RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(959 letters)
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 1416 bits (3667), Expect = 0.0
Identities = 585/960 (60%), Positives = 739/960 (76%), Gaps = 28/960 (2%)
Query: 2 SKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLS 61
+ I IRGAREHNL+NI +E+PRNKL+V+TG+SGSGKSSLAFDTI+AEGQRRYVESLS
Sbjct: 1 MMMDKIRIRGAREHNLKNIDLEIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60
Query: 62 TYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIP 121
YARQFLG + KPDV+ I+GLSP ISI+QK TSHNPRSTVGT+TEI+DYLRLLFAR+G P
Sbjct: 61 AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLFARVGTP 120
Query: 122 HSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRVQ 181
+ P GLPIESQT+SQ+ DR+L+ +GT++ +LAP+VR RKGE+KK L ++ K+GF RV+
Sbjct: 121 YCPNCGLPIESQTVSQIVDRILALPEGTKIQILAPVVRGRKGEHKKLLEQLRKQGFVRVR 180
Query: 182 IDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIAD 241
+DG P LDK KHTIEVVVDR+VV E++R R+ +S+ T L+L +GLA+ + D
Sbjct: 181 VDGEV----YEPKLDKNKKHTIEVVVDRLVVKEDLRSRLADSIETALKLADGLAVVEVMD 236
Query: 242 STFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGLG 301
+ +LFSEN +CPV GFSI E+EPR+FSFN+P GAC CDGLG
Sbjct: 237 D-----------------EELLFSENFACPVCGFSIPELEPRLFSFNSPFGACPTCDGLG 279
Query: 302 TRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNEN 361
+ +VD LVIP+ L+LN GAIAPW N ++Y+ +L AL + GF ++ W L E
Sbjct: 280 VKLEVDPDLVIPDPNLSLNEGAIAPWGNT-NSYYLQMLQALAEHYGFDLDTPWKDLPEEQ 338
Query: 362 QQILLYGTKKNSIALARHKKS---SYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSS 418
Q I+LYG+ I + + ++ F G+IP LE+R+ E +S ++E +++YMS
Sbjct: 339 QDIILYGSGDEVIPFYFNDRGGTKKRTHKPFEGVIPNLERRYLETESESIREELEKYMSE 398
Query: 419 SPCTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILK 478
PC C G RLK E+LAVKIAGK+I EI++MSI A +FE L +++K KI+E ILK
Sbjct: 399 KPCPSCKGTRLKPEALAVKIAGKNIAEISEMSIADALEFFENLK--LSEKEKKIAEPILK 456
Query: 479 EIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQ 538
EI++R+ FLV++GL YLTLSR++ LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLHQ
Sbjct: 457 EIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ 516
Query: 539 RDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
RDN +LI TLK LRD GNTVIVVEHDE+T+ AADHI+DIGP AG +GG+IVAEG+P +++
Sbjct: 517 RDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576
Query: 599 AHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGI 658
A+P SLTG+Y+SGK +I++P+KRR N + + AR NNLKN+ IPLG+FT +TG+
Sbjct: 577 ANPESLTGQYLSGKKTIEVPKKRRAPNGK-WLELKGARRNNLKNIDVEIPLGVFTCVTGV 635
Query: 659 SGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPA 718
SG GKST + TL A AR + G+K PG Y +I+GLE+IDKV+ I+QSPIG TPRSNPA
Sbjct: 636 SGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPA 695
Query: 719 TYVGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYIT 778
TY G F IR+LF+ PE+KA GYK G FSFNVKGGRCE C+G+GVIKI MHFLPDVY+
Sbjct: 696 TYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 755
Query: 779 CDVCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIK 838
C+VC G+RYN ETL++++K K+IADVL MTV+E+L+FF AIP I KL TL +VGLGYIK
Sbjct: 756 CEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIK 815
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
+GQ A TLSGGE+QRVKLAKELSK++TG TLYILDEPTTGLH+ DI KLL +LH LVD+G
Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875
Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKN 958
N++IVIEHNL+VIKTADWI+D GPEGGDGGGEI+ASG PE +AK SYTGK+LK LK
Sbjct: 876 NTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 410 bits (1056), Expect = e-115
Identities = 171/308 (55%), Positives = 213/308 (69%), Gaps = 47/308 (15%)
Query: 630 IHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIY 689
+ + AR NNLKN+ IPLG+ T +TG+SG GKS+ + TLY A AR + K PG +
Sbjct: 1 LTLKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH 60
Query: 690 DRIDGLEYIDKVVSINQSPIGHTPRSNPATYVGAFTPIRDLFSNLPESKACGYKAGCFSF 749
DRI+GLE+IDKV+ I+QSPIG TPRSNPATY G F IR+LF
Sbjct: 61 DRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELF------------------ 102
Query: 750 NVKGGRCEVCEGNGVIKIAMHFLPDVYITCDVCQGQRYNPETLQIRFKDKSIADVLSMTV 809
C+VC+G+RYN ETL++R+K KSIADVL MTV
Sbjct: 103 -----------------------------CEVCKGKRYNRETLEVRYKGKSIADVLDMTV 133
Query: 810 DESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTL 869
+E+L+FF IP I KL TL +VGLGYIK+GQ A TLSGGE+QR+KLAKELSK++TG TL
Sbjct: 134 EEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTL 193
Query: 870 YILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGG 929
YILDEPTTGLH+HD+ KLL +L LVD+GN+++VIEHNL+VIK ADWI+D GPEGGDGGG
Sbjct: 194 YILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGG 253
Query: 930 EIIASGPP 937
+++ASG P
Sbjct: 254 QVVASGTP 261
Score = 165 bits (419), Expect = 6e-41
Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 17/175 (9%)
Query: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480
C +C G R E+L V+ GK I ++ DM++++A +FE +P I
Sbjct: 103 CEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK----------------I 146
Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG-VLYILDEPSIGLHQR 539
+++ L ++GL Y+ L + + LS GE+QRI+LA ++ TG LYILDEP+ GLH
Sbjct: 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH 206
Query: 540 DNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSP 594
D KL+ L+ L D GNTV+V+EH+ + + AD I+D+GPE G GG++VA G+P
Sbjct: 207 DVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261
Score = 78.3 bits (193), Expect = 9e-15
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQ 66
++++GARE+NL+NI +++P L +TGVSGSGKSSL DT++ + ++
Sbjct: 1 LTLKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYP-----ALARRLHLKKE 55
Query: 67 FLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF 115
G +E ++ + I I+Q PRS T T + D +R LF
Sbjct: 56 QPGNHD--RIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELF 102
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 215 bits (548), Expect = 6e-56
Identities = 88/114 (77%), Positives = 105/114 (92%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQ 66
I +RGAREHNL+N+ +++PRNKL+V+TGVSGSGKSSLAFDTI+AEGQRRYVESLS YARQ
Sbjct: 1 IIVRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 60
Query: 67 FLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120
FLG + KPDV+ I+GLSP I+I+QK TS NPRSTVGT+TEI+DYLRLLFAR+GI
Sbjct: 61 FLGQMDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGI 114
Score = 195 bits (498), Expect = 4e-50
Identities = 80/113 (70%), Positives = 100/113 (88%)
Query: 480 IQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQR 539
I++R+ FLV++GL YLTLSR++ LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLH R
Sbjct: 114 IRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173
Query: 540 DNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEG 592
DN +LI TLK LRD GNTV+VVEHDE+T+ AADH++DIGP AG++GG+IVA+G
Sbjct: 174 DNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
Score = 139 bits (352), Expect = 4e-33
Identities = 60/132 (45%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
Query: 808 TVDESLDF----FAAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQ 863
TV E D+ FA + I +L L +VGLGY+ + +SA TLSGGE+QR++LA ++
Sbjct: 97 TVTEIYDYLRLLFARVG-IRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155
Query: 864 ATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPE 923
TG LY+LDEP+ GLH D +L+ L L D GN+++V+EH+ + I+ AD ++D GP
Sbjct: 156 LTG-VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214
Query: 924 GGDGGGEIIASG 935
G GGEI+A G
Sbjct: 215 AGVHGGEIVAQG 226
Score = 69.4 bits (170), Expect = 4e-12
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 630 IHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLY-----------KAAARI 678
I V AR +NLKNV IP ITG+SG GKS+ T+Y A AR
Sbjct: 1 IIVRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 60
Query: 679 IMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATYVGAFTPIRDLFSNLP 735
+G P D I+GL ++I+Q PRS T + +R LF+ +
Sbjct: 61 FLGQMDKPD-VDSIEGLS---PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVG 113
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 144 bits (365), Expect = 1e-34
Identities = 65/136 (47%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Query: 801 IADVLSMTVDESLDFFAAIPTIH-NKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKE 859
+ + L F+ I ++L L +VGLGY+ +GQ +TLSGGE QRVKLA E
Sbjct: 42 LYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101
Query: 860 LSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILD 919
L TL+ILDEP+TGLH DI +LL ++ L+D GN++I+IEHNL+V+ +ADWI+D
Sbjct: 102 LF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIID 160
Query: 920 FGPEGGDGGGEIIASG 935
FGP G GG+++ SG
Sbjct: 161 FGPGSGKSGGKVVFSG 176
Score = 135 bits (341), Expect = 6e-32
Identities = 54/111 (48%), Positives = 80/111 (72%)
Query: 482 KRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDN 541
++ FL+++GL YLTL + + LS GE QR++LAS++ S G L+ILDEPS GLHQ+D
Sbjct: 66 DQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125
Query: 542 TKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEG 592
+L+ +K L D GNTVI++EH+ + + +AD I+D GP +G +GGK+V G
Sbjct: 126 NQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
Score = 75.7 bits (186), Expect = 6e-14
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQ 66
+++ GA HNLQN+ + +P N L+V+TGVSGSGKS+L + ++A G+ R + L ++R
Sbjct: 1 LTVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRN 60
Query: 67 FLGTIKK 73
L I +
Sbjct: 61 KLIFIDQ 67
Score = 49.1 bits (117), Expect = 6e-06
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 630 IHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG--SKYNPG 687
+ V A +NL+N+ SIPL + +TG+SG GKST + LY + ++ K++
Sbjct: 1 LTVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRN 60
Query: 688 IYDRIDGLEYIDKV 701
ID L+++ V
Sbjct: 61 KLIFIDQLQFLIDV 74
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 76.0 bits (187), Expect = 5e-14
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 800 SIADVLSMTVDESLDFFAAIPTIHNK--LTTLKEVGLGYIKIGQSANTLSGGESQRVKLA 857
++ DV+ + +F + + L+ VG+ ++ + LSGG+ QRV LA
Sbjct: 93 TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-DRQIGELSGGQKQRVLLA 151
Query: 858 KELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLE-VIKTADW 916
+ L++ L +LDEP TG+ ++ ++L L G +++++ H+L V+ D
Sbjct: 152 RALAQNPD---LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
Query: 917 ILDFGPEGGDGGGEIIASGPPEAIAKEP 944
++ +IASGPPE + E
Sbjct: 209 VICL-------NRHLIASGPPEEVLTEE 229
Score = 56.8 bits (137), Expect = 2e-08
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QR+ LA + A L +LDEP G+ ++ + LK LR G TV++V H
Sbjct: 140 LSGGQKQRVLLARAL--AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197
Query: 564 DEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQIIAHPT 602
D ++A D ++ +N ++A G P +++
Sbjct: 198 DLGLVMAYFDRVI------CLN-RHLIASGPPEEVLTEEN 230
Score = 36.7 bits (85), Expect = 0.030
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTL 671
L++++ S+ G TA+ G +G GKST L + L
Sbjct: 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51
Score = 36.7 bits (85), Expect = 0.031
Identities = 11/43 (25%), Positives = 28/43 (65%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M +++N+++ L++IS+ + + ++ + G +G+GKS+L
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTL 46
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 74.7 bits (184), Expect = 1e-13
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 15/119 (12%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGL + A LS G+ +R+++A+ L AT L +LDEP GL+ + +L
Sbjct: 128 LERVGLAD-LADRPAGELSYGQQRRLEIARAL---ATDPKLLLLDEPAAGLNPEETEELA 183
Query: 889 NILHTLVDRGNSIIVIEHNLEVI-KTADWI--LDFGPEGGDGGGEIIASGPPEAIAKEP 944
++ L +RG +++++EH+++V+ AD + LD G +IA G P+ + P
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ--------GRVIAEGTPDEVRNNP 234
Score = 64.7 bits (158), Expect = 1e-10
Identities = 39/126 (30%), Positives = 73/126 (57%), Gaps = 11/126 (8%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
+E ++R L+E +GL L R + LS G+ +R+ +A A L +LDEP+ GL
Sbjct: 118 REARERAEELLERVGLADL-ADRPAGELSYGQQRRLEIA--RALATDPKLLLLDEPAAGL 174
Query: 537 HQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPS 595
+ + +L ++ LR+ G TV++VEHD + +++ AD + ++ G+++AEG+P
Sbjct: 175 NPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT------VLDQGRVIAEGTPD 228
Query: 596 QIIAHP 601
++ +P
Sbjct: 229 EVRNNP 234
Score = 30.4 bits (69), Expect = 2.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAA 676
L +V+ S+ G + G +G GK+T LIS + +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54
Score = 29.7 bits (67), Expect = 3.8
Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTI 48
+++ ++ R L ++S + ++ + G +G+GK++L F+ I
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTL-FNLI 46
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 73.9 bits (181), Expect = 2e-13
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 807 MTVDESLDFFAAIPTIHNKLTT------LKEVGLGYIKIGQSANTLSGGESQRVKLAKEL 860
+TV E+L+FFA + + + L+ GL K + TLSGG QR+ +A L
Sbjct: 93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALAL 151
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN-SIIVIEHNL-EVIKTADWIL 918
L ILDEPT+GL ++ +L L G +I++ H L E + D ++
Sbjct: 152 LHDPE---LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208
Query: 919 DFGPEGGDGGGEIIASGPPEAIAKE 943
G+IIA G PE + ++
Sbjct: 209 IL------NDGKIIAEGTPEELKEK 227
Score = 48.0 bits (114), Expect = 1e-05
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 478 KEIQKRIHFLVEI-GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGV--LYILDEPSI 534
+E ++RI L+E+ GL+ + LS G QR+ I AL L ILDEP+
Sbjct: 111 EEAEERIEELLELFGLEDKANKKVRT-LSGGMKQRL----SIALALLHDPELLILDEPTS 165
Query: 535 GLHQRDNTKLINTLKHLRDTGN-TVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEG 592
GL ++ L+ L G T+++ H EE D + +N GKI+AEG
Sbjct: 166 GLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV------IILNDGKIIAEG 219
Query: 593 SPSQIIAH 600
+P ++
Sbjct: 220 TPEELKEK 227
Score = 31.9 bits (72), Expect = 0.83
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL--ISTLYKA 674
L V+ + G + G +G GK+T L ++ L K
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57
Score = 29.9 bits (67), Expect = 3.1
Identities = 10/44 (22%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MSKIKNISIR-GAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+ +++N++ + G + L +S E+ ++ + G +G+GK++L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTL 47
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 72.1 bits (177), Expect = 6e-13
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 16/120 (13%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGLG + A LS G+ +R+++A+ L AT L +LDEP GL+ + +L
Sbjct: 134 LEFVGLGE-LADRPAGNLSYGQQRRLEIARAL---ATQPKLLLLDEPAAGLNPEETEELA 189
Query: 889 NILHTLVDRGN-SIIVIEHNLEVIKT-AD--WILDFGPEGGDGGGEIIASGPPEAIAKEP 944
++ L DRG +I++IEH+++++ AD +L++ GE+IA G PE + P
Sbjct: 190 ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY--------GEVIAEGTPEEVRNNP 241
Score = 57.9 bits (140), Expect = 1e-08
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 477 LKEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIG 535
+E ++R L+E +GL L N LS G+ +R+ +A + A L +LDEP+ G
Sbjct: 123 EREARERARELLEFVGLGELADRPAGN-LSYGQQRRLEIARAL--ATQPKLLLLDEPAAG 179
Query: 536 LHQRDNTKLINTLKHLRDTGN-TVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGS 593
L+ + +L ++ LRD G T++++EHD + M AD IV +N G+++AEG+
Sbjct: 180 LNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV------LNYGEVIAEGT 233
Query: 594 PSQIIAHP 601
P ++ +P
Sbjct: 234 PEEVRNNP 241
Score = 30.9 bits (70), Expect = 1.8
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKA-AARIIMGSK 683
+ +V+ + G + G +G GK+T LI+ YK + +I +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR 66
Score = 29.0 bits (65), Expect = 7.3
Identities = 11/49 (22%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIH 49
+ +++ +S R + ++S+E+ +++ + G +G+GK++L F+ I
Sbjct: 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTL-FNLIT 51
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 70.9 bits (174), Expect = 1e-12
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L+ VGL +S TLSGG+ QRV +A L A + +LDEPT GL +L
Sbjct: 118 ALELVGL-EGLRDRSPFTLSGGQKQRVAIAGVL---AMDPDILLLDEPTAGLDPAGRREL 173
Query: 888 LNILHTLVDRGNSIIVIEHNLE-VIKTADWIL 918
L +L L G +II++ H+L+ +++ AD ++
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVI 205
Score = 67.8 bits (166), Expect = 1e-11
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLH 537
+EI++R+ +E+ R+ LS G+ QR+ +A + A+ + +LDEP+ GL
Sbjct: 109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL--AMDPDILLLDEPTAGLD 166
Query: 538 QRDNTKLINTLKHLRDTGNTVIVVEHDEETMLA-ADHIV 575
+L+ LK L+ G T+I+V HD + +L AD ++
Sbjct: 167 PAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI 205
Score = 38.9 bits (91), Expect = 0.006
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 KIKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
++KN+S L +IS+ + + + +++ G +GSGKS+L
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLL 44
Score = 36.2 bits (84), Expect = 0.041
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L +++ +I G F I G +G GKST L
Sbjct: 17 LDDISLTIKKGEFVLIVGPNGSGKSTLL 44
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 70.4 bits (172), Expect = 2e-12
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 504 LSNGESQRIRLASQIGSALT--GVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
LS GE + LA + A LYILDE GL RD L + G VIV+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 562 EHDEETMLAADHIVDIGPE 580
H E AD ++ I
Sbjct: 138 THLPELAELADKLIHIKKV 156
Score = 66.9 bits (163), Expect = 3e-11
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 846 LSGGESQRVKLAKELSKQATGN-TLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
LSGGE + LA L+ + LYILDE GL D L + + +G +IVI
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 905 EHNLEVIKTADWILDFGPE 923
H E+ + AD ++
Sbjct: 138 THLPELAELADKLIHIKKV 156
Score = 37.6 bits (87), Expect = 0.018
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 11 GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQR 54
G + L ++TG +GSGKS++ A G
Sbjct: 5 GRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA 48
Score = 31.8 bits (72), Expect = 0.90
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 630 IHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIY 689
I + S + N + G T ITG +G GKST L + + +
Sbjct: 2 IVLGRFPSYFVPNDV-TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKA 60
Query: 690 DRIDGLEYIDKVVSINQ 706
I + + + Q
Sbjct: 61 GCIVAAVSAELIFTRLQ 77
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 69.4 bits (170), Expect = 4e-12
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 829 LKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L++VGL + + + LSGG QRV +A L+ + L I DEPTT L A++
Sbjct: 137 LEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP---KLLIADEPTTALDVTTQAQI 193
Query: 888 LNILHTLV-DRGNSIIVIEHNLEVI-KTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
L++L L + G +++ I H+L V+ + AD ++ GEI+ +GP E I P
Sbjct: 194 LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM------YKGEIVETGPTEEILSNPQ 247
Query: 946 S-YTGKFLKSI 955
YT L ++
Sbjct: 248 HPYTRGLLAAV 258
Score = 62.9 bits (153), Expect = 4e-10
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGL + + + LSGG+ QRV +A+ L A L ILDEP + L A++L
Sbjct: 413 LELVGLPPEFLDRYPHELSGGQRQRVAIARAL---ALEPKLLILDEPVSALDVSVQAQVL 469
Query: 889 NILHTLVDR-GNSIIVIEHNLEVIK-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPL- 945
N+L L + G + + I H+L V++ AD + G I+ GP E + + P
Sbjct: 470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVM------YDGRIVEEGPTEKVFENPQH 523
Query: 946 SYTGKFLKSILKN 958
YT K L ++ K
Sbjct: 524 PYTRKLLAAVPKP 536
Score = 62.9 bits (153), Expect = 4e-10
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 45/204 (22%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGL---HQRDNTKLINTLKHLRDTGNTVIV 560
LS G QR+ +A + AL L I DEP+ L Q L+ L+ R+ G V+
Sbjct: 155 LSGGMRQRVMIAMAL--ALKPKLLIADEPTTALDVTTQAQILDLLKDLQ--RELGMAVLF 210
Query: 561 VEHDEETML-AADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS-LTGKYMS-----GKM 613
+ HD + AD +V + G+IV G +I+++P T ++ G
Sbjct: 211 ITHDLGVVAELADRVV------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDE 264
Query: 614 SIKIPEKRRQYNPNRMIHVIN----------------ARSNNLKNVTGSIPLGLFTAITG 657
I +R ++ V N + +V+ + G + G
Sbjct: 265 KIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVG 324
Query: 658 ISGGGKSTFLISTLYKAAARIIMG 681
SG GKST ARI+ G
Sbjct: 325 ESGSGKSTL---------ARILAG 339
Score = 51.7 bits (124), Expect = 9e-07
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 478 KEIQKRI-HFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
E + R+ L +GL L R + LS G+ QR+ +A + AL L ILDEP L
Sbjct: 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARAL--ALEPKLLILDEPVSAL 460
Query: 537 HQRDNTKLINTLKHLRD-TGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSP 594
+++N LK L++ G T + + HD + AD + A + G+IV EG
Sbjct: 461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV------AVMYDGRIVEEGPT 514
Query: 595 SQIIAHP 601
++ +P
Sbjct: 515 EKVFENP 521
Score = 37.9 bits (88), Expect = 0.015
Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 1 MSKIKNISI----RGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA--------FDTI 48
+ +++N+++ G R ++++S E+ +++ + G SGSGKS+LA
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 49 HAEGQRRY-VESLSTYARQFLGTIKKPDV-----EQIDGLSPTISIEQKNTSHNPRSTVG 102
G+ L + + + ++ + + + L+P ++I + G
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 103 TITEIHDYLRLLFARIGIPH 122
+ E L ++G+P
Sbjct: 125 SRAEARKRAVELLEQVGLPD 144
Score = 31.7 bits (72), Expect = 0.91
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ ++S +L + + + G SGSGKS+LA
Sbjct: 305 KAVDDVSFDLREGETLGLVGESGSGKSTLA 334
Score = 29.4 bits (66), Expect = 5.6
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDG 694
+++V+ + G I G SG GKST A +MG P G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTL---------ALALMG--LLPEGGRITSG 68
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 69.1 bits (169), Expect = 6e-12
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L+ VGL + + LSGG+ QRV +A L A G + +LDEPT GL +L
Sbjct: 122 ALELVGLEELLD-RPPFNLSGGQKQRVAIAGVL---AMGPEILLLDEPTAGLDPKGRREL 177
Query: 888 LNILHTLV-DRGNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
L +L L + G +II++ H+LE V++ AD ++ G+I+A G P I +
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVL------DDGKILADGDPAEIFNDA 230
Score = 68.4 bits (167), Expect = 8e-12
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 476 ILKEIQKRIHF-LVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSI 534
+EI++R+ L +GL+ L L R LS G+ QR+ +A + A+ + +LDEP+
Sbjct: 111 PREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVL--AMGPEILLLDEPTA 167
Query: 535 GLHQRDNTKLINTLKHLR-DTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEG 592
GL + +L+ LK L+ + G T+I+V HD E + AD +V ++ GKI+A+G
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV------LDDGKILADG 221
Query: 593 SPSQIIAHPTSL 604
P++I L
Sbjct: 222 DPAEIFNDAELL 233
Score = 34.5 bits (79), Expect = 0.16
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V+ I G + G +G GKST L
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLL 47
Score = 34.1 bits (78), Expect = 0.21
Identities = 15/45 (33%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MSKIKNISIR-GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
M + +N+S R R+ L+++S+E+ + + +++ G +GSGKS+L
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLL 47
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 68.2 bits (167), Expect = 1e-11
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 800 SIADVLSMTVDESLDFFAAIPTIHNK--LTTLKEVGLGYIK---IGQSANTLSGGESQRV 854
S+ DV+ M + F + L+ VGL + IG+ LSGG+ QRV
Sbjct: 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE----LSGGQQQRV 141
Query: 855 KLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLE-VIKT 913
LA+ L + L +LDEP G+ + +L L G +I+V+ H+L V++
Sbjct: 142 LLARALVQDPD---LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198
Query: 914 ADWIL 918
D +L
Sbjct: 199 FDRVL 203
Score = 53.2 bits (128), Expect = 3e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 499 RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTV 558
R LS G+ QR+ LA + L +LDEP G+ + + L+ LR G T+
Sbjct: 128 RQIGELSGGQQQRVLLARAL--VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTI 185
Query: 559 IVVEHDEETMLA-ADHIV 575
+VV HD +L D ++
Sbjct: 186 LVVTHDLGLVLEYFDRVL 203
Score = 37.4 bits (87), Expect = 0.019
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
L++V+ + G F AI G +G GKST L + I+G
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLL---------KAILG 47
Score = 33.2 bits (76), Expect = 0.39
Identities = 9/41 (21%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++++++ L+++S E+ + + + G +G+GKS+L
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTL 41
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 67.1 bits (164), Expect = 2e-11
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLV-DRGNSIIVI 904
LSGG QRV +A L+ L I DEPTT L A++L++L L ++G ++I+I
Sbjct: 154 LSGGMRQRVMIAMALALNPK---LLIADEPTTALDVTVQAQILDLLKELQREKGTALILI 210
Query: 905 EHNLEVI-KTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSILKNK 959
