Query         gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs    107 out of 2718
Neff          8.4 
Searched_HMMs 23785
Date          Mon May 23 12:27:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780183.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1se8_A Single-strand binding p 100.0 2.6E-39 1.1E-43  253.1  11.9  113    1-116   125-237 (301)
  2 3afp_A Single-stranded DNA-bin 100.0 9.7E-39 4.1E-43  249.7  11.9  110    2-112     1-111 (168)
  3 1eqq_A Single stranded DNA bin 100.0 2.4E-39 9.9E-44  253.4   6.9  113    2-115     1-118 (178)
  4 3eiv_A Single-stranded DNA-bin 100.0 2.2E-38 9.2E-43  247.6  11.6  107    2-109     1-108 (199)
  5 1z9f_A Single-strand binding p 100.0 1.2E-37 4.9E-42  243.3  11.5  141    2-159    13-153 (153)
  6 3lgj_A Single-stranded DNA-bin 100.0 3.6E-36 1.5E-40  234.4  11.4  144    3-159    21-169 (169)
  7 2fxq_A Single-strand binding p 100.0 1.3E-35 5.4E-40  231.1  12.6  110    1-116   124-233 (264)
  8 1qvc_A Single stranded DNA bin 100.0 1.4E-34 5.7E-39  225.0  14.3  113    2-115     2-117 (145)
  9 3ull_A DNA binding protein; DN 100.0 8.7E-35 3.7E-39  226.2  10.6  116    1-116    10-130 (132)
 10 2fxq_A Single-strand binding p 100.0 1.2E-33   5E-38  219.4  11.8  115    1-118     1-115 (264)
 11 2vw9_A Single-stranded DNA bin 100.0 3.7E-33 1.5E-37  216.5  13.7  111    5-117     2-112 (134)
 12 1se8_A Single-strand binding p 100.0 2.2E-33 9.3E-38  217.8  12.3  116    1-118     1-117 (301)
 13 3k7u_C MP18 RNA editing comple 100.0 2.2E-32 9.4E-37  211.8   9.8  112    1-114     2-118 (148)
 14 3k81_C MP18 RNA editing comple 100.0 1.6E-31 6.7E-36  206.8   8.2  111    2-114    19-134 (164)
 15 3koj_A Uncharacterized protein  99.9 9.6E-27 4.1E-31  178.3  10.1   98    3-108     9-107 (108)
 16 1v1q_A Primosomal replication   99.9 7.8E-26 3.3E-30  172.9  11.1  111    1-120    17-127 (134)
 17 1txy_A Primosomal replication   99.9   6E-24 2.5E-28  161.7   8.8  102    5-113     2-103 (104)
 18 3k8a_A Putative primosomal rep  99.9 5.1E-23 2.1E-27  156.1  10.7  101    1-112     3-103 (103)
 19 3fhw_A Primosomal replication   99.9 3.4E-21 1.4E-25  145.3  11.0  100    5-114     1-100 (115)
 20 3en2_A Probable primosomal rep  99.8 3.9E-21 1.6E-25  144.9   9.8   85    4-92      1-85  (101)
 21 3f2b_A DNA-directed DNA polyme  95.5    0.13 5.5E-06   28.6  10.4   87    3-112    15-103 (1041)
 22 2hpi_A DNA polymerase III alph  94.9   0.057 2.4E-06   30.8   6.0   80    6-111  1043-1122(1220)
 23 2k50_A Replication factor A re  93.0     0.3 1.3E-05   26.5   6.8   68    7-90     18-89  (115)
 24 1ynx_A Replication factor-A pr  89.8    0.75 3.2E-05   24.1   6.0   67    4-85     13-82  (114)
 25 3m4p_A Ehasnrs, asparaginyl-tR  89.2    0.84 3.5E-05   23.8   5.9   60   53-113    59-122 (456)
 26 3dm3_A Replication factor A; p  89.0     1.2 4.9E-05   23.0   8.8   83    2-111    12-98  (105)
 27 3e0e_A Replication protein A;   88.5     1.2   5E-05   22.9   6.3   81    3-111    10-94  (97)
 28 1o7i_A SSB, SSO2364, single st  86.6     1.2   5E-05   22.9   5.4   77    3-106    10-89  (119)
 29 2wkd_A ORF34P2; SSB, engineere  85.2    0.77 3.2E-05   24.1   3.8   34   68-105    50-83  (119)
 30 2pi2_A Replication protein A 3  84.3     1.7 7.3E-05   21.9   5.3   64    4-87     70-135 (270)
 31 2k75_A Uncharacterized protein  81.3     2.7 0.00012   20.8   5.6   65    3-90     11-77  (106)
 32 3kdf_D Replication protein A 3  78.8     3.3 0.00014   20.3   5.8   79    4-111    30-110 (132)
 33 1gm5_A RECG; helicase, replica  70.2     5.5 0.00023   19.0   4.6   65    7-90    167-233 (780)
 34 1wyd_A Hypothetical aspartyl-t  68.7     5.9 0.00025   18.8   8.2   83    6-114    17-99  (429)
 35 1l0w_A Aspartyl-tRNA synthetas  62.4     7.9 0.00033   18.0   7.9   87    6-113    17-103 (580)
 36 3i7f_A Aspartyl-tRNA synthetas  57.1     9.8 0.00041   17.5   8.6   87    6-114    63-154 (548)
 37 3kf6_A Protein STN1; OB fold,   52.6      12 0.00049   17.0   9.0   79    5-112    47-128 (159)
 38 2vl6_A SSO MCM N-TER, minichro  49.7      13 0.00054   16.8   4.9   51   55-110   213-265 (268)
 39 1eov_A ASPRS, aspartyl-tRNA sy  48.0      14 0.00058   16.6  10.2   86    7-113    38-130 (487)
 40 1c0a_A Aspartyl tRNA synthetas  44.4      16 0.00066   16.3   8.9   87    6-113    16-105 (585)
 41 1wjj_A Hypothetical protein F2  43.8      16 0.00067   16.2   4.5   77    4-107    25-114 (145)
 42 1jmc_A Protein (replication pr  35.9      21  0.0009   15.5   6.6   68    5-87     18-88  (246)
 43 3kf8_A Protein STN1; OB fold;   25.4      32  0.0014   14.4   7.1   97    5-114    85-186 (220)
 44 3nem_A Aspartyl-tRNA synthetas  24.3      34  0.0014   14.3  11.4   80    7-113    18-101 (438)
 45 1x54_A Asparaginyl-tRNA synthe  23.9      35  0.0015   14.2   8.8   81    7-114    18-102 (434)
 46 1c0p_A D-amino acid oxidase; a  23.0      32  0.0014   14.4   1.8   12    1-12      2-13  (363)
 47 1ltl_A DNA replication initiat  22.0      38  0.0016   14.0   3.4   51   54-112   199-249 (279)
 48 1vq8_J 50S ribosomal protein L  21.5      37  0.0016   14.0   1.9   23   59-82     18-40  (145)
 49 1j3a_A 50S ribosomal protein L  20.8      39  0.0017   13.9   1.9   22   59-81     10-31  (142)
 50 2hql_A Hypothetical protein Mg  20.2      41  0.0017   13.8  10.2   93    5-113     8-100 (110)

No 1  
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=100.00  E-value=2.6e-39  Score=253.10  Aligned_cols=113  Identities=29%  Similarity=0.578  Sum_probs=104.6

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      |+.+||+|+|+|||++|||+|++++|.++++|+||++++|+|+. ++|++.|+||+|++||+ +|+++ +||+||++|+|
T Consensus       125 m~~~~N~V~l~G~l~~dpe~r~t~~G~~~~~f~la~~~~~~~~~-g~~~~~t~~~~v~~w~~-~Ae~~-~~l~KG~~V~V  201 (301)
T 1se8_A          125 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWRD-LAENM-KELRKGDPVMI  201 (301)
T ss_dssp             EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETH-HHHHH-TTCCTTCEEEE
T ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEEECE-EEEEE-EEECCCCEEEE
T ss_conf             01475189999886998679999999889999999889879899-97874318999999763-46875-11338948999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf             841333332046883768899999776984667776
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS  116 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~  116 (159)
                      +|||++++|++++|++|+.++|+|++|.||..+...
T Consensus       202 ~G~l~~~~~~~~dG~~r~~~~i~a~~v~~l~~~~~~  237 (301)
T 1se8_A          202 MGRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN  237 (301)
T ss_dssp             EEEEEEEECC------CEEEEEEEEEEEECCC----
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCC
T ss_conf             987333365758996899999999999986577777


No 2  
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=100.00  E-value=9.7e-39  Score=249.73  Aligned_cols=110  Identities=25%  Similarity=0.449  Sum_probs=104.0

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8778379999642588667986999869999998345642026884530-112430211015898772211047715999
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||+.|+|+|+|||++|||||++++|.++++|+||++++|+++.+++|++ .|+||+|++||+ +|+++++||+||++|+|
T Consensus         1 Ma~~N~V~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~~g~~~~~~t~~~~v~~~g~-~Ae~~~~~~~KG~~V~V   79 (168)
T 3afp_A            1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWRE-AAENVAESLTRGARVIV   79 (168)
T ss_dssp             --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHH-HHHHHHHHCCTTCEEEE
T ss_pred             CCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHH-HHHHHHHHHCCCCEEEE
T ss_conf             99768899999847698899879997899999997244331467850246507579998769-99999997179998999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             84133333204688376889999977698466
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      +|||++++|++++|++|+.++|+|+.|.++..
T Consensus        80 ~G~l~~~~~~~~~g~~~~~~~i~a~~v~~~l~  111 (168)
T 3afp_A           80 TGRLKQRSFETREGEKRTVVEVEVDEIGPSLR  111 (168)
T ss_dssp             EEEEEEEEEC-CCSCCEEEEEEEEEEEEECCS
T ss_pred             EEEEECCCCCCCCCCEEEEEEEEEEEECCCCC
T ss_conf             99865365198999889999999987414311


No 3  
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=100.00  E-value=2.4e-39  Score=253.37  Aligned_cols=113  Identities=56%  Similarity=1.035  Sum_probs=104.3

