kd-G~~r~~~~V~a~~i~~l~~~~ 114 (159) +..+.=..++ -.+--..+|.|+++.+|.... T Consensus 75 v~~~~~~~~~~~~~~g~~Ei~v~~i~il~~a~ 106 (111) T 1c0a_A 75 VRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (111) T ss_dssp EEECCTTTCCTTSTTTTEEEEEEEEEEEECCC T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEEEEECCC T ss_conf 99268777677778874899986999950686 No 30 >>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} (A:1-127) Probab=86.19 E-value=2.1 Score=22.37 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=45.6 Q ss_pred CCCEEEEEEEECCCCEEEEC--CCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 78379999642588667986--9998-69999998345642026884530112430211015898772211047715999 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHT--QDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~--~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) .++.+.|.|||.+--++|.. .+|. .+..+-|+ |.+.=+.|++|++ +++.....|+.|+-+.+ T Consensus 17 ~~~~~~i~~RV~~~~~~~~~~~~~~~~~~~~~~l~--------------De~G~I~~~~~~~-~~~~f~~~l~~G~vy~I 81 (127) T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV--------------DESGEIRATAFNE-QVDKFFPLIEVNKVYYF 81 (127) T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE--------------CSSCEEEEEEEHH-HHHHHGGGCCTTCEEEE T ss_pred CCCCEEEEEEEEEECCCEEEECCCCCEEEEEEEEE--------------CCCCCEEEEEECC-CCHHCCCCEECCCEEEE T ss_conf 98868999999970354687779996189999998--------------7999699998044-30000111304739998 Q ss_pred EECC Q ss_conf 8413 Q gi|254780183|r 81 EGSL 84 (159) Q Consensus 81 ~Grl 84 (159) .+-- T Consensus 82 ~~~~ 85 (127) T 1jmc_A 82 SKGT 85 (127) T ss_dssp ECCE T ss_pred CCCE T ss_conf 8978 No 31 >>2wkd_A ORF34P2; SSB, engineered protein, lactococcal phage protein, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A (A:) Probab=84.95 E-value=1.1 Score=23.93 Aligned_cols=69 Identities=17% Similarity=0.377 Sum_probs=36.5 Q ss_pred CCCEEEE--CCCC-CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC Q ss_conf 8866798--6999-869999998345642026884530112430211015898772211047715999841333332046 Q gi|254780183|r 16 ADPDVRH--TQDG-RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQ 92 (159) Q Consensus 16 ~dPelr~--~~~g-~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~k 92 (159) .+-..|+ |+-| +.+.+|-+ |++..+. ..-|+---+| +..++.-|+.|.|.||++... T Consensus 11 Ne~NTrtV~TaKG~KkviS~~~-----~~~e~g~----~~k~~~g~~~-------lpd~v~~GDivTv~~ri~~ke---- 70 (119) T 2wkd_A 11 NEKNTRTVSTAKGDKKIISVPL-----FEKEKGS----NVKVAYGSAF-------XPDFIQXGDTVTVSGRVQAKE---- 70 (119) T ss_dssp CTTTEEEECCTTSCEEEEEEES-----SCCC--------CCCCEEEEE-------CCTTCCTTCEEEEEEEEEEC----- T ss_pred CCCCCEEEEECCCCEEEEEEEE-----ECCCCCC----CEEEEEEEEE-------CCCCCCCCCEEEEEEEEEEEC---- T ss_conf 3334358761358515897760-----2012487----2248998775-------355011374799851364302---- Q ss_pred CCCEEEEEEEEE Q ss_conf 883768899999 Q gi|254780183|r 93 SGNNRYTTEIIM 104 (159) Q Consensus 93 dG~~r~~~~V~a 104 (159) +|++.+.--+.+ T Consensus 71 ~G~~~~yN~~f~ 82 (119) T 2wkd_A 71 SGEYVNYNFVFP 82 (119) T ss_dssp -----CEEEEEE T ss_pred CCCEEEEEEECC T ss_conf 574485336503 No 32 >>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} (A:) Probab=84.52 E-value=2.9 Score=21.52 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=45.2 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77837999964258866798699986999999834564202688453011243021101589877221104771599984 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ..++.|.|+|.+..--+.+...+|.......+-. .|.|.=+++++|++. +.+|+.|.+.| T Consensus 11 ~~~~~v~v~g~V~~v~~~~~~~~g~~~~~~~~~i------------~D~Tg~I~~tlW~~~--------~~~Gdvv~i~~ 70 (106) T 2k75_A 11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYI------------EDDTARIRISSFGKQ--------LQDSDVVRIDN 70 (106) T ss_dssp TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEE------------ECSSCEEEEEEESSC--------CCTTEEEEEEE T ss_pred CCCCCEEEEEEEEEECCCEEEECCCEEEEEEEEE------------ECCCCEEEEEEECCC--------CCCCCEEEEEE T ss_conf 8998289999994962677986898689999999------------879978999995998--------78998999901 Q ss_pred CCCCCCCC Q ss_conf 13333320 Q gi|254780183|r 83 SLQTRKWQ 90 (159) Q Consensus 83 rl~~~~~~ 90 (159) -. .+.|. T Consensus 71 ~~-v~~~~ 77 (106) T 2k75_A 71 AR-VAQFN 77 (106) T ss_dssp EE-EEEET T ss_pred EE-EEEEC T ss_conf 89-97889 No 33 >>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} (A:) Probab=84.28 E-value=3 Score=21.46 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=47.0 Q ss_pred CCEEEEEEEECCCCEEEE--CCCCC--EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 837999964258866798--69998--69999998345642026884530112430211015898772211047715999 Q gi|254780183|r 5 LNKVILIGNLGADPDVRH--TQDGR--KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~--~~~g~--~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) -..