Query gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 107 out of 2718 Neff 8.4 Searched_HMMs 23785 Date Mon May 23 12:27:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780183.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1se8_A Single-strand binding p 100.0 2.6E-39 1.1E-43 253.1 11.9 113 1-116 125-237 (301) 2 3afp_A Single-stranded DNA-bin 100.0 9.7E-39 4.1E-43 249.7 11.9 110 2-112 1-111 (168) 3 1eqq_A Single stranded DNA bin 100.0 2.4E-39 9.9E-44 253.4 6.9 113 2-115 1-118 (178) 4 3eiv_A Single-stranded DNA-bin 100.0 2.2E-38 9.2E-43 247.6 11.6 107 2-109 1-108 (199) 5 1z9f_A Single-strand binding p 100.0 1.2E-37 4.9E-42 243.3 11.5 141 2-159 13-153 (153) 6 3lgj_A Single-stranded DNA-bin 100.0 3.6E-36 1.5E-40 234.4 11.4 144 3-159 21-169 (169) 7 2fxq_A Single-strand binding p 100.0 1.3E-35 5.4E-40 231.1 12.6 110 1-116 124-233 (264) 8 1qvc_A Single stranded DNA bin 100.0 1.4E-34 5.7E-39 225.0 14.3 113 2-115 2-117 (145) 9 3ull_A DNA binding protein; DN 100.0 8.7E-35 3.7E-39 226.2 10.6 116 1-116 10-130 (132) 10 2fxq_A Single-strand binding p 100.0 1.2E-33 5E-38 219.4 11.8 115 1-118 1-115 (264) 11 2vw9_A Single-stranded DNA bin 100.0 3.7E-33 1.5E-37 216.5 13.7 111 5-117 2-112 (134) 12 1se8_A Single-strand binding p 100.0 2.2E-33 9.3E-38 217.8 12.3 116 1-118 1-117 (301) 13 3k7u_C MP18 RNA editing comple 100.0 2.2E-32 9.4E-37 211.8 9.8 112 1-114 2-118 (148) 14 3k81_C MP18 RNA editing comple 100.0 1.6E-31 6.7E-36 206.8 8.2 111 2-114 19-134 (164) 15 3koj_A Uncharacterized protein 99.9 9.6E-27 4.1E-31 178.3 10.1 98 3-108 9-107 (108) 16 1v1q_A Primosomal replication 99.9 7.8E-26 3.3E-30 172.9 11.1 111 1-120 17-127 (134) 17 1txy_A Primosomal replication 99.9 6E-24 2.5E-28 161.7 8.8 102 5-113 2-103 (104) 18 3k8a_A Putative primosomal rep 99.9 5.1E-23 2.1E-27 156.1 10.7 101 1-112 3-103 (103) 19 3fhw_A Primosomal replication 99.9 3.4E-21 1.4E-25 145.3 11.0 100 5-114 1-100 (115) 20 3en2_A Probable primosomal rep 99.8 3.9E-21 1.6E-25 144.9 9.8 85 4-92 1-85 (101) 21 3f2b_A DNA-directed DNA polyme 95.5 0.13 5.5E-06 28.6 10.4 87 3-112 15-103 (1041) 22 2hpi_A DNA polymerase III alph 94.9 0.057 2.4E-06 30.8 6.0 80 6-111 1043-1122(1220) 23 2k50_A Replication factor A re 93.0 0.3 1.3E-05 26.5 6.8 68 7-90 18-89 (115) 24 1ynx_A Replication factor-A pr 89.8 0.75 3.2E-05 24.1 6.0 67 4-85 13-82 (114) 25 3m4p_A Ehasnrs, asparaginyl-tR 89.2 0.84 3.5E-05 23.8 5.9 60 53-113 59-122 (456) 26 3dm3_A Replication factor A; p 89.0 1.2 4.9E-05 23.0 8.8 83 2-111 12-98 (105) 27 3e0e_A Replication protein A; 88.5 1.2 5E-05 22.9 6.3 81 3-111 10-94 (97) 28 1o7i_A SSB, SSO2364, single st 86.6 1.2 5E-05 22.9 5.4 77 3-106 10-89 (119) 29 2wkd_A ORF34P2; SSB, engineere 85.2 0.77 3.2E-05 24.1 3.8 34 68-105 50-83 (119) 30 2pi2_A Replication protein A 3 84.3 1.7 7.3E-05 21.9 5.3 64 4-87 70-135 (270) 31 2k75_A Uncharacterized protein 81.3 2.7 0.00012 20.8 5.6 65 3-90 11-77 (106) 32 3kdf_D Replication protein A 3 78.8 3.3 0.00014 20.3 5.8 79 4-111 30-110 (132) 33 1gm5_A RECG; helicase, replica 70.2 5.5 0.00023 19.0 4.6 65 7-90 167-233 (780) 34 1wyd_A Hypothetical aspartyl-t 68.7 5.9 0.00025 18.8 8.2 83 6-114 17-99 (429) 35 1l0w_A Aspartyl-tRNA synthetas 62.4 7.9 0.00033 18.0 7.9 87 6-113 17-103 (580) 36 3i7f_A Aspartyl-tRNA synthetas 57.1 9.8 0.00041 17.5 8.6 87 6-114 63-154 (548) 37 3kf6_A Protein STN1; OB fold, 52.6 12 0.00049 17.0 9.0 79 5-112 47-128 (159) 38 2vl6_A SSO MCM N-TER, minichro 49.7 13 0.00054 16.8 4.9 51 55-110 213-265 (268) 39 1eov_A ASPRS, aspartyl-tRNA sy 48.0 14 0.00058 16.6 10.2 86 7-113 38-130 (487) 40 1c0a_A Aspartyl tRNA synthetas 44.4 16 0.00066 16.3 8.9 87 6-113 16-105 (585) 41 1wjj_A Hypothetical protein F2 43.8 16 0.00067 16.2 4.5 77 4-107 25-114 (145) 42 1jmc_A Protein (replication pr 35.9 21 0.0009 15.5 6.6 68 5-87 18-88 (246) 43 3kf8_A Protein STN1; OB fold; 25.4 32 0.0014 14.4 7.1 97 5-114 85-186 (220) 44 3nem_A Aspartyl-tRNA synthetas 24.3 34 0.0014 14.3 11.4 80 7-113 18-101 (438) 45 1x54_A Asparaginyl-tRNA synthe 23.9 35 0.0015 14.2 8.8 81 7-114 18-102 (434) 46 1c0p_A D-amino acid oxidase; a 23.0 32 0.0014 14.4 1.8 12 1-12 2-13 (363) 47 1ltl_A DNA replication initiat 22.0 38 0.0016 14.0 3.4 51 54-112 199-249 (279) 48 1vq8_J 50S ribosomal protein L 21.5 37 0.0016 14.0 1.9 23 59-82 18-40 (145) 49 1j3a_A 50S ribosomal protein L 20.8 39 0.0017 13.9 1.9 22 59-81 10-31 (142) 50 2hql_A Hypothetical protein Mg 20.2 41 0.0017 13.8 10.2 93 5-113 8-100 (110) No 1 >1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Probab=100.00 E-value=2.6e-39 Score=253.10 Aligned_cols=113 Identities=29% Similarity=0.578 Sum_probs=104.6 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |+.+||+|+|+|||++|||+|++++|.++++|+||++++|+|+. ++|++.|+||+|++||+ +|+++ +||+||++|+| T Consensus 125 m~~~~N~V~l~G~l~~dpe~r~t~~G~~~~~f~la~~~~~~~~~-g~~~~~t~~~~v~~w~~-~Ae~~-~~l~KG~~V~V 201 (301) T 1se8_A 125 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWRD-LAENM-KELRKGDPVMI 201 (301) T ss_dssp EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETH-HHHHH-TTCCTTCEEEE T ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEEECE-EEEEE-EEECCCCEEEE T ss_conf 01475189999886998679999999889999999889879899-97874318999999763-46875-11338948999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC Q ss_conf 841333332046883768899999776984667776 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS 116 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~ 116 (159) +|||++++|++++|++|+.++|+|++|.||..+... T Consensus 202 ~G~l~~~~~~~~dG~~r~~~~i~a~~v~~l~~~~~~ 237 (301) T 1se8_A 202 MGRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301) T ss_dssp EEEEEEEECC------CEEEEEEEEEEEECCC---- T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCC T ss_conf 987333365758996899999999999986577777 No 2 >3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A* Probab=100.00 E-value=9.7e-39 Score=249.73 Aligned_cols=110 Identities=25% Similarity=0.449 Sum_probs=104.0 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8778379999642588667986999869999998345642026884530-112430211015898772211047715999 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) ||+.|+|+|+|||++|||||++++|.++++|+||++++|+++.+++|++ .|+||+|++||+ +|+++++||+||++|+| T Consensus 1 Ma~~N~V~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~~g~~~~~~t~~~~v~~~g~-~Ae~~~~~~~KG~~V~V 79 (168) T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWRE-AAENVAESLTRGARVIV 79 (168) T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHH-HHHHHHHHCCTTCEEEE T ss_pred CCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHH-HHHHHHHHHCCCCEEEE T ss_conf 99768899999847698899879997899999997244331467850246507579998769-99999997179998999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 84133333204688376889999977698466 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) +|||++++|++++|++|+.++|+|+.|.++.. T Consensus 80 ~G~l~~~~~~~~~g~~~~~~~i~a~~v~~~l~ 111 (168) T 3afp_A 80 TGRLKQRSFETREGEKRTVVEVEVDEIGPSLR 111 (168) T ss_dssp EEEEEEEEEC-CCSCCEEEEEEEEEEEEECCS T ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEECCCCC T ss_conf 99865365198999889999999987414311 No 3 >1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3 Probab=100.00 E-value=2.4e-39 Score=253.37 Aligned_cols=113 Identities=56% Similarity=1.035 Sum_probs=104.3 Q ss_pred CC--CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 87--7837999964258866798699986999999834564202688453011243021101589877221104771599 Q gi|254780183|r 2 VA--SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 2 m~--~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) || +||+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|++.|+||+|+||| ++|+++++||+||++|+ T Consensus 1 m~~~~~N~v~l~G~l~~dPe~r~t~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~w~-~~Ae~~~~~l~KG~~V~ 79 (178) T 1eqq_A 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFG-KLAEVASEYLRKGSQVY 79 (178) T ss_dssp -CCCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECH-HHHHHHHHHCCTTCEEE T ss_pred CCCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCEECCCCCCCCCCEEEEEEEEC-HHHHHHHHHCCCCCEEE T ss_conf 98778758999998576988988789988999999972551004788331211589889945-02433455406999899 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEE---EEEECCCCCC Q ss_conf 98413333320468837688999997---7698466777 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRD 115 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~---~i~~l~~~~~ 115 (159) |+|+|++++|++++|++|+.++|+|+ .+.++.