H+L V+ + AD + G I+ GP E I K P YT L S+ +
Sbjct: 211 THDLGVVAEIADRVAVM------YAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRLG 261
Score = 47.1 bits (112), Expect = 3e-05
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 25/182 (13%)
Query: 431 DESLAVKIAGKHIGEIAD---------MSIKKAQIWFEQLPTQITQKANKISESILKEIQ 481
E KI GK I I M+I Q+ + +S+ KE
Sbjct: 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD------QIAEVLRLHGKGLSKKEAKERA 131
Query: 482 KRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDN 541
+ LV I L + LS G QR+ +A + AL L I DEP+ L
Sbjct: 132 IELLELVGIPDPERRLKSYPHELSGGMRQRVMIA--MALALNPKLLIADEPTTALDVTVQ 189
Query: 542 TKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
++++ LK L R+ G +I++ HD + AD + A + G+IV EG +I
Sbjct: 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRV------AVMYAGRIVEEGPVEEIFK 243
Query: 600 HP 601
+P
Sbjct: 244 NP 245
Score = 33.6 bits (77), Expect = 0.26
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 3 KIKNISI----RGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAF 45
++KN+S+ + +S EL + +++ + G SGSGKS LA
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAK 49
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 65.7 bits (160), Expect = 5e-11
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGG+ QRV LA+ L L +LDEPT+GL +LL +L L + G ++I++
Sbjct: 81 LSGGQRQRVALARALLLNPD---LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 906 HNLEVIKTA-DWILDF 920
H+ E+ + A D ++
Sbjct: 138 HDPELAELAADRVIVL 153
Score = 60.3 bits (146), Expect = 2e-09
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QR+ LA + L +LDEP+ GL +L+ L+ L + G TVI+V H
Sbjct: 81 LSGGQRQRVALARALLLNPD--LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138
Query: 564 D-EETMLAADHIVDI 577
D E LAAD ++ +
Sbjct: 139 DPELAELAADRVIVL 153
Score = 40.7 bits (95), Expect = 0.002
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+I+N+S R L N+S+ L +++ + G +GSGKS+L
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTL 41
Score = 36.8 bits (85), Expect = 0.032
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYID 699
L NV+ ++ G A+ G +G GKST L R I G IDG +
Sbjct: 15 LDNVSLTLKAGEIVALVGPNGSGKSTLL---------RAIAGLLKPTSGEILIDGKDIAK 65
Query: 700 KVVSINQSPIGHTP 713
+ + IG+ P
Sbjct: 66 LPLEELRRRIGYVP 79
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 65.3 bits (159), Expect = 8e-11
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 807 MTVDESLDFFAAIPTIHNK----LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSK 862
TV L + L +VGL + + + LSGG+ QR+ +A+ L
Sbjct: 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158
Query: 863 QATGNTLYILDEPTTGLHYHDIAKLLNILHTLV-DRGNSIIVIEHNLEVI-KTAD--WIL 918
+ L ILDEPT+ L A++LN+L L +RG + + I H+L ++ D ++
Sbjct: 159 EPK---LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215
Query: 919 DFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSILK 957
D G+I+ GP E + P YT + L+++
Sbjct: 216 D--------NGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247
Score = 56.0 bits (135), Expect = 5e-08
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 477 LKEIQKRI-HFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIG 535
L + Q+RI L ++GL L R + LS G+ QRI +A + L ILDEP+
Sbjct: 114 LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL--IPEPKLLILDEPTSA 171
Query: 536 LHQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSP 594
L +++N L L ++ G T + + HD + +H+ D A ++ G+IV G
Sbjct: 172 LDVSVQAQILNLLLELKKERGLTYLFISHD---LALVEHMCD--RIAVMDNGQIVEIGPT 226
Query: 595 SQIIAHPTSLTGK 607
++++HP+ +
Sbjct: 227 EELLSHPSHPYTR 239
Score = 36.0 bits (83), Expect = 0.054
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 1 MSKIKNISIRGAREHN----LQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ ++N+SI L N+S+E+ R + + + G SGSGKS+LA
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLA 50
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 65.2 bits (159), Expect = 9e-11
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L +GL I LS + Q V++A+ LS A + ILDEPT L + +L
Sbjct: 130 LARLGLD-IDPDTLVGDLSIAQRQMVEIARALSFDAR---VLILDEPTAALTVKETERLF 185
Query: 889 NILHTLVDRGNSIIVIEHNL-EVIKTADWI 917
+++ L +G +II I H L EV + AD I
Sbjct: 186 DLIRRLKAQGVAIIYISHRLDEVFEIADRI 215
Score = 55.9 bits (135), Expect = 6e-08
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDI---AKLLNILHTLV 895
Q TLSGG Q+V LA+ L AT + ILDEPT G+ D+ A++ ++ L
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWL---ATDPKVLILDEPTRGI---DVGAKAEIYRLIRELA 448
Query: 896 DRGNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
G +I++I L E++ +D IL G I+ E +E +
Sbjct: 449 AEGKAILMISSELPELLGLSDRILVM------REGRIVGELDREEATEEAI 493
Score = 40.1 bits (94), Expect = 0.003
Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS + Q + +A + + + ILDEP+ L ++ +L + ++ L+ G +I + H
Sbjct: 146 LSIAQRQMVEIARAL--SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203
Query: 564 D-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKYMSG-KMSIKIPEKR 621
+E AD I + + AE S +++ + M G ++ PE
Sbjct: 204 RLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELV--------RLMVGRELEDLFPEPP 255
Query: 622 RQYNPNRMIHVIN-ARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
+ ++ V N + +++V+ ++ G I G+ G G++
Sbjct: 256 EEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELA 302
Score = 28.9 bits (65), Expect = 6.8
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 22/149 (14%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL--------AFD--TIHAEG 52
+++ IS L +S+ + ++ + G +G+GKS+L D I +G
Sbjct: 10 ELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69
Query: 53 QRRYVESLSTYARQFLGTIKKPDVEQIDGLSPTISIEQKNT--SHNPRSTVGTIT--EIH 108
+ V S G V Q L P +S+ + N P G I +
Sbjct: 70 KP--VAFSSPRDALAAGIAT---VHQELSLVPNLSVAE-NIFLGREPTRRFGLIDRKAMR 123
Query: 109 DYLRLLFARIGIPHSPTTGLPIESQTISQ 137
R L AR+G+ P T + +I+Q
Sbjct: 124 RRARELLARLGLDIDPDT--LVGDLSIAQ 150
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 65.2 bits (159), Expect = 9e-11
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
Query: 436 VKIAGKHIGEIADMSIKKAQIWFEQLPT--------QITQKANKISESILKEIQKRI--- 484
+++ G + +++ + +K W Q P I S+ + +
Sbjct: 378 IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437
Query: 485 HFL-VEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTK 543
F+ GLD + + LS G++QR+ LA + S L +LDEP+ L
Sbjct: 438 EFVPKPDGLDTV-IGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQI 494
Query: 544 LINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
++ L+ L TV+V+ H E AD IV ++ G++V +G+ ++
Sbjct: 495 ILQALQELAK-QKTVLVITHRLEDAADADRIVV------LDNGRLVEQGTHEELSEK 544
Score = 63.7 bits (155), Expect = 2e-10
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 830 KEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN 889
K GL + IG+ LSGG++QR+ LA+ L A +L +LDEPT L +L
Sbjct: 442 KPDGLDTV-IGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHLDAETEQIILQ 497
Query: 890 ILHTLVDRGNSIIVIEHNLEVIKTAD--WILDFGPEGGDGGGEIIASGPPEAIAKE 943
L L + +++VI H LE AD +LD G ++ G E ++++
Sbjct: 498 ALQELA-KQKTVLVITHRLEDAADADRIVVLD--------NGRLVEQGTHEELSEK 544
Score = 34.8 bits (80), Expect = 0.11
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L ++++ + +L + G SG+GKS+L
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTL 363
Score = 32.5 bits (74), Expect = 0.62
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L ++ +I G TA+ G SG GKST L
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLL 364
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 64.5 bits (157), Expect = 1e-10
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 38/186 (20%)
Query: 786 RYNPETLQIRFKDKSIADV------------------LSMTVDESLDFFAAIPTIHNKLT 827
Y P+ +I + D+ S ++ E++ T +
Sbjct: 522 LYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIE 581
Query: 828 TLKEVG---------LGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTT 877
+ G +GY +G+ LSGG+ QR+ LA+ L + + +LDE T+
Sbjct: 582 AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK---PKILLLDEATS 638
Query: 878 GLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPP 937
L A +L L + +G ++I+I H L I++AD I+ G+I+ G
Sbjct: 639 ALDPETEAIILQNLLQI-LQGRTVIIIAHRLSTIRSADRIIVL------DQGKIVEQGSH 691
Query: 938 EAIAKE 943
E + +
Sbjct: 692 EELLAQ 697
Score = 46.0 bits (109), Expect = 5e-05
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 490 IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLK 549
+G D +N LS G+ QR+ LA + S + +LDE + L ++ L
Sbjct: 597 MGYDTPVGEGGAN-LSGGQRQRLALARALLSKPK--ILLLDEATSALDPETEAIILQNLL 653
Query: 550 HLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
+ G TVI++ H T+ +AD I+ ++ GKIV +GS +++A
Sbjct: 654 QIL-QGRTVIIIAHRLSTIRSADRIIV------LDQGKIVEQGSHEELLA 696
Score = 38.3 bits (89), Expect = 0.010
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 3 KIKNISIRGAREHN--LQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ +N+S R + L+++S+E+P + + + G SGSGKS+L
Sbjct: 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL 516
Score = 37.5 bits (87), Expect = 0.017
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYK 673
L++++ IP G AI G SG GKST L+ LYK
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 61.6 bits (150), Expect = 1e-09
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ +GL ++ + N LSGGE QRV LA+ L+++ + +LDEPT+ L +LL
Sbjct: 82 LELLGLAHLA-DRPFNELSGGERQRVLLARALAQEPP---ILLLDEPTSHLDIAHQIELL 137
Query: 889 NILHTLV-DRGNSIIVIEHNLE-VIKTAD--WILDFGPEGGDGGGEIIASG 935
+L L +RG +++++ H+L + AD +L G I+A G
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAARYADRVILLK--------DGRIVAQG 180
Score = 53.1 bits (128), Expect = 4e-07
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 464 QITQKANKISESILKEIQKRIHF----LVEIGLDYLTLSRNSNMLSNGESQRIRLASQIG 519
+I ++ KE+ ++I + L +GL +L R N LS GE QR+ LA
Sbjct: 55 EILLDGKDLASLSPKELARKIAYVPQALELLGLAHL-ADRPFNELSGGERQRVLLA---- 109
Query: 520 SALTGV--LYILDEPSIGL---HQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADH 573
AL + +LDEP+ L HQ + +L+ L R+ G TV++V HD AD
Sbjct: 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLAARYADR 167
Query: 574 IVDIGPEAGINGGKIVAEG 592
++ + G+IVA+G
Sbjct: 168 VI------LLKDGRIVAQG 180
Score = 35.4 bits (82), Expect = 0.078
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S+ L ++S+ + +++ + G +G+GKS+L
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTL 41
Score = 32.3 bits (74), Expect = 0.65
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L +++ SI G I G +G GKST L
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLL 42
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 61.1 bits (148), Expect = 1e-09
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 840 GQSANTLSGGESQRVKLAKELSK--QATGNTLYI-LDEPTTGLHYHDIAKLLNILHTLVD 896
G+ TLSGGE QRV+LA+ L++ + ++ LDEPT+ L L + L
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 897 RGNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPP-EAIAKEPLS 946
G +++ + H+L + AD I+ G +IASG P + + E L
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLL------HQGRVIASGSPQDVLTDETLE 235
Score = 49.9 bits (119), Expect = 3e-06
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 485 HFLVEIGLDYLTLSRNSNMLSNGESQRIRLA---SQI-GSALTGVLYILDEPSIGLHQRD 540
L L L R+ LS GE QR++LA +Q+ +G LDEP+ L
Sbjct: 118 QALAATDLSGLA-GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176
Query: 541 NTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
+ + L G V+ V HD AD IV ++ G+++A GSP ++
Sbjct: 177 QHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV------LLHQGRVIASGSPQDVL 229
Score = 30.6 bits (69), Expect = 2.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M + +N+S A L +S++L +++ + G +G+GKS+L
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTL 43
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 60.2 bits (146), Expect = 3e-09
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDT-GNTVIVVE 562
LS G +R+ LA I AL L LDEP+ GL + ++ L D G TVI+V
Sbjct: 146 LSGGMRKRVALARAI--ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVT 203
Query: 563 HDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKYMSGKMSIKIPEK 620
HD +++L AD + + GK++AEG+P +++A ++ +G IP +
Sbjct: 204 HDLDSLLTIADRVAVLA------DGKVIAEGTPEELLASDDPWVRQFFNGIRDGPIPFR 256
Score = 55.2 bits (133), Expect = 9e-08
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGL + LSGG +RV LA+ + A L LDEPT+GL +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAI---ALDPELLFLDEPTSGLDPISAGVID 185
Query: 889 NILHTLVDR-GNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS 946
++ L D G ++I++ H+L ++ AD + G++IA G PE +
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL------ADGKVIAEGTPEELLASDDP 239
Query: 947 YTGKFLKSI 955
+ +F I
Sbjct: 240 WVRQFFNGI 248
Score = 32.4 bits (74), Expect = 0.62
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++ ++ L + +++PR +++ + G SGSGKS+L
Sbjct: 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTL 50
Score = 31.3 bits (71), Expect = 1.4
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 631 HVINARSNN--LKNVTGSIPLGLFTAITGISGGGKSTFL 667
V + + L V +P G AI G SG GKST L
Sbjct: 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLL 51
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 60.0 bits (146), Expect = 3e-09
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LS GE Q V++A+ L++ A L ILDEPT L ++ +L ++ L +G ++I I
Sbjct: 83 LSVGERQMVEIARALARNAR---LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS 139
Query: 906 HNL-EVIKTAD 915
H L EV + AD
Sbjct: 140 HRLDEVFEIAD 150
Score = 41.9 bits (99), Expect = 8e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS GE Q + +A + A L ILDEP+ L + +L ++ LR G VI + H
Sbjct: 83 LSVGERQMVEIARAL--ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Query: 564 D-EETMLAADHIV 575
+E AD +
Sbjct: 141 RLDEVFEIADRVT 153
Score = 28.8 bits (65), Expect = 6.8
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++ I+ R L +S+ + R ++ + G +G+GKS+L
Sbjct: 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTL 42
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 60.0 bits (146), Expect = 3e-09
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 803 DVLSMTVDESLDFFAAI-PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELS 861
+TV E+L F L+ VGL TLSGG+ QRV +A+ L
Sbjct: 47 LFPELTVRENLFFGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALL 106
Query: 862 KQATGNTLYILDEPTT 877
K+ L +LDEPT
Sbjct: 107 KKP---KLLLLDEPTA 119
Score = 29.2 bits (66), Expect = 5.0
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 436 VKIAGKHIGEIADMSIKKAQI-WFEQLPTQITQK--ANKISESILKEIQKR--IHFLVEI 490
+ + G+ +++ + +I Q P + + + + L +
Sbjct: 18 ILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFGLRDKEADARAEEALERV 77
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEP 532
GL LS G+ QR+ +A L +LDEP
Sbjct: 78 GLPDFLDRSPVGTLSGGQKQRVAIA--RALLKKPKLLLLDEP 117
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 59.9 bits (145), Expect = 3e-09
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
+LSGG+ QR+ +A L +G L I DEPT+GL Y ++ ++ ++ L +G ++IVI
Sbjct: 126 SLSGGQKQRLAIAAAL---LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVI 182
Query: 905 EHNLEVI-KTADWIL 918
H+ E + K D +L
Sbjct: 183 THDYEFLAKVCDRVL 197
Score = 47.2 bits (112), Expect = 2e-05
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QR+ +A+ + S L I DEP+ GL ++ ++ ++ L G VIV+ H
Sbjct: 127 LSGGQKQRLAIAAALLSGKD--LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
Query: 564 DEETMLAADHIV 575
D E + V
Sbjct: 185 DYEFLAKVCDRV 196
Score = 34.4 bits (79), Expect = 0.14
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 4 IKNISIRGAREHN-LQNISIELPRNKLIVMTGVSGSGKSSLA 44
I+NIS + L ++S++L ++I +TG +G+GK++LA
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLA 43
Score = 31.0 bits (70), Expect = 1.8
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYK-AAARIIMGSK 683
L +++ + G A+TG +G GK+T +++ L K ++ I++ K
Sbjct: 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 59.3 bits (144), Expect = 5e-09
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 806 SMTVDESLDFFAAIPTIHNKLTTLKEVGLGYI-----KIGQSANTLSGGESQRVKLAKEL 860
+TV+E+L A + L+ V + Q A TLSGGE Q + +A+ L
Sbjct: 89 ELTVEENLLLGAYARRRAKRKARLERV-YELFPRLKERRKQLAGTLSGGEQQMLAIARAL 147
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI-KTAD--WI 917
+ L +LDEP+ GL + ++ + L D G +I+++E N + AD ++
Sbjct: 148 ---MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYV 204
Query: 918 LDFGPEGGDGGGEIIASGPPEAIAKE 943
L+ G ++ G + +
Sbjct: 205 LE--------RGRVVLEGTAAELLAD 222
Score = 51.6 bits (124), Expect = 1e-06
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 497 LSRNSNMLSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQRDNTKLINTLKHLRDT 554
+ + LS GE Q LA I AL L +LDEPS GL + ++ ++ LRD
Sbjct: 126 RKQLAGTLSGGEQQM--LA--IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 555 GNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
G T+++VE + A I D + G++V EG+ ++++A
Sbjct: 182 GVTILLVEQN---ARFALEIADRA--YVLERGRVVLEGTAAELLAD 222
Score = 30.8 bits (70), Expect = 1.8
Identities = 9/41 (21%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N++ + L +S+ +P +++ + G +G+GK++L
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTL 42
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 59.1 bits (143), Expect = 5e-09
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 471 KISESILKEIQKRIHFLVEI-GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYIL 529
K+ EI KR+ + ++ GL++L L+R LS G+ QR+ LA + +++L
Sbjct: 101 KLRGVPKAEIDKRVKEVAKLLGLEHL-LNRKPLQLSGGQRQRVALARAL--VRKPKVFLL 157
Query: 530 DEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGK 587
DEP L + + + +K L G T I V HD E M AD IV + N G+
Sbjct: 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVM------NDGR 211
Query: 588 IVAEGSPSQIIAHPTSL 604
I G+P ++ P +L
Sbjct: 212 IQQVGTPLELYERPANL 228
Score = 36.4 bits (84), Expect = 0.037
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++KN+ L+++++++ + +V+ G SG GKS+L
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTL 45
Score = 35.6 bits (82), Expect = 0.069
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSII 902
LSGG+ QRV LA+ L ++ +++LDEP + L + + + L +R G + I
Sbjct: 132 LQLSGGQRQRVALARALVRKP---KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI 188
Query: 903 VIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSILKNK 959
+ H+ T AD I G I G P + + P + + F+ S N
Sbjct: 189 YVTHDQVEAMTLADRI------VVMNDGRIQQVGTPLELYERPANLFVAGFIGSPPMNF 241
Score = 31.4 bits (71), Expect = 1.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
LK+V I G F + G SG GKST L R+I G
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLL---------RMIAG 51
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 58.7 bits (142), Expect = 6e-09
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 479 EIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLH 537
EI+ ++H L++ + LD+L R LS G+ QR+ LA + A+ + +LDEP L
Sbjct: 112 EIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRVALARAL--AVEPKVLLLDEPFGALD 168
Query: 538 QRDNTKLINTLKHLRD-TGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPS 595
+ +L L+ L D T + V HD EE + AD +V + N G+I G+P
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM------NKGRIEQVGTPD 222
Query: 596 QIIAHPTS 603
++ HP S
Sbjct: 223 EVYDHPAS 230
Score = 34.9 bits (80), Expect = 0.11
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S R L ++S+++P +L+ + G SGSGK++L
Sbjct: 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTL 44
Score = 33.7 bits (77), Expect = 0.26
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN--SI 901
LSGG+ QRV LA+ L A + +LDEP L +L L L D + ++
Sbjct: 135 AQLSGGQRQRVALARAL---AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTV 191
Query: 902 IVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS 946
V E ++ AD ++ G I G P+ + P S
Sbjct: 192 FVTHDQEEALEVADRVVVMNK------GRIEQVGTPDEVYDHPAS 230
Score = 29.1 bits (65), Expect = 5.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 613 MSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL--IST 670
MSI++ +++ L +V+ IP G A+ G SG GK+T L I+
Sbjct: 1 MSIEVRNVSKRFG----------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50
Query: 671 LYKA-AARIIMGSK 683
L + + I+ G +
Sbjct: 51 LERPDSGTILFGGE 64
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 58.3 bits (141), Expect = 9e-09
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 12/129 (9%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
KEI++++ + E +G+D+L L+R LS GE QR+ +A + + + +LDEP L
Sbjct: 104 KEIERKVLEIAEMLGIDHL-LNRKPETLSGGEQQRVAIARAL--VVNPKILLLDEPFSAL 160
Query: 537 HQRDNTKLINTLKHLRDT-GNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
R KL LK +R G TV+ V HD EE AD + A + GK++ G P
Sbjct: 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV------AIMLNGKLIQVGKP 214
Query: 595 SQIIAHPTS 603
++ P +
Sbjct: 215 EEVFKKPKN 223
Score = 42.9 bits (101), Expect = 4e-04
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIV 903
TLSGGE QRV +A+ L + +LDEP + L KL L + G +++
Sbjct: 129 TLSGGEQQRVAIARALVVNP---KILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185
Query: 904 IEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSY-TGKFL 952
+ H+ E AD + G++I G PE + K+P + +FL
Sbjct: 186 VTHDFEEAWALADKVAIM------LNGKLIQVGKPEEVFKKPKNEFVAEFL 230
Score = 30.2 bits (68), Expect = 2.8
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
K++N+S +E L+N+S+E+ R V+ G +GSGKS L
Sbjct: 2 KVENLSKDW-KEFKLKNVSLEVERGDYFVILGPTGSGKSVL 41
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 58.2 bits (141), Expect = 9e-09
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 21/149 (14%)
Query: 806 SMTVDESLDFFAAIPT-----IHNKLTT-LKEVGLGYIKIGQSANTLSGGESQRVKLAKE 859
+TV+E++ I KL L+E + +++ A++LSGGE +RV++A+
Sbjct: 89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRVEIARA 147
Query: 860 LSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNL-EVIKTAD--W 916
L AT +LDEP G+ + + I+ L DRG +++ +HN+ E + D +
Sbjct: 148 L---ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY 204
Query: 917 ILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
I+ G+++A G PE IA L
Sbjct: 205 II--------YEGKVLAEGTPEEIAANEL 225
Score = 45.1 bits (107), Expect = 8e-05
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 478 KEIQKRI-HFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
KE ++++ L E + +L S+ S+ LS GE +R+ +A + A +LDEP G+
Sbjct: 108 KEREEKLEELLEEFHITHLRKSKASS-LSGGERRRVEIARAL--ATNPKFLLLDEPFAGV 164
Query: 537 HQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPS 595
+ +K L+D G V++ +H+ ET+ D I GK++AEG+P
Sbjct: 165 DPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII------YEGKVLAEGTPE 218
Query: 596 QIIAHP 601
+I A+
Sbjct: 219 EIAANE 224
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 57.5 bits (139), Expect = 2e-08
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 806 SMTVDESLDFFAAIPTIHNK------LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKE 859
+TV E+++ I L+ +GL + + + LSGG+ QRV +A+
Sbjct: 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156
Query: 860 LSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLV-DRGNSIIVIEHNLEVIKTADWIL 918
L + + DEPT L ++L +L L +RG +II++ H+ E+ K AD ++
Sbjct: 157 LINNP---KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213
Score = 47.8 bits (114), Expect = 1e-05
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
++ L+E +GL+ L + + LS G+ QR+ +A + + + DEP+ L
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL--INNPKIILADEPTGNL 173
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLAADHIVDI 577
+ +++ L+ L ++ G T+I+V HD E AD ++++
Sbjct: 174 DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIEL 215
Score = 38.6 bits (90), Expect = 0.008
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 1 MSKIKNIS----IRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M ++KN+S + G + L+++++E+ + + + G SGSGKS+L
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL 47
Score = 36.3 bits (84), Expect = 0.038
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V I G F AI G SG GKST L
Sbjct: 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLL 48
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 57.6 bits (139), Expect = 2e-08
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI+ R+ +E +GL+ R + LS G+ QR+ LA + VL +LDEP L
Sbjct: 111 AEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARALVPE-PKVL-LLDEPLSAL 167
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
+ ++ LK L R+ G T + V HD EE + +D I + N G+I G+P
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVM------NDGRIEQVGTP 221
Query: 595 SQIIAHPTSL 604
+I P +
Sbjct: 222 EEIYERPATR 231
Score = 47.6 bits (113), Expect = 2e-05
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYH---DIAKLLNILHTLVDRGNSII 902
LSGG+ QRV LA+ L + + +LDEP + L + K L L + G + +
Sbjct: 137 LSGGQQQRVALARALVPEP---KVLLLDEPLSALDAKLREQMRKELKELQR--ELGITFV 191
Query: 903 VIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFL 952
+ H+ E + +D I G I G PE I + P + + F+
Sbjct: 192 YVTHDQEEALAMSDRIAVM------NDGRIEQVGTPEEIYERPATRFVADFI 237
Score = 34.1 bits (78), Expect = 0.21
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+I+N+S + +IS+++ + + + + G SG GK++L
Sbjct: 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTL 47
Score = 32.6 bits (74), Expect = 0.61
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYID 699