|.++|.+..-.++|. +..|. .+..+.|+ |.|.=+++++|++ .++.+. .+..|+.|.+ T Consensus 16 ~~~v~v~g~V~~~~~~~~~~~k~g~~~~~~~~~i~--------------D~Tg~i~~~lw~~-~~~~~~-~l~~gd~v~i 79 (115) T 2k50_A 16 GAETPVTGRVMKISSPRTFTTRKGREGKLANVIIA--------------DDTGELRAVFWTE-NIKLLK-KFREGDVIRI 79 (115) T ss_dssp TCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE--------------ETTEEEEEEEETT-GGGGGG-TCCTTSEEEE T ss_pred CCEEEEEEEEEEECCCCEEECCCCCEEEEEEEEEE--------------CCCCEEEEEEECC-HHHHHC-CCCCCCEEEE T ss_conf 98678999999905870677279978699999997--------------6998799999863-157643-7999999999 Q ss_pred EECCCCCCCC Q ss_conf 8413333320 Q gi|254780183|r 81 EGSLQTRKWQ 90 (159) Q Consensus 81 ~Grl~~~~~~ 90 (159) .+--..+.|. T Consensus 80 ~~~~v~~~~~ 89 (115) T 2k50_A 80 KDVNIRGGFG 89 (115) T ss_dssp EEEEECCCSS T ss_pred EEEEEECCCC T ss_conf 6349900229 No 34 >>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} (A:) Probab=83.83 E-value=2.2 Score=22.26 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=39.2 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHHH-HHHHHHHHCCCCCEEEEEE Q ss_conf 83799996425886679869998699999983456420268845301124-302110158-9877221104771599984 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSEE-LCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~~-~Ae~~~~~l~KG~~V~V~G 82 (159) +++|.|+|.+.+ +...+ ..+.|+| .|.|-+ +.|..|-.. ........+..|+.|-|.| T Consensus 71 v~~V~ivG~V~~---i~~~~---~~~~~~i--------------dDgTG~~i~v~~~~~~~~~~~~~~~i~~g~yVrV~G 130 (270) T 2pi2_A 71 ISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG 130 (270) T ss_dssp ESEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEECC-------CCCCCTTCEEEEEE T ss_pred EEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEE T ss_conf 899999999968---98658---6689999--------------779998479999717998644465144798899999 Q ss_pred CCCCCC Q ss_conf 133333 Q gi|254780183|r 83 SLQTRK 88 (159) Q Consensus 83 rl~~~~ 88 (159) +|+.-. T Consensus 131 ~lk~f~ 136 (270) T 2pi2_A 131 HLRSFQ 136 (270) T ss_dssp EEEEET T ss_pred EECCCC T ss_conf 973239 No 35 >>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} (A:1-104) Probab=83.18 E-value=3.3 Score=21.19 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=49.8 Q ss_pred EEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH-HHHHHHHHCCCCCEEEEEECC Q ss_conf 799996425886679869998-699999983456420268845301124302110158-987722110477159998413 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE-LCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~-~Ae~~~~~l~KG~~V~V~Grl 84 (159) +|.+.|++-+ +|.. |+ .++ .| .|.+..+.|.+-.+. +.+.+ ..|..|+.|.|+|.+ T Consensus 18 ~V~v~Gwv~~---~R~~--g~~~Fi--~l--------------~D~sg~~Q~~~~~~~~~~~~~-~~l~~g~~V~v~G~v 75 (104) T 1wyd_A 18 EVIWAGWVHL---LRDL--GGKKFI--IL--------------RDKTGLGQVVVDKNSSAFGIS-QELTQESVIQVRGIV 75 (104) T ss_dssp EEEEEEEEEE---EEEE--TTEEEE--EE--------------EETTEEEEEEECTTSTTHHHH-TTCCTTCEEEEEEEE T ss_pred EEEEEEEEEE---EECC--CCEEEE--EE--------------EECCCCEEEEEECCCCCHHHH-HCCCCCEEEEEEEEE T ss_conf 8999998687---8758--980999--99--------------949806899994895328899-538996299999799 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 333320468837688999997769846677 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) +.+.- +.| ..|+.+++++++.... T Consensus 76 ~~~~~--~~~----~~El~v~~i~il~~~~ 99 (104) T 1wyd_A 76 KADKR--APR----GIELHAEEITLLSKAK 99 (104) T ss_dssp EECSS--SGG----GEEEEEEEEEEEECCC T ss_pred ECCCC--CCC----CEEECCCCCCCCHHCC T ss_conf 77888--876----5342123222110000 No 36 >>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} (A:) Probab=81.81 E-value=3.7 Score=20.87 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=45.0 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHH--HHHHHHCCCCCEEEEE Q ss_conf 8379999642588667986999869999998345642026884530112-430211015898--7722110477159998 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELC--RIVEQYLRKGSKVYIE 81 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~A--e~~~~~l~KG~~V~V~ 81 (159) +++|.|+|.|.+ ++.. ...+.|.| .|.|- =+.|++|-.... .....-+..|+.|-|. T Consensus 47 i~~V~ivG~V~~---~~~~---~~~~~~~I--------------dD~TG~~i~~~~~~~~~~~~~~~~~~i~~G~~V~V~ 106 (159) T 3kf6_A 47 IRWIQIVGYIAA---IDIY---EGKHVLTV--------------DDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVF 106 (159) T ss_dssp ECEEEEEEEEEE---EEEE---TTEEEEEE--------------ECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEE T ss_pred EEEEEEEEEEEE---EEEE---CCEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE T ss_conf 899999999998---9995---45599999--------------889999179999876774334435568999599999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 4133333204688376889999977698466 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) |+++...