Q ss_pred             CC--CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             87--7837999964258866798699986999999834564202688453011243021101589877221104771599
Q gi|254780183|r    2 VA--SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         2 m~--~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~   79 (159)
                      ||  +||+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|++.|+||+|+||| ++|+++++||+||++|+
T Consensus         1 m~~~~~N~v~l~G~l~~dPe~r~t~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~w~-~~Ae~~~~~l~KG~~V~   79 (178)
T 1eqq_A            1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFG-KLAEVASEYLRKGSQVY   79 (178)
T ss_dssp             -CCCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECH-HHHHHHHHHCCTTCEEE
T ss_pred             CCCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCEECCCCCCCCCCEEEEEEEEC-HHHHHHHHHCCCCCEEE
T ss_conf             98778758999998576988988789988999999972551004788331211589889945-02433455406999899


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEE---EEEECCCCCC
Q ss_conf             98413333320468837688999997---7698466777
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRD  115 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~---~i~~l~~~~~  115 (159)
                      |+|+|++++|++++|++|+.++|+|+   .+.++.++..
T Consensus        80 V~G~l~~~~~~d~~G~~~~~~~i~~~~~~~l~~~~~~~~  118 (178)
T 1eqq_A           80 IEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG  118 (178)
T ss_dssp             ECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCC
T ss_conf             998776146888899689999999941685678647666


No 4  
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} PDB: 3a5u_A*
Probab=100.00  E-value=2.2e-38  Score=247.61  Aligned_cols=107  Identities=26%  Similarity=0.471  Sum_probs=102.6

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8778379999642588667986999869999998345642026884530-112430211015898772211047715999
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||+.|+|+|+|||++|||||++++|.+||+|+||++++|+++.+++|++ .|+||+|++|+ ++|+++++||+||++|+|
T Consensus         1 Ma~~~~V~liG~l~~DPelr~t~~G~~v~~f~lA~~~~~~~~~~g~~~~~~t~~~~v~~w~-~~Ae~~~~~l~KG~~V~V   79 (199)
T 3eiv_A            1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWR-QAAENVAESLQRGMRVIV   79 (199)
T ss_dssp             ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEET-HHHHHHHHHCCTTCEEEE
T ss_pred             CCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEECCCEEEEEEEHHH-HHHHHHHHHCCCCCEEEE
T ss_conf             9987879999984759889888999889999999748703067884432520565511115-789999863589999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf             84133333204688376889999977698
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVM  109 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~  109 (159)
                      +|||++++|++++|++|+.++|+|++|.+
T Consensus        80 ~GrL~~~~~~dkdG~~r~~~evva~~v~~  108 (199)
T 3eiv_A           80 QGRLKQRSYEDREGVKRTVYELDVDEVGA  108 (199)
T ss_dssp             EEEEEEEC--------CCEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCCCCEEEEEEEEEEEEEE
T ss_conf             97977262299999889999999978100


No 5  
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=100.00  E-value=1.2e-37  Score=243.30  Aligned_cols=141  Identities=26%  Similarity=0.514  Sum_probs=115.7

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      |+.||+|+|+|||++|||+|++++|.++++|+||++++|+++ ++++.+.|+||+|++||+ +|+++++||+||++|+|+
T Consensus        13 M~~~N~v~l~G~l~~DPe~r~t~~g~~v~~f~vAv~~~~~~~-~~~~~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~   90 (153)
T 1z9f_A           13 MSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKN-APDDAQTTDFFRIVTFGR-LAEFARTYLTKGRLVLVE   90 (153)
T ss_dssp             CSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC------------CEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE
T ss_pred             HHHCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEECC-HHHHHHHHEECCCEEEEE
T ss_conf             413888999999066988999899987999999974650257-774212102699999252-067656515589899999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             413333320468837688999997769846677766667777777766777655666666765445677877455798
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF  159 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdiPF  159 (159)
                      |+|++++|++++|++|+.++|+|++|.||..+...........               ...|..........||||||
T Consensus        91 G~l~~~~~~~kdG~~r~~~~I~a~~i~~l~~k~~~~~~~~~~~---------------~~~~~~~~~~~~~~dDdiPF  153 (153)
T 1z9f_A           91 GEMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAETVSETEEE---------------LEIPEEDFSSDTFSEDEPPF  153 (153)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEEECC------------------------------------------------
T ss_pred             EEEEECCEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCC
T ss_conf             9988461899999899999999969998767875665666776---------------77886666778877689998


No 6  
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=100.00  E-value=3.6e-36  Score=234.42  Aligned_cols=144  Identities=41%  Similarity=0.738  Sum_probs=111.2

Q ss_pred             CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             7783799996425886679869998699999983456420268845301124-302110158987722110477159998
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      +-||+|+|+|||++|||||++++|.++++|+||++++|+++.++.|.+.+.| +.|++|+ ++|+++.++|+||++|+|+
T Consensus        21 ~mmN~v~LiGrlg~DPelr~t~sG~~v~~fsvAv~~~~~~~~~~~~~~~t~~~~~v~~~~-~~Ae~~~~~l~KG~~V~V~   99 (169)
T 3lgj_A           21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNP-HFAKIALQYLHKGSKVYIE   99 (169)
T ss_dssp             CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCH-HHHHHHHHHCCTTCEEEEE
T ss_pred             CEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEEEEC-HHHHHHHHHCCCCCEEEEE
T ss_conf             644789999986779889987899879999998714410134310267851899999961-4778998650248689999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEE----EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             41333332046883768899999776----98466777666677777777667776556666667654456778774557
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSM----VMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEI  157 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdi  157 (159)
                      |+|++++|++++|++|+.++|+|+.+    .+++++............            +..+.+..........||||
T Consensus       100 G~l~~~~~~dkdG~~r~~~eI~a~~~~~~~~~l~~k~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~dDdi  167 (169)
T 3lgj_A          100 GKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQSASSSSVTS------------QSYAIASGADDYGISAHDSM  167 (169)
T ss_dssp             EEEEEECC--------CEEEEEECTTCCEEEEECC---------------------------------------------
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCCEEECCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCC
T ss_conf             687746788079957999999998403727887778777778888788------------88777788877788877899


Q ss_pred             CC
Q ss_conf             98
Q gi|254780183|r  158 PF  159 (159)
Q Consensus       158 PF  159 (159)
                      ||
T Consensus       168 PF  169 (169)
T 3lgj_A          168 PF  169 (169)
T ss_dssp             --
T ss_pred             CC
T ss_conf             98


No 7  
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=100.00  E-value=1.3e-35  Score=231.11  Aligned_cols=110  Identities=29%  Similarity=0.507  Sum_probs=99.2

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      |..+||+|+|+|||++|||+|++++|.++++|+||++++|++    +++++|+||+|+|||+ +|+++ +||+||++|+|
T Consensus       124 ~~~~~N~v~l~G~l~~dpe~r~t~~g~~v~~f~lA~~~~~~~----~~~~~t~~~~v~~wg~-~Ae~~-~~l~KG~~V~V  197 (264)
T 2fxq_A          124 LRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRG----QEEERTHFLEVQAWRE-LAEWA-SELRKGDGLLV  197 (264)
T ss_dssp             -CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-----------EEEEEEEEEHH-HHHHH-TTCCTTCEEEE
T ss_pred             CCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCC----CCCCCEEEEEEEEECH-HHHHH-HHCCCCCEEEE
T ss_conf             112245421531203484268937995399997878888478----8777448999999770-43232-11479989999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf             841333332046883768899999776984667776
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS  116 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~  116 (159)
                      +|+|++++|++++|++|+.++|+|++|.++..+...
T Consensus       198 ~G~l~~~~~~d~dG~~r~~~~i~a~~v~~l~~~~~~  233 (264)
T 2fxq_A          198 IGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQ  233 (264)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred             EEEEEECEEECCCCCEEEEEEEEEEEEEECCCCCCC
T ss_conf             987662407999998999999999999966777765


No 8  
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=100.00  E-value=1.4e-34  Score=225.02  Aligned_cols=113  Identities=55%  Similarity=1.011  Sum_probs=104.0

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..+||+|+|+|||++|||+|++++|.++++|+||++++|++..++++++.|+||+|++||+ +|+++++||+||++|+|+
T Consensus         2 ~~~mN~v~L~G~l~~dpe~r~t~~g~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~wg~-~Ae~~~~~l~KG~~V~V~   80 (145)
T 1qvc_A            2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE   80 (145)
T ss_dssp             CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECH-HHHHHHHHHHCCCEEEEE
T ss_conf             8750499999988879889888999889999986132210257884403304898999870-778776650058889998


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEE---EEECCCCCC
Q ss_conf             4133333204688376889999977---698466777
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRS---MVMLDGRRD  115 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~---i~~l~~~~~  115 (159)
                      |+|++++|++++|++|+.++|+|+.   |.+|.++..
T Consensus        81 G~l~~~~~~~k~G~~r~~~ei~a~~~~~l~~l~~~~~  117 (145)
T 1qvc_A           81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG  117 (145)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCC
T ss_pred             EEEEECCCCCCCCCEEEEEEEEEECCCCEEECCCCCC
T ss_conf             5885132498999989999999923784889857677


No 9  
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=100.00  E-value=8.7e-35  Score=226.18  Aligned_cols=116  Identities=29%  Similarity=0.610  Sum_probs=108.0

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCC-----CCEEECEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             987783799996425886679869998699999983456420268-----845301124302110158987722110477
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVT-----NERREKTEWHSVIVFSEELCRIVEQYLRKG   75 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~-----~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG   75 (159)
                      |..+||+|+|+|||++|||+|++++|.++++|+||++++|++..+     ++|.+.|+||+|++||+.+|+++.+||+||
T Consensus        10 ~~~~mN~V~LiG~l~~dPelr~t~~G~~v~~f~lAv~~~~k~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG   89 (132)
T 3ull_A           10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG   89 (132)
T ss_dssp             CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred             ECCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCEECCEEECHHHHHHHHHHCCCC
T ss_conf             00784099999987879889986899889999998604302676754204514540100020001202466787633799


Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf             15999841333332046883768899999776984667776
Q gi|254780183|r   76 SKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS  116 (159)
Q Consensus        76 ~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~  116 (159)
                      ++|+|+|+|++++|+|++|++|+.++|+|++|.||+.+...
T Consensus        90 ~~V~V~G~l~~~~w~dkdG~~r~~~~i~a~~i~~L~~~~~~  130 (132)
T 3ull_A           90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE  130 (132)
T ss_dssp             CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred             CEEEEEEEEEECEEECCCCCEEEEEEEEEEEEEECCCCCCC
T ss_conf             69999999884617989998999999999699988899877


No 10 
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=100.00  E-value=1.2e-33  Score=219.40  Aligned_cols=115  Identities=30%  Similarity=0.560  Sum_probs=106.3

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      |+.+||+|+|+|||++|||+|++++|..+++|+||++++|+++ .++|++.+.||+|++||+ +|+++++||+||++|+|
T Consensus         1 ma~~~N~V~L~G~l~~dpe~r~~~~G~~v~~f~lA~~~~~~~~-~g~~~~~~~~~~v~~~g~-~Ae~~~~~l~KG~~V~V   78 (264)
T 2fxq_A            1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDE-SGQEREVPWYHRVRLLGR-QAEMWGDLLEKGQLIFV   78 (264)
T ss_dssp             --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEEEETH-HHHHHTTTCCTTCEEEE
T ss_pred             CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECC-CCCEECCCEEEEEEECCH-HHHHHHHHCCCCCEEEE
T ss_conf             9887619999999167987998799988999999978976989-998962568999999317-68999972779999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             84133333204688376889999977698466777666
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ  118 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~  118 (159)
                      +|+|++++|+ +||++|+.++|+|++|.+|+++.....
T Consensus        79 ~G~l~~~~~~-~dG~~~~~~~i~a~~v~~l~~r~~~~~  115 (264)
T 2fxq_A           79 EGRLEYRQWE-KDGEKKSEVQVRAEFIDPLEGRGRETL  115 (264)
T ss_dssp             EEEEEEC----------CCEEEEEEEEEECCCC-----
T ss_pred             EEEEECCCEE-ECCEEEEEEEEEEEEEECCCCCCCCCC
T ss_conf             9997738876-299199999999999981356676543


No 11 
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=100.00  E-value=3.7e-33  Score=216.51  Aligned_cols=111  Identities=31%  Similarity=0.502  Sum_probs=102.9

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
                      ||+|+|+|||++|||+|++++|..+++|+||++++|++ ..+++.++++||+|++||+ +|+++++||+||+.|+|+|+|
T Consensus         2 ~N~v~l~G~l~~dpe~r~~~~g~~v~~f~la~~~~~~~-~~~~~~~~t~~~~v~~~g~-~ae~~~~~l~KG~~V~V~G~l   79 (134)
T 2vw9_A            2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKK-QDGTLGEEVCFIDARLFGR-TAEIANQYLSKGSSVLIEGRL   79 (134)
T ss_dssp             CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEEEEE
T ss_pred             CEEEEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCC-CCCCEEEEEEEEEEEEEHH-HHHHHHHHCCCCCEEEEEEEE
T ss_conf             60799999917697899978998999999998076235-7886874505886678611-443323422099699999888


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCC
Q ss_conf             333320468837688999997769846677766
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSL  117 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~  117 (159)
                      ++++|++++|++++.++|+|++|.||+.+....
T Consensus        80 ~~~~~~~kdG~~~~~~~i~~~~i~~l~~k~~~~  112 (134)
T 2vw9_A           80 TYESWMDQTGKKNSRHTITADSLQFMDKKSDNP  112 (134)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEEEECCCC----
T ss_pred             EECEEECCCCCEEEEEEEEEEEEEECCCCCCCC
T ss_conf             855169999989999999998999855777786


No 12 
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=100.00  E-value=2.2e-33  Score=217.81  Aligned_cols=116  Identities=27%  Similarity=0.457  Sum_probs=105.7

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHH-HHHCCCCCEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772-21104771599
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIV-EQYLRKGSKVY   79 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~-~~~l~KG~~V~   79 (159)
                      |+.+||+|+|+|||++|||+|++++|..+++|+||++++|+++. +++++.++||+|++||+ +|+++ .+||+||++|+
T Consensus         1 ma~~mN~v~l~G~l~~dpe~~~~~~g~~v~~f~lA~~~~~~~~~-g~~~~~~~~~~v~~~g~-~ae~~~~~~l~KG~~V~   78 (301)
T 1se8_A            1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGK-PAEWQAERNLKGGDAVV   78 (301)
T ss_dssp             --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEE
T ss_pred             CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEECCEEEEEEEECH-HHHHHHHHHCCCCCEEE
T ss_conf             98751499999993669889988999889999999789558799-98973347999999887-99999987256687899


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             984133333204688376889999977698466777666
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ  118 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~  118 (159)
                      |+|+|++++|++++|++|+.++|+|++|.||+++.....
T Consensus        79 V~G~l~~~~~~dkdG~~r~~~~i~a~~v~~l~~~~~~~~  117 (301)
T 1se8_A           79 VEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQ  117 (301)
T ss_dssp             EEEEEEEEEEC-----CEEEEEEEEEEEEECSSCCCEEE
T ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCC
T ss_conf             999978512398999889999999989998158653333


No 13 
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D
Probab=99.97  E-value=2.2e-32  Score=211.84  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=101.6

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      |+.+||+|+|+||| .|||+|++ +|..+++|+||++++|+++.+++|+++|+||+|+|||+.+|+++.+||+||++|+|
T Consensus         2 m~~~~N~V~LiG~v-~D~e~~~~-~~~~v~~fslA~~~~~~~~~~g~~~~~t~w~~v~~~g~~~ae~~~~~l~KG~~V~V   79 (148)
T 3k7u_C            2 MSKSVNSVTLVGVV-HDIQSGFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV   79 (148)
T ss_dssp             ---CCCCEEEEEEE-EEEEEEES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred             CCCCCEEEEEEEEC-CCCEEEEE-CCCEEEEEEEEEEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHCCCCEEEE
T ss_conf             77763289999966-89705760-89808999985323247068882603442799999857999999988467999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEE-----EEEECCCCC
Q ss_conf             8413333320468837688999997-----769846677
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMR-----SMVMLDGRR  114 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~-----~i~~l~~~~  114 (159)
                      +|+|++++|+|++|.+++.++|++.     .+.++.+..
T Consensus        80 ~G~l~~~~~~D~~g~k~~~~~vi~v~~~~g~~~~~~~~~  118 (148)
T 3k7u_C           80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDR  118 (148)
T ss_dssp             EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEECCCCC
T ss_conf             999775011848999899999999925875046505766


No 14 
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.97  E-value=1.6e-31  Score=206.75  Aligned_cols=111  Identities=21%  Similarity=0.316  Sum_probs=98.2

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      +.++|+|+|+||| .|||+++. +|.+|++|+||++++|+++.+++++++|+||+|+|||+.+|+.+.+||+||++|+|+
T Consensus        19 ~rsvNkV~LiG~v-~d~e~~~~-~~~~V~~FslAt~~~~~~~~~ge~~e~Tewh~Vv~fg~~lae~~~~yl~KG~~V~Ve   96 (164)
T 3k81_C           19 CKSVNSVTLVGVV-HDIQSGFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN   96 (164)
T ss_dssp             -CCEEEEEEEEEE-ECCCCEES-SSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC
T ss_pred             CCCCCEEEEEEEC-CCCCCCCC-CCCCEEEEEEECCCCEEECCCCCEEEEEEEEEEEEECHHHHHHHHHHHCCCCEEEEE
T ss_conf             3774189999836-99532242-897379999850565030789741000107999998879999999870689999999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEE-EE----EEEECCCCC
Q ss_conf             4133333204688376889999-97----769846677
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEII-MR----SMVMLDGRR  114 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~-a~----~i~~l~~~~  114 (159)
                      |+|++++|+|++|.++|+++++ +.    .+.+|.+..
T Consensus        97 G~Lrtr~~~D~~g~k~~~~~~I~v~~~~g~~~~l~~~~  134 (164)
T 3k81_C           97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDR  134 (164)
T ss_dssp             CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC--
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEECCCC
T ss_conf             99886757868999898989999967888077813888


No 15 
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.94  E-value=9.6e-27  Score=178.29  Aligned_cols=98  Identities=17%  Similarity=0.302  Sum_probs=89.6

Q ss_pred             CCCCEEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             7783799996425886679869998-699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ++||+|+|+|||++|||||+|++|. +++.|++++++.+.       ++.++|++|++||+ +||.++++|+||++|+|+
T Consensus         9 s~MN~v~l~G~l~~dPElr~T~~g~~~v~~~~v~~~~~~~-------~~~~~~i~v~~wg~-~Ae~~~~~l~kG~~V~V~   80 (108)
T 3koj_A            9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSS-------KDAPARLKVVGWGA-VAQELQDRCRLNDEVVLE   80 (108)
T ss_dssp             SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC------------CCEEEEEEEETH-HHHHHHHHCCTTCEEEEE
T ss_pred             HHCCEEEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCC-------CCCCEEEEEEEEHH-HHHHHHHHCCCCCEEEEE
T ss_conf             1279999999987896799967998899999999679845-------78977999999889-999999860899999999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             413333320468837688999997769
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMV  108 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~  108 (159)
                      |+|+.++|+++||++++.++|+|+.|.
T Consensus        81 G~l~~~~~~~kdG~k~~~~ei~a~~i~  107 (108)
T 3koj_A           81 GRLRINSLLKPDGNREKQTELTVTRVH  107 (108)
T ss_dssp             EEEEEEC--------CCEEEEEEEEEE
T ss_pred             EEEECEEEECCCCCEEEEEEEEEEECC
T ss_conf             998772889999989999999998705