+ +++ I G F + G SG GK+T L R+I G + +DG + D
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLL---------RMIAGFEQPSSGEILLDGEDITD 71
Query: 700 KVVSINQSPIG 710
V + PIG
Sbjct: 72 --VPPEKRPIG 80
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 56.8 bits (137), Expect = 3e-08
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L++VGL + + + LSGG+ QR+ +A+ L+ L + DEP + L A++L
Sbjct: 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNP---KLIVADEPVSALDVSVQAQIL 149
Query: 889 NILHTLVDR-GNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS 946
N+L L + G + + I H+L V++ +D I G+I+ GP E + PL
Sbjct: 150 NLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL------GKIVEIGPTEEVFSNPLH 203
Query: 947 -YTGKFLKSI 955
YT L ++
Sbjct: 204 PYTKALLSAV 213
Score = 51.0 bits (122), Expect = 2e-06
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 464 QITQKANKISESILKEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSAL 522
+I + I++ +E ++R+ L+E +GL L R + LS G+ QRI +A + AL
Sbjct: 69 EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL--AL 126
Query: 523 TGVLYILDEPSIGLHQRDNTKLINTLKHLRDT-GNTVIVVEHDEETMLAADHIVDIGPEA 581
L + DEP L +++N LK L++ G T + + HD + + +
Sbjct: 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAV---- 182
Query: 582 GINGGKIVAEGSPSQIIAHPTSLTGKYMSGKMSIKIPEKRRQ 623
+ GKIV G ++ ++P K + + + P RR+
Sbjct: 183 -MYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPVPDPRLRRK 223
Score = 31.4 bits (71), Expect = 1.3
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ + + +S + + + + G SG GKS+L
Sbjct: 15 PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLG 56
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 56.6 bits (136), Expect = 3e-08
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
+G+ LSGG+ QR+ +A+ L + + ILDE T+ L A + + L L+ +
Sbjct: 458 IVGERGVNLSGGQRQRLAIARALLRNP---PILILDEATSALDTETEALIQDALKKLL-K 513
Query: 898 GNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAK 942
G + ++I H L IK AD I+ G I+ G E +
Sbjct: 514 GRTTLIIAHRLSTIKNADRIIVLDN------GRIVERGTHEELLA 552
Score = 51.2 bits (122), Expect = 1e-06
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 486 FLVEIGLDYLT-LSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKL 544
F+ + Y T + LS G+ QR+ +A + + ILDE + L +
Sbjct: 447 FIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP--ILILDEATSALDTETEALI 504
Query: 545 INTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
+ LK L G T +++ H T+ AD I+ + G+IV G+ +++A
Sbjct: 505 QDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDN------GRIVERGTHEELLAK 553
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 56.3 bits (136), Expect = 3e-08
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+E + +++ A +LSGGE +RV++A+ L A +LDEP G+ + +
Sbjct: 124 LEEFHITHLR-DSKAYSLSGGERRRVEIARAL---AANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 889 NILHTLVDRGNSIIVIEHN----LEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
I+ L DRG +++ +HN L++ A I D G+++A G PE I
Sbjct: 180 RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD---------GKVLAEGSPEEIVNNE 230
Query: 945 L 945
Sbjct: 231 D 231
Score = 42.9 bits (101), Expect = 4e-04
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 472 ISESILKEIQKRIH---FLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYI 528
I E LK+ +++ L E + +L S+ + LS GE +R+ +A + A +
Sbjct: 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYS-LSGGERRRVEIARAL--AANPKFIL 162
Query: 529 LDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGK 587
LDEP G+ + +KHL+D G V++ +H+ ET+ D I + GK
Sbjct: 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII------SDGK 216
Query: 588 IVAEGSPSQIIAHP 601
++AEGSP +I+ +
Sbjct: 217 VLAEGSPEEIVNNE 230
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 56.3 bits (136), Expect = 4e-08
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ +GL ++ + + LSGGE QRV +A+ L A + +LDEPT+ L ++L
Sbjct: 123 LELLGLEHLA-DRPVDELSGGERQRVLIARAL---AQETPILLLDEPTSHLDIAHQIEVL 178
Query: 889 NILHTLVDRGN-SIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
+L L +++++ H+L + AD ++ G+I+A G PE +
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILL------KDGKIVAQGTPEEV 226
Score = 50.6 bits (121), Expect = 2e-06
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSAL---TGVLYILDEPSI 534
++ + L +GL++L R + LS GE QR+ +A AL T +L +LDEP+
Sbjct: 114 EDEEIVEEALELLGLEHL-ADRPVDELSGGERQRVLIAR----ALAQETPIL-LLDEPTS 167
Query: 535 GLHQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEG 592
L +++ L+ L R+ G TV++V HD ADH++ + GKIVA+G
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI------LLKDGKIVAQG 221
Query: 593 SPSQII 598
+P +++
Sbjct: 222 TPEEVL 227
Score = 36.7 bits (85), Expect = 0.029
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M +++N+S + L ++S +P+ ++ + G +GSGKS+L
Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTL 44
Score = 32.8 bits (75), Expect = 0.47
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARII 679
L +++ SIP G T I G +G GKST L K A ++
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLL-----KCLAGLL 52
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 56.2 bits (136), Expect = 4e-08
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGG QR+ LA+ L L ILDEPT+GL + +L L G +I++
Sbjct: 96 LSGGMKQRLALAQALLHDPE---LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152
Query: 906 HNL-EVIKTADWIL 918
H L E + D +
Sbjct: 153 HILEEAERLCDRVA 166
Score = 43.5 bits (103), Expect = 3e-04
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNM-LSNGESQRIRLASQIGSALTG--VLYILDEPSI 534
+E+++RI +L E Y L+ N+ LS G QR+ LA AL L ILDEP+
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQ----ALLHDPELLILDEPTS 124
Query: 535 GLHQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKI 588
GL + L+ L+ G T+++ H EE D + A +N G+I
Sbjct: 125 GLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRV------AILNNGRI 173
Score = 31.2 bits (71), Expect = 1.6
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S R ++ L +IS+ + + ++ + G +G+GK++L
Sbjct: 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTL 42
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 56.2 bits (136), Expect = 5e-08
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIV 903
N LSGG+ QR+ +A+ L + + ILDE T+ L A +L L L +G ++IV
Sbjct: 95 NILSGGQRQRIAIARALLRDP---PILILDEATSALDPETEALILEALRAL-AKGKTVIV 150
Query: 904 IEHNLEVIKTADWIL 918
I H L I+ AD I+
Sbjct: 151 IAHRLSTIRDADRII 165
Score = 47.7 bits (114), Expect = 1e-05
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
N+LS G+ QRI +A + + ILDE + L ++ L+ L G TVIV+
Sbjct: 95 NILSGGQRQRIAIARALLRDPP--ILILDEATSALDPETEALILEALRALAK-GKTVIVI 151
Query: 562 EHDEETMLAADHIV 575
H T+ AD I+
Sbjct: 152 AHRLSTIRDADRII 165
Score = 38.5 bits (90), Expect = 0.009
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 KIKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ KN+S G + L+++S+ + + + + G SGSGKS+L
Sbjct: 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL 45
Score = 36.9 bits (86), Expect = 0.028
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYK 673
LK+V+ +I G AI G SG GKST L+ LY
Sbjct: 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 56.1 bits (135), Expect = 5e-08
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATG 866
++V E+L F+ A + L VGL + + LS G+ +RV LA+ L +G
Sbjct: 88 LSVLENLRFWHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLL---LSG 143
Query: 867 NTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEH 906
L+ILDEPTT L +A+ + RG +++ H
Sbjct: 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
Score = 28.8 bits (64), Expect = 6.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
LS G+ +R+ LA + S L+ILDEP+ L + + + G V++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRP--LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
Query: 562 EH 563
H
Sbjct: 182 TH 183
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 55.9 bits (135), Expect = 5e-08
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LS GE QRV++ K L + A L ILDEPT L + +L IL L G +II I
Sbjct: 141 LSVGEQQRVEILKALYRGAR---LLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFIT 197
Query: 906 HNL-EVIKTAD 915
H L EV+ AD
Sbjct: 198 HKLKEVMAIAD 208
Score = 51.3 bits (123), Expect = 1e-06
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 24/219 (10%)
Query: 477 LKEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIG 535
++ + RI L E GL + LS GE QR+ + + L ILDEP+
Sbjct: 114 RRQARARIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKAL--YRGARLLILDEPTAV 170
Query: 536 LHQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
L ++ +L L+ L G T+I + H +E M AD + + GK+V P
Sbjct: 171 LTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV------LRRGKVVGTVDP 224
Query: 595 SQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMI------HVINARSNN-LKNVTGSI 647
L + M G+ + + + P ++ V + R +K+V+ +
Sbjct: 225 VAETT-EEELA-ELMVGR-EVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEV 281
Query: 648 PLGLFTAITGISGGGKSTFL--ISTLYKAAA-RIIMGSK 683
G I G++G G+S + IS L K A+ RI++ K
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320
Score = 49.8 bits (119), Expect = 3e-06
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
A +LSGG Q++ LA+EL A L I +PT GL I + L L D G
Sbjct: 397 PDAPARSLSGGNQQKLILAREL---ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453
Query: 899 NSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
++++I +L E+++ +D I G I+ PPE +E +
Sbjct: 454 KAVLLISEDLDEILELSDRIAVI------YEGRIVGIVPPEEATREEI 495
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 55.6 bits (134), Expect = 6e-08
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 38/167 (22%)
Query: 787 YNPETLQIRFKDKSIADVLSMTVDESL-------DFFAAIPTIHNKLTT----------- 828
++P+ I IA + + E++ F+ T+ + L
Sbjct: 388 WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLANPDASDEELW 445
Query: 829 --LKEVGLGYI----------KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPT 876
L++VGL + +G+ LSGGE +R+ LA+ L A L++LDEPT
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA---PLWLLDEPT 502
Query: 877 TGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWI--LDFG 921
GL ++L +L G +++++ H L ++ D I LD G
Sbjct: 503 EGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNG 548
Score = 42.9 bits (101), Expect = 5e-04
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTL-KHLRDTGNTVIVVE 562
LS GE +R+ LA + L++LDEP+ GL +++ L +H G T+++V
Sbjct: 475 LSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVT 530
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
H + D I+ ++ GKI+ EG+ ++++A
Sbjct: 531 HRLRGLERMDRII------VLDNGKIIEEGTHAELLA 561
Score = 29.4 bits (66), Expect = 4.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 KIKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+++N+S G + L+N ++ L + + + + G SGSGKS+L
Sbjct: 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 55.6 bits (134), Expect = 7e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN---ILHTLV 895
+ + + LSGGE QRV +A L + A +Y DEP++ Y DI + LN ++ L
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDAD---VYFFDEPSS---YLDIRQRLNAARVIRELA 260
Query: 896 DRGNSIIVIEHNLEVIKTADWILDF 920
+ G +IV+EH+L V+ D++ DF
Sbjct: 261 EDGKYVIVVEHDLAVL---DYLSDF 282
Score = 54.1 bits (130), Expect = 2e-07
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 790 ETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHN----KLTTLKEVGLGYIKIGQSANT 845
E L++ +K + I+ TV++ L +AI + K +K + L + + + +
Sbjct: 399 EDLKVSYKPQYISPDYDGTVEDLL--RSAIRSAFGSSYFKTEIVKPLNLEDL-LERPVDE 455
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN----ILHTLVDRGNSI 901
LSGGE QRV +A LS++A LY+LDEP+ Y D+ + + I + + +
Sbjct: 456 LSGGELQRVAIAAALSREA---DLYLLDEPSA---YLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 902 IVIEHNLEVIK-TADWILDFGPEGGDGGGEIIASGP 936
+V++H++ +I +D ++ F E G G AS P
Sbjct: 510 LVVDHDIYMIDYVSDRLIVFEGEPGKHG---HASPP 542
Score = 48.7 bits (116), Expect = 8e-06
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 38/238 (15%)
Query: 451 IKKAQIWFEQLPTQITQKANKISESILKEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQ 510
+ K Q + + +P + K ++ + + E K + +GL+ + L R+ + LS GE Q
Sbjct: 164 VHKPQ-YVDLIPKVVKGKVGELLKKV-DERGKFDEVVERLGLENV-LDRDVSELSGGELQ 220
Query: 511 RIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLA 570
R+ +A+ + +Y DEPS L R ++ L + G VIVVEHD +
Sbjct: 221 RVAIAAAL--LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD---LAV 275
Query: 571 ADHIVDIGPEAGINGGKIVAEGSPSQ--IIAHPTSL---TGKYMSGKMS----------I 615
D++ D + G P +++ P S+ +Y+ G + I
Sbjct: 276 LDYLSDFV---------HILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRPEEI 326
Query: 616 KIPEK--RRQYNPNRMI----HVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
+ EK R + ++ L+ G I G I G +G GK+TF+
Sbjct: 327 EFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFV 384
Score = 41.7 bits (98), Expect = 0.001
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 490 IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL--HQRDN-TKLIN 546
+ L+ L L R + LS GE QR+ +A+ + LY+LDEPS L QR K+I
Sbjct: 443 LNLEDL-LERPVDELSGGELQRVAIAAALSREAD--LYLLDEPSAYLDVEQRIIVAKVIR 499
Query: 547 TLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPS 595
+ + T +VV+HD + D++ D IV EG P
Sbjct: 500 RF--IENNEKTALVVDHD---IYMIDYVSD---------RLIVFEGEPG 534
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 55.5 bits (134), Expect = 7e-08
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIV 903
N LSGG+ QR+ LA+ L + +LDEP + L L + L G + IV
Sbjct: 95 NILSGGQRQRLGLARALYGNPR---ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151
Query: 904 IEHNLEVIKTADWIL 918
I H E + +AD IL
Sbjct: 152 IAHRPETLASADRIL 166
Score = 48.2 bits (115), Expect = 1e-05
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 502 NMLSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559
N+LS G+ QR+ LA AL G + +LDEP+ L L + L+ G T I
Sbjct: 95 NILSGGQRQRLGLAR----ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150
Query: 560 VVEHDEETMLAADHIVDI 577
V+ H ET+ +AD I+ +
Sbjct: 151 VIAHRPETLASADRILVL 168
Score = 38.6 bits (90), Expect = 0.009
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 4 IKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
++N+S R GA L+N+S + + + + G SGSGKS+LA
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLA 45
Score = 34.0 bits (78), Expect = 0.20
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L+NV+ SI G AI G SG GKST
Sbjct: 18 LRNVSFSIEPGESLAIIGPSGSGKSTLA 45
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 55.5 bits (134), Expect = 7e-08
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L++VGL K LSGG+ QRV +A+ L A + + DEPT+ L + ++L
Sbjct: 121 LEKVGLAD-KADAYPAQLSGGQQQRVAIARAL---AMDPKVMLFDEPTSALDPELVGEVL 176
Query: 889 NILHTLVDRGNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS- 946
+++ L + G ++I++ H + + AD ++ G+II GPPE P S
Sbjct: 177 DVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ------GKIIEEGPPEEFFDNPKSE 230
Query: 947 YTGKFLKSIL 956
T +FL IL
Sbjct: 231 RTRQFLSKIL 240
Score = 47.4 bits (113), Expect = 2e-05
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
LS G+ QR+ +A + A+ + + DEP+ L ++++ +K L + G T+I+V
Sbjct: 135 AQLSGGQQQRVAIARAL--AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIV 192
Query: 562 EHDEE-TMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS 603
H+ AD ++ + + GKI+ EG P + +P S
Sbjct: 193 THEMGFAREVADRVIFM------DQGKIIEEGPPEEFFDNPKS 229
Score = 37.8 bits (88), Expect = 0.014
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M +IKN+S + L+ IS+ + + +++V+ G SGSGKS+L
Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTL 44
Score = 33.5 bits (77), Expect = 0.29
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK ++ S+ G I G SG GKST L
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLL 45
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 55.2 bits (133), Expect = 8e-08
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
Q+ I L E+GLD T +R + S G+ QRI +A + L L +LDEP+ L +
Sbjct: 404 QRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL--ILKPELILLDEPTSALDRSV 461
Query: 541 NTKLINTLKHL-RDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
++++ L+ L + G + + + HD + A H V + + GKIV +G + A
Sbjct: 462 QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV-----MRDGKIVEQGPTEAVFA 516
Query: 600 HPTS 603
+P
Sbjct: 517 NPQH 520
Score = 52.5 bits (126), Expect = 5e-07
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 826 LTTLKEVGL--GYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHD 883
L L+ VG+ ++ + LSGG+ QRV +A L A L I DEPTT L
Sbjct: 136 LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL---ANEPDLLIADEPTTALDVTV 192
Query: 884 IAKLLNILHTLVDR-GNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIA 941
A++L++L L G +I+ I H+L +++ AD + GEI+ +G E +
Sbjct: 193 QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH------GEIVETGTTETLF 246
Query: 942 KEPL-SYTGKFLKS 954
P YT K L +
Sbjct: 247 AAPQHPYTRKLLAA 260
Score = 50.2 bits (120), Expect = 3e-06
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+EVGL + + SGG+ QR+ +A+ L L +LDEPT+ L A++L
Sbjct: 410 LEEVGLDPATRNRYPHEFSGGQRQRIAIARAL---ILKPELILLDEPTSALDRSVQAQVL 466
Query: 889 NILHTLVDR-GNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS 946
++L L + G S + I H+L V++ ++ G+I+ GP EA+ P
Sbjct: 467 DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM------RDGKIVEQGPTEAVFANPQH 520
Query: 947 -YTGKFLKSIL 956
YT L +
Sbjct: 521 EYTRALLAAAF 531
Score = 34.4 bits (79), Expect = 0.13
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 19 NISIELPRNKLIVMTGVSGSGKSSLA---FDTIHAEGQRRYV-ESLSTYARQFLGTIKKP 74
IS+ L R + + + G SGSGKS+L I ++G+ R+ + + +R+ + +P
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEM----RP 360
Query: 75 DVEQIDGLSPTISIEQKNTSHNPRSTVGTITE 106
++ + + S +PR TVG I E
Sbjct: 361 LRRRMQ-----VVFQDPYGSLSPRMTVGQIIE 387
Score = 32.9 bits (75), Expect = 0.49
Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 45/190 (23%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVE 562
LS G+ QR+ +A + A L I DEP+ L ++++ LK L + G ++ +
Sbjct: 158 LSGGQRQRVMIA--MALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215
Query: 563 HDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQIIAHP-------------------- 601
HD + AD + + G+IV G+ + A P
Sbjct: 216 HDLGIVRKFADRV------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL 269
Query: 602 -----TSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAIT 656
L + + IK RR + R + I+ + G +
Sbjct: 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT----------LRRGQTLGLV 319
Query: 657 GISGGGKSTF 666
G SG GKST
Sbjct: 320 GESGSGKSTL 329
Score = 31.7 bits (72), Expect = 0.94
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 3 KIKNISIRGAREHN----LQNISIELPRNKLIVMTGVSGSGKS--SLAFDTIHAEGQRRY 56
I+N+S+ +E ++ IS ++ + + + G SGSGKS +L+ + +
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 57 VESLSTYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVG 102
+ + L + + + G + ++ TS NP T+G
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIG 113
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 54.3 bits (131), Expect = 2e-07
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDT-GNTVIVVE 562
LS G +R+ LA + AL L + DEP+ GL + + + ++ L+ G T I+V
Sbjct: 137 LSGGMKKRVALARAL--ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194
Query: 563 HDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
HD +T A AD I + GKIVAEG+P ++ A
Sbjct: 195 HDLDTAFAIADRIAVLY------DGKIVAEGTPEELRASD 228
Score = 48.9 bits (117), Expect = 6e-06
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVI 904
LSGG +RV LA+ L A L + DEPT GL + +++ +L G + I++
Sbjct: 137 LSGGMKKRVALARAL---ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV 193
Query: 905 EHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAK 942
H+L AD I G+I+A G PE +
Sbjct: 194 THDLDTAFAIADRIAVL------YDGKIVAEGTPEELRA 226
Score = 35.1 bits (81), Expect = 0.097
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++ ++ L+ + +++ R +++ + G SGSGKS+L
Sbjct: 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTL 42
Score = 32.0 bits (73), Expect = 0.90
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK V + G AI G SG GKST L
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLL 43
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 54.2 bits (130), Expect = 2e-07
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI+ R+ L+ + L+ L R LS G+ QR+ LA + A+ + +LDEP L
Sbjct: 112 AEIRARVEELLRLVQLEGLA-DRYPAQLSGGQRQRVALARAL--AVEPKVLLLDEPFGAL 168
Query: 537 HQRDNTKLINTLKHLRD-TGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
+ +L L+ L D G T + V HD EE + AD +V + N G+I G P
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL------NQGRIEQVGPP 222
Query: 595 SQIIAHPTSLTGKYMSG 611
++ HP S G
Sbjct: 223 DEVYDHPASRFVARFLG 239
Score = 44.6 bits (105), Expect = 1e-04
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 822 IHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881
+ L ++ GL Q LSGG+ QRV LA+ L A + +LDEP L
Sbjct: 118 VEELLRLVQLEGLADRYPAQ----LSGGQRQRVALARAL---AVEPKVLLLDEPFGALDA 170
Query: 882 HDIAKLLNILHTLVDR-GNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEA 939
+L L L DR G + + + H+ E ++ AD ++ G I GPP+
Sbjct: 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL------NQGRIEQVGPPDE 224
Query: 940 IAKEPLS 946
+ P S
Sbjct: 225 VYDHPAS 231
Score = 37.6 bits (87), Expect = 0.016
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+I N+ R L +IS+++ +L+ + G SG+GKS+L
Sbjct: 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTL 44
Score = 30.7 bits (69), Expect = 1.9
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 19/69 (27%)
Query: 613 MSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLY 672
MSI+I ++++ L +++ I G A+ G SG GKST L
Sbjct: 1 MSIRINNVKKRFG----------AFGALDDISLDIKSGELVALLGPSGAGKSTLL----- 45
Query: 673 KAAARIIMG 681
RII G
Sbjct: 46 ----RIIAG 50
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 54.3 bits (131), Expect = 2e-07
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGG Q+V LA+ L A + ILDEPT G+ A++ ++ L D G ++++I
Sbjct: 105 LSGGNQQKVVLARWL---ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 906 HNL-EVIKTADWIL 918
L E++ D IL
Sbjct: 162 SELDELLGLCDRIL 175
Score = 30.0 bits (68), Expect = 3.1
Identities = 10/42 (23%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+++ +S++GA ++++S E+ +++ + G+ G+G++ LA
Sbjct: 6 EVRGLSVKGA----VRDVSFEVRAGEIVGIAGLVGNGQTELA 43
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 53.9 bits (130), Expect = 2e-07
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
+ Q A TLSGGE Q + +A+ L + L +LDEP+ GL + ++ + L
Sbjct: 129 RRNQRAGTLSGGEQQMLAIARALMSRP---KLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 898 -GNSIIVIEHNL-EVIKTAD--WILDFGPEGGDGGGEIIASGPPEAIAKEP 944
G +I+++E N ++ AD ++L+ G I+ SG + +P
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLE--------NGRIVLSGTAAELLADP 228
Score = 44.7 bits (106), Expect = 1e-04
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 497 LSRNSNMLSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQRDNTKLINTLKHLRD- 553
++ + LS GE Q LA I AL L +LDEPS GL + ++ +K LR
Sbjct: 130 RNQRAGTLSGGEQQM--LA--IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 554 TGNTVIVVEHDEETMLAADHIVDIGPEAGI-NGGKIVAEGSPSQIIAHP 601
G T+++VE + A ++I + G+IV G+ ++++A P
Sbjct: 186 GGMTILLVEQN------ARFALEIADRGYVLENGRIVLSGTAAELLADP 228
Score = 33.5 bits (77), Expect = 0.29
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M +++N+S + L+ +S+E+ R +++ + G +G+GK++L
Sbjct: 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTL 45
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 53.6 bits (129), Expect = 3e-07
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGLG ++ + LSGG+ QRV +A+ L+ + + DEPT L +++
Sbjct: 125 LERVGLGD-RLNHYPSELSGGQQQRVAIARALANDP---KIILADEPTGNLDSETGKEVM 180
Query: 889 NILHTLV-DRGNSIIVIEHNLEVIKTADWIL 918
+L L + G +I+V+ H+ E+ + AD I+
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRII 211
Score = 44.3 bits (105), Expect = 2e-04
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 472 ISESILKEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG--VLYI 528
++ KE ++R L+E +GL L+ + LS G+ QR+ +A AL + +
Sbjct: 109 LAGVPKKERRERAEELLERVGLGDR-LNHYPSELSGGQQQRVAIAR----ALANDPKIIL 163
Query: 529 LDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLAADHIVDI 577
DEP+ L +++ L+ L ++ G T++VV HD E AD I+++
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIEL 213
Score = 37.4 bits (87), Expect = 0.019
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL--ISTL 671
LK V+ SI G F AI G SG GKST L + L
Sbjct: 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53
Score = 33.2 bits (76), Expect = 0.33
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 3 KIKNISIR----GAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++KN+S G + L+ +S+ + + + + + G SGSGKS+L
Sbjct: 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL 46
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 53.3 bits (128), Expect = 3e-07
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 503 MLSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIV 560
LS G+ QRI LA AL G L +LDEP+ L L + + G TV+V
Sbjct: 472 TLSGGQRQRIALAR----ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 561 VEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
+ H + + D I+ + G+I A G +++A