- ++ .|.+..|..+.. T Consensus 107 G~i~~~~~-----~~----~i~~~~i~~v~d 128 (159) T 3kf6_A 107 GKINSFRS-----EV----ELIAQSFEELRD 128 (159) T ss_dssp EEEECSSS-----SC----EEEEEEEEEECS T ss_pred EEEEECCC-----EE----EEEEEEEEEECC T ss_conf 99966298-----88----999999999099 No 37 >>1b8a_A Protein (aspartyl-tRNA synthetase); tRNA ligase,; HET: ATP; 1.90A {Pyrococcus kodakaraensis} (A:1-108) Probab=79.78 E-value=4.4 Score=20.46 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=49.5 Q ss_pred CEEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH----HHHHHHHHCCCCCEEEE Q ss_conf 3799996425886679869998-699999983456420268845301124302110158----98772211047715999 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE----LCRIVEQYLRKGSKVYI 80 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~----~Ae~~~~~l~KG~~V~V 80 (159) ..|+|.|++-+ +|. .|+ .++.+ .|.+..+.|++..+. +.+. .+.|+.|+.|.| T Consensus 17 ~~V~v~GwV~~---iR~--~g~~~Fi~L----------------rD~~~~~Q~v~~~~~~~~~~~~~-~~~l~~~s~v~v 74 (108) T 1b8a_A 17 QKVKVAGWVWE---VKD--LGGIKFLWI----------------RDRDGIVQITAPKKKVDPELFKL-IPKLRSEDVVAV 74 (108) T ss_dssp CEEEEEEEEEE---EEE--ETTEEEEEE----------------EETTEEEEEEEETTTSCHHHHHH-GGGCCTTCEEEE T ss_pred CEEEEEEEEEE---EEC--CCCEEEEEE----------------EECCEEEEEEEECCCCCHHHHHH-HHCCCCCEEEEE T ss_conf 98999999870---883--898099999----------------93986399999589799999999-867998459999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 8413333320468837688999997769846677 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) +|.+....=. .+ ..||.|+++.+|.... T Consensus 75 ~G~v~~~~~~--~~----~~El~~~~i~ils~a~ 102 (108) T 1b8a_A 75 EGVVNFTPKA--KL----GFEILPEKIVVLNRAE 102 (108) T ss_dssp EEEEEECTTS--TT----SEEEEEEEEEEEECBC T ss_pred EEEEEECCCC--CC----CCEEEEEEEECCCCCC T ss_conf 9699937888--75----6421011111035667 No 38 >>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} (A:30-156) Probab=78.79 E-value=4.7 Score=20.27 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=49.8 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH-----HHHHHHHHCCCCCEEEE Q ss_conf 3799996425886679869998699999983456420268845301124302110158-----98772211047715999 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE-----LCRIVEQYLRKGSKVYI 80 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~-----~Ae~~~~~l~KG~~V~V 80 (159) ..|.|.|+|.+ +|....+..++.++ |.+..+.|++-.+. ..-.....|..|+.|.| T Consensus 27 ~~v~v~G~V~~---~R~~g~~~~Fi~lr----------------D~~~~~Q~~~~~~~~~~~~~~~~~~~~l~~g~~V~v 87 (127) T 3bju_A 27 ITLKVAGRIHA---KRASGGKLIFYDLR----------------GEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGV 87 (127) T ss_dssp CCEEEEEEEEE---EEESSSSEEEEEEE----------------ETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEE T ss_pred CEEEEEEEEEE---EECCCCCEEEEEEE----------------CCCEEEEEEEECCCCCCHHHHHHHHCEEEEEEEEEE T ss_conf 88999999884---88689938999996----------------797799999968867889999997481678758999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 84133333204688376889999977698466777 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~ 115 (159) +|.+.... .| .++|.|+.|.+|..... T Consensus 88 ~G~v~~t~----~g----e~El~~~~i~il~~a~~ 114 (127) T 3bju_A 88 QGNPGKTK----KG----ELSIIPYEITLLSPCLH 114 (127) T ss_dssp EEEEEECT----TC----CEEEEEEEEEEEECCCS T ss_pred EEEECCCC----CC----CCCCCCCCCHHHCCCCC T ss_conf 44552334----66----43222200000013432 No 39 >>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A (A:1-108) Probab=76.85 E-value=5.4 Score=19.93 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=49.7 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHH----HHHHHHHCCCCCEEEEEE Q ss_conf 7999964258866798699986999999834564202688453011243021101589----877221104771599984 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEEL----CRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~----Ae~~~~~l~KG~~V~V~G 82 (159) +|+|.|+|-+ +|.. |+. .|-. -.|.+..+.|++-.+.. -+.+ ..|..|+.|.|+| T Consensus 18 ~V~i~Gwv~~---~R~~--g~~--~Fi~-------------lrD~s~~~Q~v~~~~~~~~~~~~~~-~~l~~~s~V~V~G 76 (108) T 1x54_A 18 KVRLAGWVYT---NMRV--GKK--IFLW-------------IRDSTGIVQAVVAKNVVGEETFEKA-KKLGRESSVIVEG 76 (108) T ss_dssp EEEEEEEEEE---EEEE--TTE--EEEE-------------EEETTEEEEEEECHHHHCHHHHHHH-HTCCTTCEEEEEE T ss_pred EEEEEEEEEE---EECC--CCC--EEEE-------------EECCCCCEEEEEECCCCCHHHHHHH-HCCCCCEEEEEEE T ss_conf 9999998661---7757--992--9999-------------9809814899995897999999999-6499956999999 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 13333320468837688999997769846677 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) .