RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780183|ref|YP_003064596.1| single-strand binding protein
(ssb) [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>1x3e_A Single-strand binding protein; oligonucleotide binding fold,
DNA-binding protein, DNA binding protein; 2.15A
{Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A
1ue5_A 1ue6_A 1ue7_A (A:)
Length = 165
Score = 136 bits (343), Expect = 1e-33
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
A + ++GNL ADP++R T G + N +A++ DR + E ++
Sbjct: 2 AGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWR 61
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ 122
E V + L +GS+V + G L+ R ++ + G R E+ + + + +
Sbjct: 62 EAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKAS 121
Query: 123 RSEQHSNNLKENVVGNRYSSPREESV-------FSDELDDEIPF 159
RS G+R S P+++ DDE PF
Sbjct: 122 RSGGGGGGFGSGGGGSRQSEPKDDPWGSAPASGSFSGADDEPPF 165
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA
repair, DNA replication, phosphoprotein; 2.14A
{Streptomyces coelicolor} (A:)
Length = 199
Score = 131 bits (329), Expect = 6e-32
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 4/161 (2%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
A + ++GNL DP++R T G + R+A++ DR TNE ++
Sbjct: 2 AGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWR 61
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM----VMLDGRRDSLQ 118
+ V + L++G +V ++G L+ R ++D+ G R E+ + + +
Sbjct: 62 QAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGASLRSATAKVTKTS 121
Query: 119 GEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159
G+ + + G + + P+
Sbjct: 122 GQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPW 162
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch
fever, rochalimaea, LYME disease, ALS collaborative
crystallography, DNA replication; 2.50A {Bartonella
henselae} (A:)
Length = 169
Score = 127 bits (319), Expect = 8e-31
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 8/159 (5%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
+ LNKV+LIG LG DP+ + G ++VN R+AT +S+ ++ T+++ EKTEWHSV+VF
Sbjct: 19 PGSMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVF 78
Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE 120
+ +I QYL KGSKVYIEG LQTRKWQD++G++RYTTEI++ D+ + +
Sbjct: 79 NPHFAKIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138
Query: 121 EQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159
S + Y+ + D +PF
Sbjct: 139 SASSSSVT--------SQSYAIASGADDYGISAHDSMPF 169
>1eqq_A Single stranded DNA binding protein; beta barrel,
protein-DNA complex, replication/RNA complex; HET: 5MU;
3.20A {Escherichia coli} (A:)
Length = 178
Score = 126 bits (316), Expect = 2e-30
Identities = 64/176 (36%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
+NKVIL+GNLG DP+VR+ +G + NI +ATS+SW+D+ T E +E+TEWH V++F
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLF-G 62
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ 122
+L + +YLRKGS+VYIEG L+TRKW DQSG +RYTTE+++ + G
Sbjct: 63 KLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAP 122
Query: 123 RSEQHSNNLKENVVGNRYSSPREESVFS-------------------DELDDEIPF 159
+ G + DD+IPF
Sbjct: 123 AGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178
>1z9f_A Single-strand binding protein; TM0604, single stranded
DNA-binding protein, structural genomics, joint center
for structural genomics, JCSG; 2.30A {Thermotoga
maritima} (A:)
Length = 153
Score = 119 bits (299), Expect = 2e-28
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
+ NK+ILIG L DP+ R+T G + IA + ++ + T++ ++ F
Sbjct: 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQT-TDFFRIVTF-G 71
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ 122
L YL KG V +EG ++ R+W+ +G R + E++ + +D + E +
Sbjct: 72 RLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAETVSETE 131
Query: 123 RSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159
+ + +DE PF
Sbjct: 132 EELEIPEE---------------DFSSDTFSEDEPPF 153
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel;
2.20A {Escherichia coli} (A:)
Length = 145
Score = 118 bits (297), Expect = 3e-28
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63
+NKVIL+GNLG DP+VR+ +G + NI +ATS+SW+D+ T E +E+TEWH V++F +
Sbjct: 4 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLF-GK 62
Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQR 123
L + +YLRKGS+VYIEG L+TRKW DQSG +RYTTE+++ + G