Sbjct: 528 IAHRPSALASVDKIL------VLQDGRIAAFGPREEVLAK 561
Score = 51.0 bits (122), Expect = 2e-06
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 835 GY-IKIGQSANTLSGGESQRVKLAKELSKQATGN-TLYILDEPTTGLHYHDIAKLLNILH 892
GY +IG+ TLSGG+ QR+ LA+ L G+ L +LDEP + L A L +
Sbjct: 461 GYDTRIGEGGATLSGGQRQRIALARAL----YGDPFLVVLDEPNSNLDSEGEAALAAAIL 516
Query: 893 TLVDRGNSIIVIEHNLEVIKTADWIL--------DFGPE 923
RG +++VI H + + D IL FGP
Sbjct: 517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPR 555
Score = 31.0 bits (70), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
G ++ L+ IS L + + + G SGSGKS+LA
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLA 379
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 53.3 bits (128), Expect = 3e-07
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN---ILHTLVDRGNSII 902
LSGGE QRV +A L++ A Y DEP++ Y DI + LN ++ L + N ++
Sbjct: 140 LSGGELQRVAIAAALARDAD---FYFFDEPSS---YLDIKQRLNAARLIRELAEDDNYVL 193
Query: 903 VIEHNLEVIKTADWILDF 920
V+EH+L V+ D++ D+
Sbjct: 194 VVEHDLAVL---DYLSDY 208
Score = 46.8 bits (111), Expect = 3e-05
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 451 IKKAQIWFEQLPTQITQKANKISESILKEIQKRIHF--LVE-IGLDYLTLSRNSNMLSNG 507
I K Q + + +P + K +LK+ +R LV+ + L ++ L RN + LS G
Sbjct: 90 IVKPQ-YVDLIPKAVKGKV----GELLKKKDERGKLDELVDQLELRHV-LDRNIDQLSGG 143
Query: 508 ESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHD 564
E QR+ +A+ + A Y DEPS L + ++ L + N V+VVEHD
Sbjct: 144 ELQRVAIAAAL--ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 53.0 bits (127), Expect = 4e-07
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+EV + +I T SGG QR+++A+ L T L +DEPT GL A+LL
Sbjct: 135 LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL---VTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 889 NILHTLV-DRGNSIIVIEHNLEVIK-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS 946
++L LV + G +++++ H+L V + AD ++ G+++ SG + + +P
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM------KQGQVVESGLTDRVLDDPHH 245
Query: 947 -YTGKFLKSILKN 958
YT + S+L+
Sbjct: 246 PYTQLLVSSVLQV 258
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 52.1 bits (125), Expect = 6e-07
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLS-RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIG 535
++I++R L+ +GLD + R + LS G+ QR+ +A + A L ++DEP
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL--AADPPLLLMDEPFGA 165
Query: 536 LHQRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGS 593
L +L K L ++ G T++ V HD +E AD I A + G+IV G+
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRI------AIMKNGEIVQVGT 219
Query: 594 PSQIIAHPTS 603
P +I+ P +
Sbjct: 220 PDEILRSPAN 229
Score = 34.8 bits (80), Expect = 0.10
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVI 904
LSGG+ QRV +A+ L A L ++DEP L +L L G +I+ +
Sbjct: 136 LSGGQQQRVGVARAL---AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV 192
Query: 905 EHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILK 957
H++ E + AD I GEI+ G P+ I + P + F+ +
Sbjct: 193 THDIDEAFRLADRIAIM------KNGEIVQVGTPDEILRSPAN---DFVAEFVG 237
Score = 32.1 bits (73), Expect = 0.77
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 3 KIKNIS-IRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+ +N++ G + + N+++E+ + + +V+ G SGSGK++
Sbjct: 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTT 43
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 52.2 bits (125), Expect = 7e-07
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 478 KEIQKRIHFLVE-IGLD-YLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIG 535
+ I+KR L++ +GLD R + LS G+ QR+ +A + A + ++DEP
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL--AADPPILLMDEPFGA 165
Query: 536 LHQRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGS 593
L +L +K L ++ G T++ V HD +E + AD I A ++ G+IV +
Sbjct: 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI------AVMDAGEIVQYDT 219
Query: 594 PSQIIAHP 601
P +I+A+P
Sbjct: 220 PDEILANP 227
Score = 41.4 bits (97), Expect = 0.001
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 829 LKEVGLGYIKIGQS-ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L VGL + + LSGG+ QRV +A+ L A + ++DEP L +L
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARAL---AADPPILLMDEPFGALDPITRKQL 174
Query: 888 LNILHTLVDR-GNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
+ L G +I+ + H++ E +K AD I GEI+ P+ I P
Sbjct: 175 QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVM------DAGEIVQYDTPDEILANP 227
Score = 33.7 bits (77), Expect = 0.26
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M + +N+S R + + ++++ + + +V+ G SGSGK++
Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTT 43
Score = 29.5 bits (66), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
+ +V +I G F + G SG GK+T L
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL 44
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 52.1 bits (125), Expect = 7e-07
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI++R+ ++ + L+ +R + LS G+ QR+ +A + + +LDEP L
Sbjct: 105 AEIKERVAEALDLVQLEGY-ANRKPSQLSGGQQQRVAIARAL--VNEPKVLLLDEPLGAL 161
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
+ + LK L ++ G T + V HD EE + +D I A +N GKI G+P
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI------AVMNKGKIQQIGTP 215
Query: 595 SQIIAHPTSL 604
+I P +
Sbjct: 216 EEIYEEPANR 225
Score = 33.6 bits (77), Expect = 0.24
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVI 904
LSGG+ QRV +A+ L + + +LDEP L + L L G + + +
Sbjct: 131 LSGGQQQRVAIARALVNEP---KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV 187
Query: 905 EHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL-SYTGKFL 952
H+ E + +D I G+I G PE I +EP + F+
Sbjct: 188 THDQEEALTMSDRIAVMNK------GKIQQIGTPEEIYEEPANRFVADFI 231
Score = 29.4 bits (66), Expect = 4.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S L +S+++ + + G SG GK++L
Sbjct: 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTL 42
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 52.2 bits (125), Expect = 7e-07
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 835 GYIKI-GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHT 893
GY + G+ LSGGE QRV LA+ K A + +LDE T+ L ++L+++
Sbjct: 476 GYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALDSETEREILDMIMD 532
Query: 894 LVDRGNSIIVIEHNLEVIKTADWIL 918
++ G ++I+I H L+++K D I+
Sbjct: 533 VM-SGRTVIMIVHRLDLLKDFDKII 556
Score = 41.0 bits (96), Expect = 0.002
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 427 YRLKDESLAVKIAGKHIGEIADMSIKKA--------QIWFEQLPTQITQKANKISESILK 478
R D S ++ I G+ I E++ S++++ ++ + + I S+ +
Sbjct: 399 LRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458
Query: 479 EIQKR--IHFLVE-IGLDYLTL-SRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSI 534
E KR +H ++ + Y TL MLS GE QR+ LA + +LDE +
Sbjct: 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF--LKDAPILLLDEATS 516
Query: 535 GLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSP 594
L ++++ + + G TVI++ H + + D I+ ++ G + G+
Sbjct: 517 ALDSETEREILDMIMDVMS-GRTVIMIVHRLDLLKDFDKII------VLDNGTVKEYGTH 569
Query: 595 SQIIAHPTSLTGKYMSGKMS 614
S+++A P+ L + + S
Sbjct: 570 SELLA-PSELYADLWTTQTS 588
Score = 34.1 bits (78), Expect = 0.20
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 614 SIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
SI+ + Y P R + LK V+ +IP G AI G +G GKST L
Sbjct: 351 SIEFDDVHFSYGPKRKV---------LKGVSFTIPKGEKVAIVGSNGSGKSTIL 395
Score = 31.0 bits (70), Expect = 1.8
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 IKNISI-RGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++ G + L+ +S +P+ + + + G +GSGKS++
Sbjct: 354 FDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTI 394
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 51.7 bits (124), Expect = 1e-06
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L VGL + + + LSGG+ QRV +A+ L A L I DEPT+ L A++L
Sbjct: 129 LVGVGLPEEVLNRYPHELSGGQRQRVAIARAL---ALNPKLLIADEPTSALDVSVQAQIL 185
Query: 889 NILHTLVD-RGNSIIVIEHNLEVIK-TADWIL 918
++L L + G +++ I H+L V+ AD +
Sbjct: 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217
Score = 46.3 bits (110), Expect = 5e-05
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 487 LVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLIN 546
LV +GL L+R + LS G+ QR+ +A AL L I DEP+ L ++++
Sbjct: 129 LVGVGLPEEVLNRYPHELSGGQRQRVAIA--RALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 547 TLKHLRD-TGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEG 592
LK L++ G T++ + HD + AD + A + GKIV EG
Sbjct: 187 LLKKLQEELGLTLLFITHDLGVVAKIADRV------AVMYAGKIVEEG 228
Score = 35.9 bits (83), Expect = 0.051
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 3 KIKNISI----RGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
++KN+S+ G L ++S + + + + + G SGSGKS+LA
Sbjct: 3 EVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLA 48
Score = 30.1 bits (68), Expect = 2.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
L +V+ SI G + G SG GKST AR I+G
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTL---------ARAILG 53
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 51.5 bits (123), Expect = 1e-06
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 838 KIGQSANTLSGGESQRVKLAK---ELSKQAT-GNTLYILDEPTTGLHYHDIAKLLNILHT 893
K+G+S N LSGGE QRV+LA +++ A L +LDEP L + L +L
Sbjct: 118 KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA 177
Query: 894 LVDRGNSIIVIEHNL-EVIKTAD--WILDFGPEGGDGGGEIIASGPPEAIAKEP 944
L +G +I++ H+L ++ A W+L G+++ASG E + P
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLL--------KRGKLLASGRREEVLTPP 223
Score = 48.8 bits (116), Expect = 6e-06
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 497 LSRNSNMLSNGESQRIRLAS---QIGSAL--TGVLYILDEPSIGLHQRDNTKLINTLKHL 551
L R++N LS GE QR+RLA+ QI G L +LDEP L + L L L
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 552 RDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
G +++ HD L H + + GK++A G +++ P
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWL-----LKRGKLLASGRREEVLTPP 223
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 51.4 bits (123), Expect = 1e-06
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
+G+ LSGG+ QR+ +A+ L + + +LDE T+ L +++ +
Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNP---KILLLDEATSALDAES-ERVVQEALDKASK 537
Query: 898 GNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASG-PPEAIAKEPLSYT 948
G + IV+ H L I+ AD I G+I+ G E IA + +
Sbjct: 538 GRTTIVVAHRLSTIRNADKIAVM------EEGKIVEQGTHDELIALGGIYSS 583
Score = 47.9 bits (114), Expect = 1e-05
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QRI +A + + +LDE + L + L G T IVV H
Sbjct: 490 LSGGQKQRIAIARAL--VRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAH 546
Query: 564 DEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKY 608
T+ AD I + GKIV +G+ ++IA L G Y
Sbjct: 547 RLSTIRNADKIA------VMEEGKIVEQGTHDELIA----LGGIY 581
Score = 41.7 bits (98), Expect = 9e-04
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 822 IHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLH 880
HN +++L + GY ++G+ LSGG+ QR+ +A+ + + + +LDE T+ L
Sbjct: 1105 AHNFISSLPQ---GYDTRVGERGVQLSGGQKQRIAIARAILRNP---KILLLDEATSALD 1158
Query: 881 YHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWI 917
+ L + G + IVI H L I+ AD I
Sbjct: 1159 SESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVI 1194
Score = 37.5 bits (87), Expect = 0.017
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKH 550
G D R LS G+ QRI +A I + +LDE + L + L
Sbjct: 1115 GYDTRVGERGVQ-LSGGQKQRIAIARAILRNPK--ILLLDEATSALDSESERVVQEALDR 1171
Query: 551 LRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKY 608
G T IV+ H T+ AD I A + GK+V +G+ +++A G Y
Sbjct: 1172 AM-EGRTTIVIAHRLSTIQNADVI------AVLKNGKVVEQGTHDELLA----KRGIY 1218
Score = 33.3 bits (76), Expect = 0.32
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK V+ IP G A+ G SG GKST +
Sbjct: 369 LKGVSLKIPSGQTVALVGPSGSGKSTLI 396
Score = 31.3 bits (71), Expect = 1.2
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 626 PNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAARIIM 680
P R + L N++ SI G A+ G SG GKST L+ Y A +
Sbjct: 998 PTRPDVPV------LNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048
Score = 29.4 bits (66), Expect = 5.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L N+S+ + + + + G SGSGKS++
Sbjct: 1006 LNNLSLSIRAGQTVALVGPSGSGKSTV 1032
Score = 29.4 bits (66), Expect = 5.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+ +S+++P + + + G SGSGKS+L
Sbjct: 369 LKGVSLKIPSGQTVALVGPSGSGKSTL 395
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 51.4 bits (123), Expect = 1e-06
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 806 SMTVDESLDFFAAI------PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKE 859
+T E+L F+ TI L + GL + +GQ LS G+ +RV LA+
Sbjct: 89 ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQ----LSAGQQRRVALARL 144
Query: 860 LSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEH 906
A L+ILDEP T L +A L ++ +G +++ H
Sbjct: 145 WLSPAP---LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
Score = 29.9 bits (67), Expect = 3.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M + +N+S ++S L + + +TG +G+GK++L
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTL 44
Score = 29.1 bits (65), Expect = 5.8
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ +R+ LA S L+ILDEP L + L + G V++ H
Sbjct: 131 LSAGQQRRVALARLWLSPAP--LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
Query: 564 DE 565
Sbjct: 189 QP 190
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 51.4 bits (123), Expect = 1e-06
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
IG+ LSGG+ QR+ LA+ + + A +Y+LD+P + + H + + RG
Sbjct: 637 IGERGINLSGGQKQRISLARAVYQDAD---IYLLDDPLSAVDAHVGKHIFEECIRGLLRG 693
Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAK 942
++I++ H L+ + AD I+ G+I+ SG E + K
Sbjct: 694 KTVILVTHQLQFLPHADQIIVL------KDGKIVESGTYEELLK 731
Score = 37.9 bits (88), Expect = 0.013
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QRI LA + +Y+LD+P + + G TVI+V H
Sbjct: 644 LSGGQKQRISLARAVYQDAD--IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTH 701
Query: 564 DEETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
+ + AD I+ + GKIV G+ +++
Sbjct: 702 QLQFLPHADQII------VLKDGKIVESGTYEELL 730
Score = 37.2 bits (86), Expect = 0.024
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L++I+ E+ + +L+ + G GSGKSSL
Sbjct: 537 LKDINFEIKKGQLVAVVGPVGSGKSSL 563
Score = 36.4 bits (84), Expect = 0.043
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLA------SQIGSALTGVLYILDEPSIGLHQRDNTKL 544
GLD N S G+ Q + LA S+I +LDE + + + +
Sbjct: 1264 GLDSEVSEGGEN-FSVGQRQLLCLARALLRKSKI--------LVLDEATASVDPETDALI 1314
Query: 545 INTLK-HLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS 603
T++ +D TV+ + H T++ +D ++ ++ G++V SP+++++ S
Sbjct: 1315 QKTIREEFKDC--TVLTIAHRLNTVMDSDRVLV------LDAGRVVEFDSPAELLSDKDS 1366
Query: 604 L 604
L
Sbjct: 1367 L 1367
Score = 32.2 bits (73), Expect = 0.74
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTL 671
LK++ I G A+ G G GKS+ L + L
Sbjct: 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL 568
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 50.9 bits (122), Expect = 1e-06
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLH 537
EI+ R+ L+E+ L+R + LS G+ QR+ LA + A L +LDEP L
Sbjct: 105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL--AREPSLLLLDEPLSALD 162
Query: 538 QRDNTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEG 592
+ +L LK L R+ G T I V HD EE + AD I A +N G+IV G
Sbjct: 163 AKLREELREELKELQRELGITTIYVTHDQEEALALADRI------AVMNEGRIVQVG 213
Score = 38.6 bits (90), Expect = 0.008
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGL + + + LSGG+ QRV LA+ L+++ +L +LDEP + L +L
Sbjct: 115 LELVGLE-GLLNRYPHELSGGQQQRVALARALAREP---SLLLLDEPLSALDAKLREELR 170
Query: 889 N-ILHTLVDRGNSIIVIEHNL-EVIKTADWIL 918
+ + G + I + H+ E + AD I
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIA 202
Score = 35.5 bits (82), Expect = 0.069
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++K +S L ++S+ + + + + G SG GK++L
Sbjct: 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTL 42
Score = 32.8 bits (75), Expect = 0.48
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
L +++ ++ G F A+ G SG GK+T L R+I G
Sbjct: 16 LDDLSLTVEPGEFLALLGPSGCGKTTLL---------RLIAG 48
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 50.9 bits (122), Expect = 2e-06
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 829 LKEVGL-GYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L++ L +K A LSGG+ QR+ LA+ L A + +LDEPT+ L AK+
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARAL---ANEPEVLLLDEPTSALDPISTAKI 180
Query: 888 LNILHTLVDRGNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
++ L +I+++ HN++ + AD G ++ GP E I
Sbjct: 181 EELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLN------GRLVEFGPTEQI 227
Score = 37.8 bits (88), Expect = 0.014
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+++ IP G TA+ G SG GKST L
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLL 43
Score = 35.5 bits (82), Expect = 0.078
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++++++ +H L++IS+++P+ ++ + G SG GKS+L
Sbjct: 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTL 42
Score = 34.8 bits (80), Expect = 0.11
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 428 RLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQIT---QKANKISESILKEI---- 480
RL D G+ + + I + +L ++ QK N SI +
Sbjct: 48 RLNDLIPGAPDEGEVL--LDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGL 105
Query: 481 -------QKRIHFLVEIGL------DYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLY 527
++ + VE L D + ++ LS G+ QR+ LA + A +
Sbjct: 106 RLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL--ANEPEVL 163
Query: 528 ILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGK 587
+LDEP+ L K+ + L+ T+++V H+ M A + D A + G+
Sbjct: 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN---MQQAARVADR--TAFLLNGR 217
Query: 588 IVAEGSPSQI 597
+V G QI
Sbjct: 218 LVEFGPTEQI 227
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 51.0 bits (122), Expect = 2e-06
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 810 DESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNT 868
DE + A IH+K+ + GY +G+ LSGGE QRV +A+ + K
Sbjct: 104 DEEVIEAAKAAQIHDKIMRFPD---GYDTIVGERGLKLSGGEKQRVAIARAILKNP---P 157
Query: 869 LYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGG 928
+ +LDE T+ L H ++ L + +G + IVI H L I AD I+
Sbjct: 158 ILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVL------KD 210
Query: 929 GEIIASGPPE 938
G I+ G E
Sbjct: 211 GRIVERGTHE 220
Score = 40.2 bits (94), Expect = 0.003
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 503 MLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVE 562
LS GE QR+ +A I + +LDE + L ++ L+ + G T IV+
Sbjct: 137 KLSGGEKQRVAIARAILKN--PPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIA 193
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
H T++ AD I+ + G+IV G+ +++A
Sbjct: 194 HRLSTIVNADKII------VLKDGRIVERGTHEELLA 224
Score = 35.9 bits (83), Expect = 0.055
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 623 QYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
Y+P R + LK+V+ +IP G AI G SG GKST L
Sbjct: 9 AYDPGRPV---------LKDVSFTIPAGKKVAIVGPSGSGKSTIL 44
Score = 30.9 bits (70), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
L+++S +P K + + G SGSGKS++
Sbjct: 17 LKDVSFTIPAGKKVAIVGPSGSGKSTIL 44
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 50.9 bits (122), Expect = 2e-06
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 822 IHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLH 880
IH+ + +L + GY +G+ + LSGG+ QR+ +A+ L + + +LDE T+ L
Sbjct: 118 IHDFIMSLPD---GYDTLVGERGSQLSGGQKQRIAIARALLRNP---KILLLDEATSALD 171
Query: 881 YHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
+ L + +G + IVI H L I+ AD I G+++ G + +
Sbjct: 172 AESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVL------QNGQVVEQGTHDEL 224
Query: 941 AKEPLSY 947
+ Y
Sbjct: 225 MAQKGVY 231
Score = 37.8 bits (88), Expect = 0.016
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 503 MLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVE 562
LS G+ QRI +A + + +LDE + L + L G T IV+
Sbjct: 139 QLSGGQKQRIAIARAL--LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIA 195
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
H T+ AD I A + G++V +G+ +++A
Sbjct: 196 HRLSTIRNADLI------AVLQNGQVVEQGTHDELMA 226
Score = 31.3 bits (71), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK ++ +IP G A+ G SG GKST +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVV 46
Score = 29.3 bits (66), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
L+ +S+ +P K + + G SG GKS++
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVV 46
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 50.0 bits (119), Expect = 3e-06
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 810 DESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNT 868
+E + A IH+++ E GY ++G+ LSGGE QRV +A+ + K +
Sbjct: 641 NEEVYAAAKAAQIHDRILQFPE---GYNTRVGERGLKLSGGEKQRVAIARTILKAP---S 694
Query: 869 LYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918
+ +LDE T+ L + + L L + IV+ H L I AD IL
Sbjct: 695 IILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLSTIVNADLIL 743
Score = 33.5 bits (76), Expect = 0.29
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS GE QR+ +A I A + +L LDE + L + L L T IVV H
Sbjct: 675 LSGGEKQRVAIARTILKAPSIIL--LDEATSALDTNTERAIQAALARLC-ANRTTIVVAH 731
Query: 564 DEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
T++ AD I+ I+ G+IV G +++
Sbjct: 732 RLSTIVNADLIL------VISNGRIVERGRHEELLK 761
Score = 31.5 bits (71), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L +IS + K + + G SG+GKS++
Sbjct: 554 LSDISFTVQPGKTVALVGPSGAGKSTI 580
Score = 30.8 bits (69), Expect = 2.2
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 624 YNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
Y+P + + L +++ ++ G A+ G SG GKST +
Sbjct: 547 YDPGKPV---------LSDISFTVQPGKTVALVGPSGAGKSTIM 581
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 49.8 bits (119), Expect = 4e-06
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 806 SMTVDESLDFFAAIPTIHNK------LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKE 859
+ TV E LD+ A + I +K L+ V LG + +LSGG +RV +A+
Sbjct: 86 NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRVGIAQA 144
Query: 860 LSKQATGN-TLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
L G+ ++ I+DEPT GL D + + + L + G IVI
Sbjct: 145 L----VGDPSILIVDEPTAGL---DPEERIRFRNLLSELGEDRIVI 183
Score = 35.1 bits (81), Expect = 0.092
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 476 ILKEI-QKRIHFLVEIGLDYLTL----SRNSNMLSNGESQRIRLASQIGSALTG--VLYI 528
LK I K + V+ L+ + L + LS G +R+ +A AL G + I
Sbjct: 98 WLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ----ALVGDPSILI 153
Query: 529 LDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKI 588
+DEP+ GL + + N L L VI+ H E + + + V + +N GK+
Sbjct: 154 VDEPTAGLDPEERIRFRNLLSEL-GEDRIVILSTHIVEDVESLCNQVAV-----LNKGKL 207
Query: 589 VAEG 592
V EG
Sbjct: 208 VFEG 211
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 49.5 bits (118), Expect = 4e-06
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 829 LKEVGLGYIKI-GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
+ E+ GY I G+ LSGG+ QR+ +A+ L + I DE T+ L Y +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL---IHNPRILIFDEATSALDYESEHAI 177
Query: 888 LNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918
+ +H + G ++I+I H L +K AD I+
Sbjct: 178 MRNMHDICA-GRTVIIIAHRLSTVKNADRII 207
Score = 29.9 bits (67), Expect = 3.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
L NIS+ + +++ + G SGSGKS+L
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLT 45
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 49.1 bits (117), Expect = 5e-06
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L +VG+ K LSGG+ QRV +A+ L+ + + + DEPT+ L + ++L
Sbjct: 137 LAKVGI-AEKADAYPAHLSGGQQQRVAIARALAMEPE---VMLFDEPTSALDPELVGEVL 192
Query: 889 NILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYT 948
++ L + G +++V+ H + + + F + G+I GPPE + P S
Sbjct: 193 KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ-----GKIEEEGPPEQVFGNPQSPR 247
Query: 949 GK-FLKSI 955
K FL S+
Sbjct: 248 LKQFLSSL 255
Score = 40.7 bits (95), Expect = 0.002
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 480 IQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQR 539
I++ +L ++G+ + ++ LS G+ QR+ +A + A+ + + DEP+ L
Sbjct: 130 IERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARAL--AMEPEVMLFDEPTSALDPE 186
Query: 540 DNTKLINTLKHLRDTGNTVIVVEHDEETMLAAD---HIVDIGPEAGINGGKIVAEGSPSQ 596
+++ ++ L + G T++VV H E A D H++ ++ GKI EG P Q
Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTH--EMGFARDVSSHVI------FLHQGKIEEEGPPEQ 238
Query: 597 IIAHPTS 603
+ +P S
Sbjct: 239 VFGNPQS 245
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 49.1 bits (117), Expect = 6e-06
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 833 GLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILH 892
GLG+ + ++LSGG +RV LA+ L ++ L +LDEPT L I L +
Sbjct: 141 GLGFPDEDRPVSSLSGGWRRRVALARALLEEP---DLLLLDEPTNHLDLESIEWLEDY-- 195