++...= +.| ..||.++++.+|.... T Consensus 77 ~v~~~~~--~~~----~~Ei~v~~i~il~~~~ 102 (108) T 1x54_A 77 IVKADER--APG----GAEVHVEKLEVIQAVS 102 (108) T ss_dssp EEEECTT--SGG----GEEEEEEEEEEEECCS T ss_pred EEECCCC--CCC----CCCCCCCEEEECCCCC T ss_conf 9988988--878----7544420046424233 No 40 >>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:) Probab=68.85 E-value=8.4 Score=18.79 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=47.6 Q ss_pred CCCEEEEEEEECCCCEEEEC--CCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 78379999642588667986--9998-69999998345642026884530112430211015898772211047715999 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHT--QDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~--~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) .+..+.|.|+|.+--++|.. .+|. .+..+.|+ |++.=+.+++|++ +++.....|+.|+-+.+ T Consensus 13 ~~~~~~I~~rV~~~~~~~~~~~~~~~~~~~~~~l~--------------De~G~I~~~i~~~-~~~~f~~~l~eG~vy~i 77 (114) T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL--------------DTSGEIRATAFND-FATKFNEILQEGKVYYV 77 (114) T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE--------------ETTEEEEEEECHH-HHHHHHHHSCSSSEEEE T ss_pred CCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEE--------------CCCCCEEEEECHH-HHHHHHHHCCCCCEEEE T ss_conf 99968999999772256147679997459999999--------------4899699998414-64456665026988999 Q ss_pred EECCCC Q ss_conf 841333 Q gi|254780183|r 81 EGSLQT 86 (159) Q Consensus 81 ~Grl~~ 86 (159) .+-... T Consensus 78 ~~~~V~ 83 (114) T 1ynx_A 78 SKAKLQ 83 (114) T ss_dssp ESCEEE T ss_pred ECCEEE T ss_conf 343999 No 41 >>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae} (A:) Probab=68.59 E-value=8.5 Score=18.75 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=53.9 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) +|.|.|-|-|-+-. -..+ + +-|-|....... - |+ +.-|+|+-+-+-+ ++|--+..|.+|=.-+.++|.| T Consensus 8 LN~V~LEG~IeS~k---WS~k-K--TGF~VTI~QkR~--F-G~-r~FTDyyViYAN~-QL~~ELEky~~k~k~isIeG~L 76 (110) T 2hql_A 8 LNRVFLEGEIESSC---WSVK-K--TGFLVTIKQMRF--F-GE-RLFTDYYVIYANG-QLAYELEKHTKKYKTISIEGIL 76 (110) T ss_dssp CEEEEEEEEEEEEE---ECTT-C--SEEEEEEEEEEE--E-TT-EEEEEEEEEEEEH-HHHHHHHHHHTTCSEEEEEEEE T ss_pred HHHHHHHHHHHHHE---EEEC-C--CEEEEEEEEHHH--H-CC-EEEEEEEEEEECC-CHHHHHHHHHHHEEEEEEEEEE T ss_conf 98998751003430---0005-7--248999940433--2-50-4210689999888-2247789877540479997652 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEE Q ss_conf 33332046883768899999776 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSM 107 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i 107 (159) ++.. +.+.+. ..+.|.+..| T Consensus 77 ~TY~-ekkS~i--WKTtI~~~KI 96 (110) T 2hql_A 77 RTYL-ERKSEI--WKTTIEIVKI 96 (110) T ss_dssp EEEE-ETTTTE--EEEEEEEEEE T ss_pred EHHH-HHHHHH--HHHEEEEEEE T ss_conf 0477-776677--5540354440 No 42 >>3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* (A:1-145) Probab=67.46 E-value=9 Score=18.61 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=51.7 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH----HHHHHHHHCCCCCEEEEE Q ss_conf 3799996425886679869998699999983456420268845301124302110158----987722110477159998 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE----LCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~----~Ae~~~~~l~KG~~V~V~ 81 (159) -.|.|.|+|.+ +| .+|.. .|-.- .|.+..+.|.+-.+. +.+.+ ..|..|+.|.|. T Consensus 57 ~~V~v~GrV~~---~R--~~gk~--~Fi~l-------------rd~~~~iQ~~~~~~~~~~~~~~~~-~~l~~g~~v~V~ 115 (145) T 3e9h_A 57 IEVAVAGRIMT---KR--GMGKA--GFAHI-------------QDVTGQIQIYVRQDDVGEQQYELF-KISDLGDIVGVR 115 (145) T ss_dssp CEEEEEEEEEE---EE--CCSSE--EEEEE-------------EETTEEEEEEEEHHHHHHHHHHHH-HHCCTTCEEEEE T ss_pred CEEEEEEEEEE---EE--CCCCC--EEEEE-------------EECCEEEEEEEECCCCCHHHHHHH-HEEEEEEEEEEE T ss_conf 78999998770---87--68982--98999-------------819868999992774779998552-146654578885 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 413333320468837688999997769846677 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) |.+.... .| .++|.++.|.