Sbjct: 63 LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPA 122
Query: 124 SEQHSNN 130
Sbjct: 123 GGNIGGG 129
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit
peptide; HET: DNA; 2.40A {Homo sapiens} (A:)
Length = 132
Score = 113 bits (284), Expect = 1e-26
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNE-----RREKTEWH 55
+ SLN+V L+G +G DP +R + + +AT++ W+ + +KT WH
Sbjct: 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWH 69
Query: 56 SVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115
+ VF L + QY++KGS++Y+EG + ++ D++ R T II +++ L +
Sbjct: 70 RISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTK 129
Query: 116 S 116
Sbjct: 130 E 130
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A
{Deinococcus radiodurans} (A:)
Length = 301
Score = 110 bits (275), Expect = 8e-26
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
N V LIG L DP++R+T +G + +A D R +H V + +
Sbjct: 3 RGXNHVYLIGALARDPELRYTGNGXAVFEATVAGEDRVIGN-DGRERNLPWYHRVSILGK 61
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVM 109
E+ L+ G V +EG+L+ R+W+ G R +
Sbjct: 62 PAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRXEQ 108
Score = 77.7 bits (190), Expect = 7e-16
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 17 DPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGS 76
DP++R+T G ++++ IA +++++DR +R+EK + ++ + + LRKG
Sbjct: 141 DPEIRYTPAGDAVLSLSIAVNENYQDR-QGQRQEKVHYIDATLWRD--LAENXKELRKGD 197
Query: 77 KVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVV 136
V I G L W D+ GN R +T + + L + + + +
Sbjct: 198 PVXIXGRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGNANSGYAAATPAAPRTQTASS 257
Query: 137 GNRYSSPREESVFS---------------------DELDDEIPF 159
R +S +S S +D++PF
Sbjct: 258 AARPTSGGYQSQPSRAANTGSRSGGLDIDQGLDDFPPEEDDLPF 301
>2vw9_A Single-stranded DNA binding protein; DNA replication,
single-stranded DNA, single-stranded DNA binding
protein, oligonucleotide/oligosaccharide binding fold,
OB-fold; 2.30A {Helicobacter pylori} (A:)
Length = 134
Score = 109 bits (274), Expect = 2e-25
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEEL 64
NKVI++G L + ++++ G I +ATS +K + E+ + +F
Sbjct: 2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQ-DGTLGEEVCFIDARLFGR-T 59
Query: 65 CRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRS 124
I QYL KGS V IEG L W DQ+G I S+ +D + D+ Q +
Sbjct: 60 AEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQD 119
Query: 125 EQHSNN 130
N
Sbjct: 120 SIMHEN 125
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA
binding protein; 2.00A {Escherichia coli} (A:)
Length = 104
Score = 103 bits (259), Expect = 9e-24
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELC 65
N+++L G + P + + G + ++ R+ VIV
Sbjct: 3 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEA--GFHRQAWCQXPVIVS-GHEN 59
Query: 66 RIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113
+ + + GS++ ++G + K ++ E I ++D
Sbjct: 60 QAITHSITVGSRITVQGFISCHKAKNGLSKXVLHAEQI----ELIDSG 103
>1v1q_A Primosomal replication protein N; primosome, DNA
replication, DNA binding; 2.1A {Escherichia coli} (A:)
Length = 113
Score = 103 bits (258), Expect = 1e-23
Identities = 14/116 (12%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
N+++L G + P + + G + ++ R+ VI
Sbjct: 2 NSLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEA--GFHRQAWCQMPVI-V 58
Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDS 116
S + + + GS++ ++G + K ++ + + ++D
Sbjct: 59 SGHENQAITHSITVGSRITVQGFISCHKAKNGLSK----MVLHAEQIELIDSVDKL 110
>3koj_A Uncharacterized protein YCF41; single-strand binding protein
family, PF00436, SNR59A, NESG, structural genomics,
PSI-2; 1.90A {Synechococcus elongatus pcc 6301} (A:)
Length = 108
Score = 99.3 bits (247), Expect = 2e-22
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
+ N IL + P +R+ QD + V + ++ V+ +
Sbjct: 7 HHSHXNSCILQATVVEAPQLRYAQDNQTPVAEXVVQFPGLS------SKDAPARLKVVGW 60
Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM 107
+ + ++ R +V +EG L+ GN TE+ + +
Sbjct: 61 -GAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRV 106
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG,
structural genomics, PSI-2, protein structure
initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A
3klw_A (A:)
Length = 115
Score = 98.5 bits (245), Expect = 4e-22
Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 12/125 (9%)