Query: 893 TLVDRGNSIIVIEHNLEVI-KTADWILD 919
L ++IV+ H+ + A IL+
Sbjct: 196 -LKRYPGTVIVVSHDRYFLDNVATHILE 222
Score = 48.3 bits (115), Expect = 1e-05
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 783 QGQRYNPETLQIRFKDKSIADVLSMT--VDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840
G ET++I + D+ ++ ++E + F + L G
Sbjct: 376 SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-AYLGRFGFTGEDQE 434
Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
+ LSGGE R+ LAK L + L +LDEPT L DI L + L+D +
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHL---DIESLEALEEALLDFEGT 488
Query: 901 IIVIEHNLEVI-KTADWILDFGPEGGDGGGEI 931
++++ H+ + + A I + + G
Sbjct: 489 VLLVSHDRYFLDRVATRIWLVEDKVEEFEGGY 520
Score = 37.2 bits (86), Expect = 0.022
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKH 550
GL + R + LS G +R+ LA + L +LDEP+ L L + LK
Sbjct: 141 GLGFPDEDRPVSSLSGGWRRRVALARALLEEPD--LLLLDEPTNHLDLESIEWLEDYLKR 198
Query: 551 LRDTGNTVIVVEHDEETMLA-ADHIVDI 577
TVIVV HD + A HI+++
Sbjct: 199 YP---GTVIVVSHDRYFLDNVATHILEL 223
Score = 33.7 bits (77), Expect = 0.23
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 472 ISESILKEIQKRIH-FLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILD 530
+SE ++ + +L G + +LS GE R+ LA + L +LD
Sbjct: 407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP--PNLLLLD 464
Query: 531 EPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGG 586
EP+ L D L + L D TV++V HD + A I + + G
Sbjct: 465 EPTNHL---DIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEG 518
Score = 29.5 bits (66), Expect = 4.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL---ISTLYKAAARIIMGSKYNPGIYD 690
LK+++ I G AI G +G GKST L L + + +G G +D
Sbjct: 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Score = 28.7 bits (64), Expect = 7.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M ++N+S+ L+N+S+ L + I + G +G+GKS+L
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTL 45
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 48.7 bits (116), Expect = 7e-06
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ +G ++ + +LS GE +RV +A+ L K L ILDEP GL +LL
Sbjct: 156 LELLGAKHL-ADRPFGSLSQGEQRRVLIARALVKDPE---LLILDEPAQGLDLIAREQLL 211
Query: 889 NILHTLVDR--GNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASG 935
N L L +++ + H+ E+ L GE++A G
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE------GEVVAQG 255
Score = 39.9 bits (93), Expect = 0.003
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG--VLYILDEPSIG 535
E +L+E+ R LS GE +R+ +A AL L ILDEP+ G
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR----ALVKDPELLILDEPAQG 201
Query: 536 LHQRDNTKLINTLKHLRDTGNT---VIVVEHDEETMLAADHIVDIGPEAGINGGKI 588
L +L+N L+ L + + V H EE H + + + GK+
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 48.9 bits (117), Expect = 7e-06
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN--ILHTLVD 896
IG+ LSGG+ QR+ LA+ + A +Y+LD+P + + H + IL L++
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDA---DIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 897 RGNSIIVIEHNLEVIKTADWIL 918
+ I++ H L+++ AD I+
Sbjct: 178 -NKTRILVTHQLQLLPHADQIV 198
Score = 39.3 bits (92), Expect = 0.006
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L++I++E+P+ +L+ + G GSGKSSL
Sbjct: 21 LKDINLEVPKGELVAIVGPVGSGKSSL 47
Score = 33.1 bits (76), Expect = 0.36
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINT--LKHLRDTGNTVIVV 561
LS G+ QRI LA + S +Y+LD+P + + L L + T I+V
Sbjct: 128 LSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILV 184
Query: 562 EHDEETMLAADHIVDI 577
H + + AD IV +
Sbjct: 185 THQLQLLPHADQIVVL 200
Score = 32.7 bits (75), Expect = 0.49
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTL 671
LK++ +P G AI G G GKS+ L + L
Sbjct: 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALL 52
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 48.6 bits (116), Expect = 8e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L VGL + K + LSGGE QRV +A+ + Q + + DEPT L ++
Sbjct: 121 VLDLVGLKH-KARALPSQLSGGEQQRVAIARAIVNQP---AVLLADEPTGNLDPDLSWEI 176
Query: 888 LNILHTLVDRGNSIIVIEHNLEVIKT 913
+ + + G ++++ H+LE++
Sbjct: 177 MRLFEEINRLGTTVLMATHDLELVNR 202
Score = 42.5 bits (100), Expect = 6e-04
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNM----LSNGESQRIRLASQIGSALTGVLYILDEPS 533
+EI++R V LD + L + LS GE QR+ +A I + + + DEP+
Sbjct: 112 REIRRR----VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA--VLLADEPT 165
Query: 534 IGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGS 593
L + +++ + + G TV++ HD E + H V + G++V + S
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA-----LEDGRLVRDES 220
Query: 594 P 594
Sbjct: 221 R 221
Score = 35.9 bits (83), Expect = 0.056
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L++V+ IP G F +TG SG GKST L
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLL 45
Score = 34.8 bits (80), Expect = 0.13
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MSKIKNISIRGAREHN-LQNISIELPRNKLIVMTGVSGSGKSSL 43
M + +N+S L+++S +P+ + + +TG SG+GKS+L
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTL 44
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 48.2 bits (115), Expect = 1e-05
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 40/171 (23%)
Query: 786 RYNPETLQIRFKDKSIADVLSMTVDE--------SLDFFAAIPTIHNKLTTLKEVGLGYI 837
+Y +I FK + D+ + +E + + IP + N L+ V G
Sbjct: 51 KYEVTEGEILFKGE---DITDLPPEERARLGIFLAFQYPPEIPGVKNA-DFLRYVNEG-- 104
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
SGGE +R ++ + L + L ILDEP +GL + + +++ L +
Sbjct: 105 --------FSGGEKKRNEILQLLLLEPD---LAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 898 GNSIIVIEHNLEVIK-----TADWILDFGPEGGDGGGEIIASGPPEAIAKE 943
G S+++I H ++ + D G I+ SG E +A E
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYD---------GRIVKSGDKE-LALE 194
Score = 41.2 bits (97), Expect = 0.001
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 488 VEI-GLDYLTLSRNSNM-LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLI 545
EI G+ R N S GE +R + + L L ILDEP GL D +L+
Sbjct: 87 PEIPGVKNADFLRYVNEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGL-DIDALRLV 143
Query: 546 -NTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAG--INGGKIVAEGSPS 595
+ LR+ G +V+++ H + D+I P+ + G+IV G
Sbjct: 144 AEVINKLREEGKSVLIITHYQRL---LDYIK---PDRVHVLYDGRIVKSGDKE 190
Score = 31.2 bits (71), Expect = 1.3
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
+IK++ + + L+ +++ + + ++ + G +GSGKS+LA
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLA 43
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 48.3 bits (115), Expect = 1e-05
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGL + K LSGGE QRV +A+ + T+ I DEPT L +++
Sbjct: 121 LELVGLSH-KHRALPAELSGGEQQRVAIARAI---VNSPTILIADEPTGNLDPDTTWEIM 176
Query: 889 NILHTLVDRGNSIIVIEHNLEVIKT 913
N+L + G +++V H E++ T
Sbjct: 177 NLLKKINKAGTTVVVATHAKELVDT 201
Score = 45.3 bits (107), Expect = 8e-05
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNM----LSNGESQRIRLASQIGSALTGVLYILDEPS 533
+EI+KR V L+ + LS LS GE QR+ +A I ++ T + I DEP+
Sbjct: 111 REIRKR----VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT--ILIADEPT 164
Query: 534 IGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEE 566
L +++N LK + G TV+V H +E
Sbjct: 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L + SI G F + G SG GKST L
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLL 44
Score = 31.4 bits (71), Expect = 1.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L I+I + + + + G SG+GKS+L
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTL 43
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 48.2 bits (115), Expect = 1e-05
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 807 MTVDESLDFFAAIPTIHNKLT--TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQA 864
+T E+L A + I K L VGL + S G QR+ +A L
Sbjct: 87 LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRLGIALAL---L 142
Query: 865 TGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNL-EVIKTAD 915
L ILDEPT GL I +L ++ +L D+G ++++ H L E+ K AD
Sbjct: 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194
Score = 38.2 bits (89), Expect = 0.012
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 504 LSNGESQRIRLASQIGSALTGV--LYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
S G QR+ I AL G L ILDEP+ GL +L + LRD G TV++
Sbjct: 127 FSLGMKQRL----GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLIS 182
Query: 562 EHD-EETMLAADHIVDIGPEAGINGGKIVAEG 592
H E AD I IN GK++ EG
Sbjct: 183 SHLLSEIQKVADRIGI------INKGKLIEEG 208
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 48.0 bits (114), Expect = 1e-05
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 807 MTVDESLDFFAAIPTIHNKLTT------LKEVGLGYIKIGQSANTLSGGESQRVKLAKEL 860
+T E+L +FA + + K K + L + + S G Q+V +A+ L
Sbjct: 90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-LDRRVGEFSTGMKQKVAIARAL 148
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNL-EVIKTADWILD 919
+ + +LDEPT+GL K + + L + G ++I H + EV D ++
Sbjct: 149 VHDPS---ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 920 FGPEGGDGGGEIIASGPPEAIAK 942
GE++ G EA+
Sbjct: 206 L------HKGEVVLEGSIEALDA 222
Score = 46.4 bits (110), Expect = 4e-05
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
KEI+ RI L + + L L R S G Q++ +A + + +LDEP+ GL
Sbjct: 108 KEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARAL--VHDPSILVLDEPTSGL 164
Query: 537 HQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPS 595
R K + +K L++ G VI H +E D ++ ++ G++V EGS
Sbjct: 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIV------LHKGEVVLEGSIE 218
Query: 596 QIIA 599
+ A
Sbjct: 219 ALDA 222
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 47.9 bits (114), Expect = 1e-05
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 826 LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIA 885
L L+ VG+ K Q A+TLSGG+ QRV +A+ L +Q + + DEP L D
Sbjct: 129 LDALERVGILD-KAYQRASTLSGGQQQRVAIARALVQQP---KIILADEPVASL---DPE 181
Query: 886 KLLNILHTLVD----RGNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAI 940
++ L D G ++IV H +++ K AD I+ G G I+ GP +
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII------GLKAGRIVFDGPASEL 235
Query: 941 AKE 943
E
Sbjct: 236 TDE 238
Score = 39.0 bits (91), Expect = 0.006
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLH 537
++ + + L +G+ R S LS G+ QR+ +A + +L DEP L
Sbjct: 123 EDKAQALDALERVGILDKAYQRAST-LSGGQQQRVAIARALVQQPKIIL--ADEPVASLD 179
Query: 538 QRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPS 595
K+++ LK + ++ G TVIV H + AD I+ G+ G+IV +G S
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII------GLKAGRIVFDGPAS 233
Query: 596 QI 597
++
Sbjct: 234 EL 235
Score = 34.8 bits (80), Expect = 0.12
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MSKIKNISIRGAREHN-LQNISIELPRNKLIVMTGVSGSGKSSL 43
M ++KN+S H L+++++E+ + +++ + G SG+GKS+L
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTL 46
Score = 34.0 bits (78), Expect = 0.19
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V I G AI G SG GKST L
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLL 47
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 47.7 bits (113), Expect = 2e-05
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 806 SMTVDESLDFFAAI--PTIHNKL-------TTLKEVGLGYI---KIGQ-SANTLSGGESQ 852
++TV E+L F A + P+ +K + E+GL IG LSGGE +
Sbjct: 118 TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK 177
Query: 853 RVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHN--LEV 910
RV +A EL T ++ LDEPT+GL +++ +L L G ++I H E+
Sbjct: 178 RVSIALEL---LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSEL 234
Query: 911 IKTADWILDFGPEGGDGGGEIIASGPPEAI 940
+ D +L GE++ SG P +
Sbjct: 235 FELFDKLLLL------SEGEVVYSGSPREL 258
Score = 40.4 bits (94), Expect = 0.002
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 473 SESILKEIQKRIHFLV-EIGLDYLTLSRNSNM----LSNGESQRIRLASQIGSALTGVLY 527
S +E ++R+ ++ E+GL+ + N LS GE +R+ +A ++ + + +
Sbjct: 135 SSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPS--IL 192
Query: 528 ILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LDEP+ GL +++ LK L +G TVI H
Sbjct: 193 FLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIH 228
Score = 37.7 bits (87), Expect = 0.015
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK V+G+ G AI G SG GK+T L
Sbjct: 46 LKGVSGTAKPGELLAIMGPSGSGKTTLL 73
Score = 29.2 bits (65), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+ +S +L+ + G SGSGK++L
Sbjct: 46 LKGVSGTAKPGELLAIMGPSGSGKTTL 72
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 47.0 bits (111), Expect = 2e-05
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 807 MTVDESLDFFAAIPTIHNK------LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKEL 860
+T E L+F+A + + L+ VGLG Q T SGG +R+ A L
Sbjct: 655 LTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-VRTYSGGNKRRLSFAIAL 713
Query: 861 SKQATGNT-LYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLE 909
G+ + +LDEP+TGL L +I+ L G +II+ H++E
Sbjct: 714 ----IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME 759
Score = 29.6 bits (66), Expect = 4.4
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 13/168 (7%)
Query: 455 QIWFEQLPTQITQKANKISESILKEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRL 514
+W E + + ++ +I I L+ + ++ S G +R+
Sbjct: 650 ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSF 709
Query: 515 ASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHI 574
A I + +LDEPS GL + L + + LR G +I+ H +M A+ +
Sbjct: 710 A--IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH---SMEEAEAL 764
Query: 575 VDIGPEAGING-GKIVAEGSPSQIIAHPTSLTGKYMSGKMSIKIPEKR 621
I G++ GSP ++ S G + + IK +
Sbjct: 765 CT---RTAIMVIGQLRCIGSPQEL----KSRYGSGYTLTVRIKELPEV 805
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 47.1 bits (112), Expect = 2e-05
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGGE +RV +A EL + +L LDEPT+GL +++++L L D G +II
Sbjct: 112 LSGGERKRVSIALEL---VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168
Query: 906 HNL--EVIKTADWIL 918
H E+ + D +L
Sbjct: 169 HQPSSEIFELFDKLL 183
Score = 39.4 bits (92), Expect = 0.005
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIY 689
LKNV+G G TAI G SG GKST L + G + G+
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLL---------NALAGRRTGLGVS 65
Score = 39.0 bits (91), Expect = 0.006
Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 27/187 (14%)
Query: 385 SNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSPCTICHGYRLKDESLAVKIAGKHIG 444
LSFR + T++ S++ LL+ + + I +L +AG+ G
Sbjct: 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 445 EIADMSIKKAQIWFEQLPTQITQKANKISESILKEIQKRIHFLVE--IGLDYLTLSRNSN 502
++ P + +K I ++ + I LT+
Sbjct: 62 LG-----VSGEVLINGRP------------LDKRSFRKIIGYVPQDDILHPTLTVRETLM 104
Query: 503 M------LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGN 556
LS GE +R+ +A ++ S + L LDEP+ GL ++++ L+ L DTG
Sbjct: 105 FAAKLRGLSGGERKRVSIALELVSNPS--LLFLDEPTSGLDSSSALQVMSLLRRLADTGR 162
Query: 557 TVIVVEH 563
T+I H
Sbjct: 163 TIICSIH 169
Score = 29.4 bits (66), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+N+S + +L + G SG+GKS+L
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTL 51
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 46.9 bits (111), Expect = 2e-05
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGN-TVIVVE 562
LS GE QR+ +A+ + Y+ DEPS L ++ L + G T +VVE
Sbjct: 72 LSGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEGSPS 595
HD + D++ D V EG P
Sbjct: 130 HD---LAVLDYLSDR---------IHVFEGEPG 150
Score = 46.5 bits (110), Expect = 3e-05
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN----ILHTLVDRGNSI 901
LSGGE QRV +A L + A T Y+ DEP+ Y DI + LN I + +
Sbjct: 72 LSGGELQRVAIAAALLRNA---TFYLFDEPSA---YLDIEQRLNAARAIRRLSEEGKKTA 125
Query: 902 IVIEHNLEVIK-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKN 958
+V+EH+L V+ +D I F E G G IAS P K +FL+ L
Sbjct: 126 LVVEHDLAVLDYLSDRIHVFEGEPGVYG---IASQP-----KGTREGINRFLRGYLIT 175
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 46.7 bits (111), Expect = 3e-05
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 826 LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIA 885
L L+ VGL K Q A+ LSGG+ QRV +A+ L +Q L + DEP L D A
Sbjct: 126 LAALERVGLLD-KAYQRADQLSGGQQQRVAIARALMQQP---KLILADEPVASL---DPA 178
Query: 886 KLLNILHTLVD----RGNSIIVIEHNLEVIKT-ADWILDFGPEGGDGGGEIIASGPPEAI 940
++ L G ++IV H +++ + AD I+ G G I+ GPP +
Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV------GLKDGRIVFDGPPAEL 232
Query: 941 AKEPL 945
E L
Sbjct: 233 TDEVL 237
Score = 46.3 bits (110), Expect = 4e-05
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 479 EIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQ 538
E Q+ + L +GL R LS G+ QR+ +A + L + DEP L
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQ-LSGGQQQRVAIARAL--MQQPKLILADEPVASLDP 177
Query: 539 RDNTKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSPSQ 596
+ ++++ LK + R+ G TVIV H + AD IV G+ G+IV +G P++
Sbjct: 178 ASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV------GLKDGRIVFDGPPAE 231
Query: 597 I 597
+
Sbjct: 232 L 232
Score = 35.9 bits (83), Expect = 0.047
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V+ SI G F A+ G SG GKST L
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLL 44
Score = 35.5 bits (82), Expect = 0.069
Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 KIKNISIR-GAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S + L+++S+ + + + + G SG+GKS+L
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTL 43
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 46.8 bits (111), Expect = 3e-05
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 784 GQRYNPETLQIRFKDKSIADVL--SMTVDESLDFFA----------AIPTIHNKLTTLKE 831
GQ P+ Q D+L +TV E+L + A AI + L++
Sbjct: 71 GQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD 130
Query: 832 VGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNIL 891
+ L I G +SGGE +RV +A +L + ILDEPT+GL D LN++
Sbjct: 131 LALTRIG-GNLVKGISGGERRRVSIAVQL---LWDPKVLILDEPTSGL---DSFTALNLV 183
Query: 892 HTLVD--RGNSIIVI 904
TL R N I+++
Sbjct: 184 STLSQLARRNRIVIL 198
Score = 38.3 bits (89), Expect = 0.010
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 495 LTLSRNSNM--LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLR 552
LT + + +S GE +R+ +A Q+ VL ILDEP+ GL L++TL L
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQL-LWDPKVL-ILDEPTSGLDSFTALNLVSTLSQLA 190
Query: 553 DTGNTVIVVEH 563
VI+ H
Sbjct: 191 RRNRIVILTIH 201
Score = 31.0 bits (70), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L +V+ + G AI G SG GK+T L
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLL 50
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 46.4 bits (110), Expect = 4e-05
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
+ + TLSGGE QRV + + L T L ++DEP L ++L L L D
Sbjct: 122 LDRYPGTLSGGEKQRVAIGRALL---TAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 899 N-SIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
N I+ + H+L EV++ AD ++ G++ ASGP E + P
Sbjct: 179 NIPILYVSHSLDEVLRLADRVVVL------ENGKVKASGPLEEVWGSPD 221
Score = 41.8 bits (98), Expect = 8e-04
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 490 IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGV--LYILDEPSIGLHQRDNTKLINT 547
+G+++L L R LS GE QR+ IG AL L ++DEP L +++
Sbjct: 116 LGIEHL-LDRYPGTLSGGEKQRV----AIGRALLTAPELLLMDEPLASLDLPRKREILPY 170
Query: 548 LKHLRDTGNTVIV-VEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
L+ LRD N I+ V H +E + AD +V + GK+ A G ++ P
Sbjct: 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLE------NGKVKASGPLEEVWGSP 220
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 46.2 bits (109), Expect = 4e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN--ILHTLV 895
+IG+ LSGG+ QR+ +A+ L + + LD+P + L H L+ IL L
Sbjct: 133 EIGERGINLSGGQRQRICVARALYQNTN---IVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 896 DRGNSIIVIEHNLEVIKTADWIL 918
D +++++ H L+ + ADWI+
Sbjct: 190 DDKRTLVLVTHKLQYLPHADWII 212
Score = 35.1 bits (80), Expect = 0.11
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEP--SIGLHQRDNTKLINTLKHLRDTGNTVIVV 561
LS G+ QRI +A + T +++ LD+P ++ +H D+ LK L+D T+++V
Sbjct: 141 LSGGQRQRICVARALYQN-TNIVF-LDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 562 EHDEETMLAADHIV 575
H + + AD I+
Sbjct: 199 THKLQYLPHADWII 212
Score = 30.8 bits (69), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLAFDTI 48
L NI+I +P +L ++ G G GKSSL +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL 48
Score = 30.4 bits (68), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTL 671
L N+ IP G T I G G GKS+ L++ L
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL 48
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 46.0 bits (109), Expect = 5e-05
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 485 HFLVEIGLDYLTLS----RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
++ ++YL L R + LS G+ QR +A + VL LDEP L +
Sbjct: 113 RRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL--LDEPLNNLDMKH 170
Query: 541 NTKLINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
+ +++ L+ L + G T++VV HD +DHIV + GK+V +GSP +II
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV------ALKNGKVVKQGSPDEII 224
Score = 37.9 bits (88), Expect = 0.013
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 30/135 (22%)
Query: 809 VDESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNT 868
++E++++ L L + L + LSGG+ QR +A L++ +T
Sbjct: 116 INEAIEYL--------HLEDLSDRYL---------DELSGGQRQRAFIAMVLAQ----DT 154
Query: 869 LYI-LDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVIEHNLEVIKT-ADWILDFGPEGG 925
Y+ LDEP L +++ IL L D G +I+V+ H++ +D I+
Sbjct: 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL----- 209
Query: 926 DGGGEIIASGPPEAI 940
G+++ G P+ I
Sbjct: 210 -KNGKVVKQGSPDEI 223
Score = 32.5 bits (74), Expect = 0.51
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M I+N+S + L ++S+++P+ + + G +G+GKS+L
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTL 43
Score = 29.4 bits (66), Expect = 5.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 615 IKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
I I + Y ++ ++ IP G T+I G +G GKST L
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLD----------IPKGGITSIIGPNGAGKSTLL 44
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 46.1 bits (109), Expect = 5e-05
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 829 LKEVGL-GYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L+ VGL GY + N LSGG QRV LA+ L A + ++DE + L ++
Sbjct: 149 LELVGLEGYAD--KYPNELSGGMQQRVGLARAL---ANDPDILLMDEAFSALDPLIRTEM 203
Query: 888 LNILHTLVDR-GNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
+ L L + +I+ I H+L E ++ D I GEI+ G PE I P
Sbjct: 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM------KDGEIVQVGTPEEILLNPA 257
Query: 946 -SYTGKFLKSI 955
Y F++++
Sbjct: 258 NDYVRDFVRNV 268
Score = 45.0 bits (106), Expect = 1e-04
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDT-GNTVIV 560
N LS G QR+ LA + A + ++DE L T++ + L L+ T++
Sbjct: 163 NELSGGMQQRVGLARAL--ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF 220
Query: 561 VEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
+ HD +E + D I A + G+IV G+P +I+ +P
Sbjct: 221 ITHDLDEALRIGDRI------AIMKDGEIVQVGTPEEILLNP 256
Score = 33.8 bits (77), Expect = 0.24
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
+ + S+++ ++ V+ G+SGSGKS+L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTL 70
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 46.1 bits (109), Expect = 5e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
T SGGE QRV +A+ + +LDEPT L + A ++ ++ RG +++ I
Sbjct: 152 TFSGGEQQRVNIARGF---IVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGI 208
Query: 905 EHNLEVIKT-ADWILDFGPEG 924
H+ EV + AD +LD
Sbjct: 209 FHDEEVREAVADRLLDVSAFS 229
Score = 37.2 bits (86), Expect = 0.021
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 505 SNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHD 564
S GE QR+ +A G + + +LDEP+ L + ++ ++ + G ++ + HD
Sbjct: 154 SGGEQQRVNIAR--GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211
Query: 565 EETMLA-ADHIVDIGPEA 581
EE A AD ++D+ +
Sbjct: 212 EEVREAVADRLLDVSAFS 229
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 45.9 bits (109), Expect = 5e-05
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 468 KANKISESILKEIQKRIHFLVEIGLDYLTLSRNSNM-LSNGESQRIRLASQIGSALTGVL 526
A I +KE++++ L GLD L R N S GE +R + + L L
Sbjct: 111 GARGILPEFIKELKEKAELL---GLDEEFLERYVNEGFSGGEKKRNEILQLL--LLEPKL 165
Query: 527 YILDEPSIGLHQRDNTKLI-NTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAG--I 583
ILDEP GL D K++ + LR+ G V+++ H + D+I P+ +
Sbjct: 166 AILDEPDSGL-DIDALKIVAEGINALREEGRGVLIITHYQRL---LDYIK---PDKVHVL 218
Query: 584 NGGKIVAEGSPS 595
G+IV G P
Sbjct: 219 YDGRIVKSGDPE 230
Score = 39.4 bits (92), Expect = 0.004
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 20/151 (13%)
Query: 800 SIADVLSMTVDESLDFFAAIPTIHNKLTT-LKEVGLGYIKIGQSAN-TLSGGESQRVKLA 857
+ +D L ++ +P +L + +GL + + N SGGE +R ++
Sbjct: 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI- 155
Query: 858 KELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIK--TAD 915
L L ILDEP +GL + + ++ L + G +++I H ++ D
Sbjct: 156 --LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213