+|.... T Consensus 116 G~v~~~~----~g----~lEi~~~~i~ils~~~ 140 (145) T 3e9h_A 116 GTMFKTK----VG----ELSIKVSSYEFLTKAL 140 (145) T ss_dssp EEEEECT----TC----CEEEEEEEEEEEECCS T ss_pred EEEECCC----CC----CCCCEEEEEEEEECCC T ss_conf 0372157----76----5332035799974157 No 43 >>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} (A:112-268) Probab=67.20 E-value=9.1 Score=18.58 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=36.0 Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC--EEEEEEEEEEEEEECC Q ss_conf 430211015898772211047715999841333332046883--7688999997769846 Q gi|254780183|r 54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGN--NRYTTEIIMRSMVMLD 111 (159) Q Consensus 54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG~--~r~~~~V~a~~i~~l~ 111 (159) .+.|.+.++ +. +.++-|++|.|.|-++.+.|...... -.+.+-|.|.+|+..+ T Consensus 101 ~i~v~l~~d-lv----~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~i~a~~I~~~~ 155 (157) T 2vl6_A 101 QLEIILEDD-LV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 155 (157) T ss_dssp EEEEEEEGG-GT----TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC- T ss_pred EEEEEEECC-CC----CCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEEC T ss_conf 899999746-24----85479999999999986506766678741689999999999811 No 44 >>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A (A:) Probab=66.49 E-value=9.4 Score=18.50 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=44.4 Q ss_pred CCEEEEEEEECC--CCEEEECCCCCEE--EEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 837999964258--8667986999869--999998345642026884530112430211015898772211047715999 Q gi|254780183|r 5 LNKVILIGNLGA--DPDVRHTQDGRKI--VNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 5 mN~v~l~G~l~~--dPelr~~~~g~~v--~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) -..|.|+|.+.. ++....+.+|... ..+.| .|.|.-+.+++|+.. ++. .+..|+-|.+ T Consensus 11 g~~vdi~~~V~~~~~~~~~~~k~g~~~~~~~~~i--------------~D~Tg~i~~t~W~~~-~~~---~~~~g~iv~i 72 (97) T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFL--------------KDDTGSIRGTLWNEL-ADF---EVKKGDIAEV 72 (97) T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEE--------------EETTEEEEEEEEGGG-GGC---CCCTTCEEEE T ss_pred CCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEE--------------ECCCCEEEEEEECCH-HHC---CCCCCCEEEE T ss_conf 9945799999964674478857997538999999--------------459987999999916-740---6478999999 Q ss_pred EECCCCCC Q ss_conf 84133333 Q gi|254780183|r 81 EGSLQTRK 88 (159) Q Consensus 81 ~Grl~~~~ 88 (159) .|...... T Consensus 73 ~g~v~~~~ 80 (97) T 3e0e_A 73 SGYVKQGY 80 (97) T ss_dssp EEEEEEC- T ss_pred EEEEEECC T ss_conf 99999529 No 45 >>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:106-281) Probab=62.93 E-value=11 Score=18.09 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=39.1 Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CEEEEEEEEEEEEEECCCCCC Q ss_conf 43021101589877221104771599984133333204688--376889999977698466777 Q gi|254780183|r 54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSG--NNRYTTEIIMRSMVMLDGRRD 115 (159) Q Consensus 54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG--~~r~~~~V~a~~i~~l~~~~~ 115 (159) -+.|.+.++ ++ ..++-|++|.|.|-++...|..... ...+.+-|.|.+|+.+..... T Consensus 101 ~i~V~l~~d-Lv----d~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~i~a~~I~~~~~~~~ 159 (176) T 3f9v_A 101 QLEIILEDD-LV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLD 159 (176) T ss_dssp EEEEEEEGG-GT----TCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCC T ss_pred EEEEEEECC-CC----CCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCC T ss_conf 169999755-46----855899989999899851565545576520448999968984032233 No 46 >>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} (A:1-104) Probab=62.02 E-value=11 Score=17.99 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=49.0 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047715999841333 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT 86 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~ 86 (159) .|.|.|++-+ +|. +|+. .|-. -.|.+..+.|.+... ..|..|+.|.|+|.++. T Consensus 15 ~V~i~GwV~~---~R~--~gk~--~Fi~-------------LrD~sg~~q~~~~~~-------~~l~~~~~V~v~G~v~~ 67 (104) T 1n9w_A 15 EVELLGFLHW---RRD--LGRI--QFLL-------------LRDRSGVVQVVTGGL-------KLPLPESALRVRGLVVE 67 (104) T ss_dssp EEEEEEEEEE---EEE--CSSE--EEEE-------------EEETTEEEEEEEESC-------CCCCTTCEEEEEEEEEE T ss_pred EEEEEEEEEE---EEC--CCCE--EEEE-------------EEECCCCEEEEECCC-------CCCCCCCEEEEEEEEEC T ss_conf 8999999997---981--8987--9999-------------994990099998766-------36799988999999983 Q ss_pred CCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 33204688376889999977698466777 Q gi|254780183|r 87 RKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115 (159) Q Consensus 87 ~~~~~kdG~~r~~~~V~a~~i~~l~~~~~ 115 (159) ..= ..| .++|.|+.+.