No 16 
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.93  E-value=7.8e-26  Score=172.88  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||  +|+|+|+|||++|||+|+|++|.++++|+||+++.+.  ..+.+++.+.|++|++||+ +|+.+++||+||++|+|
T Consensus        17 mm--~N~v~L~G~l~~dpelR~Tp~G~~v~~f~La~~s~~~--e~~~~r~~~~~i~vv~~G~-~Ae~~~~~l~KG~~V~V   91 (134)
T 1v1q_A           17 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV   91 (134)
T ss_dssp             GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE
T ss_pred             CC--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCEE--CCCCEEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEE
T ss_conf             31--0089999997668646799999839999998735260--5896077789999999958-99999975378999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             8413333320468837688999997769846677766667
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE  120 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~  120 (159)
                      +|+|.+++|  ++|+.+.  .|.|++|+||+++.......
T Consensus        92 ~G~L~~rs~--kng~~r~--vl~a~~IefLds~~~~~a~~  127 (134)
T 1v1q_A           92 QGFISCHKA--KNGLSKM--VLHAEQIELIDSVDKLAAAL  127 (134)
T ss_dssp             EEEEEEECT--TTTSCEE--EEEEEEEEETTSCSCCCC--
T ss_pred             EEEEEEEEC--CCCCCEE--EEEEEEEEEECCCCCCCCHH
T ss_conf             999573106--4899889--99999999803787532012


No 17 
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A
Probab=99.90  E-value=6e-24  Score=161.66  Aligned_cols=102  Identities=15%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
                      .|+|+|+|+|++|||+|+|++|.++++|+||+++.+ . ..+++++...|++|++||+ +|+.+++||+||++|+|+|+|
T Consensus         2 ~N~v~l~G~l~~dpelR~Tp~G~~v~~f~la~~s~~-~-e~~~~r~~~~~i~~v~~g~-~Ae~~~~~l~kG~~V~V~G~L   78 (104)
T 1txy_A            2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQ-E-EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITVQGFI   78 (104)
T ss_dssp             CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE-E-ETTEEEEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEEEEE
T ss_pred             CEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE-E-CCCCEEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEEEEEE
T ss_conf             049999999667871889899976999999972058-4-2895698878998999929-999988754799999999998


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             33332046883768899999776984667
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      ..++|  ++|+.+  +.+.|++|+||++.
T Consensus        79 ~~~~~--~~g~~r--~vl~~~~ie~ldsg  103 (104)
T 1txy_A           79 SCHKA--KNGLSK--MVLHAEQIELIDSG  103 (104)
T ss_dssp             EC----------C--CEEEEEEEEEC---
T ss_pred             EEECC--CCCCCE--EEEEEEEEEEECCC
T ss_conf             86225--389964--99999899993389


No 18 
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.89  E-value=5.1e-23  Score=156.11  Aligned_cols=101  Identities=13%  Similarity=0.116  Sum_probs=88.5

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||+++|+|+|+|+|++|||||||++|.++++|+||+++.+.  ..+++++.+.|++|++||+ +||.++  ++||++|+|
T Consensus         3 ~m~~~N~v~L~G~l~~~pelRyTp~G~~v~~f~La~~~~~~--~~~~~r~~~~~i~~va~G~-~Ae~~~--l~kG~~v~v   77 (103)
T 3k8a_A            3 HMGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE--ENGQQCLVQLEIPARILGR-QAEEWQ--YRQGDCATV   77 (103)
T ss_dssp             -CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEHH-HHHHST--TCTTCEEEE
T ss_pred             CCCCCCEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEHH--CCCCCCEEEEEEEEEEECH-HHHHHH--HCCCCEEEE
T ss_conf             66653579999998778638899999889999999710110--1887200217999999737-634232--379999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             84133333204688376889999977698466
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      +|+|..++|.++      .+.+-+++|+++++
T Consensus        78 ~G~L~~rs~~s~------qlv~hi~~ie~~~g  103 (103)
T 3k8a_A           78 EGFLAQKSRRSL------MPMLRIQNIKEYKG  103 (103)
T ss_dssp             EEEEEESSSSCC------CEEEEEEEEEECCC
T ss_pred             EEEEEECCCCCC------EEEEEEEEEEECCC
T ss_conf             999772567688------05999999998579


No 19 
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.85  E-value=3.4e-21  Score=145.29  Aligned_cols=100  Identities=13%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
                      ||+|+|+|+|++||+||||++|.++++|+||+++.+ . ..+++++.+.|++|++||+ +||.++ +|+||+.|.|+|+|
T Consensus         1 mN~v~L~G~l~~~~~lRyTPsG~~V~~f~Lah~s~~-~-e~g~~r~~~~~i~vva~G~-~Ae~~~-~l~kG~~v~v~G~L   76 (115)
T 3fhw_A            1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEV-V-EAGHPRRVELTISAVALGD-LALLLA-DTPLGTEMQVQGFL   76 (115)
T ss_dssp             CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEC-C-CCC--CEEEEEEEEEEETH-HHHHHT-TCCTTCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEE-E-CCCCCCCEEEEEEEEEEHH-HHHHHH-HCCCCCEEEEEEEE
T ss_conf             978999999876863889899977899999932012-0-4887353449999999948-823204-13799999999996


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             333320468837688999997769846677
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      ..++|..+      .+.+-+++|+++.++.
T Consensus        77 ~~rs~~s~------~lvlHi~~iq~i~g~~  100 (115)
T 3fhw_A           77 APARKDSV------KVKLHLQQARRIAGSM  100 (115)
T ss_dssp             EESSTTCS------SEEEEEEEEEECCCSC
T ss_pred             CCCCCCCC------CEEEEEEEEEEECCCC
T ss_conf             52668898------3699989999926888


No 20 
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.85  E-value=3.9e-21  Score=144.92  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=76.0

Q ss_pred             CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             78379999642588667986999869999998345642026884530112430211015898772211047715999841
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGS   83 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Gr   83 (159)
                      |||+|+|+|+|++|||||+|++|.++++|+||+++.+.  ..+.+++.+.|++|++||+ +|+.+++ |+||+.|+|+|+
T Consensus         1 ~mN~v~L~G~l~~~pelRyTpsG~~v~~f~la~~~~~~--e~g~~r~~~~~i~vv~~G~-~Ae~~~~-l~kG~~v~v~G~   76 (101)
T 3en2_A            1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAM--EAQAARQVEFSIEALGAGK-MASVLDR-IAPGTVLECVGF   76 (101)
T ss_dssp             CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEE--CC--EEEEEEEEEEEEETH-HHHHHTT-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEE--CCCCCEEEEEEEEEEEEHH-HHHHHHH-CCCCCEEEEEEE
T ss_conf             93199999998778746899999789999999852380--5997105779999999908-9576664-589999999999


Q ss_pred             CCCCCCCCC
Q ss_conf             333332046
Q gi|254780183|r   84 LQTRKWQDQ   92 (159)
Q Consensus        84 l~~~~~~~k   92 (159)
                      |.+++|.++
T Consensus        77 L~~rs~~~~   85 (101)
T 3en2_A           77 LARKHRSSK   85 (101)
T ss_dssp             EEECC----
T ss_pred             EEECCCCCC
T ss_conf             972675389


No 21 
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=95.45  E-value=0.13  Score=28.61  Aligned_cols=87  Identities=22%  Similarity=0.345  Sum_probs=61.1

Q ss_pred             CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH--HHHHHHHHHCCCCCEEEE
Q ss_conf             778379999642588667986999869999998345642026884530112430211015--898772211047715999
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE--ELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~--~~Ae~~~~~l~KG~~V~V   80 (159)
                      ..+++|++-|.|-. .|.|.+.+|+.+.+|.|.              |.|+=+.|+.|-+  ...+.+ ..++||+-|.|
T Consensus        15 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~--------------d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (1041)
T 3f2b_A           15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--------------DYTNSILVKMFSRDKEDAELM-SGVKKGMWVKV   78 (1041)
T ss_dssp             SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--------------CSSCEEEEEEECSSHHHHHHH-HTCCTTCEEEE
T ss_pred             CCCCEEEEEEEEEE-EEEEEECCCCEEEEEEEE--------------ECCCCEEEEEECCCCCHHHHH-HCCCCCCEEEE
T ss_conf             73666999999998-776860489889999998--------------268868999955874408898-40679968999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             84133333204688376889999977698466
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      .|.+..++|. +      .+.+.+..+..+..
T Consensus        79 ~g~~~~~~~~-~------~~~~~~~~~~~~~~  103 (1041)
T 3f2b_A           79 RGSVQNDTFV-R------DLVIIANDLNEIAA  103 (1041)
T ss_dssp             EEEEEEETTT-T------EEEEEEEEEEEECC
T ss_pred             EEEEECCCCC-C------CEEEEEEEEEECCC
T ss_conf             9988515777-7------41797101365577


No 22 
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.86  E-value=0.057  Score=30.78  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ   85 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~   85 (159)
                      ..|.+.|-|.. ...+.|.+|..++-++|              .|.+.-+.|++|.+.+ +.....|+.|..|+|+|++.
T Consensus      1043 ~~v~vaG~I~~-v~~~~TKkG~~maf~tl--------------eD~tG~iev~vF~~~y-~~~~~~L~~~~~l~v~G~v~ 1106 (1220)
T 2hpi_A         1043 PKVLLSGMVEE-VVRKPTRSGGMMARFTL--------------SDETGALEVVVFGRAY-EGVSPKLKEDIPLLVLAEVE 1106 (1220)
T ss_dssp             CEEEEEEEECC-C------------CEEE--------------EETTEEEEEC--------------CTTCEEEEEEEEC
T ss_pred             CEEEEEEEEEE-EEECCCCCCCEEEEEEE--------------EECCCCEEEEECHHHH-HHHHHHHCCCCEEEEEEEEE
T ss_conf             88999999978-89732799996999999--------------9899988999837999-99988753598799999999


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             33320468837688999997769846
Q gi|254780183|r   86 TRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        86 ~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
                      .     .+|     +.|+|++|.-|+
T Consensus      1107 ~-----~~~-----~~i~~~~i~~L~ 1122 (1220)
T 2hpi_A         1107 K-----GEE-----LRVLAQAVWTLE 1122 (1220)
T ss_dssp             ---------------CEEEEEEEEHH
T ss_pred             E-----CCC-----EEEEEEECCCHH
T ss_conf             8-----994-----489983515599


No 23 
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.00  E-value=0.3  Score=26.47  Aligned_cols=68  Identities=19%  Similarity=0.293  Sum_probs=46.7