Query: 916 W---ILDFGPEGGDGGGEIIASGPPEAIAKE 943
+ D G I+ SG PE +A+E
Sbjct: 214 KVHVLYD---------GRIVKSGDPE-LAEE 234
Score = 28.6 bits (64), Expect = 9.0
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 1 MSKIKNI--SIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
M +IK++ + G +E L+ +++ + ++ + G +GSGKS+LA
Sbjct: 3 MLEIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLA 47
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 45.8 bits (109), Expect = 5e-05
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGGE R+ LAK L + L +LDEPT L I L L + ++I++
Sbjct: 71 LSGGEKMRLALAKLLLENP---NLLLLDEPTNHLDLESIEALEE---ALKEYPGTVILVS 124
Query: 906 HNLEVI-KTADWILDFGPEG 924
H+ + + A I++
Sbjct: 125 HDRYFLDQVATKIIELEDGK 144
Score = 35.8 bits (83), Expect = 0.058
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS GE R+ LA + L +LDEP+ L L LK TVI+V H
Sbjct: 71 LSGGEKMRLALAKLLLENPN--LLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125
Query: 564 DEETM-LAADHIVDIGP 579
D + A I+++
Sbjct: 126 DRYFLDQVATKIIELED 142
Score = 29.7 bits (67), Expect = 3.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N+S + L++IS+ + I + G +G+GKS+L
Sbjct: 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTL 42
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 45.3 bits (107), Expect = 7e-05
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
+G+ + LSGG+ QR+ +A+ L + + ILDE T+ L + L L+
Sbjct: 597 VVGEKGSQLSGGQKQRIAIARALLRNP---RVLILDEATSALDAESEYLVQEALDRLMQ- 652
Query: 898 GNSIIVIEHNLEVIKTADWIL 918
G +++VI H L ++ AD I+
Sbjct: 653 GRTVLVIAHRLSTVRHADQIV 673
Score = 41.1 bits (96), Expect = 0.001
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 504 LSNGESQRIRLASQIGSALT---GVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIV 560
LS G+ QRI +A AL VL ILDE + L + L L G TV+V
Sbjct: 605 LSGGQKQRIAIAR----ALLRNPRVL-ILDEATSALDAESEYLVQEALDRLMQ-GRTVLV 658
Query: 561 VEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKYMSGKMSIKIPEK 620
+ H T+ AD IV I+ G++V G+ ++++ P L K + ++ P
Sbjct: 659 IAHRLSTVRHADQIV------VIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGEPGA 712
Query: 621 RR 622
Sbjct: 713 VF 714
Score = 36.1 bits (83), Expect = 0.045
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 29/123 (23%)
Query: 594 PSQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFT 653
P P L G +S P P+ + LKN++ +I G
Sbjct: 452 PLTGTLAPDHLQGVIEFEDVSFAYPT-----RPDVPV---------LKNLSFTIRPGEVV 497
Query: 654 AITGISGGGKSTF--LISTLYK-AAARIIMG----SKYNPGIYDRIDGLEYIDKVVSINQ 706
A+ G SG GKST L+ Y + RI++ S N R K+ + Q
Sbjct: 498 ALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR--------KIGLVGQ 549
Query: 707 SPI 709
P+
Sbjct: 550 EPV 552
Score = 32.6 bits (74), Expect = 0.57
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
L+N+S + +++ + G SGSGKS++A
Sbjct: 484 LKNLSFTIRPGEVVALVGPSGSGKSTIA 511
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 45.5 bits (108), Expect = 7e-05
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 478 KEIQKRIHFLVEI-GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI +R+ + E+ +++L L R LS G+ QR+ L I ++++DEP L
Sbjct: 105 DEIDERVREVAELLQIEHL-LDRKPKQLSGGQRQRVALGRAI--VREPKVFLMDEPLSNL 161
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHDE-ETMLAADHIV 575
+ ++ LK L + G T I V HD+ E M AD I
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202
Score = 31.3 bits (71), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGL 879
LSGG+ QRV L + + ++ ++++DEP + L
Sbjct: 130 QLSGGQRQRVALGRAIVREP---KVFLMDEPLSNL 161
Score = 30.9 bits (70), Expect = 1.6
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N++ R L ++++++ + +V+ G SG GK++
Sbjct: 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTT 42
Score = 29.4 bits (66), Expect = 5.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL--ISTLYKA-AARIIMGSK 683
L ++ I G F + G SG GK+T L I+ L + + RI +G +
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 45.2 bits (107), Expect = 9e-05
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 828 TLKEVGLG---YIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDI 884
L+ VGL + + LSGG QRV LA+ L A + ++DE + L
Sbjct: 144 ALELVGLEGWEHKYPDE----LSGGMQQRVGLARAL---AVDPDILLMDEAFSALDPLIR 196
Query: 885 AKLLNILHTLV-DRGNSIIVIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAK 942
++ + L L + +I+ I H+L E ++ D I G ++ G PE I
Sbjct: 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM------KDGRLVQVGTPEEILT 250
Query: 943 EPLS-YTGKFLKSILKNK 959
P + Y +F + + + K
Sbjct: 251 NPANDYVREFFRGVDRAK 268
Score = 37.9 bits (88), Expect = 0.014
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVE 562
LS G QR+ LA + A+ + ++DE L ++ + L L + T++ +
Sbjct: 161 LSGGMQQRVGLARAL--AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218
Query: 563 HD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
HD +E + D I A + G++V G+P +I+ +P
Sbjct: 219 HDLDEALRLGDRI------AIMKDGRLVQVGTPEEILTNP 252
Score = 32.1 bits (73), Expect = 0.71
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
+ ++S+++ ++ V+ G+SGSGKS+L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTL 66
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 45.3 bits (107), Expect = 9e-05
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 794 IRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTT--LKEVGLGYIKIGQSANTLSGGES 851
+ +K + I TV + L H T K + + I + + LSGGE
Sbjct: 63 VSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPELSGGEL 121
Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS-IIVIEHNLEV 910
QRV +A LSK A +Y+LDEP+ L ++ + V+EH++ +
Sbjct: 122 QRVAIAACLSKDA---DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178
Query: 911 IK-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSI 955
I AD ++ F E G + PP+++ S +FLK++
Sbjct: 179 IDYLADRLIVFEGEPSVNG----VANPPQSL----RSGMNRFLKNL 216
Score = 43.4 bits (102), Expect = 3e-04
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 462 PTQITQKANKISESILKEIQKRI----HFLVEI----GLDYLTLSRNSNMLSNGESQRIR 513
P I +L I K +F EI ++ + L R LS GE QR+
Sbjct: 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPELSGGELQRVA 125
Query: 514 LASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGN-TVIVVEHD--EETMLA 570
+A+ + +Y+LDEPS L ++ + T VVEHD L
Sbjct: 126 IAACLSK--DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL- 182
Query: 571 ADHIVDIGPEAGING 585
AD ++ E +NG
Sbjct: 183 ADRLIVFEGEPSVNG 197
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 45.2 bits (107), Expect = 9e-05
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
SGGE QR+ LA+ L + A + +LDEPT GL +LL+++ V + ++I I
Sbjct: 99 FSGGERQRLALARILLQDA---PIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWIT 154
Query: 906 HNLEVIKTADWIL 918
H+L I+ D IL
Sbjct: 155 HHLTGIEHMDKIL 167
Score = 39.4 bits (92), Expect = 0.005
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTL-KHLRDTGNTVIVVE 562
S GE QR+ LA + + +LDEP++GL +L++ + + L+D T+I +
Sbjct: 99 FSGGERQRLALARILLQDAP--IVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIWIT 154
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEG 592
H + D I+ + GKI+ +G
Sbjct: 155 HHLTGIEHMDKIL------FLENGKIIMQG 178
Score = 32.1 bits (73), Expect = 0.82
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 4 IKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
I N+S + L+N+S+EL + + I + G SGSGKS+L
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL 45
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 45.2 bits (107), Expect = 1e-04
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVI 904
LSGG+ QRV LA+ L+ + +LDEPT+ L ++ +L +L + G +++++
Sbjct: 101 LSGGQQQRVALARALAMDP---DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV 157
Query: 905 EHNL-EVIKTADWIL 918
H+L E + AD ++
Sbjct: 158 THDLDEAARLADRVV 172
Score = 42.1 bits (99), Expect = 7e-04
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 474 ESILKEIQKRIHFLVEIGLDYLTLSRNSNM---LSNGESQRIRLASQIGSALTGVLYILD 530
E L +++RI + + + L+ N+ LS G+ QR+ LA + A+ + +LD
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARAL--AMDPDVLLLD 125
Query: 531 EPSIGLHQRDNTKLINTLKHLRDT-GNTVIVVEHD-EETMLAADHIV 575
EP+ L ++ LK L+ G TV++V HD +E AD +V
Sbjct: 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172
Score = 34.4 bits (79), Expect = 0.14
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
L +V+ +I G A+ G SG GKST L R I G
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLL---------RCIAG 48
Score = 33.2 bits (76), Expect = 0.31
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++KN+S R ++ L ++S+ + +++ + G SGSGKS+L
Sbjct: 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTL 42
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 804 VLSMTVDESLDFFAAIPTIHNKLTTLKEVGL---------GY-IKIGQSANTLSGGESQR 853
+ S T+ E++ T + KE G GY +G++ LS GE Q
Sbjct: 88 LFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147
Query: 854 VKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKT 913
+ +A+ + + + ILDE T+ + + L L+ G + I+I H L IK
Sbjct: 148 LAIARAMLRDP---KILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN 203
Query: 914 ADWILDFGPEGGDGGGEIIASGPPE 938
AD IL G+II G +
Sbjct: 204 ADKILVL------DDGKIIEEGTHD 222
Score = 40.2 bits (94), Expect = 0.003
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 470 NKISESILKEIQKRIHFLVEI-----GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG 524
++ + E K I G D L N LS GE Q + +A +
Sbjct: 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDT-VLGENGGNLSQGERQLLAIARAM--LRDP 158
Query: 525 VLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGIN 584
+ ILDE + + + L+ L G T I++ H T+ AD I+ ++
Sbjct: 159 KILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKNADKIL------VLD 211
Query: 585 GGKIVAEGSPSQIIA 599
GKI+ EG+ +++A
Sbjct: 212 DGKIIEEGTHDELLA 226
Score = 31.7 bits (72), Expect = 0.90
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYK 673
LK++ SI G AI G +G GK+T L+ Y
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 45.1 bits (107), Expect = 1e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L++VGL K LSGG+ QRV +A+ L A + + DEPT+ L + ++L
Sbjct: 120 LEKVGLAD-KADAYPAQLSGGQQQRVAIARAL---AMNPKVMLFDEPTSALDPELVGEVL 175
Query: 889 NILHTLVDRGNSIIVIEH 906
+++ L + G +++V+ H
Sbjct: 176 DVMKDLAEEGMTMVVVTH 193
Score = 37.0 bits (86), Expect = 0.024
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+IKN+ H L+ I + + + +++V+ G SGSGKS+L
Sbjct: 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTL 42
Score = 29.3 bits (66), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK + ++ G I G SG GKST L
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLL 43
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 44.9 bits (106), Expect = 1e-04
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 808 TVDESLDFFAAI-----PTIHNKLTTLKEV----GLGYIK---IGQSANTLSGGESQRVK 855
TV ESL F AA+ + K ++EV L +G + LS + +R+
Sbjct: 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT 939
Query: 856 LAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEH--NLEVIKT 913
+ EL A +++ LDEPT+GL A ++ L L D G +I+ H ++++ +
Sbjct: 940 IGVELV--ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA 997
Query: 914 ADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSY 947
D +L GG+ + GP + + + Y
Sbjct: 998 FDELLLL-----KRGGQTVYFGPLGENSSKLIEY 1026
Score = 37.2 bits (86), Expect = 0.021
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMG 681
L NV+G+ G+ TA+ G SG GK+T L+ L A R G
Sbjct: 807 LNNVSGAFKPGVLTALMGESGAGKTT-LLDVL---AGRKTGG 844
Score = 36.4 bits (84), Expect = 0.043
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 807 MTVDESLDFFAAIPTIHNKLT--------------TLKEVGLGY---IKIGQ-SANTLSG 848
+TV E+LDF A ++ LK +GL + +G +SG
Sbjct: 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSG 263
Query: 849 GESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
GE +RV + + L ++ DE T GL +++ L L + ++
Sbjct: 264 GERKRVSIGEML---VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALV 316
Score = 31.8 bits (72), Expect = 1.0
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 628 RMIHVIN-ARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNP 686
RM+ + LK+++G I G T + G G GK+T L KA A + +
Sbjct: 118 RMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL-----KALAGKLDNFLKSS 172
Query: 687 GI--YDRIDGLEYIDK--VVSINQSPIGHTPR 714
G Y+ D E++ K V ++ + H P
Sbjct: 173 GEITYNGHDLKEFVPKKTVAYNSEQDV-HFPE 203
Score = 31.4 bits (71), Expect = 1.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 510 QRIRLASQIGSALT---GVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
QR RL IG L + LDEP+ GL + ++ L+ L DTG T++ H
Sbjct: 934 QRKRLT--IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIH 988
Score = 28.7 bits (64), Expect = 8.8
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQ 66
+ I+G L N+S L + G SG+GK++L D + Y+E
Sbjct: 797 MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTL-LDVLAGRKTGGYIE-----GDI 850
Query: 67 FLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRL 113
+ K + + ++ H+P TV LRL
Sbjct: 851 LISGFPKDQ----ETFARVSGYVEQQDIHSPELTVRESLRFSAALRL 893
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 44.8 bits (106), Expect = 1e-04
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L+ VGL K LSGG+ QRV +A+ L A + + DE T+ L +
Sbjct: 124 LLELVGLED-KADAYPAQLSGGQKQRVGIARAL---ANNPKVLLCDEATSALDPETTQSI 179
Query: 888 LNILHTLVDR-GNSIIVIEHNLEVIK 912
L +L + G +I++I H +EV+K
Sbjct: 180 LALLRDINRELGLTIVLITHEMEVVK 205
Score = 39.8 bits (93), Expect = 0.004
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 478 KEIQKRIHFLVE-IGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI++R+ L+E +GL+ + + LS G+ QR+ +A + A + + DE + L
Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQ-LSGGQKQRVGIARAL--ANNPKVLLCDEATSAL 171
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSP 594
++ L+ + R+ G T++++ H+ E + D + A + G++V EG+
Sbjct: 172 DPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV------AVMEKGEVVEEGTV 225
Query: 595 SQIIAHP 601
++ A+P
Sbjct: 226 EEVFANP 232
Score = 30.9 bits (70), Expect = 1.7
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 1 MSKIKNIS----IRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M ++KN+S G + L+++S+ +P+ ++ + G SG+GKS+L
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTL 47
Score = 30.1 bits (68), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V+ S+P G I G SG GKST +
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLI 48
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 44.9 bits (106), Expect = 1e-04
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VGLG ++ LSGGE QRV LA+ A + DEPT L K+
Sbjct: 131 LEAVGLGK-RLTHYPAQLSGGEQQRVALARAF---AGRPDVLFADEPTGNLDRATGDKIA 186
Query: 889 NILHTLV-DRGNSIIVIEHNLEVIKTADWIL 918
++L L +RG +++++ H+ ++ D L
Sbjct: 187 DLLFALNRERGTTLVLVTHDPQLAARCDRQL 217
Score = 36.0 bits (83), Expect = 0.043
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVE 562
LS GE QR+ LA A + DEP+ L + K+ + L L R+ G T+++V
Sbjct: 147 LSGGEQQRVALARAF--AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204
Query: 563 HDE 565
HD
Sbjct: 205 HDP 207
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 44.6 bits (105), Expect = 1e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L L + ++ LSGGE QR+ L + L + +LDE T+ L + +
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQ---FMPKILLLDEITSALDESNKRNIE 173
Query: 889 NILHTLV-DRGNSIIVIEHN 907
++H V ++ +++ I H+
Sbjct: 174 EMIHRYVREQNVAVLWITHD 193
Score = 39.2 bits (91), Expect = 0.005
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 484 IHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTK 543
+ L L L++N LS GE QRI L + + +LDE + L + +
Sbjct: 114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALDESNKRN 171
Query: 544 LINTLKHL-RDTGNTVIVVEHD-EETMLAADHIVDIGP 579
+ + R+ V+ + HD ++ + AD ++ + P
Sbjct: 172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209
Score = 30.4 bits (68), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++K + L NIS+ + + I +TG SG GKS+L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTL 45
Score = 30.0 bits (67), Expect = 3.5
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L N++ S+ G F AITG SG GKST L
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLL 46
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 44.5 bits (105), Expect = 1e-04
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 811 ESLDFFAAIPTIHNKLT-------TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQ 863
E LDF A + LT L +G Q +LSGG R+ LA+ L +
Sbjct: 157 ERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAK 216
Query: 864 ATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHN 907
L +LDEPT L +A L N L T + +++ H+
Sbjct: 217 P---DLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD 254
Score = 38.0 bits (88), Expect = 0.013
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
QS +LSGG+ RV A L +LDEPT ++ D L + L +
Sbjct: 478 QSIASLSGGQKSRVAFAACTWNNP---HLLVLDEPT---NHLDRDSLGALAKALKNFNGG 531
Query: 901 IIVIEHNLEVIK 912
++++ H+ E I
Sbjct: 532 VVLVSHDEEFIS 543
Score = 36.5 bits (84), Expect = 0.035
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 414 RYMSSSPCTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKIS 473
R +++ + H ++ E +D ++L +T
Sbjct: 124 RAIANGQVSGFH---VEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLT------- 173
Query: 474 ESILKEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPS 533
L+EI +I L +G + + LS G R+ LA + + L +LDEP+
Sbjct: 174 ---LEEIYDKI--LAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPD--LLLLDEPT 226
Query: 534 IGLHQRDNTKLINTLKHLRDTGNTVIVVEHD 564
L L N +L+ T ++V HD
Sbjct: 227 NHLDVVAVAWLEN---YLQTWKITSLIVSHD 254
Score = 31.1 bits (70), Expect = 1.5
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 457 WFEQLPTQITQKANKISESILKEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLAS 516
+ ++ + +EI++ L GL ++ LS G Q+ R+A
Sbjct: 439 FLDKNVNAVDFMEKSFPGKTEEEIRRH---LGSFGLSGELALQSIASLSGG--QKSRVAF 493
Query: 517 QIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEE 566
+ L +LDEP+ L D L K L++ V++V HDEE
Sbjct: 494 AACTWNNPHLLVLDEPTNHL---DRDSLGALAKALKNFNGGVVLVSHDEE 540
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 44.5 bits (105), Expect = 1e-04
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 12/79 (15%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN---ILHTLVDRGNSII 902
LSGGE QR +A ++A +Y+ DEP++ Y D+ + L + +L++ II
Sbjct: 214 LSGGELQRFAIAMVCVQKAD---VYMFDEPSS---YLDVKQRLKAAITIRSLINPDRYII 267
Query: 903 VIEHNLEVIKTADWILDFG 921
V+EH+L V+ D++ DF
Sbjct: 268 VVEHDLSVL---DYLSDFI 283
Score = 39.1 bits (91), Expect = 0.005
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 497 LSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGN 556
L R LS GE QR +A + +Y+ DEPS L + K T++ L +
Sbjct: 207 LDREVEQLSGGELQRFAIA--MVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDR 264
Query: 557 TVIVVEHD 564
+IVVEHD
Sbjct: 265 YIIVVEHD 272
Score = 36.8 bits (85), Expect = 0.032
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHD---IAKLLN--ILHT 893
I Q LSGGE QRV LA L K A +Y++DEP+ L +K++ ILH
Sbjct: 450 IDQEVQGLSGGELQRVALALCLGKPA---DVYLIDEPSAYLDSEQRIIASKVIKRFILHA 506
Query: 894 LVDRGNSIIVIEHNL 908
+ V+EH+
Sbjct: 507 ----KKTAFVVEHDF 517
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 44.4 bits (105), Expect = 2e-04
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
LSGGE QR+ A+ L + LDE T+ L D + L + G ++I +
Sbjct: 91 VLSGGEQQRLAFARLLLHKP---KFVFLDEATSAL---DEESEDRLYQLLKELGITVISV 144
Query: 905 EHNLEVIKTADWILDFGPEGG 925
H + K D +LD EGG
Sbjct: 145 GHRPSLWKFHDRVLDLDGEGG 165
Score = 31.3 bits (71), Expect = 1.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 501 SNMLSNGESQRIRLASQIGSALTGVLY-ILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559
++LS GE QR+ A + L + LDE + L D + L++ G TVI
Sbjct: 89 DDVLSGGEQQRLAFARLL---LHKPKFVFLDEATSAL---DEESEDRLYQLLKELGITVI 142
Query: 560 VVEHDEETMLAADHIVDIGPEAGI 583
V H D ++D+ E G
Sbjct: 143 SVGHRPSLWKFHDRVLDLDGEGGW 166
Score = 30.9 bits (70), Expect = 1.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+++S E+ +++TG SG+GKSSL
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSL 43
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
L +GLG + + A LS G+ Q +++ L++ L +LDEP G+ + K
Sbjct: 131 LLATIGLGD-ERDRLAALLSHGQKQWLEIGMLLAQDPK---LLLLDEPVAGMTDAETEKT 186
Query: 888 LNILHTLVDRGNSIIVIEHNLEVIKT 913
+L +L +SI+V+EH++ ++
Sbjct: 187 AELLKSLA-GKHSILVVEHDMGFVRE 211
Score = 41.8 bits (98), Expect = 8e-04
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 435 AVKIAGKHIGEIADMSI-KKAQI--WFEQLPT----QITQKANKISESIL-----KEIQK 482
+ IA I +K Q FE L ++ +K + L E ++
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR 126
Query: 483 RI-HFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTG--VLYILDEPSIGLHQR 539
RI L IGL R + +LS+G+ Q + +IG L L +LDEP G+
Sbjct: 127 RIDELLATIGLGDER-DRLAALLSHGQKQWL----EIGMLLAQDPKLLLLDEPVAGMTDA 181
Query: 540 DNTKLINTLKHLRDTGNTVIVVEHDEETM-LAADHIVDIGPEAGINGGKIVAEGSPSQII 598
+ K LK L ++++VVEHD + AD + ++ G ++AEGS ++
Sbjct: 182 ETEKTAELLKSLAGK-HSILVVEHDMGFVREIADKV------TVLHEGSVLAEGSLDEVQ 234
Query: 599 AHP 601
P
Sbjct: 235 NDP 237
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 44.1 bits (104), Expect = 2e-04
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 25/121 (20%)
Query: 806 SMTVDESLDFFAAIPTIHNKLT----------TLKEVGLGYIKIGQSANTLSGGESQRVK 855
S TV E++ A P + L+ VGL K + LSGG+ QRV
Sbjct: 97 SRTVFENV----AFPLELAGVPKAEIKQRVAELLELVGL-SDKADRYPAQLSGGQKQRVA 151
Query: 856 LAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVD----RGNSIIVIEHNLEVI 911
+A+ L A + + DE T+ L D +IL L D G +I++I H +EV+
Sbjct: 152 IARAL---ANNPKILLCDEATSAL---DPETTQSILELLKDINRELGLTIVLITHEMEVV 205
Query: 912 K 912
K
Sbjct: 206 K 206
Score = 40.2 bits (94), Expect = 0.002
Identities = 38/147 (25%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 478 KEIQKRIHFLVEI-GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
EI++R+ L+E+ GL R LS G+ QR+ +A + A + + DE + L
Sbjct: 116 AEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIARAL--ANNPKILLCDEATSAL 172
Query: 537 HQRDNTKLINTLKHL-RDTGNTVIVVEHDEETMLA-ADHIVDIGPEAGINGGKIVAEGSP 594
++ LK + R+ G T++++ H+ E + D + A ++ G++V EG+
Sbjct: 173 DPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV------AVLDQGRLVEEGTV 226
Query: 595 SQIIAHP-TSLTGKYMSGKMSIKIPEK 620
S++ A+P ++T +++ + I +PE+
Sbjct: 227 SEVFANPKHAITQEFIGETLEIDLPEE 253
Score = 32.1 bits (73), Expect = 0.78
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 1 MSKIKNISI-----RGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
M +++N+S L ++S+E+P+ ++ + G SG+GKS+L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTL 48
Score = 29.8 bits (67), Expect = 3.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L +V+ IP G I G SG GKST L
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLL 49
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.9 bits (103), Expect = 2e-04
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 842 SANTLSGGESQRVKLAKE--LSKQATGNT---LYILDEPTTGLHYHDIAKLLNILHTLVD 896
TLSGGE LA LS G L LDEP L + KL IL L+
Sbjct: 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS 871
Query: 897 RGNSIIVIEHNLEVIKTADWILDFGPEGG 925
G II+I H E+ + AD + +GG
Sbjct: 872 DGRQIIIISHVEELKERADVRIRVKKDGG 900
Score = 40.0 bits (93), Expect = 0.003
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 498 SRNSNMLSNGESQRIRLA-----SQIGSALTGV-LYILDEPSIGLHQRDNTKLINTLKHL 551
R LS GE LA S + + L LDEP L + KL L+ L
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 552 RDTGNTVIVVEHDEETMLAADHIVDIGPEAG 582
G +I++ H EE AD + + + G
Sbjct: 870 LSDGRQIIIISHVEELKERADVRIRVKKDGG 900
Score = 30.8 bits (69), Expect = 1.9
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNK-LIVMTGVSGSGKSSLAFDTI 48
KI + ++ R ++I IE + + ++ G +G+GKSS+ D I
Sbjct: 2 KILRLRLKNFRSF--KDIDIEKLFDSGIFLIVGPNGAGKSSI-LDAI 45
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 43.3 bits (102), Expect = 4e-04
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
IG+ LSGG+ QR+ +A+ L K + ILDE T+ L + L L+ +
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDP---PILILDEATSALDTESERLVQAALERLM-K 186
Query: 898 GNSIIVIEHNLEVIKTADWIL 918
+ VI H L I+ AD I+
Sbjct: 187 NRTTFVIAHRLSTIENADRIV 207
Score = 34.4 bits (79), Expect = 0.16
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKH 550
G D + R LS G+ QRI +A + + ILDE + L + L+
Sbjct: 127 GYDTVIGERGVK-LSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQAALER 183
Query: 551 LRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
L T V+ H T+ AD IV + GKIV G+ +++A
Sbjct: 184 LMK-NRTTFVIAHRLSTIENADRIV------VLEDGKIVERGTHEELLA 225
Score = 32.5 bits (74), Expect = 0.57
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 4 IKNISIR--GAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA 44
KN++ R G L++IS+++P + + + G SGSGKS+L
Sbjct: 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV 45
Score = 30.9 bits (70), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTF--LISTLY 672
L++++ IP G A+ G SG GKST LI Y
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 42.9 bits (101), Expect = 4e-04
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899
+ LSGGE QRV LA+ L+ Q L +LDEP + L +LL L + N
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQP---ELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 900 -SIIVIEHNLE 909
+I + H+L
Sbjct: 183 IPVIFVTHDLS 193
Score = 37.9 bits (88), Expect = 0.012