++..... T Consensus 68 ~~~--~~~----~~Ei~v~~i~il~~~~~ 90 (104) T 1n9w_A 68 NAK--APG----GLEVQAKEVEVLSPALE 90 (104) T ss_dssp CTT--STT----SEEEEEEEEEEEECCCS T ss_pred CCC--CCC----CEEEEEEEEEEEECCCC T ss_conf 699--997----88999839999977578 No 47 >>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} (A:104-132,A:172-279) Probab=58.86 E-value=11 Score=18.00 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=55.1 Q ss_pred CEEEEEEEECCCCEEEEC--CCCCEEEEEEEE-ECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 379999642588667986--999869999998-34564202688453011243021101589877221104771599984 Q gi|254780183|r 6 NKVILIGNLGADPDVRHT--QDGRKIVNIRIA-TSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~--~~g~~v~~f~va-~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) |-|.+-|-+++.-++|-. .+-..++.|--. .-+.--+-..|+ -+--+.|.+.++ ++ ..++-|+.|.|.| T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~S~fvD~QeIkIQE~pe~~~~G~---iPrsi~ViL~~d-Lv----d~v~PGD~V~ItG 80 (137) T 1ltl_A 9 KFVAVDGIVRKTDEIRPRIVKDESEFLDTQTLKLQEPLENLSGGE---QPRQITVVLEDD-LV----DTLTPGDIVRVTG 80 (137) T ss_dssp SEEEEEEEEEEECCCEEEEEEGGCEEEEEEEEEEECCSTTCCSSC---CCCEEEEEEEGG-GT----TCCCTTCEEEEEE T ss_pred EEEEEEEEEEECCCEEEEEEECCCEEEECEEEEEECCCCCCCCCC---CCEEEEEEEECC-CC----CCCCCCCEEEEEE T ss_conf 399999999975762588999754687010577551535589999---970899999154-00----8576998789999 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 1333332046883768899999776984667 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) -++... +.|...+.+.|.|.+|...... T Consensus 81 I~~~~~---~~~~~~~~~~i~A~~I~~~~~~ 108 (137) T 1ltl_A 81 TLRTVR---DERTKRFKNFIYGNYTEFLEQE 108 (137) T ss_dssp EEEEEE---ETTTTEEEEEEEEEECCBC--- T ss_pred EEEEEC---CCCCCCEEEEEEEEEEEEECCC T ss_conf 998754---8998723489999999994443 No 48 >>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} (A:) Probab=55.41 E-value=15 Score=17.31 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=42.6 Q ss_pred CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 7783799996425886679869--998-6999999834564202688453011243021101589877221104771599 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) ..++.+.|.|++.+--++|.+. +|. .+..+.|+ |++.=+++++|++. + ..|..|+-+. T Consensus 10 ~~~~~~~i~~rV~~~~~~r~~~~~~~~~~~~~~~i~--------------DetG~I~~t~w~~~-~----~~l~~G~v~~ 70 (119) T 1o7i_A 10 PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--------------DETGRVKLTLWGKH-A----GSIKEGQVVK 70 (119) T ss_dssp TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--------------ETTEEEEEEEEGGG-T----TCCCTTCEEE T ss_pred CCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEE--------------CCCCEEEEEEECCC-C----CCCCCCCEEE T ss_conf 989878999999988787347528997799999998--------------59987999982363-1----4389999999 Q ss_pred EEECC Q ss_conf 98413 Q gi|254780183|r 80 IEGSL 84 (159) Q Consensus 80 V~Grl 84 (159) +.+-- T Consensus 71 i~n~~ 75 (119) T 1o7i_A 71 IENAW 75 (119) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 95569 No 49 >>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B (D:) Probab=55.19 E-value=15 Score=17.29 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=45.0 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH--HHHHHHHHCCCCCEEEEEE Q ss_conf 83799996425886679869998699999983456420268845301124302110158--9877221104771599984 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE--LCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~--~Ae~~~~~l~KG~~V~V~G 82 (159) +..|.|+|.+.+ +...+ ....|+| .|.|--+.|+.|... ....-...++-|+.|-|.| T Consensus 31 i~~V~ivG~V~~---v~~~~---~~~~y~i--------------dDgTG~i~~~~~~~~~~~~~~~~~~i~~g~~V~V~G 90 (132) T 3kdf_D 31 ISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDXTAAPXDVRQWVDTDDTSSENTVVPPETYVKVAG 90 (132) T ss_dssp CCEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEEC---------CCCCTTCEEEEEE T ss_pred EEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE T ss_conf 999999999989---99778---7799999--------------889999589999789675712033266898999999 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 13333320468837688999997769846 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) +|+.-. |++ .|.+..|..+. T Consensus 91 ~i~~~~-----~~~----~i~~~~i~~v~ 110 (132) T 3kdf_D 91 HLRSFQ-----NKK----SLVAFKIXPLE 110 (132) T ss_dssp EEEEET-----TEE----EEEEEEEEECS T ss_pred EEEECC-----CEE----EEEEEEEEECC T ss_conf 995019-----858----99999999907 No 50 >>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} (A:38-158) Probab=53.01 E-value=16 Score=17.08 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=49.4 Q ss_pred EEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH-----HHHHHHHHHCCCCCEEEE Q ss_conf 799996425886679869998-69999998345642026884530112430211015-----898772211047715999 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE-----ELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~-----~~Ae~~~~~l~KG~~V~V 80 (159) +|.