++.. T Consensus 80 V~G~l~~~~~~d~~G~~~~~~~i~~~~~~~l~~~~~~~~ 118 (178) T 1eqq_A 80 IEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178) T ss_dssp ECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC--- T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCC T ss_conf 998776146888899689999999941685678647666 No 4 >3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} PDB: 3a5u_A* Probab=100.00 E-value=2.2e-38 Score=247.61 Aligned_cols=107 Identities=26% Similarity=0.471 Sum_probs=102.6 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8778379999642588667986999869999998345642026884530-112430211015898772211047715999 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) ||+.|+|+|+|||++|||||++++|.+||+|+||++++|+++.+++|++ .|+||+|++|+ ++|+++++||+||++|+| T Consensus 1 Ma~~~~V~liG~l~~DPelr~t~~G~~v~~f~lA~~~~~~~~~~g~~~~~~t~~~~v~~w~-~~Ae~~~~~l~KG~~V~V 79 (199) T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWR-QAAENVAESLQRGMRVIV 79 (199) T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEET-HHHHHHHHHCCTTCEEEE T ss_pred CCCCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEECCCEEEEEEEHHH-HHHHHHHHHCCCCCEEEE T ss_conf 9987879999984759889888999889999999748703067884432520565511115-789999863589999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEE Q ss_conf 84133333204688376889999977698 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVM 109 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~ 109 (159) +|||++++|++++|++|+.++|+|++|.+ T Consensus 80 ~GrL~~~~~~dkdG~~r~~~evva~~v~~ 108 (199) T 3eiv_A 80 QGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199) T ss_dssp EEEEEEEC--------CCEEEEEEEEEEE T ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEEE T ss_conf 97977262299999889999999978100 No 5 >1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} Probab=100.00 E-value=1.2e-37 Score=243.30 Aligned_cols=141 Identities=26% Similarity=0.514 Sum_probs=115.7 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) |+.||+|+|+|||++|||+|++++|.++++|+||++++|+++ ++++.+.|+||+|++||+ +|+++++||+||++|+|+ T Consensus 13 M~~~N~v~l~G~l~~DPe~r~t~~g~~v~~f~vAv~~~~~~~-~~~~~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 90 (153) T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKN-APDDAQTTDFFRIVTFGR-LAEFARTYLTKGRLVLVE 90 (153) T ss_dssp CSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC------------CEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE T ss_pred HHHCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEECC-HHHHHHHHEECCCEEEEE T ss_conf 413888999999066988999899987999999974650257-774212102699999252-067656515589899999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 413333320468837688999997769846677766667777777766777655666666765445677877455798 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdiPF 159 (159) |+|++++|++++|++|+.++|+|++|.||..+........... ...|..........|||||| T Consensus 91 G~l~~~~~~~kdG~~r~~~~I~a~~i~~l~~k~~~~~~~~~~~---------------~~~~~~~~~~~~~~dDdiPF 153 (153) T 1z9f_A 91 GEMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAETVSETEEE---------------LEIPEEDFSSDTFSEDEPPF 153 (153) T ss_dssp EEEEEEC-------CCCEEEEEEEEEEECC------------------------------------------------ T ss_pred EEEEECCEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCC T ss_conf 9988461899999899999999969998767875665666776---------------77886666778877689998 No 6 >3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} Probab=100.00 E-value=3.6e-36 Score=234.42 Aligned_cols=144 Identities=41% Similarity=0.738 Sum_probs=111.2 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 7783799996425886679869998699999983456420268845301124-302110158987722110477159998 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) +-||+|+|+|||++|||||++++|.++++|+||++++|+++.++.|.+.+.| +.|++|+ ++|+++.++|+||++|+|+ T Consensus 21 ~mmN~v~LiGrlg~DPelr~t~sG~~v~~fsvAv~~~~~~~~~~~~~~~t~~~~~v~~~~-~~Ae~~~~~l~KG~~V~V~ 99 (169) T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNP-HFAKIALQYLHKGSKVYIE 99 (169) T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCH-HHHHHHHHHCCTTCEEEEE T ss_pred CEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEEEEC-HHHHHHHHHCCCCCEEEEE T ss_conf 644789999986779889987899879999998714410134310267851899999961-4778998650248689999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEE----EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 41333332046883768899999776----98466777666677777777667776556666667654456778774557 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSM----VMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEI 157 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDdi 157 (159) |+|++++|++++|++|+.++|+|+.+ .+++++............ +..+.+..........|||| T Consensus 100 G~l~~~~~~dkdG~~r~~~eI~a~~~~~~~~~l~~k~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~dDdi 167 (169) T 3lgj_A 100 GKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQSASSSSVTS------------QSYAIASGADDYGISAHDSM 167 (169) T ss_dssp EEEEEECC--------CEEEEEECTTCCEEEEECC--------------------------------------------- T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCEEECCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCC T ss_conf 687746788079957999999998403727887778777778888788------------88777788877788877899 Q ss_pred CC Q ss_conf 98 Q gi|254780183|r 158 PF 159 (159) Q Consensus 158 PF 159 (159) || T Consensus 168 PF 169 (169) T 3lgj_A 168 PF 169 (169) T ss_dssp -- T ss_pred CC T ss_conf 98 No 7 >2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Probab=100.00 E-value=1.3e-35 Score=231.11 Aligned_cols=110 Identities=29% Similarity=0.507 Sum_probs=99.2 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |..+||+|+|+|||++|||+|++++|.++++|+||++++|++ +++++|+||+|+|||+ +|+++ +||+||++|+| T Consensus 124 ~~~~~N~v~l~G~l~~dpe~r~t~~g~~v~~f~lA~~~~~~~----~~~~~t~~~~v~~wg~-~Ae~~-~~l~KG~~V~V 197 (264) T 2fxq_A 124 LRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRG----QEEERTHFLEVQAWRE-LAEWA-SELRKGDGLLV 197 (264) T ss_dssp -CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-----------EEEEEEEEEHH-HHHHH-TTCCTTCEEEE T ss_pred CCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCC----CCCCCEEEEEEEEECH-HHHHH-HHCCCCCEEEE T ss_conf 112245421531203484268937995399997878888478----8777448999999770-43232-11479989999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC Q ss_conf 841333332046883768899999776984667776 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS 116 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~ 116 (159) +|+|++++|++++|++|+.++|+|++|.++..+... T Consensus 198 ~G~l~~~~~~d~dG~~r~~~~i~a~~v~~l~~~~~~ 233 (264) T 2fxq_A 198 IGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264) T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEECCCC---- T ss_pred EEEEEECEEECCCCCEEEEEEEEEEEEEECCCCCCC T ss_conf 987662407999998999999999999966777765 No 8 >1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A Probab=100.00 E-value=1.4e-34 Score=225.02 Aligned_cols=113 Identities=55% Similarity=1.011 Sum_probs=104.0 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..+||+|+|+|||++|||+|++++|.++++|+||++++|++..++++++.|+||+|++||+ +|+++++||+||++|+|+ T Consensus 2 ~~~mN~v~L~G~l~~dpe~r~t~~g~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 80 (145) T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE 80 (145) T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE T ss_pred CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECH-HHHHHHHHHHCCCEEEEE T ss_conf 8750499999988879889888999889999986132210257884403304898999870-778776650058889998 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEE---EEECCCCCC Q ss_conf 4133333204688376889999977---698466777 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRS---MVMLDGRRD 115 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~---i~~l~~~~~ 115 (159) |+|++++|++++|++|+.++|+|+. |.+|.++.. T Consensus 81 G~l~~~~~~~k~G~~r~~~ei~a~~~~~l~~l~~~~~ 117 (145) T 1qvc_A 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 117 (145) T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCC T ss_pred EEEEECCCCCCCCCEEEEEEEEEECCCCEEECCCCCC T ss_conf 5885132498999989999999923784889857677 No 9 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A Probab=100.00 E-value=8.7e-35 Score=226.18 Aligned_cols=116 Identities=29% Similarity=0.610 Sum_probs=108.0 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCC-----CCEEECEEEECCCCCHHHHHHHHHHHCCCC Q ss_conf 987783799996425886679869998699999983456420268-----845301124302110158987722110477 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVT-----NERREKTEWHSVIVFSEELCRIVEQYLRKG 75 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~-----~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG 75 (159) |..+||+|+|+|||++|||+|++++|.++++|+||++++|++..+ ++|.+.|+||+|++||+.+|+++.