Q ss_pred             EEEEEEEECCCCEEEEC--CCCC--EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             79999642588667986--9998--6999999834564202688453011243021101589877221104771599984
Q gi|254780183|r    7 KVILIGNLGADPDVRHT--QDGR--KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~--~~g~--~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      .+.|+|++.+-.++|..  .+|.  .+.++.|+              |.|.-++|++|++ .|+... .|+.|+.|.|.|
T Consensus        18 ~v~v~g~V~~~~~~r~~~~k~G~~~~~~~i~l~--------------D~TG~I~vt~W~~-~~~~~~-~l~~Gdvv~i~~   81 (115)
T 2k50_A           18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIA--------------DDTGELRAVFWTE-NIKLLK-KFREGDVIRIKD   81 (115)
T ss_dssp             EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE--------------ETTEEEEEEEETT-GGGGGG-TCCTTSEEEEEE
T ss_pred             EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEE--------------CCCCEEEEEEEHH-HHHHHC-CCCCCCEEEEEC
T ss_conf             767999999856976899179989689999998--------------4999799999502-213442-699999999970


Q ss_pred             CCCCCCCC
Q ss_conf             13333320
Q gi|254780183|r   83 SLQTRKWQ   90 (159)
Q Consensus        83 rl~~~~~~   90 (159)
                      --..+.|.
T Consensus        82 ~~vk~~~~   89 (115)
T 2k50_A           82 VNIRGGFG   89 (115)
T ss_dssp             EEECCCSS
T ss_pred             CEECCCCC
T ss_conf             09882359


No 24 
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=89.76  E-value=0.75  Score=24.11  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CCCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             7837999964258866798699--9-869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQD--G-RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~--g-~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      .+++.+|.||+.+--++|.+.+  | ..+..|.|+      |.       ... +.|++|++ +++.....|+.|.-.++
T Consensus        13 ~~~~w~I~~RV~~k~~~~~~~~~~~~g~v~~~~l~------De-------~G~-I~~~~~~~-~~~~~~~~L~~G~vy~i   77 (114)
T 1ynx_A           13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL------DT-------SGE-IRATAFND-FATKFNEILQEGKVYYV   77 (114)
T ss_dssp             TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE------ET-------TEE-EEEEECHH-HHHHHHHHSCSSSEEEE
T ss_pred             CCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEE------CC-------CCC-EEEEEECH-HHCCHHHHEECCCEEEE
T ss_conf             99967999999882156036558996449999999------18-------998-99999121-20121310215879999


Q ss_pred             EECCC
Q ss_conf             84133
Q gi|254780183|r   81 EGSLQ   85 (159)
Q Consensus        81 ~Grl~   85 (159)
                      .+=..
T Consensus        78 ~~f~V   82 (114)
T 1ynx_A           78 SKAKL   82 (114)
T ss_dssp             ESCEE
T ss_pred             ECEEE
T ss_conf             33099


No 25 
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=89.24  E-value=0.84  Score=23.83  Aligned_cols=60  Identities=17%  Similarity=0.356  Sum_probs=38.7

Q ss_pred             EEECCCCCHHHHH--HHHHHHCCCCCEEEEEECCCCCCCCCCCCC--EEEEEEEEEEEEEECCCC
Q ss_conf             2430211015898--772211047715999841333332046883--768899999776984667
Q gi|254780183|r   53 EWHSVIVFSEELC--RIVEQYLRKGSKVYIEGSLQTRKWQDQSGN--NRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        53 ~~~~v~~~g~~~A--e~~~~~l~KG~~V~V~Grl~~~~~~~kdG~--~r~~~~V~a~~i~~l~~~  113 (159)
                      ..+.|++..+...  +.+ +.+++|+.|.|.|.+..+...++...  ....++|.|..+.+|...
T Consensus        59 g~iQvv~~~~~~~~~~~~-~~l~~e~~v~v~G~v~~~~~~~~~~~~~~~~~~ei~~~~~~vl~~~  122 (456)
T 3m4p_A           59 GYCQCVIFGKELCEPEKV-KLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES  122 (456)
T ss_dssp             CEEEEEEESTTTTCHHHH-TTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred             CCEEEEEECCCCCCHHHH-HCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf             768999948877889999-6088840999999998344877788665534799999999972678


No 26 
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=88.99  E-value=1.2  Score=23.00  Aligned_cols=83  Identities=13%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             CCCCCEEEEEEEECCCCEEEEC--CCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             8778379999642588667986--99986--9999998345642026884530112430211015898772211047715
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHT--QDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSK   77 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~--~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~   77 (159)
                      ...|+ |.|.|++.+-.+.|..  .+|..  +.++.|+              |.|.=+++++|+.+ ++   ..++.|+-
T Consensus        12 ~~g~~-v~v~g~V~~~~~~r~~~~~~G~~~~~~~~~i~--------------D~tg~i~~t~W~~~-~~---~~~~~G~v   72 (105)
T 3dm3_A           12 SPGMT-ATFEGEVISALPIKEFKRADGSIGKLKSFIVR--------------DETGSIRVTLWDNL-TD---IDVGRGDY   72 (105)
T ss_dssp             CSSEE-EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE--------------ETTEEEEEEEEGGG-GG---SCCCTTCE
T ss_pred             CCCCE-EEEEEEEEECCCCEEEECCCCCEEEEEEEEEE--------------CCCCCEEEEEECCC-CC---CCCCCCCE
T ss_conf             99987-89999999925877988589988899999999--------------29993999997601-02---55899999


Q ss_pred             EEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             9998413333320468837688999997769846
Q gi|254780183|r   78 VYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        78 V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
                      |.+.|. ..+.|.   |.    .++.+.+...++
T Consensus        73 v~i~g~-~v~~~~---g~----~~l~~~~~~~i~   98 (105)
T 3dm3_A           73 VRVRGY-IREGYY---GG----LECTANYVEILK   98 (105)
T ss_dssp             EEEEEE-EEECTT---SS----EEEEEEEEEEEE
T ss_pred             EEEEEE-EEECCC---CC----EEEEECCCEEEC
T ss_conf             999869-971458---90----899979966981


No 27 
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=88.47  E-value=1.2  Score=22.91  Aligned_cols=81  Identities=16%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCCEEEEEEEECCCCEEEEC--CCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             778379999642588667986--99986--99999983456420268845301124302110158987722110477159
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHT--QDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKV   78 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~--~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V   78 (159)
                      ..+| ++|.|++.+--+.|..  .+|..  +.++.|              .|.|..+++++|++. ++   ..++.|+.|
T Consensus        10 ~g~~-v~i~g~V~~~~~~r~~~~k~g~~~~v~~~~i--------------~D~TG~i~~~~W~~~-~~---~~~~~g~~v   70 (97)
T 3e0e_A           10 PNLS-GTINAEVVTAYPKKEFSRKDGTKGQLKSLFL--------------KDDTGSIRGTLWNEL-AD---FEVKKGDIA   70 (97)
T ss_dssp             TTEE-EEEEEEEEEECCCEEEC----CCEEEEEEEE--------------EETTEEEEEEEEGGG-GG---CCCCTTCEE
T ss_pred             CCCE-EEEEEEEEECCCCEEEECCCCCEEEEEEEEE--------------ECCCCCEEEEEECHH-HH---HCCCCCCEE
T ss_conf             9983-8899999981475798847997308999999--------------849980999996845-73---162689799


Q ss_pred             EEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             998413333320468837688999997769846
Q gi|254780183|r   79 YIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        79 ~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
                      .|.|..+  .|.  .|     +++.......++
T Consensus        71 ~v~g~v~--~~~--~~-----~el~~~~~~~I~   94 (97)
T 3e0e_A           71 EVSGYVK--QGY--SG-----LEISVDNIGIIE   94 (97)
T ss_dssp             EEEEEEE--EC----C-----EEEEEEEEEEEE
T ss_pred             EEEEEEE--ECC--CE-----EEEEECCCEEEE
T ss_conf             9999999--649--82-----899949951898


No 28 
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=86.63  E-value=1.2  Score=22.93  Aligned_cols=77  Identities=17%  Similarity=0.300  Sum_probs=49.2

Q ss_pred             CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             7783799996425886679869--998-6999999834564202688453011243021101589877221104771599
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~   79 (159)
                      ..|+.|.|.|++.+-.+.|.+.  +|. .++++.|+              |.|..+++++|++. ++    .+..|+.|.
T Consensus        10 p~~~~v~i~~~V~~~~~~r~~~~k~g~~~v~~~~i~--------------D~TG~i~~tlW~~~-~~----~i~~Gd~v~   70 (119)
T 1o7i_A           10 PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--------------DETGRVKLTLWGKH-AG----SIKEGQVVK   70 (119)
T ss_dssp             TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--------------ETTEEEEEEEEGGG-TT----CCCTTCEEE
T ss_pred             CCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEE--------------CCCCEEEEEEECCC-CC----CCCCCCEEE
T ss_conf             999878999999988787168738998899999998--------------69987999880575-34----489999999


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             984133333204688376889999977
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRS  106 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~  106 (159)
                      |.+-- .+.|.   |    .+++.+..
T Consensus        71 i~~~~-v~~~~---g----~~~l~~~~   89 (119)
T 1o7i_A           71 IENAW-TTAFK---G----QVQLNAGS   89 (119)
T ss_dssp             EEEEE-EEEET---T----EEEEEECT
T ss_pred             EEEEE-EEEEC---C----EEEEEECC
T ss_conf             94559-99979---9----79999899


No 29 
>2wkd_A ORF34P2; SSB, engineered protein, lactococcal phage protein, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=85.25  E-value=0.77  Score=24.06  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             HHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             22110477159998413333320468837688999997
Q gi|254780183|r   68 VEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMR  105 (159)
Q Consensus        68 ~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~  105 (159)
                      +..++.=|+.|.|.||++...    +|++.+.--+.+.
T Consensus        50 lpd~v~~GDivTvsgri~ake----~G~y~nyNfvfpt   83 (119)
T 2wkd_A           50 MPDFIQMGDTVTVSGRVQAKE----SGEYVNYNFVFPT   83 (119)
T ss_dssp             CCTTCCTTCEEEEEEEEEEC----------CEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEEEEEC----CCCEEEEEEECCE
T ss_conf             255111374799851254302----5734752265032