|.|+|.+ +|.. |+ .++.++ |.+..+.|.+..+ .+.+.+ ..|..|+.|.| T Consensus 29 ~V~i~GwV~~---iR~~--gk~~Fi~l~----------------d~~~~~Q~~~~~~~~~~~~~~~~~-~~l~~g~~v~V 86 (121) T 1e1o_A 29 EVSVAGRMMT---RRIM--GKASFVTLQ----------------DVGGRIQLYVARDSLPEGVYNDQF-KKWDLGDIIGA 86 (121) T ss_dssp EEEEEEEEEE---EEEE--TTEEEEEEE----------------ETTEEEEEEEETTTSSTTHHHHTG-GGCCTTCEEEE T ss_pred EEEEEEEEEE---EECC--CCCEEEEEE----------------ECCEEEEEEEECCCCCHHHHHHHH-HHCCCCCEEEE T ss_conf 8999886644---5368--994899998----------------188359999978858379999999-84567748999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 84133333204688376889999977698466777 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~ 115 (159) +|.+..+. .| .++|.++++.+|..... T Consensus 87 ~G~v~~~~----~g----~lEl~~~~i~ils~~~~ 113 (121) T 1e1o_A 87 RGTLFKTQ----TG----ELSIHCTELRLLTKALR 113 (121) T ss_dssp EEEEEECT----TC----CEEEEEEEEEEEECCSS T ss_pred EEEEECCC----CC----CEEEEEEEEEEEECCCC T ss_conf 94884389----97----58999999999854678 No 51 >>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} (A:1-180) Probab=36.83 E-value=29 Score=15.56 Aligned_cols=82 Identities=9% Similarity=0.155 Sum_probs=50.4 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC-CCCEEEEEECCC Q ss_conf 7999964258866798699986999999834564202688453011243021101589877221104-771599984133 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR-KGSKVYIEGSLQ 85 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~-KG~~V~V~Grl~ 85 (159) .|-|+|=+..--..+.+....-+++|+| ++.++.......+.+...-+.|.+|.+ ..+.+-. +. -||-|.+. +++ T Consensus 51 ~vnvigVV~d~~~P~~s~g~d~~~tl~I-~D~S~~~~~~~~~~~~~~gl~v~iF~~-~~~~LP~-V~~~GDIIll~-~v~ 126 (180) T 1jb7_A 51 PQHFYAVVIDATFPYKTNQERYICSLKI-VDPTLYLKQQKGAGDASDYATLVLYAK-RFEDLPI-IHRAGDIIRVH-RAT 126 (180) T ss_dssp CEEEEEEEEEECCCEECSSSCEEEEEEE-EBTTBSBCCTTSSCSCBCCEEEEEEES-SGGGSCC-CCEETCEEEEE-EEE T ss_pred EEEEEEEEEECCCCEECCCCEEEEEEEE-ECCCCCCCCCCCCCCCCCCEEEEEECC-CHHHCCC-CCCCCCEEEEE-EEE T ss_conf 0689999986238633699718999999-806776555455567888608999748-9778998-57789999999-889 Q ss_pred CCCCCCC Q ss_conf 3332046 Q gi|254780183|r 86 TRKWQDQ 92 (159) Q Consensus 86 ~~~~~~k 92 (159) ...|.++ T Consensus 127 v~~~~g~ 133 (180) T 1jb7_A 127 LRLYNGQ 133 (180) T ss_dssp EEEETTE T ss_pred EEEECCE T ss_conf 9998887 No 52 >>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} (A:1-148) Probab=34.26 E-value=32 Score=15.31 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.0 Q ss_pred HHHHHHHHHH---CCCCCEEEEEECCCCCCCC Q ss_conf 5898772211---0477159998413333320 Q gi|254780183|r 62 EELCRIVEQY---LRKGSKVYIEGSLQTRKWQ 90 (159) Q Consensus 62 ~~~Ae~~~~~---l~KG~~V~V~Grl~~~~~~ 90 (159) +++|+.+.+| ++||+.|+|.+.+....+. T Consensus 9 ~kyA~llV~~g~nvQ~gq~VlI~~~~~a~~l~ 40 (148) T 2ayi_A 9 EKLAELAIRVGLNLEKGQEVIATAPIEAVDFV 40 (148) T ss_dssp HHHHHHHHHTTTCCCTTCEEEEEECTTCHHHH T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH T ss_conf 99999999964478999989998066549999 No 53 >>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} (A:) Probab=32.76 E-value=25 Score=15.98 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=19.6 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 1015898772211047715999841 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~Gr 83 (159) ..| ++|..++++|.-|+.|+|.-- T Consensus 10 ~lG-RlAs~IAk~L~gGd~VvViNa 33 (142) T 1j3a_A 10 ILG-RLASRVAKMLLEGEEVVIVNA 33 (142) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEECG T ss_pred CHH-HHHHHHHHHHHCCCEEEEEEC T ss_conf 227-899999999808996999974 No 54 >>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} (A:1-153) Probab=32.25 E-value=35 Score=15.11 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=19.5 Q ss_pred HHHHHHHHHH---CCCCCEEEEEECCCCCC Q ss_conf 5898772211---04771599984133333 Q gi|254780183|r 62 EELCRIVEQY---LRKGSKVYIEGSLQTRK 88 (159) Q Consensus 62 ~~~Ae~~~~~---l~KG~~V~V~Grl~~~~ 88 (159) +++|+.+.++ ++||+.|+|.+.+-... T Consensus 12 ~kyAellV~~glnvq~Gq~vlI~~~~~a~p 41 (153) T 1zjc_A 12 QQYAELLVKVGMNVQPKQPVFIRSSVETLE 41 (153) T ss_dssp HHHHHHHHHTTTCCCTTCCEEEEEETTCHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCHHH T ss_conf 999999999711479999899985674399 No 55 >>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:) Probab=31.93 E-value=35 Score=15.08 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=38.1 Q ss_pred CCCCEEEEEEEECCCCEEEECC-----------CC--CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHH Q ss_conf 7783799996425886679869-----------99--8699999983456420268845301124302110158987722 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQ-----------DG--RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVE 69 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~-----------~g--~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~ 69 (159) ..