+||+|| T Consensus 10 ~~~~mN~V~LiG~l~~dPelr~t~~G~~v~~f~lAv~~~~k~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG 89 (132) T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132) T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT T ss_pred ECCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCEECCEEECHHHHHHHHHHCCCC T ss_conf 00784099999987879889986899889999998604302676754204514540100020001202466787633799 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC Q ss_conf 15999841333332046883768899999776984667776 Q gi|254780183|r 76 SKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS 116 (159) Q Consensus 76 ~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~ 116 (159) ++|+|+|+|++++|+|++|++|+.++|+|++|.||+.+... T Consensus 90 ~~V~V~G~l~~~~w~dkdG~~r~~~~i~a~~i~~L~~~~~~ 130 (132) T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132) T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------ T ss_pred CEEEEEEEEEECEEECCCCCEEEEEEEEEEEEEECCCCCCC T ss_conf 69999999884617989998999999999699988899877 No 10 >2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Probab=100.00 E-value=1.2e-33 Score=219.40 Aligned_cols=115 Identities=30% Similarity=0.560 Sum_probs=106.3 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |+.+||+|+|+|||++|||+|++++|..+++|+||++++|+++ .++|++.+.||+|++||+ +|+++++||+||++|+| T Consensus 1 ma~~~N~V~L~G~l~~dpe~r~~~~G~~v~~f~lA~~~~~~~~-~g~~~~~~~~~~v~~~g~-~Ae~~~~~l~KG~~V~V 78 (264) T 2fxq_A 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDE-SGQEREVPWYHRVRLLGR-QAEMWGDLLEKGQLIFV 78 (264) T ss_dssp --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEEEETH-HHHHHTTTCCTTCEEEE T ss_pred CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECC-CCCEECCCEEEEEEECCH-HHHHHHHHCCCCCEEEE T ss_conf 9887619999999167987998799988999999978976989-998962568999999317-68999972779999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 84133333204688376889999977698466777666 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ 118 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~ 118 (159) +|+|++++|+ +||++|+.++|+|++|.+|+++..... T Consensus 79 ~G~l~~~~~~-~dG~~~~~~~i~a~~v~~l~~r~~~~~ 115 (264) T 2fxq_A 79 EGRLEYRQWE-KDGEKKSEVQVRAEFIDPLEGRGRETL 115 (264) T ss_dssp EEEEEEC----------CCEEEEEEEEEECCCC----- T ss_pred EEEEECCCEE-ECCEEEEEEEEEEEEEECCCCCCCCCC T ss_conf 9997738876-299199999999999981356676543 No 11 >2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} Probab=100.00 E-value=3.7e-33 Score=216.51 Aligned_cols=111 Identities=31% Similarity=0.502 Sum_probs=102.9 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) ||+|+|+|||++|||+|++++|..+++|+||++++|++ ..+++.++++||+|++||+ +|+++++||+||+.|+|+|+| T Consensus 2 ~N~v~l~G~l~~dpe~r~~~~g~~v~~f~la~~~~~~~-~~~~~~~~t~~~~v~~~g~-~ae~~~~~l~KG~~V~V~G~l 79 (134) T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKK-QDGTLGEEVCFIDARLFGR-TAEIANQYLSKGSSVLIEGRL 79 (134) T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEEEEE T ss_pred CEEEEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCC-CCCCEEEEEEEEEEEEEHH-HHHHHHHHCCCCCEEEEEEEE T ss_conf 60799999917697899978998999999998076235-7886874505886678611-443323422099699999888 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCC Q ss_conf 333320468837688999997769846677766 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSL 117 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~ 117 (159) ++++|++++|++++.++|+|++|.||+.+.... T Consensus 80 ~~~~~~~kdG~~~~~~~i~~~~i~~l~~k~~~~ 112 (134) T 2vw9_A 80 TYESWMDQTGKKNSRHTITADSLQFMDKKSDNP 112 (134) T ss_dssp EEEEEECTTSCEEEEEEEEEEEEEECCCC---- T ss_pred EECEEECCCCCEEEEEEEEEEEEEECCCCCCCC T ss_conf 855169999989999999998999855777786 No 12 >1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Probab=100.00 E-value=2.2e-33 Score=217.81 Aligned_cols=116 Identities=27% Similarity=0.457 Sum_probs=105.7 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHH-HHHCCCCCEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772-21104771599 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIV-EQYLRKGSKVY 79 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~-~~~l~KG~~V~ 79 (159) |+.+||+|+|+|||++|||+|++++|..+++|+||++++|+++. +++++.++||+|++||+ +|+++ .+||+||++|+ T Consensus 1 ma~~mN~v~l~G~l~~dpe~~~~~~g~~v~~f~lA~~~~~~~~~-g~~~~~~~~~~v~~~g~-~ae~~~~~~l~KG~~V~ 78 (301) T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGK-PAEWQAERNLKGGDAVV 78 (301) T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEE T ss_pred CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEECCEEEEEEEECH-HHHHHHHHHCCCCCEEE T ss_conf 98751499999993669889988999889999999789558799-98973347999999887-99999987256687899 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 984133333204688376889999977698466777666 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQ 118 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~ 118 (159) |+|+|++++|++++|++|+.++|+|++|.||+++..... T Consensus 79 V~G~l~~~~~~dkdG~~r~~~~i~a~~v~~l~~~~~~~~ 117 (301) T 1se8_A 79 VEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQ 117 (301) T ss_dssp EEEEEEEEEEC-----CEEEEEEEEEEEEECSSCCCEEE T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCC T ss_conf 999978512398999889999999989998158653333 No 13 >3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D Probab=99.97 E-value=2.2e-32 Score=211.84 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=101.6 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |+.+||+|+|+||| .|||+|++ +|..+++|+||++++|+++.+++|+++|+||+|+|||+.+|+++.+||+||++|+| T Consensus 2 m~~~~N~V~LiG~v-~D~e~~~~-~~~~v~~fslA~~~~~~~~~~g~~~~~t~w~~v~~~g~~~ae~~~~~l~KG~~V~V 79 (148) T 3k7u_C 2 MSKSVNSVTLVGVV-HDIQSGFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148) T ss_dssp ---CCCCEEEEEEE-EEEEEEES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE T ss_pred CCCCCEEEEEEEEC-CCCEEEEE-CCCEEEEEEEEEEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHCCCCEEEE T ss_conf 77763289999966-89705760-89808999985323247068882603442799999857999999988467999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEE-----EEEECCCCC Q ss_conf 8413333320468837688999997-----769846677 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMR-----SMVMLDGRR 114 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~-----~i~~l~~~~ 114 (159) +|+|++++|+|++|.+++.++|++. .+.++.+.. T Consensus 80 ~G~l~~~~~~D~~g~k~~~~~vi~v~~~~g~~~~~~~~~ 118 (148) T 3k7u_C 80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDR 118 (148) T ss_dssp EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEECCCCC T ss_conf 999775011848999899999999925875046505766 No 14 >3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei} Probab=99.97 E-value=1.6e-31 Score=206.75 Aligned_cols=111 Identities=21% Similarity=0.316 Sum_probs=98.2 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) +.++|+|+|+||| .|||+++. +|.+|++|+||++++|+++.+++++++|+||+|+|||+.+|+.+.+||+||++|+|+ T Consensus 19 ~rsvNkV~LiG~v-~d~e~~~~-~~~~V~~FslAt~~~~~~~~~ge~~e~Tewh~Vv~fg~~lae~~~~yl~KG~~V~Ve 96 (164) T 3k81_C 19 CKSVNSVTLVGVV-HDIQSGFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN 96 (164) T ss_dssp -CCEEEEEEEEEE-ECCCCEES-SSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC T ss_pred CCCCCEEEEEEEC-CCCCCCCC-CCCCEEEEEEECCCCEEECCCCCEEEEEEEEEEEEECHHHHHHHHHHHCCCCEEEEE T ss_conf 3774189999836-99532242-897379999850565030789741000107999998879999999870689999999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEE-EE----EEEECCCCC Q ss_conf 4133333204688376889999-97----769846677 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEII-MR----SMVMLDGRR 114 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~-a~----~i~~l~~~~ 114 (159) |+|++++|+|++|.++|+++++ +. .+.+|.+.. T Consensus 97 G~Lrtr~~~D~~g~k~~~~~~I~v~~~~g~~~~l~~~~ 134 (164) T 3k81_C 97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDR 134 (164) T ss_dssp CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC-- T ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEECCCC T ss_conf 99886757868999898989999967888077813888 No 15 >3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} Probab=99.94 E-value=9.6e-27 Score=178.29 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=89.6 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 7783799996425886679869998-699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ++||+|+|+|||++|||||+|++|. +++.|++++++.+. ++.++|++|++||+ +||.++++|+||++|+|+ T Consensus 9 s~MN~v~l~G~l~~dPElr~T~~g~~~v~~~~v~~~~~~~-------~~~~~~i~v~~wg~-~Ae~~~~~l~kG~~V~V~ 80 (108) T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSS-------KDAPARLKVVGWGA-VAQELQDRCRLNDEVVLE 80 (108) T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC------------CCEEEEEEEETH-HHHHHHHHCCTTCEEEEE T ss_pred HHCCEEEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCC-------CCCCEEEEEEEEHH-HHHHHHHHCCCCCEEEEE T ss_conf 1279999999987896799967998899999999679845-------78977999999889-999999860899999999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEE Q ss_conf 413333320468837688999997769 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMV 108 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~ 108 (159) |+|+.