No 30 
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=84.25  E-value=1.7  Score=21.94  Aligned_cols=64  Identities=13%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHH-HHHHHHHHHCCCCCEEEEE
Q ss_conf             78379999642588667986999869999998345642026884530112-430211015-8987722110477159998
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSE-ELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~-~~Ae~~~~~l~KG~~V~V~   81 (159)
                      .+++|+|+|.|.+   +...+   ..+.|+|              .|.|- -+.|++|-+ ...+.....++-|+.|-|.
T Consensus        70 ~v~~V~iVG~V~~---v~~~~---t~~~y~i--------------dDgTG~~i~~~~w~~~~~~~~~~~~i~~g~yVrV~  129 (270)
T 2pi2_A           70 EISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA  129 (270)
T ss_dssp             EESEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEECC-------CCCCCTTCEEEEE
T ss_pred             EEEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf             9899999999968---88568---6789999--------------87998827999963788764335524479889999


Q ss_pred             ECCCCC
Q ss_conf             413333
Q gi|254780183|r   82 GSLQTR   87 (159)
Q Consensus        82 Grl~~~   87 (159)
                      |+|+.-
T Consensus       130 G~lk~f  135 (270)
T 2pi2_A          130 GHLRSF  135 (270)
T ss_dssp             EEEEEE
T ss_pred             EEECCC
T ss_conf             997233


No 31 
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=81.31  E-value=2.7  Score=20.77  Aligned_cols=65  Identities=18%  Similarity=0.228  Sum_probs=41.8

Q ss_pred             CCCCEEEEEEEECCCCEEEECCCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             77837999964258866798699986--9999998345642026884530112430211015898772211047715999
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      .+|..|.|+|++..=-+..++.+|..  ++++.||              |.|.-+++++|++        .+..|+.|.+
T Consensus        11 ~~~~~V~i~gkV~~i~~r~~~kdG~~~~v~~~~i~--------------D~TG~ir~t~W~~--------~i~~Gd~v~i   68 (106)
T 2k75_A           11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE--------------DDTARIRISSFGK--------QLQDSDVVRI   68 (106)
T ss_dssp             TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE--------------CSSCEEEEEEESS--------CCCTTEEEEE
T ss_pred             CCCCCEEEEEEEEEECCCEEEECCCEEEEEEEEEE--------------CCCCEEEEEEECC--------CCCCCCEEEE
T ss_conf             89995799999959536789969976899999998--------------8997899999699--------8899989999


Q ss_pred             EECCCCCCCC
Q ss_conf             8413333320
Q gi|254780183|r   81 EGSLQTRKWQ   90 (159)
Q Consensus        81 ~Grl~~~~~~   90 (159)
                      .|--.. .|.
T Consensus        69 ~~a~v~-~~~   77 (106)
T 2k75_A           69 DNARVA-QFN   77 (106)
T ss_dssp             EEEEEE-EET
T ss_pred             EEEEEE-EEC
T ss_conf             008998-769


No 32 
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B
Probab=78.81  E-value=3.3  Score=20.28  Aligned_cols=79  Identities=11%  Similarity=0.225  Sum_probs=45.8

Q ss_pred             CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf             783799996425886679869998699999983456420268845301124-3021101589-87722110477159998
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSEEL-CRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~~~-Ae~~~~~l~KG~~V~V~   81 (159)
                      .+++|.|+|.+.+   +...+   ....|.|              .|.|-. +.|..|-... ...-...++-|+.|-|.
T Consensus        30 ~v~~V~iVG~V~~---v~~~~---t~~~y~I--------------dDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~   89 (132)
T 3kdf_D           30 EISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA   89 (132)
T ss_dssp             ECCEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEEC---------CCCCTTCEEEEE
T ss_pred             EEEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf             9999999999999---99879---7899999--------------88999948999977877563325405479999999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             413333320468837688999997769846
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
                      |+|+.  |   +|++    .|.+..|..+.
T Consensus        90 G~lk~--~---~~~~----~I~~~~i~~v~  110 (132)
T 3kdf_D           90 GHLRS--F---QNKK----SLVAFKIMPLE  110 (132)
T ss_dssp             EEEEE--E---TTEE----EEEEEEEEECS
T ss_pred             EEEEE--E---CCEE----EEEEEEEEEEC
T ss_conf             99953--0---9858----99999999927


No 33 
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=70.23  E-value=5.5  Score=18.96  Aligned_cols=65  Identities=18%  Similarity=0.410  Sum_probs=38.1

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCC--CCEEEEEECC
Q ss_conf             79999642588667986999869999998345642026884530112430211015898772211047--7159998413
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRK--GSKVYIEGSL   84 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~K--G~~V~V~Grl   84 (159)
                      .+++.|.|.+- +.+.+. +..+..+.+      .|        .+..+.|+.|+.   .++.+++++  |..|+|.|++
T Consensus       167 ~~ti~g~I~~~-~~~~~~-~~~~~~~~~------~D--------~tg~i~l~fFn~---~~~~~~lk~~~G~~v~v~Gkv  227 (780)
T 1gm5_A          167 KVTTQGKIVSV-ETKKFQ-NMNILTAVL------SD--------GLVHVPLKWFNQ---DYLQTYLKQLTGKEVFVTGTV  227 (780)
T ss_dssp             CCEEEECCCCC-EEEECS-SCEEEEEEE------CC--------SSCCEEEEECSC---CTTHHHHHTTCSSCEEEEEEE
T ss_pred             EEEEEEEEEEE-ECCCCC-CCEEEEEEE------EE--------CCEEEEEEEECC---HHHHHHHHHCCCCEEEEEEEE
T ss_conf             69999999985-456689-973699999------98--------988999999596---899986634589989999999


Q ss_pred             CCCCCC
Q ss_conf             333320
Q gi|254780183|r   85 QTRKWQ   90 (159)
Q Consensus        85 ~~~~~~   90 (159)
                      +...|.
T Consensus       228 k~~~~~  233 (780)
T 1gm5_A          228 KSNAYT  233 (780)
T ss_dssp             CSCCTT
T ss_pred             EECCCC
T ss_conf             975857


No 34 
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str}
Probab=68.72  E-value=5.9  Score=18.77  Aligned_cols=83  Identities=22%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ   85 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~   85 (159)
                      .+|+|.|+|.+   +|.  .|+ + .|-.-     +|        .+..+.|++-.+.........|..|+-|.|.|.+.
T Consensus        17 ~~V~v~Gwv~~---~R~--~gk-~-~Fi~l-----rD--------~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~   76 (429)
T 1wyd_A           17 KEVIWAGWVHL---LRD--LGG-K-KFIIL-----RD--------KTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVK   76 (429)
T ss_dssp             CEEEEEEEEEE---EEE--ETT-E-EEEEE-----EE--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred             CEEEEEEEEEE---EEC--CCC-C-EEEEE-----EE--------CCCCEEEEEECCCCHHHHHHCCCCCEEEEEEEEEE
T ss_conf             98999999898---987--898-0-99999-----93--------88158999948930078994589954999997997


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             33320468837688999997769846677
Q gi|254780183|r   86 TRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      ...    .|+.  ..++.+..+.++....
T Consensus        77 ~~~----~~~~--~~e~~~~~i~~l~~~~   99 (429)
T 1wyd_A           77 ADK----RAPR--GIELHAEEITLLSKAK   99 (429)
T ss_dssp             ECS----SSGG--GEEEEEEEEEEEECCC
T ss_pred             CCC----CCCC--CEEEEEECCEEECCCC
T ss_conf             888----8987--6699741002302445


No 35 
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=62.36  E-value=7.9  Score=18.03  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ   85 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~   85 (159)
                      .+|+|.|+|-+   +|.  .|+ + .|-.-.     |        .+..+.|++-....+....+.+..|+.|.|.|.+.
T Consensus        17 ~~V~v~Gwv~~---~R~--~g~-l-~Fi~l~-----D--------~s~~lQvv~~~~~~~~~~~~~l~~~s~v~v~G~v~   76 (580)
T 1l0w_A           17 EEVVLEGWVNR---RRD--LGG-L-IFLDLR-----D--------REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVR   76 (580)
T ss_dssp             CEEEEEEEEEE---EEE--CSS-C-EEEEEE-----E--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred             CEEEEEEEEEE---EEC--CCC-C-EEEEEE-----E--------CCEEEEEEEECCCHHHHHHHCCCCCCEEEEEEEEE
T ss_conf             98999999770---884--898-3-999999-----7--------98879999968842289996599987899999999


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             3332046883768899999776984667
Q gi|254780183|r   86 TRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      .+....... +...++|.|+.+.+|...
T Consensus        77 ~~~~~~~~~-~~g~~El~v~~i~vl~~~  103 (580)
T 1l0w_A           77 LRPEPNPRL-ATGRVEVELSALEVLAEA  103 (580)
T ss_dssp             ECSSCCTTS-TTTTEEEEEEEEEEEECC
T ss_pred             ECCCCCCCC-CCCEEEEEEEEEEEEECC
T ss_conf             178768868-887399999999998755


No 36 
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=57.10  E-value=9.8  Score=17.48  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCC-----HHHHHHHHHHHCCCCCEEEE
Q ss_conf             3799996425886679869998699999983456420268845301124302110-----15898772211047715999
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF-----SEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~-----g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      .+|+|.|+|-+   +|.  .|+ ++ |-.--     |        .+.-+.|++.     .+.+-+.+ +.++.|+.|-|
T Consensus        63 ~~V~v~GrV~~---~R~--~Gk-~~-Fl~Lr-----D--------~~g~iQ~v~~~~~~~~~~~~~~~-~~l~~esvv~V  121 (548)
T 3i7f_A           63 KTVTIRARVQA---VRG--KGN-MV-FLFLR-----K--------GIYTCQALVMKSETISKEFVQFC-QKISAESICDI  121 (548)
T ss_dssp             CEEEEEEEEEE---EEE--CSS-EE-EEEEE-----E--------TTEEEEEEEECSSSSCHHHHHHH-HTCCTTEEEEE
T ss_pred             CEEEEEEEEEE---EEC--CCC-EE-EEEEE-----E--------CCCCEEEEEECCCCCCHHHHHHH-HCCCCCCEEEE
T ss_conf             98999899887---875--898-59-99997-----1--------87118999978988759999999-65998648999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             8413333320468837688999997769846677
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      +|.++.+.-.. ...+...++|.|++|.+|....
T Consensus       122 ~G~V~~~~~~~-~~~~~g~iEi~v~~i~vls~a~  154 (548)
T 3i7f_A          122 TGIVKAVEKPI-EKATQQDVEIHVTSIAVVSLAE  154 (548)
T ss_dssp             EEEEEECSSCC-TTSSSCSEEEEEEEEEEEECCC
T ss_pred             EEEEECCCCCC-CCCCCCCEEEEEEEEEEEECCC
T ss_conf             98997468876-7689986799997999986467