++.|-|+|.+..-.+++... .| ..+..+.| .|.|.=+++++|+. .|+. T Consensus 24 ~~~~~vdi~~~V~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~i--------------~D~Tg~I~~tlW~~-~~~~-- 86 (145) T 1wjj_A 24 PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLI--------------GDETGCILFTARND-QVDL-- 86 (145) T ss_dssp TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEE--------------ECSSCEEEEEECTT-HHHH-- T ss_pred CCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEEEEE--------------ECCCCEEEEEEECC-CHHH-- T ss_conf 998991799999874231430346677532103687048999999--------------85888699998035-2200-- Q ss_pred HHCCCCCEEEEEECCCCCCCC Q ss_conf 110477159998413333320 Q gi|254780183|r 70 QYLRKGSKVYIEGSLQTRKWQ 90 (159) Q Consensus 70 ~~l~KG~~V~V~Grl~~~~~~ 90 (159) +..|+-|.+.|-. .+.|. T Consensus 87 --~~~Gdvv~i~~~~-v~~~~ 104 (145) T 1wjj_A 87 --MKPGATVILRNSR-IDMFK 104 (145) T ss_dssp --TCTTCEEEEEEEE-EEEET T ss_pred --CCCCCEEEEECEE-EEEEC T ss_conf --5768899994569-98889 No 56 >>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (J:) Probab=30.21 E-value=29 Score=15.57 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.9 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 1015898772211047715999841 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~Gr 83 (159) +.| ++|..++.+|..|+.|+|.-- T Consensus 18 ~lG-RlAs~iA~~l~~Gd~VvVvNa 41 (145) T 1vq8_J 18 IMG-RVASQVAEQALDGETVAVVNA 41 (145) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEECG T ss_pred CHH-HHHHHHHHHHCCCCEEEEEEC T ss_conf 738-879999998638987999967 No 57 >>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M (M:1-141) Probab=27.98 E-value=23 Score=16.21 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.2 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 101589877221104771599984 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ..| ++|..++++|..|+.|+|.= T Consensus 9 ~lG-RlAs~iA~~L~~Gd~ViViN 31 (141) T 3jyw_M 9 LVG-RLASVVAKQLLNGQKIVVVR 31 (141) T ss_dssp CSH-HHHHHHHHHHTTTCCCCEEC T ss_pred CHH-HHHHHHHHHHCCCCEEEEEE T ss_conf 757-88999999971899799998 No 58 >>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} (N:) Probab=20.56 E-value=58 Score=13.81 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=8.0 Q ss_pred HHCCCCCEEEEE Q ss_conf 110477159998 Q gi|254780183|r 70 QYLRKGSKVYIE 81 (159) Q Consensus 70 ~~l~KG~~V~V~ 81 (159) .++.+|+.|.|. T Consensus 102 ~~fG~GT~ltVs 113 (113) T 1sq2_N 102 AECGDGTAVTVN 113 (113) T ss_dssp CCBCCCEEEEEC T ss_pred CCCCCCEEEEEC T ss_conf 639909999989 No 59 >>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} (A:42-220) Probab=20.37 E-value=58 Score=13.78 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=45.8 Q ss_pred CCEEEEEEEECCCCEEEECCC-----CCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC-----C Q ss_conf 837999964258866798699-----986999999834564202688453011243021101589877221104-----7 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQD-----GRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR-----K 74 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~-----g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~-----K 74 (159) +++|-|+|.|++ .++... ...++.|+| +|.|.=..|++|-.........-++ - T Consensus 44 I~~V~i~G~VV~---~~~k~~~~~~~r~~~~~~~i--------------DD~SG~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (179) T 3kf8_A 44 VNQINIFGKIVY---EQYKEKEFNGVEESYVILVI--------------SDFIGIDSKIRVRLSQEQFKEVGLTLDKKNY 106 (179) T ss_dssp ECEEEEEEEEEE---EEEECCBCSSCBCCEEEEEE--------------ECCCSSSCEEEEEEEHHHHHTTTCCTTSCCT T ss_pred EEEEEEEEEEEE---EEEECCCCCCCCCCEEEEEE--------------ECCCCCCEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 189999999999---99723544576653499999--------------5689994689999576323565624444676 Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 7159998413333320468837688999997769846677 Q gi|254780183|r 75 GSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 75 G~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) |..+-+.|.+.--. -.=.|..|...+|.|+.+..+...+ T Consensus 107 ~~~~~i~G~i~~v~-g~i~~t~r~~rqi~ve~~~~~~d~n 145 (179) T 3kf8_A 107 GKIVELEGEIYNWY-DSINVSKKPDRELKVSKITVLSHRP 145 (179) T ss_dssp TCEEEEEEEEEECC-CSTTTTSCCCEEEEEEEEEEEESSS T ss_pred CCEEEEEEEEEEEE-EECCCCCCCCEEEEEEEEEEECCCC T ss_conf 84699987861054-2022232455389999999943677 Done!