RPSBLAST alignment for GI: 254780184 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 504 LSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
           LS G+ QRI LA     AL G   L +LDEP+  L +     L N +K L+  G TV+V+
Sbjct: 455 LSGGQRQRIALAR----ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVI 510

Query: 562 EHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
            H    +   D I        +  G+I   G   +++A 
Sbjct: 511 THRPSLLGCVDKI------LVLQDGRIARFGERDEVLAK 543