RPSBLAST alignment for GI: 254780184 and conserved domain: cd03271

>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
 Score =  165 bits (419), Expect = 6e-41
 Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 17/175 (9%)

Query: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480
           C +C G R   E+L V+  GK I ++ DM++++A  +FE +P                 I
Sbjct: 103 CEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK----------------I 146

Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG-VLYILDEPSIGLHQR 539
            +++  L ++GL Y+ L + +  LS GE+QRI+LA ++    TG  LYILDEP+ GLH  
Sbjct: 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH 206

Query: 540 DNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSP 594
           D  KL+  L+ L D GNTV+V+EH+ + +  AD I+D+GPE G  GG++VA G+P
Sbjct: 207 DVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261