++|+++||++++.++|+|+.|. T Consensus 81 G~l~~~~~~~kdG~k~~~~ei~a~~i~ 107 (108) T 3koj_A 81 GRLRINSLLKPDGNREKQTELTVTRVH 107 (108) T ss_dssp EEEEEEC--------CCEEEEEEEEEE T ss_pred EEEECEEEECCCCCEEEEEEEEEEECC T ss_conf 998772889999989999999998705 No 16 >1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A Probab=99.93 E-value=7.8e-26 Score=172.88 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=93.3 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) || +|+|+|+|||++|||+|+|++|.++++|+||+++.+. ..+.+++.+.|++|++||+ +|+.+++||+||++|+| T Consensus 17 mm--~N~v~L~G~l~~dpelR~Tp~G~~v~~f~La~~s~~~--e~~~~r~~~~~i~vv~~G~-~Ae~~~~~l~KG~~V~V 91 (134) T 1v1q_A 17 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV 91 (134) T ss_dssp GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE T ss_pred CC--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCEE--CCCCEEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEE T ss_conf 31--0089999997668646799999839999998735260--5896077789999999958-99999975378999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 8413333320468837688999997769846677766667 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE 120 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~ 120 (159) +|+|.+++| ++|+.+. .|.|++|+||+++....... T Consensus 92 ~G~L~~rs~--kng~~r~--vl~a~~IefLds~~~~~a~~ 127 (134) T 1v1q_A 92 QGFISCHKA--KNGLSKM--VLHAEQIELIDSVDKLAAAL 127 (134) T ss_dssp EEEEEEECT--TTTSCEE--EEEEEEEEETTSCSCCCC-- T ss_pred EEEEEEEEC--CCCCCEE--EEEEEEEEEECCCCCCCCHH T ss_conf 999573106--4899889--99999999803787532012 No 17 >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A Probab=99.90 E-value=6e-24 Score=161.66 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=87.7 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) .|+|+|+|+|++|||+|+|++|.++++|+||+++.+ . ..+++++...|++|++||+ +|+.+++||+||++|+|+|+| T Consensus 2 ~N~v~l~G~l~~dpelR~Tp~G~~v~~f~la~~s~~-~-e~~~~r~~~~~i~~v~~g~-~Ae~~~~~l~kG~~V~V~G~L 78 (104) T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQ-E-EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITVQGFI 78 (104) T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE-E-ETTEEEEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEEEEE T ss_pred CEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE-E-CCCCEEEEEEEEEEEEECH-HHHHHHHHCCCCCEEEEEEEE T ss_conf 049999999667871889899976999999972058-4-2895698878998999929-999988754799999999998 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 33332046883768899999776984667 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) ..++| ++|+.+ +.+.|++|+||++. T Consensus 79 ~~~~~--~~g~~r--~vl~~~~ie~ldsg 103 (104) T 1txy_A 79 SCHKA--KNGLSK--MVLHAEQIELIDSG 103 (104) T ss_dssp EC----------C--CEEEEEEEEEC--- T ss_pred EEECC--CCCCCE--EEEEEEEEEEECCC T ss_conf 86225--389964--99999899993389 No 18 >3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} Probab=99.89 E-value=5.1e-23 Score=156.11 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=88.5 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) ||+++|+|+|+|+|++|||||||++|.++++|+||+++.+. ..+++++.+.|++|++||+ +||.++ ++||++|+| T Consensus 3 ~m~~~N~v~L~G~l~~~pelRyTp~G~~v~~f~La~~~~~~--~~~~~r~~~~~i~~va~G~-~Ae~~~--l~kG~~v~v 77 (103) T 3k8a_A 3 HMGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE--ENGQQCLVQLEIPARILGR-QAEEWQ--YRQGDCATV 77 (103) T ss_dssp -CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEHH-HHHHST--TCTTCEEEE T ss_pred CCCCCCEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEEHH--CCCCCCEEEEEEEEEEECH-HHHHHH--HCCCCEEEE T ss_conf 66653579999998778638899999889999999710110--1887200217999999737-634232--379999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 84133333204688376889999977698466 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) +|+|..++|.++ .+.+-+++|+++++ T Consensus 78 ~G~L~~rs~~s~------qlv~hi~~ie~~~g 103 (103) T 3k8a_A 78 EGFLAQKSRRSL------MPMLRIQNIKEYKG 103 (103) T ss_dssp EEEEEESSSSCC------CEEEEEEEEEECCC T ss_pred EEEEEECCCCCC------EEEEEEEEEEECCC T ss_conf 999772567688------05999999998579 No 19 >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Probab=99.85 E-value=3.4e-21 Score=145.29 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=86.1 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) ||+|+|+|+|++||+||||++|.++++|+||+++.+ . ..+++++.+.|++|++||+ +||.++ +|+||+.|.|+|+| T Consensus 1 mN~v~L~G~l~~~~~lRyTPsG~~V~~f~Lah~s~~-~-e~g~~r~~~~~i~vva~G~-~Ae~~~-~l~kG~~v~v~G~L 76 (115) T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEV-V-EAGHPRRVELTISAVALGD-LALLLA-DTPLGTEMQVQGFL 76 (115) T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEC-C-CCC--CEEEEEEEEEEETH-HHHHHT-TCCTTCEEEEEEEE T ss_pred CCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEE-E-CCCCCCCEEEEEEEEEEHH-HHHHHH-HCCCCCEEEEEEEE T ss_conf 978999999876863889899977899999932012-0-4887353449999999948-823204-13799999999996 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 333320468837688999997769846677 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) ..++|..+ .+.+-+++|+++.++. T Consensus 77 ~~rs~~s~------~lvlHi~~iq~i~g~~ 100 (115) T 3fhw_A 77 APARKDSV------KVKLHLQQARRIAGSM 100 (115) T ss_dssp EESSTTCS------SEEEEEEEEEECCCSC T ss_pred CCCCCCCC------CEEEEEEEEEEECCCC T ss_conf 52668898------3699989999926888 No 20 >3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} Probab=99.85 E-value=3.9e-21 Score=144.92 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=76.0 Q ss_pred CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 78379999642588667986999869999998345642026884530112430211015898772211047715999841 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Gr 83 (159) |||+|+|+|+|++|||||+|++|.++++|+||+++.+. ..+.+++.+.|++|++||+ +|+.+++ |+||+.|+|+|+ T Consensus 1 ~mN~v~L~G~l~~~pelRyTpsG~~v~~f~la~~~~~~--e~g~~r~~~~~i~vv~~G~-~Ae~~~~-l~kG~~v~v~G~ 76 (101) T 3en2_A 1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAM--EAQAARQVEFSIEALGAGK-MASVLDR-IAPGTVLECVGF 76 (101) T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEE--CC--EEEEEEEEEEEEETH-HHHHHTT-SCTTCEEEEEEE T ss_pred CCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEE--CCCCCEEEEEEEEEEEEHH-HHHHHHH-CCCCCEEEEEEE T ss_conf 93199999998778746899999789999999852380--5997105779999999908-9576664-589999999999 Q ss_pred CCCCCCCCC Q ss_conf 333332046 Q gi|254780183|r 84 LQTRKWQDQ 92 (159) Q Consensus 84 l~~~~~~~k 92 (159) |.+++|.++ T Consensus 77 L~~rs~~~~ 85 (101) T 3en2_A 77 LARKHRSSK 85 (101) T ss_dssp EEECC---- T ss_pred EEECCCCCC T ss_conf 972675389 No 21 >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Probab=95.45 E-value=0.13 Score=28.61 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=61.1 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH--HHHHHHHHHCCCCCEEEE Q ss_conf 778379999642588667986999869999998345642026884530112430211015--898772211047715999 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE--ELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~--~~Ae~~~~~l~KG~~V~V 80 (159) ..+++|++-|.|-. .|.|.+.+|+.+.+|.|. |.|+=+.|+.|-+ ...+.+ ..++||+-|.| T Consensus 15 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~--------------d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (1041) T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--------------DYTNSILVKMFSRDKEDAELM-SGVKKGMWVKV 78 (1041) T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--------------CSSCEEEEEEECSSHHHHHHH-HTCCTTCEEEE T ss_pred CCCCEEEEEEEEEE-EEEEEECCCCEEEEEEEE--------------ECCCCEEEEEECCCCCHHHHH-HCCCCCCEEEE T ss_conf 73666999999998-776860489889999998--------------268868999955874408898-40679968999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 84133333204688376889999977698466 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) .|.+..++|. + .+.+.+..+..+.. T Consensus 79 ~g~~~~~~~~-~------~~~~~~~~~~~~~~ 103 (1041) T 3f2b_A 79 RGSVQNDTFV-R------DLVIIANDLNEIAA 103 (1041) T ss_dssp EEEEEEETTT-T------EEEEEEEEEEEECC T ss_pred EEEEECCCCC-C------CEEEEEEEEEECCC T ss_conf 9988515777-7------41797101365577 No 22 >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Probab=94.86 E-value=0.057 Score=30.78 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=56.1 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) ..|.+.|-|.. ...+.|.+|..++-++| .|.+.-+.|++|.+.+ +.....|+.|..|+|+|++. T Consensus 1043 ~~v~vaG~I~~-v~~~~TKkG~~maf~tl--------------eD~tG~iev~vF~~~y-~~~~~~L~~~~~l~v~G~v~ 1106 (1220) T 2hpi_A 1043 PKVLLSGMVEE-VVRKPTRSGGMMARFTL--------------SDETGALEVVVFGRAY-EGVSPKLKEDIPLLVLAEVE 1106 (1220) T ss_dssp CEEEEEEEECC-C------------CEEE--------------EETTEEEEEC--------------CTTCEEEEEEEEC T ss_pred CEEEEEEEEEE-EEECCCCCCCEEEEEEE--------------EECCCCEEEEECHHHH-HHHHHHHCCCCEEEEEEEEE T ss_conf 88999999978-89732799996999999--------------9899988999837999-99988753598799999999 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 33320468837688999997769846 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) . .