No 37 
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=52.57  E-value=12  Score=17.04  Aligned_cols=79  Identities=13%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHH--HHHHHHCCCCCEEEEE
Q ss_conf             8379999642588667986999869999998345642026884530112-430211015898--7722110477159998
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELC--RIVEQYLRKGSKVYIE   81 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~A--e~~~~~l~KG~~V~V~   81 (159)
                      +++|.|+|.|.+   +....+   .+.|+|              +|.|. -+.|++|-....  .....-+.-|+.|-|.
T Consensus        47 I~~V~ivG~Vvs---v~~~~~---~~~y~I--------------DDgTG~~I~~~~w~~~~~~~~~~~~~i~~G~~VrV~  106 (159)
T 3kf6_A           47 IRWIQIVGYIAA---IDIYEG---KHVLTV--------------DDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVF  106 (159)
T ss_dssp             ECEEEEEEEEEE---EEEETT---EEEEEE--------------ECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEEEEEEEEEEE---EEEECC---EEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             899999999999---999456---699999--------------889999179999886774445435558989599999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             4133333204688376889999977698466
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      |+|+.  |.   |.+    .|.|..+..+..
T Consensus       107 G~l~~--f~---~~r----qi~~~~i~~v~D  128 (159)
T 3kf6_A          107 GKINS--FR---SEV----ELIAQSFEELRD  128 (159)
T ss_dssp             EEEEC--SS---SSC----EEEEEEEEEECS
T ss_pred             EEEEE--CC---CEE----EEEEEEEEECCC
T ss_conf             99966--19---888----999999999098


No 38 
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=49.68  E-value=13  Score=16.76  Aligned_cols=51  Identities=16%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CEEEEEEEEEEEEEEC
Q ss_conf             3021101589877221104771599984133333204688--3768899999776984
Q gi|254780183|r   55 HSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSG--NNRYTTEIIMRSMVML  110 (159)
Q Consensus        55 ~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG--~~r~~~~V~a~~i~~l  110 (159)
                      +.|.+.++ +.    +.++-|++|.|.|-++...|.....  ...+.+-|.|.+|+..
T Consensus       213 i~v~l~~d-Lv----d~~~pGd~V~i~Gil~~~~~~~~~~~~~~~~~~~l~a~~Ie~~  265 (268)
T 2vl6_A          213 LEIILEDD-LV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVS  265 (268)
T ss_dssp             EEEEEEGG-GT----TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC
T ss_pred             EEEEEECC-CC----CCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEE
T ss_conf             99999667-33----8417999999999998760576667885158999999999993


No 39 
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=48.01  E-value=14  Score=16.60  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCH-------HHHHHHHHHHCCCCCEEE
Q ss_conf             7999964258866798699986999999834564202688453011243021101-------589877221104771599
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFS-------EELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g-------~~~Ae~~~~~l~KG~~V~   79 (159)
                      +|+|.|+|.+   +|.  .|+.++=+.| .     |        .+..+.|++-.       ..+-+.+ ..|..|+.|.
T Consensus        38 ~V~v~G~V~~---~R~--~Gk~l~Fi~L-r-----D--------~~g~iQvv~~~~~~~~~~~~~~~~~-~~l~~~~~v~   97 (487)
T 1eov_A           38 EVLFRARVHN---TRQ--QGATLAFLTL-R-----Q--------QASLIQGLVKANKEGTISKNMVKWA-GSLNLESIVL   97 (487)
T ss_dssp             EEEEEEEEEE---EEE--CSSSEEEEEE-E-----E--------TTEEEEEEEECCSSSSSCHHHHHHH-TTCCTTCEEE
T ss_pred             EEEEEEEEEC---CCC--CCCCCEEEEE-E-----E--------CCEEEEEEEECCCCCCCCHHHHHHH-CCCCCCEEEE
T ss_conf             9999998811---014--8998888999-8-----6--------9887999997886664279999997-0899854999


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             9841333332046883768899999776984667
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      |.|.+....-....+ ....++|.+..+.+|...
T Consensus        98 v~G~v~~~~~~~~~~-~~~~~ei~~~~i~~l~~~  130 (487)
T 1eov_A           98 VRGIVKKVDEPIKSA-TVQNLEIHITKIYTISET  130 (487)
T ss_dssp             EEEEEEECSSCCTTS-SEEEEEEEEEEEEEEECC
T ss_pred             EEEEEEECCCCCCCC-CCCEEEEEEEEEEEECCC
T ss_conf             998999478887789-863399999999995168


No 40 
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=44.37  E-value=16  Score=16.26  Aligned_cols=87  Identities=15%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHH--HHHHHCCCCCEEEEEEC
Q ss_conf             3799996425886679869998699999983456420268845301124302110158987--72211047715999841
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCR--IVEQYLRKGSKVYIEGS   83 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae--~~~~~l~KG~~V~V~Gr   83 (159)
                      ..|+|.|+|-+   +|..  |+ + .|-.-     +|        .+.-+.|++=.+. ++  .....|..|+.|.|+|.
T Consensus        16 ~~V~v~Gwv~~---~R~~--gk-l-~Fi~l-----rD--------~s~~iQvv~~~~~-~~~~~~~~~l~~~s~v~v~G~   74 (585)
T 1c0a_A           16 QQVTLCGWVNR---RRDL--GS-L-IFIDM-----RD--------REGIVQVFFDPDR-ADALKLASELRNEFCIQVTGT   74 (585)
T ss_dssp             CEEEEEEEEEE---EEEC--SS-C-EEEEE-----EE--------TTEEEEEEECGGG-HHHHHHHTTCCTTCEEEEEEE
T ss_pred             CEEEEEEEEEE---EECC--CC-C-EEEEE-----EE--------CCEEEEEEEECCC-CCHHHHHHCCCCCCEEEEEEE
T ss_conf             98999997440---8858--99-6-99999-----95--------9878999997984-319999844999758999989


Q ss_pred             CCCCCCCCCCCC-EEEEEEEEEEEEEECCCC
Q ss_conf             333332046883-768899999776984667
Q gi|254780183|r   84 LQTRKWQDQSGN-NRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        84 l~~~~~~~kdG~-~r~~~~V~a~~i~~l~~~  113 (159)
                      ++.+.-...+.. ....++|.|+.+.+|...
T Consensus        75 v~~~~~~~~~~~~~~ge~ei~~~~l~~l~~~  105 (585)
T 1c0a_A           75 VRARDEKNINRDMATGEIEVLASSLTIINRA  105 (585)
T ss_dssp             EEECCTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred             EEECCCCCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf             9905876767777887289999699995068


No 41 
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=43.84  E-value=16  Score=16.22  Aligned_cols=77  Identities=14%  Similarity=0.115  Sum_probs=44.4

Q ss_pred             CCCEEEEEEEECCCCEEEECCC-------------CCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHH
Q ss_conf             7837999964258866798699-------------986999999834564202688453011243021101589877221
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQD-------------GRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQ   70 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~-------------g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~   70 (159)
                      .|+.|.|.+++..--+.+.+..             ...++.+.|+              |.|--+++++|++ .++    
T Consensus        25 ~~~~vnl~~kVl~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~v~--------------DeTG~i~~tlW~~-~~~----   85 (145)
T 1wjj_A           25 GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG--------------DETGCILFTARND-QVD----   85 (145)
T ss_dssp             TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE--------------CSSCEEEEEECTT-HHH----
T ss_pred             CCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEE--------------CCCCEEEEEEEEC-CCC----
T ss_conf             999807999998731436741456422210135887479999997--------------5887799999612-201----


Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf             1047715999841333332046883768899999776
Q gi|254780183|r   71 YLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM  107 (159)
Q Consensus        71 ~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i  107 (159)
                      .++.|+.|.|.+-.. +.|.   |    .++|.+.+.
T Consensus        86 ~~~~Gdvv~i~n~~v-~~~~---g----~~~L~~g~~  114 (145)
T 1wjj_A           86 LMKPGATVILRNSRI-DMFK---G----TMRLGVDKW  114 (145)
T ss_dssp             HTCTTCEEEEEEEEE-EEET---T----EEEEEECTT
T ss_pred             CCCCCCEEEEEEEEE-EEEC---C----EEEEEECCC
T ss_conf             257899999964899-9778---9----799997998


No 42 
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=35.86  E-value=21  Score=15.46  Aligned_cols=68  Identities=13%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             CCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             83799996425886679869--998-699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      +.+..|.|++.+--++|.+.  +|. .+.++.|+      |..       .. ++|++|++ +++.....|+.|+-+.+.
T Consensus        18 ~~~~~I~~rV~~k~~~r~f~~~~~~~~v~~~~l~------D~~-------G~-I~~~~~~~-~~~~~~~~l~eG~vy~i~   82 (246)
T 1jmc_A           18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DES-------GE-IRATAFNE-QVDKFFPLIEVNKVYYFS   82 (246)
T ss_dssp             CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CSS-------CE-EEEEEEHH-HHHHHGGGCCTTCEEEEE
T ss_pred             CCCEEEEEEEEEECCCEEEECCCCCEEEEEEEEE------CCC-------CC-EEEEECCC-CHHHHHHHCCCCCEEEEC
T ss_conf             9868999999971353587669996389999998------799-------97-99997554-301000010046399988