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 487 LVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLIN 546
L +GLD+L L+R LS GE QR+ LA + + L +LDEP L + +L+
Sbjct: 116 LDLLGLDHL-LNRYPAQLSGGEKQRVALARALAAQPE--LLLLDEPFSALDRALRLQLLP 172
Query: 547 TLKHLRDTGN-TVIVVEHD-EETMLAADHIV 575
LK ++ N VI V HD E AD IV
Sbjct: 173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIV 203
Score = 31.0 bits (70), Expect = 1.6
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 652 FTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSP 708
T I G SG GKST L R I G + G ++G D IN P
Sbjct: 25 VTGIFGASGAGKSTLL---------RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 42.6 bits (100), Expect = 5e-04
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
+G+ LSGGE QRV +A+ + K + ILDE T+ L H + L V
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNP---PILILDEATSALDTHTEQAIQAALR-EVSA 447
Query: 898 GNSIIVIEHNLEVIKTADWIL 918
G + +VI H L I AD I+
Sbjct: 448 GRTTLVIAHRLSTIIDADEII 468
Score = 39.1 bits (91), Expect = 0.006
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 503 MLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVE 562
LS GE QR+ +A I + ILDE + L + L+ + G T +V+
Sbjct: 399 KLSGGEKQRVAIARTILKNPP--ILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIA 455
Query: 563 HDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
H T++ AD I+ ++ G+IV G+ +++A
Sbjct: 456 HRLSTIIDADEII------VLDNGRIVERGTHEELLAA 487
Score = 33.3 bits (76), Expect = 0.35
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 634 NARSNNLKNVTGSIPLGLFTAITGISGGGKSTFL 667
+ R L ++ +IPLG AI G SG GKST L
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL 306
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 42.6 bits (100), Expect = 5e-04
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 829 LKEVGL-GYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLH---YHDI 884
+VGL G++K + LSGG+ QRV LA+ L ++ + +LDEP + L ++
Sbjct: 114 AAQVGLAGFLK--RLPGELSGGQRQRVALARCLVRE---QPILLLDEPFSALDPALRAEM 168
Query: 885 AKLLNILHTLVDRGNSIIVIEHNLE 909
L++ L +R +++++ H+ E
Sbjct: 169 LALVSQLCD--ERKMTLLMVTHHPE 191
Score = 29.1 bits (65), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 646 SIPLGLFTAITGISGGGKSTFL 667
++P G AI G SG GKST L
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLL 42
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 42.3 bits (99), Expect = 6e-04
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 829 LKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
+ E+ GY ++G+ + LSGG+ QRV +A+ L + + ILDE T+ L D
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP---QVLILDEATSAL---DAESE 186
Query: 888 LNILHTLVD--RGNSIIVIEHNLEVIKTADWIL 918
+ L D +++VI H L ++ AD IL
Sbjct: 187 QQVQQALYDWPERRTVLVIAHRLSTVERADQIL 219
Score = 29.2 bits (65), Expect = 5.5
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 637 SNNLKNVTGSIPLGLFTAITGISGGGKSTF--LISTLYK-AAARIIMGSKYNPGIYDRID 693
+ L++V+ ++ G TA+ G SG GKST L+ Y+ ++++ K Y+
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS-QYEH-- 83
Query: 694 GLEYI-DKVVSINQSPI 709
+Y+ KV + Q P+
Sbjct: 84 --KYLHSKVSLVGQEPV 98
Score = 29.2 bits (65), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
LQ++S L ++ + G SGSGKS++
Sbjct: 30 LQDVSFTLHPGEVTALVGPSGSGKSTVV 57
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 41.3 bits (97), Expect = 0.001
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 807 MTVDESLDFFAAIPTIHNK------LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKEL 860
+TV E L F+A + + L+ +GL K + A TLSGG +++ LA L
Sbjct: 90 LTVREHLRFYARLKGLPKSEIKEEVELLLRVLGL-TDKANKRARTLSGGMKRKLSLAIAL 148
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLE 909
G ++ +LDEPT+GL + +++ + +G SII+ H+++
Sbjct: 149 ---IGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMD 193
Score = 36.7 bits (85), Expect = 0.036
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 482 KRIHFLVEIGLDYLTLS----RNSNMLSNGESQRIRLASQIGSALTG--VLYILDEPSIG 535
I VE+ L L L+ + + LS G + +L + AL G + +LDEP+ G
Sbjct: 108 SEIKEEVELLLRVLGLTDKANKRARTLSGG--MKRKL--SLAIALIGGPSVLLLDEPTSG 163
Query: 536 LHQRDNTKLINTLKHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSP 594
L + + + +R G ++I+ H +E D I A ++ GK+ GSP
Sbjct: 164 LDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRI------AIMSDGKLRCIGSP 216
Query: 595 SQI 597
++
Sbjct: 217 QEL 219
Score = 28.9 bits (65), Expect = 6.3
Identities = 7/43 (16%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 3 KIKNISIRGAREHN--LQNISIELPRNKLIVMTGVSGSGKSSL 43
+I+N++ + + ++S+ + + ++ + G +G+GK++
Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTT 44
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 41.3 bits (97), Expect = 0.001
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 807 MTVDESLDFFAAIPTI------HNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKEL 860
M V + L + A + + L+ + L + LS G Q+V+ +
Sbjct: 85 MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAV 143
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIK 912
L ILDEP +GL ++ L +++ L G ++I+ H +E+++
Sbjct: 144 IHDPE---LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192
Score = 34.4 bits (79), Expect = 0.15
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINT-LKHLRDTGNTVIVVE 562
LS G Q+++ + + L ILDEP GL N +L+ ++ L G TVI+
Sbjct: 129 LSKGNQQKVQFIAAVIHDPE--LLILDEPFSGLDPV-NVELLKDVIRELARAGKTVILST 185
Query: 563 HDEETMLA-ADHIVDIGPEAGINGGKIVAEG 592
H E + D ++ +N G+ V G
Sbjct: 186 HQMELVEELCDRVL------LLNKGRAVLYG 210
Score = 30.2 bits (68), Expect = 3.2
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++N++ R R L +IS + + ++ + G +G+GK++
Sbjct: 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTT 42
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 40.8 bits (96), Expect = 0.002
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 804 VLSMTVDESLDFF---------AAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRV 854
+ S T+ +LD F A+ + K G + + LS G+ Q +
Sbjct: 89 LFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL 148
Query: 855 KLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTA 914
LA+ L ++ + + +LDE T + A + + + +++ I H L+ I +
Sbjct: 149 CLARALLRK---SKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDS 204
Query: 915 DWIL 918
D IL
Sbjct: 205 DRIL 208
Score = 33.5 bits (77), Expect = 0.28
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 475 SILKEIQ-KRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPS 533
L+ + K + GLD + N LS G+ Q + LA + + +LDE +
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVEEGGEN-LSVGQRQLLCLARALLRK--SKILVLDEAT 167
Query: 534 IGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGS 593
+ + + T++ TV+ + H +T++ +D I+ ++ G++V S
Sbjct: 168 ASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDSDRIL------VLDKGRVVEFDS 220
Query: 594 P 594
P
Sbjct: 221 P 221
Score = 30.8 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 3 KIKNISIRGAREHN--LQNISIELPRNKLIVMTGVSGSGKSSLA 44
+ KN+S+R L+NIS + + + + G +GSGKSSL
Sbjct: 4 EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL 47
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 40.7 bits (95), Expect = 0.002
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLH---YHDIA 885
L VGL + LSGGE QRV LA+ L + + +LDEP L ++
Sbjct: 113 LARVGLAG-LEKRLPGELSGGERQRVALARVLVRD---KPVLLLDEPFAALDPALRAEML 168
Query: 886 KLLNILHTLVDRGNSIIVIEHNLEVIK 912
L+ LH + +++++ H E K
Sbjct: 169 DLVLDLHA--ETKMTVLMVTHQPEDAK 193
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 40.6 bits (95), Expect = 0.002
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVI 904
LSGG QRV +A+ L AT L +LDEP L +L + L L + +++++
Sbjct: 131 LSGGMRQRVAIARAL---ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV 187
Query: 905 EHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
H++ E + AD ++ G G E+ P I +P
Sbjct: 188 THDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDP 228
Score = 35.9 bits (83), Expect = 0.053
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 503 MLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVV 561
LS G QR+ +A + A L +LDEP L +L + L L +T TV++V
Sbjct: 130 QLSGGMRQRVAIARAL--ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV 187
Query: 562 EHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
HD +E + AD +V + G G ++ + +I P
Sbjct: 188 THDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDP 228
Score = 35.9 bits (83), Expect = 0.056
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+ +I+ +S L++I++ + + + + + G SG GKS+L
Sbjct: 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTL 45
Score = 33.6 bits (77), Expect = 0.24
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L+++ S+ G F AI G SG GKST L
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLL 46
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 40.1 bits (94), Expect = 0.003
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
++ +SA LSGG+ QR+ +A+ L A + ++DEPT+ L K+ ++ L +
Sbjct: 142 RLHKSALGLSGGQQQRLCIARAL---AVKPEVLLMDEPTSALDPISTLKIEELITELKKK 198
Query: 898 GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
+I+++ HN++ + +D+ F GE++ GP + I P
Sbjct: 199 -YTIVIVTHNMQQAARVSDYTAFFYL------GELVEFGPTDKIFTNP 239
Score = 39.3 bits (92), Expect = 0.005
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 42/177 (23%)
Query: 438 IAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEIQKRIHFLVEIGLDYLTL 497
I K + EI + S+KKA +W E++ R+H
Sbjct: 117 IKDKELDEIVESSLKKAALW--------------------DEVKDRLH------------ 144
Query: 498 SRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNT 557
+++ LS G+ QR+ +A + A+ + ++DEP+ L K+ + L+ T
Sbjct: 145 -KSALGLSGGQQQRLCIARAL--AVKPEVLLMDEPTSALDPISTLKIEELITELKKK-YT 200
Query: 558 VIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPT-SLTGKYMSGKM 613
+++V H M A + D A G++V G +I +P T Y+SG+
Sbjct: 201 IVIVTH---NMQQAARVSDY--TAFFYLGELVEFGPTDKIFTNPKHKRTEDYISGRF 252
Score = 37.4 bits (87), Expect = 0.018
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK++ IP TA+ G SG GKST L
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLL 50
Score = 36.3 bits (84), Expect = 0.039
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+++++++ +H L++I++++P+NK+ + G SG GKS+L
Sbjct: 9 EVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTL 49
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 39.8 bits (93), Expect = 0.003
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
IG+ LSGG+ Q V LA+ L + +LDEPT+ + + +L L L+
Sbjct: 134 IGERGRGLSGGQRQAVALARALLNDP---PILLLDEPTSAMDMNSEERLKERLRQLL-GD 189
Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASG 935
++I+I H ++ D I+ G I+A G
Sbjct: 190 KTLIIITHRPSLLDLVDRIIVM------DSGRIVADG 220
Score = 37.1 bits (86), Expect = 0.025
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 491 GLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKH 550
GLD R LS G+ Q + LA + + +LDEP+ + +L L+
Sbjct: 129 GLDLQIGERGRG-LSGGQRQAVALARAL--LNDPPILLLDEPTSAMDMNSEERLKERLRQ 185
Query: 551 LRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEG 592
L T+I++ H + D I+ ++ G+IVA+G
Sbjct: 186 LL-GDKTLIIITHRPSLLDLVDRIIV------MDSGRIVADG 220
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 39.9 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 496 TLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTG 555
L R S G Q++ +A + VL +LDEP+ GL L ++ LR G
Sbjct: 129 LLDRRVGGFSTGMRQKVAIARALVHD-PPVL-LLDEPTTGLDVMATRALREFIRQLRALG 186
Query: 556 NTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEG 592
++ H +E D +V ++ G++V EG
Sbjct: 187 KCILFSTHIMQEVERLCDRVVV------LHRGRVVYEG 218
Score = 39.1 bits (91), Expect = 0.006
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 807 MTVDESLDFFAAIPTI--HNKLTTLKEVGLGYIKIGQSAN----TLSGGESQRVKLAKEL 860
+T E+L++FA + + L+E+ + + + + S G Q+V +A+ L
Sbjct: 93 LTARENLEYFAGLYGLKGDELTARLEEL-ADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151
Query: 861 SKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNL-EVIKTADWI 917
+ +LDEPTTGL L + L G I+ H + EV + D +
Sbjct: 152 VHDPP---VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV 206
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 39.7 bits (93), Expect = 0.004
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 478 KEIQKRI-HFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGL 536
E ++R L +GL + + LS G QR+ LA + A+ + +LDEP L
Sbjct: 106 AEARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVALARAL--AVDPDVLLLDEPFSAL 162
Query: 537 HQRDNTKLINTL-KHLRDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAE 591
+L L R+TG TV++V HD +E + AD +V + G+IVAE
Sbjct: 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA----RPGRIVAE 215
Score = 39.3 bits (92), Expect = 0.005
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 829 LKEVGLG-----YIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHD 883
L+ VGL Y LSGG QRV LA+ L A + +LDEP + L
Sbjct: 116 LELVGLSGFENAYPH------QLSGGMRQRVALARAL---AVDPDVLLLDEPFSALDALT 166
Query: 884 IAKLLNILHTLVDR-GNSIIVIEHNL-EVIKTADWILDFGPEGG 925
+L L + G +++++ H++ E + AD ++ G
Sbjct: 167 REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPG 210
Score = 34.3 bits (79), Expect = 0.16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L++++ S+ G F A+ G SG GKST L
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLL 47
Score = 33.9 bits (78), Expect = 0.20
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L++IS+ + + + + G SG GKS+L
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTL 46
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 39.6 bits (92), Expect = 0.004
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGG+ QRV +A+ L + + + DEPT L A++++I+ L + G + +++
Sbjct: 142 LSGGQQQRVAIARALMMEPQ---VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVT 198
Query: 906 HNLEVIK 912
H +EV +
Sbjct: 199 HEVEVAR 205
Score = 36.5 bits (84), Expect = 0.039
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 504 LSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
LS G+ QR+ +A + + + + DEP+ L ++++ +K L +TG T ++V H
Sbjct: 142 LSGGQQQRVAIARAL--MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTH 199
Query: 564 DEETML-AADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKYMS 610
+ E A +V + G IV +G S T Y+S
Sbjct: 200 EVEVARKTASRVV------YMENGHIVEQGDASCFTEPQTEAFKNYLS 241
Score = 30.4 bits (68), Expect = 2.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++ I+ L +I+++ P + +V+ G SG+GKSSL
Sbjct: 4 QLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSL 44
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 39.4 bits (92), Expect = 0.005
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 504 LSNGE----SQRIRLA-SQIGSALTGVLYILDEPSIGL-HQRDNTKLINTLKHLRDTGN- 556
S GE S IRLA ++ + G+L LDEP+ L + L ++ + N
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGIL-ALDEPTTNLDEENIEESLAEIIEERKSQKNF 174
Query: 557 TVIVVEHDEETMLAADHIVDIGPEA 581
+IV+ HDEE + AADHI + +
Sbjct: 175 QLIVITHDEELVDAADHIYRVEKDG 199
Score = 33.2 bits (76), Expect = 0.30
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 845 TLSGGE------SQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
SGGE R+ LA+ + LDEPTT L D + L +++
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCG---ILALDEPTTNL---DEENIEESLAEIIEER 168
Query: 899 NS-----IIVIEHNLEVIKTADWILDFGPEG 924
S +IVI H+ E++ AD I +G
Sbjct: 169 KSQKNFQLIVITHDEELVDAADHIYRVEKDG 199
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 38.7 bits (90), Expect = 0.008
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 492 LDYLTLSRNSNMLSNGESQRIRLASQIGSAL--TGVLYILDEPSIGLHQRDNTKLINTLK 549
LD++ L ++ L S +R +I +L + LDEP+IGL + + ++
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 550 HL-RDTGNTVIVVEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQI 597
L + G T+++ H EE D + A I+ G+I+AEG+P ++
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRV------AIIDHGRIIAEGTPEEL 219
Score = 34.5 bits (79), Expect = 0.14
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 22/158 (13%)
Query: 790 ETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHN-KLTTLKEVGLGYIKIGQSAN---- 844
+ I F+D S+ D L T E+L A + + + + L ++ + ++A+
Sbjct: 73 RRIGIVFQDLSVDDEL--TGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIV 903
T SGG +R+++A+ L + LDEPT GL A + + L + G +I++
Sbjct: 131 TYSGGMRRRLEIARSL---VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187
Query: 904 IEHNL-EVIKTAD--WILDFGPEGGDGGGEIIASGPPE 938
H + E + D I+D G IIA G PE
Sbjct: 188 TTHYMEEAEQLCDRVAIID--------HGRIIAEGTPE 217
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 38.1 bits (88), Expect = 0.012
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 836 YIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLV 895
+G+ TLSGG+ R+ LA+ + K A LY+LD P Y D+ I + V
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDA---DLYLLDSPFG---YLDVFTEKEIFESCV 203
Query: 896 DR---GNSIIVIEHNLEVIKTADWIL 918
+ + I++ +E +K AD IL
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKIL 229
Score = 31.5 bits (71), Expect = 1.0
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 9/65 (13%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLAF----DTIHAEGQRRYVESLSTYARQFL---- 68
L+NI++++ + +++ +TG +GSGK+SL + +EG+ ++ +S ++ QF
Sbjct: 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS-FSSQFSWIMP 111
Query: 69 GTIKK 73
GTIK+
Sbjct: 112 GTIKE 116
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 37.6 bits (87), Expect = 0.020
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 807 MTVDESLDFFAAIP-----TIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELS 861
MTV++ L + A + I KL E K + LS G Q+++ +S
Sbjct: 87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF---IS 143
Query: 862 KQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLE 909
L ILDEP +GL ++ L + + L + G +II H +E
Sbjct: 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME 191
Score = 35.6 bits (82), Expect = 0.062
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 478 KEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLH 537
EIQK++ +E ++ LS G Q+I+ S + L ILDEP GL
Sbjct: 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLD 162
Query: 538 QRDNTKLINTLKHLRDTGNTVI----VVEHDEETMLAADHIVDIGPEAGINGGKIVAEG 592
+ L + + L++ G T+I +EH EE D ++ + G+ V G
Sbjct: 163 PVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL---CDRLLM------LKKGQTVLYG 212
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 37.2 bits (86), Expect = 0.020
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 865 TGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHN 907
G +YILDEP L +LL IL L D G II+ H+
Sbjct: 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS 187
Score = 31.8 bits (72), Expect = 1.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 526 LYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
+YILDEP L +L+ L+ L D+G +I+ H
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 36.9 bits (85), Expect = 0.029
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 828 TLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKL 887
TL+ VGL + L+ G+ QRV LA+ L + + I DE L ++L
Sbjct: 132 TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRP---KIIIADEALASLDMSMRSQL 188
Query: 888 LNILHTLVDR-GNSIIVIEHNLEVIK-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPL 945
+N++ L ++ G S I + ++ +IK +D +L GE++ G + PL
Sbjct: 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHE------GEVVERGSTADVLASPL 242
Score = 35.7 bits (82), Expect = 0.070
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
++ L +GL + +ML+ G+ QR+ LA + L + I DE L
Sbjct: 127 KQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL--ILRPKIIIADEALASLDMSM 184
Query: 541 NTKLINTLKHLRDT-GNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIA 599
++LIN + L++ G + I V + HI D ++ G++V GS + ++A
Sbjct: 185 RSQLINLMLELQEKQGISYIYVTQHIGMI---KHISD--QVLVMHEGEVVERGSTADVLA 239
Query: 600 HP-TSLTGKYMSG 611
P LT + +
Sbjct: 240 SPLHELTKRLIES 252
>gnl|CDD|31216 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 36.9 bits (85), Expect = 0.030
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 44/146 (30%)
Query: 554 TGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKI-VAEGSPS----QIIAHPT----SL 604
GNTV V++ E+T L+A + ++ EAG+ G + V G + ++AHP S
Sbjct: 160 AGNTV-VLKPSEQTPLSALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAISF 218
Query: 605 TGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKS 664
TG G+ + A + NLK VT GGKS
Sbjct: 219 TGSTAVGR------------------AIAAAAAANLKPVTL-------------ELGGKS 247
Query: 665 TFLIS---TLYKAAARIIMGSKYNPG 687
++ L A + G+ +N G
Sbjct: 248 PAIVLEDADLDAAVDAAVFGAFFNAG 273
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 36.4 bits (84), Expect = 0.043
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 826 LTTLKEVGLGYI-----KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLH 880
+ L +VGLG + + + LSGGE QR+ A+ L + LDE T+ L
Sbjct: 491 VAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP---KWVFLDEATSALD 547
Query: 881 YHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGG 925
+L +L + ++I + H + L+ + G
Sbjct: 548 EETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSRQLELLDDAG 591
Score = 32.5 bits (74), Expect = 0.60
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 KIKNISIRGAREHNL-QNISIELPRNKLIVMTGVSGSGKSSL 43
++N+S+R L ++ E+ + +++TG SG+GK+SL
Sbjct: 394 TLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSL 435
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 36.3 bits (84), Expect = 0.043
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 822 IHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881
+H+ T++E ++ LS + +R+ + EL A ++ LDEPT+GL
Sbjct: 89 VHSPNLTVREA----LRFSALLRGLSVEQRKRLTIGVEL---AAKPSILFLDEPTSGLDS 141
Query: 882 HDIAKLLNILHTLVDRGNSIIVIEH 906
++ L L D G +I+ H
Sbjct: 142 QAAYNIVRFLKKLADSGQAILCTIH 166
Score = 34.0 bits (78), Expect = 0.20
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
L N++G + G TA+ G SG GK+T L
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLL 50
Score = 32.9 bits (75), Expect = 0.46
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEH 563
QR RL + A + LDEP+ GL + ++ LK L D+G ++ H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
Score = 31.7 bits (72), Expect = 0.99
Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 48/185 (25%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQ 66
+ ++G + L NIS + L + G SG+GK++L D + +
Sbjct: 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTL-LDVLAGRKTAGVIT-------- 63
Query: 67 FLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFAR------IGI 120
G I + ++ H+P TV LR L IG+
Sbjct: 64 --GEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGV 121
Query: 121 -----PH-----SPTTGLPIESQ-------------------TISQMADRLLSFEQGTRM 151
P PT+GL ++ TI Q + + FE+ R+
Sbjct: 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI--FEKFDRL 179
Query: 152 YLLAP 156
LL
Sbjct: 180 LLLKR 184
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 36.0 bits (83), Expect = 0.048
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 453 KAQIWFEQLPTQITQKANKISESI-LKEIQKRIHFLVEI-GLDYLTLSRNSNMLSNGESQ 510
K Q+W++ LP + + K+ I E +R+ FL EI L+ L LS G+
Sbjct: 106 KLQLWWD-LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-LKWPVRKLSLGQRM 163
Query: 511 RIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIVVEHDEETML 569
R LA+ + VL+ LDEP++GL + LK + TV++ H + +
Sbjct: 164 RAELAAALLHPPK-VLF-LDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIA 221
Query: 570 A-ADHIVDIGPEAGINGGKIVAEGSPSQI 597
D ++ I+ G++V +G+ +Q+
Sbjct: 222 TLCDRVLL------IDQGQLVFDGTLAQL 244
Score = 31.0 bits (70), Expect = 1.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTL-VD 896
+ LS G+ R +LA L + LDEPT GL + A + L +
Sbjct: 149 FLKWPVRKLSLGQRMRAELAAALLHPPK---VLFLDEPTVGLDVNAQANIREFLKEYNEE 205
Query: 897 RGNSIIVIEHNLEVIKT 913
R ++++ H + I T
Sbjct: 206 RQATVLLTTHIFDDIAT 222
Score = 28.3 bits (63), Expect = 9.7
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
+Q+IS E+P+ +++ G +G+GKS+
Sbjct: 40 VQDISFEIPKGEIVGFLGANGAGKSTT 66
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 35.3 bits (81), Expect = 0.088
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 832 VGLGYIK--IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLN 889
GLG++ + LSGG R LA+ L ++ L +LDEPT L I L
Sbjct: 206 HGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKP---DLLLLDEPTNHLDLEAIVWLEE 262
Query: 890 ILHTLVDRGNSIIVIEH 906
L DR ++++ H
Sbjct: 263 YLAKY-DRI-ILVIVSH 277
Score = 31.9 bits (72), Expect = 1.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 845 TLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
LS G+ +RV A+ KQ L +LDEPT L I L ++ + ++++
Sbjct: 509 QLSDGQRRRVLFARLAVKQPH---LLLLDEPTNHLDIETIDALAEAIN---EFPGGVVLV 562
Query: 905 EHNLEVIK 912
H+ +I
Sbjct: 563 SHDFRLIS 570
Score = 29.9 bits (67), Expect = 3.2
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 487 LVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLIN 546
L +G + LS G R LA + L +LDEP+ L L
Sbjct: 205 LHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPD--LLLLDEPTNHLDLEAIVWLEE 262
Query: 547 TLKHLRDTGNTVIVVEHDEETM 568
L +++V H ++ +
Sbjct: 263 YLAKYDR--IILVIVSHSQDFL 282
Score = 29.9 bits (67), Expect = 3.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
KI+++S+ ++++++EL R + + G +GSGKS+
Sbjct: 77 KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTF 117