+| +.|+|++|.-|+ T Consensus 1107 ~-----~~~-----~~i~~~~i~~L~ 1122 (1220) T 2hpi_A 1107 K-----GEE-----LRVLAQAVWTLE 1122 (1220) T ss_dssp ---------------CEEEEEEEEHH T ss_pred E-----CCC-----EEEEEEECCCHH T ss_conf 8-----994-----489983515599 No 23 >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Probab=93.00 E-value=0.3 Score=26.47 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=46.7 Q ss_pred EEEEEEEECCCCEEEEC--CCCC--EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 79999642588667986--9998--6999999834564202688453011243021101589877221104771599984 Q gi|254780183|r 7 KVILIGNLGADPDVRHT--QDGR--KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~--~~g~--~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) .+.|+|++.+-.++|.. .+|. .+.++.|+ |.|.-++|++|++ .|+... .|+.|+.|.|.| T Consensus 18 ~v~v~g~V~~~~~~r~~~~k~G~~~~~~~i~l~--------------D~TG~I~vt~W~~-~~~~~~-~l~~Gdvv~i~~ 81 (115) T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIA--------------DDTGELRAVFWTE-NIKLLK-KFREGDVIRIKD 81 (115) T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE--------------ETTEEEEEEEETT-GGGGGG-TCCTTSEEEEEE T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEE--------------CCCCEEEEEEEHH-HHHHHC-CCCCCCEEEEEC T ss_conf 767999999856976899179989689999998--------------4999799999502-213442-699999999970 Q ss_pred CCCCCCCC Q ss_conf 13333320 Q gi|254780183|r 83 SLQTRKWQ 90 (159) Q Consensus 83 rl~~~~~~ 90 (159) --..+.|. T Consensus 82 ~~vk~~~~ 89 (115) T 2k50_A 82 VNIRGGFG 89 (115) T ss_dssp EEECCCSS T ss_pred CEECCCCC T ss_conf 09882359 No 24 >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Probab=89.76 E-value=0.75 Score=24.11 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=48.2 Q ss_pred CCCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 7837999964258866798699--9-869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQD--G-RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~--g-~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) .+++.+|.||+.+--++|.+.+ | ..+..|.|+ |. ... +.|++|++ +++.....|+.|.-.++ T Consensus 13 ~~~~w~I~~RV~~k~~~~~~~~~~~~g~v~~~~l~------De-------~G~-I~~~~~~~-~~~~~~~~L~~G~vy~i 77 (114) T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL------DT-------SGE-IRATAFND-FATKFNEILQEGKVYYV 77 (114) T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE------ET-------TEE-EEEEECHH-HHHHHHHHSCSSSEEEE T ss_pred CCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEE------CC-------CCC-EEEEEECH-HHCCHHHHEECCCEEEE T ss_conf 99967999999882156036558996449999999------18-------998-99999121-20121310215879999 Q ss_pred EECCC Q ss_conf 84133 Q gi|254780183|r 81 EGSLQ 85 (159) Q Consensus 81 ~Grl~ 85 (159) .+=.. T Consensus 78 ~~f~V 82 (114) T 1ynx_A 78 SKAKL 82 (114) T ss_dssp ESCEE T ss_pred ECEEE T ss_conf 33099 No 25 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Probab=89.24 E-value=0.84 Score=23.83 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=38.7 Q ss_pred EEECCCCCHHHHH--HHHHHHCCCCCEEEEEECCCCCCCCCCCCC--EEEEEEEEEEEEEECCCC Q ss_conf 2430211015898--772211047715999841333332046883--768899999776984667 Q gi|254780183|r 53 EWHSVIVFSEELC--RIVEQYLRKGSKVYIEGSLQTRKWQDQSGN--NRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 53 ~~~~v~~~g~~~A--e~~~~~l~KG~~V~V~Grl~~~~~~~kdG~--~r~~~~V~a~~i~~l~~~ 113 (159) ..+.|++..+... +.+ +.+++|+.|.|.|.+..+...++... ....++|.|..+.+|... T Consensus 59 g~iQvv~~~~~~~~~~~~-~~l~~e~~v~v~G~v~~~~~~~~~~~~~~~~~~ei~~~~~~vl~~~ 122 (456) T 3m4p_A 59 GYCQCVIFGKELCEPEKV-KLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456) T ss_dssp CEEEEEEESTTTTCHHHH-TTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC T ss_pred CCEEEEEECCCCCCHHHH-HCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCC T ss_conf 768999948877889999-6088840999999998344877788665534799999999972678 No 26 >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Probab=88.99 E-value=1.2 Score=23.00 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=52.0 Q ss_pred CCCCCEEEEEEEECCCCEEEEC--CCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCE Q ss_conf 8778379999642588667986--99986--9999998345642026884530112430211015898772211047715 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHT--QDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSK 77 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~--~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~ 77 (159) ...|+ |.|.|++.+-.+.|.. .+|.. +.++.|+ |.|.=+++++|+.+ ++ ..++.|+- T Consensus 12 ~~g~~-v~v~g~V~~~~~~r~~~~~~G~~~~~~~~~i~--------------D~tg~i~~t~W~~~-~~---~~~~~G~v 72 (105) T 3dm3_A 12 SPGMT-ATFEGEVISALPIKEFKRADGSIGKLKSFIVR--------------DETGSIRVTLWDNL-TD---IDVGRGDY 72 (105) T ss_dssp CSSEE-EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE--------------ETTEEEEEEEEGGG-GG---SCCCTTCE T ss_pred CCCCE-EEEEEEEEECCCCEEEECCCCCEEEEEEEEEE--------------CCCCCEEEEEECCC-CC---CCCCCCCE T ss_conf 99987-89999999925877988589988899999999--------------29993999997601-02---55899999 Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 9998413333320468837688999997769846 Q gi|254780183|r 78 VYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 78 V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) |.+.|. ..+.|. |. .++.+.+...++ T Consensus 73 v~i~g~-~v~~~~---g~----~~l~~~~~~~i~ 98 (105) T 3dm3_A 73 VRVRGY-IREGYY---GG----LECTANYVEILK 98 (105) T ss_dssp EEEEEE-EEECTT---SS----EEEEEEEEEEEE T ss_pred EEEEEE-EEECCC---CC----EEEEECCCEEEC T ss_conf 999869-971458---90----899979966981 No 27 >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Probab=88.47 E-value=1.2 Score=22.91 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=49.6 Q ss_pred CCCCEEEEEEEECCCCEEEEC--CCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEE Q ss_conf 778379999642588667986--99986--99999983456420268845301124302110158987722110477159 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHT--QDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKV 78 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~--~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V 78 (159) ..+| ++|.|++.+--+.|.. .+|.. +.++.| .|.|..+++++|++. ++ ..++.|+.| T Consensus 10 ~g~~-v~i~g~V~~~~~~r~~~~k~g~~~~v~~~~i--------------~D~TG~i~~~~W~~~-~~---~~~~~g~~v 70 (97) T 3e0e_A 10 PNLS-GTINAEVVTAYPKKEFSRKDGTKGQLKSLFL--------------KDDTGSIRGTLWNEL-AD---FEVKKGDIA 70 (97) T ss_dssp TTEE-EEEEEEEEEECCCEEEC----CCEEEEEEEE--------------EETTEEEEEEEEGGG-GG---CCCCTTCEE T ss_pred CCCE-EEEEEEEEECCCCEEEECCCCCEEEEEEEEE--------------ECCCCCEEEEEECHH-HH---HCCCCCCEE T ss_conf 9983-8899999981475798847997308999999--------------849980999996845-73---162689799 Q ss_pred EEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 998413333320468837688999997769846 Q gi|254780183|r 79 YIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 79 ~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) .|.|..+ .|. .| +++.......++ T Consensus 71 ~v~g~v~--~~~--~~-----~el~~~~~~~I~ 94 (97) T 3e0e_A 71 EVSGYVK--QGY--SG-----LEISVDNIGIIE 94 (97) T ss_dssp EEEEEEE--EC----C-----EEEEEEEEEEEE T ss_pred EEEEEEE--ECC--CE-----EEEEECCCEEEE T ss_conf 9999999--649--82-----899949951898 No 28 >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Probab=86.63 E-value=1.2 Score=22.93 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=49.2 Q ss_pred CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 7783799996425886679869--998-6999999834564202688453011243021101589877221104771599 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) ..|+.|.|.|++.+-.+.|.+. +|. .++++.|+ |.|..+++++|++. ++ .+..|+.|. T Consensus 10 p~~~~v~i~~~V~~~~~~r~~~~k~g~~~v~~~~i~--------------D~TG~i~~tlW~~~-~~----~i~~Gd~v~ 70 (119) T 1o7i_A 10 PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--------------DETGRVKLTLWGKH-AG----SIKEGQVVK 70 (119) T ss_dssp TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--------------ETTEEEEEEEEGGG-TT----CCCTTCEEE T ss_pred CCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEE--------------CCCCEEEEEEECCC-CC----CCCCCCEEE T ss_conf 999878999999988787168738998899999998--------------69987999880575-34----489999999 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 984133333204688376889999977 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRS 106 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~ 106 (159) |.+-- .+.|. | .+++.