Q ss_pred             ECCCCC
Q ss_conf             413333
Q gi|254780183|r   82 GSLQTR   87 (159)
Q Consensus        82 Grl~~~   87 (159)
                      +-....
T Consensus        83 ~~~V~~   88 (246)
T 1jmc_A           83 KGTLKI   88 (246)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
T ss_conf             878997


No 43 
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=25.42  E-value=32  Score=14.39  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CCEEEEEEEECCCCEEEEC-CCC--CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHC--CCCCEEE
Q ss_conf             8379999642588667986-999--8699999983456420268845301124302110158987722110--4771599
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHT-QDG--RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYL--RKGSKVY   79 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~-~~g--~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l--~KG~~V~   79 (159)
                      ++.|-|+|.|+.- ..+.. ..|  ..++-++|  +     -.+|    ....+.|.|--..+.+.-....  .-|..|-
T Consensus        85 I~~VrIvG~VVg~-~yk~~~~~~~~~~y~iltI--D-----DsSG----~~s~i~vk~~~~~~~s~gl~~~s~n~G~~Ve  152 (220)
T 3kf8_A           85 VNQINIFGKIVYE-QYKEKEFNGVEESYVILVI--S-----DFIG----IDSKIRVRLSQEQFKEVGLTLDKKNYGKIVE  152 (220)
T ss_dssp             ECEEEEEEEEEEE-EEECCBCSSCBCCEEEEEE--E-----CCCS----SSCEEEEEEEHHHHHTTTCCTTSCCTTCEEE
T ss_pred             EEEEEEEEEEEEE-EEECCCCCCCCCCEEEEEE--E-----CCCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf             1899999999999-9842655666653499999--5-----6999----9468999957510256664445467684599


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             98413333320468837688999997769846677
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      |+|.+..--=. -++..|+.-++.++.+..+....
T Consensus       153 i~G~is~~~~~-~~~~~r~~rqL~ve~i~vl~~~~  186 (220)
T 3kf8_A          153 LEGEIYNWYDS-INVSKKPDRELKVSKITVLSHRP  186 (220)
T ss_dssp             EEEEEEECCCS-TTTTSCCCEEEEEEEEEEEESSS
T ss_pred             EEEEECCEEEE-CCCCCCCCEEEEEEEEEEECCCC
T ss_conf             99886104420-22132465379999999943678


No 44 
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=24.26  E-value=34  Score=14.25  Aligned_cols=80  Identities=21%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCC----HHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             799996425886679869998699999983456420268845301124302110----1589877221104771599984
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF----SEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~----g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      +|+|.|+|.+   +|.  .|+  +.|-.-     +|        .+.-+.|++-    +...-+.+ ..|+.|+.|.|+|
T Consensus        18 ~V~v~GwV~~---~R~--~g~--l~Fi~L-----rD--------~~g~iQv~~~~~~~~~~~~~~~-~~l~~g~~v~v~G   76 (438)
T 3nem_A           18 KVKVAGWVWE---VKD--LGG--IKFLWI-----RD--------RDGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVEG   76 (438)
T ss_dssp             EEEEEEEEEE---EEE--ETT--EEEEEE-----EE--------TTEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEEE
T ss_pred             EEEEEEEEEE---EEC--CCC--CEEEEE-----EE--------CCEEEEEEEECCCCCHHHHHHH-HCCCCCEEEEEEE
T ss_conf             9999999881---884--798--099999-----95--------9863999995897999999998-2899834999996


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             1333332046883768899999776984667
Q gi|254780183|r   83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      .+..+.    .|+.  ..+|.+..+.++...
T Consensus        77 ~v~~~~----~~~~--~iei~~~~~~~ls~~  101 (438)
T 3nem_A           77 VVNFTP----KAKL--GFEILPEKIVVLNRA  101 (438)
T ss_dssp             EEEECT----TSTT--SEEEEEEEEEEEECB
T ss_pred             EEEECC----CCCC--EEEEEEEEEEECCCC
T ss_conf             999279----9973--089976556521466


No 45 
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=23.89  E-value=35  Score=14.21  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH----HHHHHHHHCCCCCEEEEEE
Q ss_conf             799996425886679869998699999983456420268845301124302110158----9877221104771599984
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE----LCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~----~Ae~~~~~l~KG~~V~V~G   82 (159)
                      +|+|.|+|.+   +|.  .|+ + .|-.-     +|.        +.-+.|++-.+.    .-+.+ ..|..|+.|.|+|
T Consensus        18 ~V~v~GrV~~---~R~--~Gk-l-~F~~L-----rD~--------~g~iQvv~~~~~~~~~~~~~~-~~l~~~~~V~v~G   76 (434)
T 1x54_A           18 KVRLAGWVYT---NMR--VGK-K-IFLWI-----RDS--------TGIVQAVVAKNVVGEETFEKA-KKLGRESSVIVEG   76 (434)
T ss_dssp             EEEEEEEEEE---EEE--ETT-E-EEEEE-----EET--------TEEEEEEECHHHHCHHHHHHH-HTCCTTCEEEEEE
T ss_pred             EEEEEEEEEE---EEC--CCC-C-EEEEE-----ECC--------CCCEEEEEECCCCCHHHHHHH-HCCCCCEEEEEEE
T ss_conf             9999998670---765--799-2-99999-----808--------825899997997999999999-6489956999999


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             13333320468837688999997769846677
Q gi|254780183|r   83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      .++.+.=  +.|    ..+|.|+.+.++....
T Consensus        77 ~v~~~~~--~~g----~~el~~~~i~il~~~~  102 (434)
T 1x54_A           77 IVKADER--APG----GAEVHVEKLEVIQAVS  102 (434)
T ss_dssp             EEEECTT--SGG----GEEEEEEEEEEEECCS
T ss_pred             EEECCCC--CCC----CEEEEHHHHHHHHHCC
T ss_conf             9988888--888----6785254655545324


No 46 
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=22.96  E-value=32  Score=14.39  Aligned_cols=12  Identities=33%  Similarity=0.747  Sum_probs=9.9

Q ss_pred             CCCCCCEEEEEE
Q ss_conf             987783799996
Q gi|254780183|r    1 MVASLNKVILIG   12 (159)
Q Consensus         1 mm~~mN~v~l~G   12 (159)
                      ||++.-+|.|||
T Consensus         2 m~~~~~~V~IIG   13 (363)
T 1c0p_A            2 MMHSQKRVVVLG   13 (363)
T ss_dssp             CCCCSCEEEEEC
T ss_pred             CCCCCCCEEEEC
T ss_conf             989999899989


No 47 
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.01  E-value=38  Score=13.99  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             43021101589877221104771599984133333204688376889999977698466
Q gi|254780183|r   54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      -+.|.+.++ +.    +.++-|++|.|.|-++...   .++...+..-+.|..|..+..
T Consensus       199 ~i~v~l~~d-Lv----d~~~pGd~V~i~GI~~~~~---~~~~~~~~~~l~a~~I~~~~~  249 (279)
T 1ltl_A          199 QITVVLEDD-LV----DTLTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLEQ  249 (279)
T ss_dssp             EEEEEEEGG-GT----TCCCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC--
T ss_pred             EEEEEEECC-CC----CCCCCCCEEEEEEEEEEEC---CCCCCCEEEEEEEEEEEEECC
T ss_conf             899999244-00----8577997479999998745---899872248999999999555


No 48 
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=21.47  E-value=37  Score=14.02  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             101589877221104771599984
Q gi|254780183|r   59 VFSEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus        59 ~~g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      ..| ++|..+++.|-.|+.|+|.-
T Consensus        18 ~lG-RLAs~vAk~ll~Gd~ViVvN   40 (145)
T 1vq8_J           18 IMG-RVASQVAEQALDGETVAVVN   40 (145)
T ss_dssp             BHH-HHHHHHHHHHHTTCCEEEEC
T ss_pred             CHH-HHHHHHHHHHCCCCEEEEEE
T ss_conf             458-88999989854899799998


No 49 
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=20.75  E-value=39  Score=13.88  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             10158987722110477159998
Q gi|254780183|r   59 VFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus        59 ~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..| ++|..++..|..|+.|+|.
T Consensus        10 ~LG-RlAs~iAk~L~~Gd~VvVv   31 (142)
T 1j3a_A           10 ILG-RLASRVAKMLLEGEEVVIV   31 (142)
T ss_dssp             BHH-HHHHHHHHHHHTTCCEEEE
T ss_pred             CHH-HHHHHHHHHHCCCCEEEEE
T ss_conf             327-8999999998089969999


No 50 
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=20.19  E-value=41  Score=13.76  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
                      +|.|.|-|-|-+-.   -..+ +  +-|-|......  .- |+ +--|+|+-+-+- .++|--+.+|..|-.-+.++|.|
T Consensus         8 ln~v~leg~i~s~~---ws~~-k--tgf~vti~q~r--~f-g~-~~ftdyyviyan-~ql~~elek~~~~~~~~~i~g~l   76 (110)
T 2hql_A            8 LNRVFLEGEIESSC---WSVK-K--TGFLVTIKQMR--FF-GE-RLFTDYYVIYAN-GQLAYELEKHTKKYKTISIEGIL   76 (110)
T ss_dssp             CEEEEEEEEEEEEE---ECTT-C--SEEEEEEEEEE--EE-TT-EEEEEEEEEEEE-HHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHE---EEEC-C--CEEEEEEEEHH--HH-CC-EEEEEEEEEEEC-CCHHHHHHHHHHHCEEEEEEEEE
T ss_conf             98998751003430---0005-7--24899994043--32-50-421068999988-82247789877540479997641


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             33332046883768899999776984667
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      ++..  ++ -.+...+.|.+..|  +.++
T Consensus        77 ~ty~--~~-ks~iwkt~i~~~ki--~npk  100 (110)
T 2hql_A           77 RTYL--ER-KSEIWKTTIEIVKI--FNPK  100 (110)
T ss_dssp             EEEE--ET-TTTEEEEEEEEEEE--CCTT
T ss_pred             EHHH--HH-HHHHHHHEEEEEEE--CCCC
T ss_conf             0577--77-66775540354440--0888


Done!