Query: 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELC 65
N + L + RHT G + + + + R S + +L
Sbjct: 2 NTLELSARVLECGAXRHTPAGLPALELLLVHESEVVEA--GHPRRVELTISAVAL-GDLA 58
Query: 66 RIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRSE 125
++ G++ ++G L + ++ ++ + G + E
Sbjct: 59 LLL-ADTPLGTEXQVQGFLAPARKDSVKV------KLHLQQARRIAGSXG--RDPLVGLE 109
Query: 126 QHSNN 130
H ++
Sbjct: 110 HHHHH 114
>3k8a_A Putative primosomal replication protein; beta-barrel,
OB-fold, DNA binding protein; 2.70A {Neisseria
gonorrhoeae fa 1090} (A:)
Length = 103
Score = 98.0 bits (244), Expect = 5e-22
Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 11/110 (10%)
Query: 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE 62
N V L + +R+T G +++I + ++ ++ +
Sbjct: 5 GFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEEN--GQQCLVQLEIPARILGR 62
Query: 63 ELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112
+ R+G +EG L + + + ++++ G
Sbjct: 63 QAEE---WQYRQGDCATVEGFLAQKSRRSLMP------MLRIQNIKEYKG 103
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG
X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2;
2.30A {Ralstonia solanacearum} (A:)
Length = 101
Score = 97.3 bits (242), Expect = 8e-22
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63
++N++ L+ L R+T G IVN ++ S + R+ + +
Sbjct: 1 AINRLQLVATLVEREVXRYTPAGVPIVNCLLSYSGQAXEA--QAARQVEFSIEALGAGKX 58
Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEII 103
V + G+ + G L + ++ + +
Sbjct: 59 A--SVLDRIAPGTVLECVGFLARKHRSSKALVFH-ISGLE 95
>2fxq_A Single-strand binding protein; strand beta-sheet extended
loops, DNA binding protein; 1.85A {Thermus aquaticus}
PDB: 2ihe_A 2cwa_A 2ihf_A (A:)
Length = 264
Score = 94.7 bits (234), Expect = 5e-21
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
M LN+V LIG L A PD+R+T G I+++ +A D++ D E RE +H +
Sbjct: 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQE-REVPWYHR-VRL 58
Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE 120
+ L KG +++EG L+ R+W ++ G + ++ + L+GR +
Sbjct: 59 LGRQAEMWGDLLEKGQLIFVEGRLEYRQW-EKDGEKKSEVQVRAEFIDPLEGRGRETLED 117
Query: 121 EQRSEQH 127
+ +
Sbjct: 118 ARGQPRL 124
Score = 63.5 bits (153), Expect = 1e-11
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 40 WKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYT 99
+E+ H + V + LRKG + + G L W SG R+
Sbjct: 157 LAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIGRLVNDSWTSSSGERRFQ 216
Query: 100 TEIIMRSMVMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159
T + + G + Q +E + ++++PF
Sbjct: 217 TRVEALRLERPTRGPAQAGGSRPPTVQTG------------GVDIDEGLEDFPPEEDLPF 264
>3l12_A Putative glycerophosphoryl diester phosphodiesterase;
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi}
(A:1-65,A:123-313)
Length = 256
Score = 25.0 bits (54), Expect = 5.6
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 11/82 (13%)
Query: 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKT-EWHSVIVF 60
+ + G + DV T DG +V T R+
Sbjct: 35 LEGFAFTLAAGVRALEFDVVXTADGVPVV-----THGIHVPRLGELLDLCAGYGDQAPYL 89
Query: 61 SEELCRIVEQYLRKGSKVYIEG 82
EL + +
Sbjct: 90 LLEL-----KSDPALXHDHAAR 106
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase,
succino AMP-lyase, purine biosynthesis, alternative
splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
(A:1-260,A:464-503)
Length = 300
Score = 24.8 bits (53), Expect = 5.9
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 122 QRSEQHSNNLKENVVGNRYSSPREESVFSDE 152
+ S + + + +RY+SP VFSD
Sbjct: 25 AGGDHGSPDSYRSPLASRYASPEMCFVFSDR 55
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing,
mismatch repair, nucleotide-binding, DNA-binding,
polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A
{Homo sapiens} (A:236-373)
Length = 138
Score = 24.1 bits (51), Expect = 9.2
Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 31 NIRI------ATSDSWKDRVTNERREKTEWHSVIVFSE--ELCRIVEQYLRK 74
N+ + ++ + + + + + S I++ + V L+
Sbjct: 3 NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN 54
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,194,989
Number of extensions: 50014
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 27
Length of query: 159
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 77
Effective length of database: 2,184,039
Effective search space: 168171003
Effective search space used: 168171003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)