+.. T Consensus 71 i~~~~-v~~~~---g----~~~l~~~~ 89 (119) T 1o7i_A 71 IENAW-TTAFK---G----QVQLNAGS 89 (119) T ss_dssp EEEEE-EEEET---T----EEEEEECT T ss_pred EEEEE-EEEEC---C----EEEEEECC T ss_conf 94559-99979---9----79999899 No 29 >2wkd_A ORF34P2; SSB, engineered protein, lactococcal phage protein, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A Probab=85.25 E-value=0.77 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.7 Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEE Q ss_conf 22110477159998413333320468837688999997 Q gi|254780183|r 68 VEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMR 105 (159) Q Consensus 68 ~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~ 105 (159) +..++.=|+.|.|.||++... +|++.+.--+.+. T Consensus 50 lpd~v~~GDivTvsgri~ake----~G~y~nyNfvfpt 83 (119) T 2wkd_A 50 MPDFIQMGDTVTVSGRVQAKE----SGEYVNYNFVFPT 83 (119) T ss_dssp CCTTCCTTCEEEEEEEEEEC----------CEEEEEEE T ss_pred CCCCCCCCCEEEEEEEEEEEC----CCCEEEEEEECCE T ss_conf 255111374799851254302----5734752265032 No 30 >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Probab=84.25 E-value=1.7 Score=21.94 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=39.3 Q ss_pred CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHH-HHHHHHHHHCCCCCEEEEE Q ss_conf 78379999642588667986999869999998345642026884530112-430211015-8987722110477159998 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSE-ELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~-~~Ae~~~~~l~KG~~V~V~ 81 (159) .+++|+|+|.|.+ +...+ ..+.|+| .|.|- -+.|++|-+ ...+.....++-|+.|-|. T Consensus 70 ~v~~V~iVG~V~~---v~~~~---t~~~y~i--------------dDgTG~~i~~~~w~~~~~~~~~~~~i~~g~yVrV~ 129 (270) T 2pi2_A 70 EISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA 129 (270) T ss_dssp EESEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEECC-------CCCCCTTCEEEEE T ss_pred EEEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE T ss_conf 9899999999968---88568---6789999--------------87998827999963788764335524479889999 Q ss_pred ECCCCC Q ss_conf 413333 Q gi|254780183|r 82 GSLQTR 87 (159) Q Consensus 82 Grl~~~ 87 (159) |+|+.- T Consensus 130 G~lk~f 135 (270) T 2pi2_A 130 GHLRSF 135 (270) T ss_dssp EEEEEE T ss_pred EEECCC T ss_conf 997233 No 31 >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Probab=81.31 E-value=2.7 Score=20.77 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=41.8 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCE--EEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 77837999964258866798699986--9999998345642026884530112430211015898772211047715999 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRK--IVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~--v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) .+|..|.|+|++..=-+..++.+|.. ++++.|| |.|.-+++++|++ .+..|+.|.+ T Consensus 11 ~~~~~V~i~gkV~~i~~r~~~kdG~~~~v~~~~i~--------------D~TG~ir~t~W~~--------~i~~Gd~v~i 68 (106) T 2k75_A 11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE--------------DDTARIRISSFGK--------QLQDSDVVRI 68 (106) T ss_dssp TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE--------------CSSCEEEEEEESS--------CCCTTEEEEE T ss_pred CCCCCEEEEEEEEEECCCEEEECCCEEEEEEEEEE--------------CCCCEEEEEEECC--------CCCCCCEEEE T ss_conf 89995799999959536789969976899999998--------------8997899999699--------8899989999 Q ss_pred EECCCCCCCC Q ss_conf 8413333320 Q gi|254780183|r 81 EGSLQTRKWQ 90 (159) Q Consensus 81 ~Grl~~~~~~ 90 (159) .|--.. .|. T Consensus 69 ~~a~v~-~~~ 77 (106) T 2k75_A 69 DNARVA-QFN 77 (106) T ss_dssp EEEEEE-EET T ss_pred EEEEEE-EEC T ss_conf 008998-769 No 32 >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B Probab=78.81 E-value=3.3 Score=20.28 Aligned_cols=79 Identities=11% Similarity=0.225 Sum_probs=45.8 Q ss_pred CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHHHH-HHHHHHHCCCCCEEEEE Q ss_conf 783799996425886679869998699999983456420268845301124-3021101589-87722110477159998 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSEEL-CRIVEQYLRKGSKVYIE 81 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~~~-Ae~~~~~l~KG~~V~V~ 81 (159) .+++|.|+|.+.+ +...+ ....|.| .|.|-. +.|..|-... ...-...++-|+.|-|. T Consensus 30 ~v~~V~iVG~V~~---v~~~~---t~~~y~I--------------dDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~ 89 (132) T 3kdf_D 30 EISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA 89 (132) T ss_dssp ECCEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEEC---------CCCCTTCEEEEE T ss_pred EEEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE T ss_conf 9999999999999---99879---7899999--------------88999948999977877563325405479999999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 413333320468837688999997769846 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) |+|+. | +|++ .|.+..|..+. T Consensus 90 G~lk~--~---~~~~----~I~~~~i~~v~ 110 (132) T 3kdf_D 90 GHLRS--F---QNKK----SLVAFKIMPLE 110 (132) T ss_dssp EEEEE--E---TTEE----EEEEEEEEECS T ss_pred EEEEE--E---CCEE----EEEEEEEEEEC T ss_conf 99953--0---9858----99999999927 No 33 >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Probab=70.23 E-value=5.5 Score=18.96 Aligned_cols=65 Identities=18% Similarity=0.410 Sum_probs=38.1 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCC--CCEEEEEECC Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047--7159998413 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRK--GSKVYIEGSL 84 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~K--G~~V~V~Grl 84 (159) .+++.|.|.+- +.+.+. +..+..+.+ .| .+..+.|+.|+. .++.+++++ |..|+|.|++ T Consensus 167 ~~ti~g~I~~~-~~~~~~-~~~~~~~~~------~D--------~tg~i~l~fFn~---~~~~~~lk~~~G~~v~v~Gkv 227 (780) T 1gm5_A 167 KVTTQGKIVSV-ETKKFQ-NMNILTAVL------SD--------GLVHVPLKWFNQ---DYLQTYLKQLTGKEVFVTGTV 227 (780) T ss_dssp CCEEEECCCCC-EEEECS-SCEEEEEEE------CC--------SSCCEEEEECSC---CTTHHHHHTTCSSCEEEEEEE T ss_pred EEEEEEEEEEE-ECCCCC-CCEEEEEEE------EE--------CCEEEEEEEECC---HHHHHHHHHCCCCEEEEEEEE T ss_conf 69999999985-456689-973699999------98--------988999999596---899986634589989999999 Q ss_pred CCCCCC Q ss_conf 333320 Q gi|254780183|r 85 QTRKWQ 90 (159) Q Consensus 85 ~~~~~~ 90 (159) +...|. T Consensus 228 k~~~~~ 233 (780) T 1gm5_A 228 KSNAYT 233 (780) T ss_dssp CSCCTT T ss_pred EECCCC T ss_conf 975857 No 34 >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} Probab=68.72 E-value=5.9 Score=18.77 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=47.8 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) .+|+|.|+|.+ +|. .|+ + .|-.- +| .+..+.|++-.+.........|..|+-|.|.|.+. T Consensus 17 ~~V~v~Gwv~~---~R~--~gk-~-~Fi~l-----rD--------~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~ 76 (429) T 1wyd_A 17 KEVIWAGWVHL---LRD--LGG-K-KFIIL-----RD--------KTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVK 76 (429) T ss_dssp CEEEEEEEEEE---EEE--ETT-E-EEEEE-----EE--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE T ss_pred CEEEEEEEEEE---EEC--CCC-C-EEEEE-----EE--------CCCCEEEEEECCCCHHHHHHCCCCCEEEEEEEEEE T ss_conf 98999999898---987--898-0-99999-----93--------88158999948930078994589954999997997 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 33320468837688999997769846677 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) ... .|+. ..++.+..+.++.... T Consensus 77 ~~~----~~~~--~~e~~~~~i~~l~~~~ 99 (429) T 1wyd_A 77 ADK----RAPR--GIELHAEEITLLSKAK 99 (429) T ss_dssp ECS----SSGG--GEEEEEEEEEEEECCC T ss_pred CCC----CCCC--CEEEEEECCEEECCCC T ss_conf 888----8987--6699741002302445 No 35 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Probab=62.36 E-value=7.9 Score=18.03 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=48.7 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) .+|+|.|+|-+ +|. .|+ + .|-.-. | .+..+.|++-....+....+.+..|+.|.|.|.+. T Consensus 17 ~~V~v~Gwv~~---~R~--~g~-l-~Fi~l~-----D--------~s~~lQvv~~~~~~~~~~~~~l~~~s~v~v~G~v~ 76 (580) T 1l0w_A 17 EEVVLEGWVNR---RRD--LGG-L-IFLDLR-----D--------REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVR 76 (580) T ss_dssp CEEEEEEEEEE---EEE--CSS-C-EEEEEE-----E--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE T ss_pred CEEEEEEEEEE---EEC--CCC-C-EEEEEE-----E--------CCEEEEEEEECCCHHHHHHHCCCCCCEEEEEEEEE T ss_conf 98999999770---884--898-3-999999-----7--------98879999968842289996599987899999999 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 3332046883768899999776984667 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) .+....... +...++|.|+.+.+|... T Consensus 77 ~~~~~~~~~-~~g~~El~v~~i~vl~~~ 103 (580) T 1l0w_A 77 LRPEPNPRL-ATGRVEVELSALEVLAEA 103 (580) T ss_dssp ECSSCCTTS-TTTTEEEEEEEEEEEECC T ss_pred ECCCCCCCC-CCCEEEEEEEEEEEEECC T ss_conf 178768868-887399999999998755 No 36 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Probab=57.10 E-value=9.8 Score=17.48 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=51.0 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCC-----HHHHHHHHHHHCCCCCEEEE Q ss_conf 3799996425886679869998699999983456420268845301124302110-----15898772211047715999 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF-----SEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~-----g~~~Ae~~~~~l~KG~~V~V 80 (159) .