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 34.9 bits (80), Expect = 0.10
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L VGL + + LSGG QRV +A+ L A L +LDEP L D
Sbjct: 117 LALVGLEGAE-HKYIWQLSGGMRQRVGIARAL---AVEPQLLLLDEPFGAL---DALTRE 169
Query: 889 NILHTLVD----RGNSIIVIEHNL-EVIKTADWILDFGPEGG--------DGGGEIIASG 935
+ L+D G +++I H++ E + A ++ P G D A
Sbjct: 170 QMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGE 229
Query: 936 PPEAIAKEP 944
P AI +P
Sbjct: 230 PSRAIKSDP 238
Score = 30.2 bits (68), Expect = 2.6
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+++S+ + +L+V+ G SG GK++L
Sbjct: 21 LEDVSLTIASGELVVVLGPSGCGKTTL 47
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 34.8 bits (80), Expect = 0.11
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLV-DRGN 899
LS G+ R ++A L + + LDEPT GL + N L +RG
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEPE---ILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205
Query: 900 SIIVIEHNLEVI 911
++++ H ++ I
Sbjct: 206 TVLLTSHYMKDI 217
Score = 32.1 bits (73), Expect = 0.66
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 441 KHIGEIADMSIKKAQIWFEQLPTQITQKANK----ISESILKEIQKRIHFLVEIGLDYLT 496
K + I + +K Q+W++ LP + + + K+ + L+++ T
Sbjct: 91 KFLRRIGVVFGQKTQLWWD-LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT 149
Query: 497 LSRNSNMLSNGESQRIRLASQIGSALT---GVLYILDEPSIGLHQRDNTKLINTLKHL-R 552
R LS G QR+R ++I +AL +L+ LDEP+IGL + N LK R
Sbjct: 150 PVRQ---LSLG--QRMR--AEIAAALLHEPEILF-LDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 553 DTGNTVIVVEHD 564
+ G TV++ H
Sbjct: 202 ERGTTVLLTSHY 213
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 34.4 bits (79), Expect = 0.14
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 478 KEIQKRIHFLV---EIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSI 534
KEI ++I ++ E+G D++ L S+G + RLA I +AL + ++DE
Sbjct: 117 KEIDEKIDEIIEFSELG-DFIDLP--VKTYSSG--MKARLAFAIATALEPDILLIDE--- 168
Query: 535 GLHQRDNT---KLINTLKHLRDTGNTVIVVEHDEETM 568
L D K L+ L G TVI+V HD ++
Sbjct: 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205
Score = 30.5 bits (69), Expect = 2.5
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+++S E+PR + I + G +G+GKS+L
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTL 64
Score = 28.6 bits (64), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFL 667
LK+V+ +P G + G +G GKST L
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLL 65
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 34.2 bits (78), Expect = 0.19
Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 784 GQRYNPETLQIRFKDKSIADVLSMTVDESLD-------FFAAIPTIHNKLTTLKEVGLG- 835
++Y P++ ++ +++ ++ + + ++ + L GL
Sbjct: 438 EEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSD 497
Query: 836 YIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLV 895
+ + + LS G+ +R KLAK L A + ++DE L ++ + L
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLL---AERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 896 DR-GNSIIVIEHNLEVIK 912
G ++IV+ H EV
Sbjct: 555 REAGITLIVVTHRPEVGN 572
>gnl|CDD|34256 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 33.8 bits (77), Expect = 0.20
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 3 KIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+ +I ++ R + +++ +E+ R + V+ G +G+GKS+
Sbjct: 2 MLVSIKVKNYR--SFRSLDLEIRR--VNVIIGANGAGKSNF 38
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 33.7 bits (77), Expect = 0.25
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 29 LIVMTGVSGSGKSSLAFDTIHAEGQRRYVES 59
+IV+ GVSGSGKS++ + +++
Sbjct: 1 IIVVMGVSGSGKSTVG-KALAERLGAPFIDG 30
>gnl|CDD|34626 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 33.5 bits (76), Expect = 0.28
Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 20/224 (8%)
Query: 294 CHHCDGLGTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDS 353
+ + D + ++ + + S T SI D
Sbjct: 340 FLVVNNDDSSSIKDLPHQVGSNPFLEAHPEFSELLKNQSRGTTRDFRNKPTGWSSSIEDL 399
Query: 354 WDLL--SNENQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEI 411
L ++ + + ++ + S + L
Sbjct: 400 GQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLNNLY 459
Query: 412 IQRYMSSS-PCTICHGYRLKDESLAVKIAGKHIGE-----IADMSIKKAQIWFEQLPTQI 465
++ + RL K+ + I E + +KA+I+ L I
Sbjct: 460 RFYFVEHRKKTLTKNDSRLGSFISLNKLDIRRIKEDKRRKLFYSLKQKAKIFDPYL--HI 517
Query: 466 TQKANKISESILKEIQK----------RIHFLVEIGLDYLTLSR 499
+ +++ E +EI I F+ E G+D L+R
Sbjct: 518 KVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTR 561
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 33.3 bits (77), Expect = 0.35
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 44/146 (30%)
Query: 554 TGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKI-VAEGSPSQ----IIAHPT----SL 604
GNTV V++ E T L A + ++ EAG+ G + V G + + +HP S
Sbjct: 123 AGNTV-VLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKISF 181
Query: 605 TGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKS 664
TG GK ++ A + NLK VT L L GGKS
Sbjct: 182 TGSTAVGK------------------AIMRAAAENLKRVT----LEL---------GGKS 210
Query: 665 TFLI---STLYKAAARIIMGSKYNPG 687
++ + L A + G+ N G
Sbjct: 211 PLIVFDDADLDAAVKGAVFGAFGNAG 236
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 33.1 bits (76), Expect = 0.35
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 847 SGGESQRVKLAKELSKQATGNT-LYILDEPTTGLHYHDIAKLLNI---LHTLVDRGNSII 902
SGGE +R E+ + A ++ L ILDE +GL DI L I ++ L+ NSII
Sbjct: 153 SGGEKKR----NEILQMALLDSELAILDETDSGL---DIDALKIIAEGINKLMTSENSII 205
Query: 903 VIEH 906
+I H
Sbjct: 206 LITH 209
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 33.2 bits (76), Expect = 0.38
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVI 904
+SGGE +RV +A+ L + ++ D T GL ++L + T+ D + +
Sbjct: 119 ISGGERKRVSIAEAL---VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFV 174
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 32.9 bits (75), Expect = 0.39
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 478 KEIQKRIHFLV---EIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSI 534
KEI +++ ++ E+G D++ + S+G RLA + + + + +LDE
Sbjct: 122 KEIDEKVDEIIEFAELG-DFIDQPVKT--YSSG--MYARLAFSVATHVEPDILLLDEVLA 176
Query: 535 GLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML-AADHIVDIGPEAGINGGKIVAEGS 593
K + L L + T+++V HD + D + + G+I EGS
Sbjct: 177 VGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI------WLEHGQIRMEGS 230
Query: 594 PSQIIAH 600
P ++I
Sbjct: 231 PEEVIPA 237
Score = 32.5 bits (74), Expect = 0.57
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 615 IKIPEKRRQYNPNRMIHVINARSNN-----LKNVTGSIPLGLFTAITGISGGGKSTFL-- 667
+I ++ R+ + LK+++ I G I G +G GKST L
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 668 ISTLYK 673
I+ +YK
Sbjct: 73 IAGIYK 78
Score = 29.4 bits (66), Expect = 5.5
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 1 MSKIKNISIRGARE---HNLQNISIELPRNKLIVMTGVSGSGKSSL 43
++K ++ G + L++IS E+ + + + + G +G+GKS+L
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTL 69
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 32.8 bits (74), Expect = 0.47
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 833 GLGYIKIGQS--ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNI 890
GLG+ K Q SGG RV LA+ L + T L +LDEPT L + + L N
Sbjct: 398 GLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPT---LLMLDEPTNHLDLNAVIWLDNY 454
Query: 891 LHT 893
L
Sbjct: 455 LQG 457
>gnl|CDD|33754 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 32.7 bits (74), Expect = 0.55
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 2 SKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAF 45
+K+++I +E QN I +NK++V+ G +GSGK+++A
Sbjct: 204 AKMRDIVETIQKE---QNEIIRFEKNKILVVQGAAGSGKTTIAL 244
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 31.8 bits (72), Expect = 0.87
Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 37/172 (21%)
Query: 18 QNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVE 77
+N+S+E+P + +++TG SG GK+SL + L G + KP
Sbjct: 452 ENLSLEVPSGQNLLITGPSGCGKTSL-------------LRVLGGLWPSTGGKLTKPTDG 498
Query: 78 QIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIPHSPTTGLPIESQTISQ 137
L + Q+ P T+GT+ + ++++ P ++S++ S
Sbjct: 499 GPKDL---FFLPQR-----PYMTLGTLRD-----QVIY--------PLKAEDMDSKSASD 537
Query: 138 MADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKG-FQRVQIDGVFYH 188
+ +L + ++ L + + ++L G QR+ +FYH
Sbjct: 538 --EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587
Score = 28.3 bits (63), Expect = 9.4
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 826 LTTLKEVGLGYI----------KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEP 875
L L+ V LG++ + LS GE QR+ A+ + ILDE
Sbjct: 541 LRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP---KFAILDEC 597
Query: 876 TTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGG 925
T+ + L + G + I + H + K D++L G
Sbjct: 598 TSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKFHDYVLRMDGRGS 644
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 31.8 bits (72), Expect = 1.1
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 497 LSRNSNMLSNGE------SQRIRLASQIGSALTGVL--YILDEPSIGLHQRDNTKLINTL 548
L+R + LS GE S + L+ + + L +DE L + L
Sbjct: 117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL 176
Query: 549 KHLRDTGNTVIVVEHDEE 566
+ +R V V+ H EE
Sbjct: 177 ELIRTENRMVGVISHVEE 194
Score = 28.3 bits (63), Expect = 9.6
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 841 QSANTLSGGESQRVKLA-----KELSKQATGNTL--YILDEPTTGLHYHDIAKLLNILHT 893
+ +TLSGGE+ L+ E+ + G L +DE L + + L
Sbjct: 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178
Query: 894 LVDRGNSIIVIEH 906
+ + VI H
Sbjct: 179 IRTENRMVGVISH 191
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 31.2 bits (70), Expect = 1.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQ-ATGNTLYILDEPTTGLHYHDIAKLLNILHTLVD 896
K QS + LSGGE LA + Q Y+LDE L ++ ++ ++ +
Sbjct: 1059 KKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSK 1118
Query: 897 RGNSIIVIEHNLEVIKTAD 915
IVI H ++ AD
Sbjct: 1119 -ETQFIVITHRKGTMEAAD 1136
Score = 30.4 bits (68), Expect = 2.3
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 499 RNSNMLSNGESQRIRLA--SQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGN 556
++ ++LS GE LA I Y+LDE L + ++ +K +
Sbjct: 1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSK-ET 1120
Query: 557 TVIVVEHDEETMLAADHIV 575
IV+ H + TM AAD +V
Sbjct: 1121 QFIVITHRKGTMEAADRLV 1139
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 31.1 bits (70), Expect = 1.6
Identities = 54/271 (19%), Positives = 92/271 (33%), Gaps = 56/271 (20%)
Query: 2 SKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLA-------FDTIHAEGQR 54
+ I + ++ N + R+ I++ G GSGK++L + A
Sbjct: 406 FEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIA---- 461
Query: 55 RYVE--SLSTYARQFLGTIKK-------------------PDVEQIDGLSPTISIEQKNT 93
+VE S ST L I+K D++ + S + +
Sbjct: 462 -HVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVV 520
Query: 94 SHNPRSTVGTITEIHDYLRLLFARIGIPHSPTTGLPIESQTISQMADRLLSFEQGTRMYL 153
S + + + +I+ A I E QT++ + L F+ + L
Sbjct: 521 SERLAAFLNQVIKIYLKRNRKIAVIATGQ--------ELQTLNPLLVSPLLFQ--IVIAL 570
Query: 154 LAPIVRNRKGEYKKELAEILKKGFQRVQIDGVFYHISDAPDLDKKY-KHTIEVVVDRIVV 212
AP V RK EIL F + D + + Y + + V+R +
Sbjct: 571 PAPAVTRRK--------EILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA-I 621
Query: 213 HENIRERIVNSLRTCLQLTNGLAIATIADST 243
HE ERI N + LT L ++ D
Sbjct: 622 HEAFLERISNGPKL---LTKELFEKSLKDFV 649
>gnl|CDD|36598 KOG1384, KOG1384, KOG1384, tRNA delta(2)-isopentenylpyrophosphate
transferase [Translation, ribosomal structure and
biogenesis].
Length = 348
Score = 30.3 bits (68), Expect = 2.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 25 PRNKLIVMTGVSGSGKSSLAFD 46
++K++V+ G +G+GKS LA D
Sbjct: 5 SKDKVVVIMGATGAGKSRLAVD 26
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 30.3 bits (68), Expect = 2.6
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
LSGGE QR+ +A+ + +LDE T+ + K+ D G S++ I
Sbjct: 613 LSGGEKQRMGMARMFYHRP---KYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSIT 666
Query: 906 HNLEVIKTADWILDFGPEGG 925
H + K +L+F EGG
Sbjct: 667 HRPSLWKYHTHLLEFDGEGG 686
>gnl|CDD|176767 cd08789, CARD_IPS-1_RIG-I, Caspase activation and recruitment
domains (CARDs) found in IPS-1 and RIG-I-like RNA
helicases. Caspase activation and recruitment domains
(CARDs) found in IPS-1 (Interferon beta promoter
stimulator protein 1) and Retinoic acid Inducible Gene I
(RIG-I)-like DEAD box helicases. RIG-I-like helicases
and IPS-1 play important roles in the induction of
interferons in response to viral infection. They are
crucial in triggering innate immunity and in developing
adaptive immunity against viral pathogens. RIG-I-like
helicases, including MDA5 and RIG-I, contain two
N-terminal CARD domains and a C-terminal DEAD box RNA
helicase domain. They are cytoplasmic RNA helicases that
play an important role in host antiviral response by
sensing incoming viral RNA. Upon activation, the signal
is transferred to downstream pathways via the adaptor
molecule IPS-1 (MAVS, VISA, CARDIF), leading to the
induction of type I interferons. MDA5 and RIG-I
associate with IPS-1 through a CARD-CARD interaction. In
general, CARDs are death domains (DDs) found associated
with caspases. They are known to be important in the
signaling pathways for apoptosis, inflammation, and
host-defense mechanisms. DDs are protein-protein
interaction domains found in a variety of domain
architectures. Their common feature is that they form
homodimers by self-association or heterodimers by
associating with other members of the DD superfamily
including PYRIN and DED (Death Effector Domain). They
serve as adaptors in signaling pathways and can recruit
other proteins into signaling complexes.
Length = 84
Score = 30.4 bits (69), Expect = 2.8
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 470 NKISESILKEIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYIL 529
+K + + ++ H VE L YLT L+ + +RI+ A + +L
Sbjct: 2 DKEKKLKCRRVRVFFHIDVEEVLPYLTC------LTAEDKERIQAAENNSGNIKAAWTLL 55
Query: 530 DEPSIGLHQRDNTKLINTLKHLRDTGN 556
D L +RDN L L LR+ G
Sbjct: 56 DT----LVRRDNW-LEPFLDALRECGL 77
>gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 30.1 bits (68), Expect = 2.8
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 647 IPLGLFTAITGISG----------GGKS--TFLISTLYKAAARIIMGSKYNPGIYDRIDG 694
IPL FT + GI+ GGK+ FL++T A +++ + PG ID
Sbjct: 51 IPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDP 110
Query: 695 LEYIDKVVSINQSPIGHTPRSNPATYVGAFTP 726
+D S + P GA
Sbjct: 111 AT-LDTGAESEVSILDFLLDIIPTNIFGALAE 141
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 30.2 bits (68), Expect = 3.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 26 RNKLIVMTGVSGSGKSSLA---FDTIHAEGQRRYV 57
+ +I TG+SGSGKS++A + + A+G Y+
Sbjct: 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56
>gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate..
Length = 149
Score = 30.1 bits (68), Expect = 3.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 30 IVMTGVSGSGKSSLAF---DTIHAEGQRRYV 57
I +TG+SGSGKS++A + + G+ YV
Sbjct: 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYV 32
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 29.9 bits (67), Expect = 3.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 2 SKIKNISIRGAREHNLQN------ISIELPRNKLIVMTGVSGSGKSSLA 44
K + +R R N I++ + R +L+ + G +GSGKS+LA
Sbjct: 318 PDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 29.9 bits (68), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 26 RNKLIVMTGVSGSGKSSLAF---DTIHAEGQRRYV 57
R + TG+SGSGKS++A + A+G YV
Sbjct: 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYV 35
>gnl|CDD|32688 COG2861, COG2861, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 250
Score = 29.9 bits (67), Expect = 3.3
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 826 LTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIA 885
+ LKE GL ++ G AN+L+G K+AKE+ +++ DE T +
Sbjct: 144 MEALKERGLYFLDSGTIANSLAG------KIAKEIGVPVIKRDVFLDDEDT----EAAVL 193
Query: 886 KLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEP 944
K L+ L + S I I H + T + + E G E++ P A+ EP
Sbjct: 194 KQLDAAEKLARKNGSAIGIGHPHKN--TVAVLQQWLDELPARGIELV---PVSALLGEP 247
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 29.8 bits (67), Expect = 3.4
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNT-LYILDEPTTGLHYHDIAKLLNILHTLV 895
+ G+ LSGGE LA + Q + Y+LDE L + ++ +++ +
Sbjct: 86 VLQGKVEQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA 145
Query: 896 DRGNSIIVIEHNLEVIKTAD 915
+ IVI E+ + AD
Sbjct: 146 KHTSQFIVITLKKEMFENAD 165
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 29.9 bits (68), Expect = 3.4
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 882 HDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIA 941
++ +LLN + D I+ H V KT GD + G P A
Sbjct: 22 EELVELLNEYFSAFDE----IIERHGGTVDKTI----------GDAV--MAVFGLPGAHE 65
Query: 942 KEPL 945
Sbjct: 66 DHAE 69
>gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.0 bits (67), Expect = 3.5
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 830 KEVGLGYIK-IGQS-ANTLSGGESQRVKLAKELSK-----QATGNTLYILDEPTTGLHYH 882
KE + GQ NTLS GE + L+K + N + ++D+P + +
Sbjct: 512 KEKFYRIQREDGQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSN 571
Query: 883 DIAKLLNILHTLVDRGNSIIVIEHN 907
+ ++ ++ +IV+ HN
Sbjct: 572 ILFRVSVLVKEEKTNIKQVIVLTHN 596
>gnl|CDD|37663 KOG2452, KOG2452, KOG2452, Formyltetrahydrofolate dehydrogenase
[Nucleotide transport and metabolism].
Length = 881
Score = 29.6 bits (66), Expect = 3.9
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 751 VKGGRCEVCEGNGVIKIAMHFLPDVYITCD----VCQGQRYNPETLQIRFKDKSIADVLS 806
VK G VC GN V + F P V+ + + + + + P + RF D + VLS
Sbjct: 745 VKEGATLVCGGNQVPRPGFFFEPTVFTDVEDHMFIAKEESFGPVMIISRFADGDLDAVLS 804
Query: 807 MTVDESLDFFAAIPT 821
+ + T
Sbjct: 805 RANATEFGLASGVFT 819
>gnl|CDD|38750 KOG3542, KOG3542, KOG3542, cAMP-regulated guanine nucleotide
exchange factor [Signal transduction mechanisms].
Length = 1283
Score = 29.3 bits (65), Expect = 4.5
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 16/67 (23%)
Query: 538 QRDNTKLINTL-KHL---RDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGS 593
Q+D +++NT+ K++ + G V+VVEH E +D +G G IV +G+
Sbjct: 381 QQDYCRILNTVEKNIEKVEEEGEIVMVVEHRE---------LD---RSGTRKGHIVIKGT 428
Query: 594 PSQIIAH 600
P ++I H
Sbjct: 429 PERLIMH 435
>gnl|CDD|37335 KOG2124, KOG2124, KOG2124, Glycosylphosphatidylinositol anchor
synthesis protein [Signal transduction mechanisms].
Length = 883
Score = 29.5 bits (66), Expect = 4.6
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 831 EVGLGYIKIGQS--ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
+ LGY+ + + A L Q ++ K + Y P L I L
Sbjct: 332 ILPLGYLNVSEEYKAEALHLNALQLLEQYLAKIKLHESGSFYKFLPPYKSLSMTQIEYYL 391
Query: 889 NILHTLVDRGNSIIVIEHNLEVIKTADWILDF 920
+ + +L+ + N IE E++K A LD+
Sbjct: 392 SQIDSLIKKENYSEAIELCKELMKLALEGLDY 423
>gnl|CDD|144326 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain (4 repeats). The
central cysteine-rich (CR) domain of DnaJ proteins
contains four repeats of the motif CXXCXGXG where X is
any amino acid. The isolated cysteine rich domain folds
in zinc dependent fashion. Each set of two repeats binds
one unit of zinc. Although this domain has been
implicated in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 79
Score = 29.3 bits (66), Expect = 4.9
Identities = 8/30 (26%), Positives = 8/30 (26%), Gaps = 6/30 (20%)
Query: 756 CEVCEGNGVIKIAMHFLPDVYITCDVCQGQ 785
C C G G TC C G
Sbjct: 14 CPHCHGTGAKP------GKKPKTCPTCNGS 37
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain.
Length = 122
Score = 29.3 bits (66), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 775 VYITCDVCQGQRYNPETLQIRFKDKSIADVLSMTVDES 812
V+ D G+ PE L IRFK K AD +E+
Sbjct: 83 VWTAADFADGEG-KPEQLAIRFKTKEEADSFKKKFEEA 119
>gnl|CDD|32257 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 29.1 bits (65), Expect = 6.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 25 PRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVEQIDGLSP 84
R +I++ G SG GKS++A + G R + + R+ L I P+ L P
Sbjct: 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVIS--TDSIREVLRKIISPE------LLP 138
Query: 85 TI 86
T+
Sbjct: 139 TL 140
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 29.0 bits (66), Expect = 6.9
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 631 HVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLIS---TLYKAAARIIMGSKYNPG 687
HV+ A + NL VT L L GGKS +I+ L KAA RI G N G
Sbjct: 192 HVMRAAAENLTPVT----LEL---------GGKSPAIIAPDADLAKAAERIAFGKLLNAG 238
>gnl|CDD|37693 KOG2482, KOG2482, KOG2482, Predicted C2H2-type Zn-finger protein
[Transcription].
Length = 423
Score = 28.8 bits (64), Expect = 7.6
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 767 IAMHFLPDVYITCDVCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIH 823
+ + C C NP L K D+L + D SL+F+ + I+
Sbjct: 270 WNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVIN 326
>gnl|CDD|173936 cd08177, MAR, Maleylacetate reductase is involved in many aromatic
compounds degradation pathways of aerobic microbes.
Maleylacetate reductases (MAR) play an important role in
the degradation of aromatic compounds in aerobic
microbes. In fungi and yeasts, the enzymes are involved
in the catabolism of compounds such as phenol, tyrosine,
benzoate, 4-hydroxybenzoate and resorcinol. In bacteria,
the enzymes contribute to the degradation of resorcinol,
2,4-dihydroxybenzoate ([beta]-resorcylate) and
2,6-dihydroxybenzoate ([gamma]-resorcylate) via
hydroxyquinol and maleylacetate. Maleylacetate
reductases catalyze NADH- or NADPH-dependent reduction,
at the carbon-carbon double bond, of maleylacetate or
2-chloromaleylacetate to 3-oxoadipate. In the case of
2-chloromaleylacetate, Maleylacetate reductases
initially catalyses the NAD(P)H-dependent dechlorination
to maleylacetate, which is then reduced to 3-oxoadipate.
This enzyme is a homodimer. It is inhibited by
thiol-blocking reagents such as p-chloromercuribenzoate
and Hg++, indicating that the cysteine residue is
probably necessary for the catalytic activity of
maleylacetate reductase.
Length = 337
Score = 28.7 bits (65), Expect = 9.1
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 571 ADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTG 606
AD IV IG + I+ K +A + IIA PT+L+G
Sbjct: 78 ADGIVAIGGGSTIDLAKAIALRTGLPIIAIPTTLSG 113
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 213
Score = 28.4 bits (63), Expect = 9.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 4 IKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+KN+S+R L N++ + + +++ + G SG GKS+L
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTL 44
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 28.3 bits (64), Expect = 9.2
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 65/178 (36%)
Query: 554 TGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTSLTGKYMSGKM 613
GNTV V++ E T L A + ++ EAG+ G + ++ G +
Sbjct: 119 AGNTV-VLKPSELTPLTALALAELLQEAGLPPGVV-------NVVPGGGDEVGAALLSHP 170
Query: 614 SIKIPEKRRQYNPNRMI----------HVINARSNNLKNVTGSIPLGLFTAITGISGGGK 663
+ I ++ A + NLK VT GGK
Sbjct: 171 RV------------DKISFTGSTAVGKAIMKAAAENLKPVTL-------------ELGGK 205
Query: 664 STFLI---STLYKAAARIIMGSKYNPG--------------IYDRIDGLEYIDKVVSI 704
S ++ + L A + G+ +N G IYD E+++K+V++
Sbjct: 206 SPVIVDEDADLDAAVEGAVFGAFFNAGQICTAASRLLVHESIYD-----EFVEKLVTV 258
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 28.4 bits (63), Expect = 9.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 1 MSKIKNISIRGAR---EHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
MS I +SIRG R + + I P L ++ G +G+GK+++
Sbjct: 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSP---LTLIVGANGTGKTTI 43
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 28.4 bits (63), Expect = 9.4
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 652 FTAITGISGGGKST---FLISTLYKAAARIIMGSKYNPGIYDRIDGLE 696
T I G +G GK+ FL++ K I +D+ +G
Sbjct: 438 HTLIIGPTGAGKTVLLSFLLAQALKYGNPQI-------VAFDKDNGAY 478
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 28.6 bits (65), Expect = 9.5
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 555 GNTVIVVEHDEETMLAADHIVDIGPEAGINGGKI-VAEGSPSQI----IAHPT----SLT 605
G TV V++ EET L+A + ++ EAG+ G + V GSP++I A P S T
Sbjct: 145 GCTV-VLKPAEETPLSALALAELAEEAGLPAGVLNVVTGSPAEIGEALCASPRVRKISFT 203
Query: 606 G 606
G
Sbjct: 204 G 204
>gnl|CDD|30395 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 28.3 bits (63), Expect = 9.7
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 675 AARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATYVGAFTPIRDLFS 732
++ G N G+ D DG + KV S N P P AT VG IRD+ S
Sbjct: 75 GEYVLSGPGDNAGVVDIGDGWAVVFKVESHNH-PSAIEPYQGAATGVGGI--IRDVLS 129
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,275,862
Number of extensions: 614663
Number of successful extensions: 2896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2638
Number of HSP's successfully gapped: 555
Length of query: 959
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 856
Effective length of database: 4,038,010
Effective search space: 3456536560
Effective search space used: 3456536560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.9 bits)