+|+|.|+|-+ +|. .|+ ++ |-.-- | .+.-+.|++. .+.+-+.+ +.++.|+.|-| T Consensus 63 ~~V~v~GrV~~---~R~--~Gk-~~-Fl~Lr-----D--------~~g~iQ~v~~~~~~~~~~~~~~~-~~l~~esvv~V 121 (548) T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MV-FLFLR-----K--------GIYTCQALVMKSETISKEFVQFC-QKISAESICDI 121 (548) T ss_dssp CEEEEEEEEEE---EEE--CSS-EE-EEEEE-----E--------TTEEEEEEEECSSSSCHHHHHHH-HTCCTTEEEEE T ss_pred CEEEEEEEEEE---EEC--CCC-EE-EEEEE-----E--------CCCCEEEEEECCCCCCHHHHHHH-HCCCCCCEEEE T ss_conf 98999899887---875--898-59-99997-----1--------87118999978988759999999-65998648999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 8413333320468837688999997769846677 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) +|.++.+.-.. ...+...++|.|++|.+|.... T Consensus 122 ~G~V~~~~~~~-~~~~~g~iEi~v~~i~vls~a~ 154 (548) T 3i7f_A 122 TGIVKAVEKPI-EKATQQDVEIHVTSIAVVSLAE 154 (548) T ss_dssp EEEEEECSSCC-TTSSSCSEEEEEEEEEEEECCC T ss_pred EEEEECCCCCC-CCCCCCCEEEEEEEEEEEECCC T ss_conf 98997468876-7689986799997999986467 No 37 >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Probab=52.57 E-value=12 Score=17.04 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=46.1 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHH--HHHHHHCCCCCEEEEE Q ss_conf 8379999642588667986999869999998345642026884530112-430211015898--7722110477159998 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELC--RIVEQYLRKGSKVYIE 81 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~A--e~~~~~l~KG~~V~V~ 81 (159) +++|.|+|.|.+ +....+ .+.|+| +|.|. -+.|++|-.... .....-+.-|+.|-|. T Consensus 47 I~~V~ivG~Vvs---v~~~~~---~~~y~I--------------DDgTG~~I~~~~w~~~~~~~~~~~~~i~~G~~VrV~ 106 (159) T 3kf6_A 47 IRWIQIVGYIAA---IDIYEG---KHVLTV--------------DDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVF 106 (159) T ss_dssp ECEEEEEEEEEE---EEEETT---EEEEEE--------------ECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEE T ss_pred EEEEEEEEEEEE---EEEECC---EEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE T ss_conf 899999999999---999456---699999--------------889999179999886774445435558989599999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 4133333204688376889999977698466 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) |+|+. |. |.+ .|.|..+..+.. T Consensus 107 G~l~~--f~---~~r----qi~~~~i~~v~D 128 (159) T 3kf6_A 107 GKINS--FR---SEV----ELIAQSFEELRD 128 (159) T ss_dssp EEEEC--SS---SSC----EEEEEEEEEECS T ss_pred EEEEE--CC---CEE----EEEEEEEEECCC T ss_conf 99966--19---888----999999999098 No 38 >2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} Probab=49.68 E-value=13 Score=16.76 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=33.8 Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CEEEEEEEEEEEEEEC Q ss_conf 3021101589877221104771599984133333204688--3768899999776984 Q gi|254780183|r 55 HSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSG--NNRYTTEIIMRSMVML 110 (159) Q Consensus 55 ~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG--~~r~~~~V~a~~i~~l 110 (159) +.|.+.++ +. +.++-|++|.|.|-++...|..... ...+.+-|.|.+|+.. T Consensus 213 i~v~l~~d-Lv----d~~~pGd~V~i~Gil~~~~~~~~~~~~~~~~~~~l~a~~Ie~~ 265 (268) T 2vl6_A 213 LEIILEDD-LV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVS 265 (268) T ss_dssp EEEEEEGG-GT----TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC T ss_pred EEEEEECC-CC----CCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEE T ss_conf 99999667-33----8417999999999998760576667885158999999999993 No 39 >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Probab=48.01 E-value=14 Score=16.60 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=48.6 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCH-------HHHHHHHHHHCCCCCEEE Q ss_conf 7999964258866798699986999999834564202688453011243021101-------589877221104771599 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFS-------EELCRIVEQYLRKGSKVY 79 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g-------~~~Ae~~~~~l~KG~~V~ 79 (159) +|+|.|+|.+ +|. .|+.++=+.| . | .+..+.|++-. ..+-+.+ ..|..|+.|. T Consensus 38 ~V~v~G~V~~---~R~--~Gk~l~Fi~L-r-----D--------~~g~iQvv~~~~~~~~~~~~~~~~~-~~l~~~~~v~ 97 (487) T 1eov_A 38 EVLFRARVHN---TRQ--QGATLAFLTL-R-----Q--------QASLIQGLVKANKEGTISKNMVKWA-GSLNLESIVL 97 (487) T ss_dssp EEEEEEEEEE---EEE--CSSSEEEEEE-E-----E--------TTEEEEEEEECCSSSSSCHHHHHHH-TTCCTTCEEE T ss_pred EEEEEEEEEC---CCC--CCCCCEEEEE-E-----E--------CCEEEEEEEECCCCCCCCHHHHHHH-CCCCCCEEEE T ss_conf 9999998811---014--8998888999-8-----6--------9887999997886664279999997-0899854999 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 9841333332046883768899999776984667 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) |.|.+....-....+ ....++|.+..+.+|... T Consensus 98 v~G~v~~~~~~~~~~-~~~~~ei~~~~i~~l~~~ 130 (487) T 1eov_A 98 VRGIVKKVDEPIKSA-TVQNLEIHITKIYTISET 130 (487) T ss_dssp EEEEEEECSSCCTTS-SEEEEEEEEEEEEEEECC T ss_pred EEEEEEECCCCCCCC-CCCEEEEEEEEEEEECCC T ss_conf 998999478887789-863399999999995168 No 40 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Probab=44.37 E-value=16 Score=16.26 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=48.4 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHH--HHHHHCCCCCEEEEEEC Q ss_conf 3799996425886679869998699999983456420268845301124302110158987--72211047715999841 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCR--IVEQYLRKGSKVYIEGS 83 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae--~~~~~l~KG~~V~V~Gr 83 (159) ..|+|.|+|-+ +|.. |+ + .|-.- +| .+.-+.|++=.+. ++ .....|..|+.|.|+|. T Consensus 16 ~~V~v~Gwv~~---~R~~--gk-l-~Fi~l-----rD--------~s~~iQvv~~~~~-~~~~~~~~~l~~~s~v~v~G~ 74 (585) T 1c0a_A 16 QQVTLCGWVNR---RRDL--GS-L-IFIDM-----RD--------REGIVQVFFDPDR-ADALKLASELRNEFCIQVTGT 74 (585) T ss_dssp CEEEEEEEEEE---EEEC--SS-C-EEEEE-----EE--------TTEEEEEEECGGG-HHHHHHHTTCCTTCEEEEEEE T ss_pred CEEEEEEEEEE---EECC--CC-C-EEEEE-----EE--------CCEEEEEEEECCC-CCHHHHHHCCCCCCEEEEEEE T ss_conf 98999997440---8858--99-6-99999-----95--------9878999997984-319999844999758999989 Q ss_pred CCCCCCCCCCCC-EEEEEEEEEEEEEECCCC Q ss_conf 333332046883-768899999776984667 Q gi|254780183|r 84 LQTRKWQDQSGN-NRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 84 l~~~~~~~kdG~-~r~~~~V~a~~i~~l~~~ 113 (159) ++.+.-...+.. ....++|.|+.+.+|... T Consensus 75 v~~~~~~~~~~~~~~ge~ei~~~~l~~l~~~ 105 (585) T 1c0a_A 75 VRARDEKNINRDMATGEIEVLASSLTIINRA 105 (585) T ss_dssp EEECCTTTCCTTSTTTTEEEEEEEEEEEECC T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEEEECCC T ss_conf 9905876767777887289999699995068 No 41 >1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Probab=43.84 E-value=16 Score=16.22 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=44.4 Q ss_pred CCCEEEEEEEECCCCEEEECCC-------------CCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHH Q ss_conf 7837999964258866798699-------------986999999834564202688453011243021101589877221 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQD-------------GRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQ 70 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~-------------g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~ 70 (159) .|+.|.|.+++..--+.+.+.. ...++.+.|+ |.|--+++++|++ .++ T Consensus 25 ~~~~vnl~~kVl~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~v~--------------DeTG~i~~tlW~~-~~~---- 85 (145) T 1wjj_A 25 GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG--------------DETGCILFTARND-QVD---- 85 (145) T ss_dssp TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE--------------CSSCEEEEEECTT-HHH---- T ss_pred CCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEE--------------CCCCEEEEEEEEC-CCC---- T ss_conf 999807999998731436741456422210135887479999997--------------5887799999612-201---- Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEE Q ss_conf 1047715999841333332046883768899999776 Q gi|254780183|r 71 YLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM 107 (159) Q Consensus 71 ~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i 107 (159) .++.|+.|.|.+-.. +.|. | .++|.+.+. T Consensus 86 ~~~~Gdvv~i~n~~v-~~~~---g----~~~L~~g~~ 114 (145) T 1wjj_A 86 LMKPGATVILRNSRI-DMFK---G----TMRLGVDKW 114 (145) T ss_dssp HTCTTCEEEEEEEEE-EEET---T----EEEEEECTT T ss_pred CCCCCCEEEEEEEEE-EEEC---C----EEEEEECCC T ss_conf 257899999964899-9778---9----799997998 No 42 >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Probab=35.86 E-value=21 Score=15.46 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=46.8 Q ss_pred CCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 83799996425886679869--998-699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) +.+..|.|++.+--++|.+. +|. .+.++.|+ |.. .. ++|++|++ +++.....|+.|+-+.+. T Consensus 18 ~~~~~I~~rV~~k~~~r~f~~~~~~~~v~~~~l~------D~~-------G~-I~~~~~~~-~~~~~~~~l~eG~vy~i~ 82 (246) T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DES-------GE-IRATAFNE-QVDKFFPLIEVNKVYYFS 82 (246) T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CSS-------CE-EEEEEEHH-HHHHHGGGCCTTCEEEEE T ss_pred CCCEEEEEEEEEECCCEEEECCCCCEEEEEEEEE------CCC-------CC-EEEEECCC-CHHHHHHHCCCCCEEEEC T ss_conf 9868999999971353587669996389999998------799-------97-99997554-301000010046399988 Q ss_pred ECCCCC Q ss_conf 413333 Q gi|254780183|r 82 GSLQTR 87 (159) Q Consensus 82 Grl~~~ 87 (159) +-.... T Consensus 83 ~~~V~~ 88 (246) T 1jmc_A 83 KGTLKI 88 (246) T ss_dssp CCEEEE T ss_pred CCEEEE T ss_conf 878997 No 43 >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} Probab=25.42 E-value=32 Score=14.39 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=52.0 Q ss_pred CCEEEEEEEECCCCEEEEC-CCC--CEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHC--CCCCEEE Q ss_conf 8379999642588667986-999--8699999983456420268845301124302110158987722110--4771599 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHT-QDG--RKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYL--RKGSKVY 79 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~-~~g--~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l--~KG~~V~ 79 (159) ++.|-|+|.|+.- ..+.. ..| ..++-++| + -.+| ....+.|.|--..+.+.-.... .-|..|- T Consensus 85 I~~VrIvG~VVg~-~yk~~~~~~~~~~y~iltI--D-----DsSG----~~s~i~vk~~~~~~~s~gl~~~s~n~G~~Ve 152 (220) T 3kf8_A 85 VNQINIFGKIVYE-QYKEKEFNGVEESYVILVI--S-----DFIG----IDSKIRVRLSQEQFKEVGLTLDKKNYGKIVE 152 (220) T ss_dssp ECEEEEEEEEEEE-EEECCBCSSCBCCEEEEEE--E-----CCCS----SSCEEEEEEEHHHHHTTTCCTTSCCTTCEEE T ss_pred EEEEEEEEEEEEE-EEECCCCCCCCCCEEEEEE--E-----CCCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCEEE T ss_conf 1899999999999-9842655666653499999--5-----6999----9468999957510256664445467684599 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 98413333320468837688999997769846677 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) |+|.+..--=. -++..|+.-++.++.+..+.... T Consensus 153 i~G~is~~~~~-~~~~~r~~rqL~ve~i~vl~~~~ 186 (220) T 3kf8_A 153 LEGEIYNWYDS-INVSKKPDRELKVSKITVLSHRP 186 (220) T ss_dssp EEEEEEECCCS-TTTTSCCCEEEEEEEEEEEESSS T ss_pred EEEEECCEEEE-CCCCCCCCEEEEEEEEEEECCCC T ss_conf 99886104420-22132465379999999943678 No 44 >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Probab=24.26 E-value=34 Score=14.25 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=46.5 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCC----HHHHHHHHHHHCCCCCEEEEEE Q ss_conf 799996425886679869998699999983456420268845301124302110----1589877221104771599984 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF----SEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~----g~~~Ae~~~~~l~KG~~V~V~G 82 (159) +|+|.|+|.+ +|. .|+ +.|-.- +| .+.-+.|++- +...-+.+ ..|+.|+.|.|+| T Consensus 18 ~V~v~GwV~~---~R~--~g~--l~Fi~L-----rD--------~~g~iQv~~~~~~~~~~~~~~~-~~l~~g~~v~v~G 76 (438) T 3nem_A 18 KVKVAGWVWE---VKD--LGG--IKFLWI-----RD--------RDGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVEG 76 (438) T ss_dssp EEEEEEEEEE---EEE--ETT--EEEEEE-----EE--------TTEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEEE T ss_pred EEEEEEEEEE---EEC--CCC--CEEEEE-----EE--------CCEEEEEEEECCCCCHHHHHHH-HCCCCCEEEEEEE T ss_conf 9999999881---884--798--099999-----95--------9863999995897999999998-2899834999996 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 1333332046883768899999776984667 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) .+..+. .|+. ..+|.+..+.++... T Consensus 77 ~v~~~~----~~~~--~iei~~~~~~~ls~~ 101 (438) T 3nem_A 77 VVNFTP----KAKL--GFEILPEKIVVLNRA 101 (438) T ss_dssp EEEECT----TSTT--SEEEEEEEEEEEECB T ss_pred EEEECC----CCCC--EEEEEEEEEEECCCC T ss_conf 999279----9973--089976556521466 No 45 >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Probab=23.89 E-value=35 Score=14.21 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=47.0 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH----HHHHHHHHCCCCCEEEEEE Q ss_conf 799996425886679869998699999983456420268845301124302110158----9877221104771599984 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE----LCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~----~Ae~~~~~l~KG~~V~V~G 82 (159) +|+|.|+|.+ +|. .|+ + .|-.- +|. +.-+.|++-.+. .-+.+ ..|..|+.|.|+| T Consensus 18 ~V~v~GrV~~---~R~--~Gk-l-~F~~L-----rD~--------~g~iQvv~~~~~~~~~~~~~~-~~l~~~~~V~v~G 76 (434) T 1x54_A 18 KVRLAGWVYT---NMR--VGK-K-IFLWI-----RDS--------TGIVQAVVAKNVVGEETFEKA-KKLGRESSVIVEG 76 (434) T ss_dssp EEEEEEEEEE---EEE--ETT-E-EEEEE-----EET--------TEEEEEEECHHHHCHHHHHHH-HTCCTTCEEEEEE T ss_pred EEEEEEEEEE---EEC--CCC-C-EEEEE-----ECC--------CCCEEEEEECCCCCHHHHHHH-HCCCCCEEEEEEE T ss_conf 9999998670---765--799-2-99999-----808--------825899997997999999999-6489956999999 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 13333320468837688999997769846677 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) .++.+.= +.| ..+|.|+.+.++.... T Consensus 77 ~v~~~~~--~~g----~~el~~~~i~il~~~~ 102 (434) T 1x54_A 77 IVKADER--APG----GAEVHVEKLEVIQAVS 102 (434) T ss_dssp EEEECTT--SGG----GEEEEEEEEEEEECCS T ss_pred EEECCCC--CCC----CEEEEHHHHHHHHHCC T ss_conf 9988888--888----6785254655545324 No 46 >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Probab=22.96 E-value=32 Score=14.39 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.9 Q ss_pred CCCCCCEEEEEE Q ss_conf 987783799996 Q gi|254780183|r 1 MVASLNKVILIG 12 (159) Q Consensus 1 mm~~mN~v~l~G 12 (159) ||++.-+|.||| T Consensus 2 m~~~~~~V~IIG 13 (363) T 1c0p_A 2 MMHSQKRVVVLG 13 (363) T ss_dssp CCCCSCEEEEEC T ss_pred CCCCCCCEEEEC T ss_conf 989999899989 No 47 >1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Probab=22.01 E-value=38 Score=13.99 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=34.2 Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 43021101589877221104771599984133333204688376889999977698466 Q gi|254780183|r 54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) -+.|.+.++ +. +.++-|++|.|.|-++... .++...+..-+.|..|..+.. T Consensus 199 ~i~v~l~~d-Lv----d~~~pGd~V~i~GI~~~~~---~~~~~~~~~~l~a~~I~~~~~ 249 (279) T 1ltl_A 199 QITVVLEDD-LV----DTLTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLEQ 249 (279) T ss_dssp EEEEEEEGG-GT----TCCCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC-- T ss_pred EEEEEEECC-CC----CCCCCCCEEEEEEEEEEEC---CCCCCCEEEEEEEEEEEEECC T ss_conf 899999244-00----8577997479999998745---899872248999999999555 No 48 >1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Probab=21.47 E-value=37 Score=14.02 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 101589877221104771599984 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ..| ++|..+++.|-.|+.|+|.- T Consensus 18 ~lG-RLAs~vAk~ll~Gd~ViVvN 40 (145) T 1vq8_J 18 IMG-RVASQVAEQALDGETVAVVN 40 (145) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEEC T ss_pred CHH-HHHHHHHHHHCCCCEEEEEE T ss_conf 458-88999989854899799998 No 49 >1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Probab=20.75 E-value=39 Score=13.88 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.9 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 10158987722110477159998 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..| ++|..++..|..|+.|+|. T Consensus 10 ~LG-RlAs~iAk~L~~Gd~VvVv 31 (142) T 1j3a_A 10 ILG-RLASRVAKMLLEGEEVVIV 31 (142) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEE T ss_pred CHH-HHHHHHHHHHCCCCEEEEE T ss_conf 327-8999999998089969999 No 50 >2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae} Probab=20.19 E-value=41 Score=13.76 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=56.7 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159) +|.|.|-|-|-+-. -..+ + +-|-|...... .- |+ +--|+|+-+-+- .++|--+.+|..|-.-+.++|.| T Consensus 8 ln~v~leg~i~s~~---ws~~-k--tgf~vti~q~r--~f-g~-~~ftdyyviyan-~ql~~elek~~~~~~~~~i~g~l 76 (110) T 2hql_A 8 LNRVFLEGEIESSC---WSVK-K--TGFLVTIKQMR--FF-GE-RLFTDYYVIYAN-GQLAYELEKHTKKYKTISIEGIL 76 (110) T ss_dssp CEEEEEEEEEEEEE---ECTT-C--SEEEEEEEEEE--EE-TT-EEEEEEEEEEEE-HHHHHHHHHHHTTCSEEEEEEEE T ss_pred HHHHHHHHHHHHHE---EEEC-C--CEEEEEEEEHH--HH-CC-EEEEEEEEEEEC-CCHHHHHHHHHHHCEEEEEEEEE T ss_conf 98998751003430---0005-7--24899994043--32-50-421068999988-82247789877540479997641 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 33332046883768899999776984667 Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) ++.. ++ -.+...+.|.+..| +.++ T Consensus 77 ~ty~--~~-ks~iwkt~i~~~ki--~npk 100 (110) T 2hql_A 77 RTYL--ER-KSEIWKTTIEIVKI--FNPK 100 (110) T ss_dssp EEEE--ET-TTTEEEEEEEEEEE--CCTT T ss_pred EHHH--HH-HHHHHHHEEEEEEE--CCCC T ss_conf 0577--77-66775540354440--0888 Done!