BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (959 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 1971 bits (5107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/959 (100%), Positives = 959/959 (100%)

Query: 1   MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60
           MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL
Sbjct: 1   MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60

Query: 61  STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120
           STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI
Sbjct: 61  STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120

Query: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180
           PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV
Sbjct: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180

Query: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240
           QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA
Sbjct: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240

Query: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300
           DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL
Sbjct: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300

Query: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360
           GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE
Sbjct: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360

Query: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420
           NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP
Sbjct: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420

Query: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480
           CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI
Sbjct: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480

Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
           QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD
Sbjct: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540

Query: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
           NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH
Sbjct: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600

Query: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660
           PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG
Sbjct: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660

Query: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720
           GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY
Sbjct: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720

Query: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780
           VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD
Sbjct: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780

Query: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840
           VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG
Sbjct: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840

Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
           QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS
Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900

Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959
           IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK
Sbjct: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 43.1 bits (100), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIV 560
           NMLS G  QR+  A    +     + ++DEP   L      +L + L  L R    T++ 
Sbjct: 168 NMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225

Query: 561 VEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS 603
           V HD  E     + I      A + GG+I+  G+P +II HP +
Sbjct: 226 VSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHPAN 263



 Score = 38.9 bits (89), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSII 902
           N LSGG  QRV  A+     ATG  + ++DEP + L      +L + L  L  +   +I+
Sbjct: 168 NMLSGGMKQRVGFARAF---ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224

Query: 903 VIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSI 955
            + H++ E  +  + I          GG II  G P+ I   P + Y  +F++ +
Sbjct: 225 FVSHDINEAFRLGNRIAIM------EGGRIIQCGTPQEIILHPANCYVSEFIQKL 273



 Score = 26.2 bits (56), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 20/23 (86%)

Query: 21 SIELPRNKLIVMTGVSGSGKSSL 43
          ++E+ + +++V+ G+SG+GKS+L
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTL 71


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 42.4 bits (98), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQAT 865
           M  +E +   A     H+ + +L +   GY   +G++ + LSGG+ QR+ +A+ + +   
Sbjct: 453 MATEEEMIEIAKSANAHDFIMSLPQ---GYDTYVGENGSNLSGGQKQRIAIARAMLRD-- 507

Query: 866 GNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918
           G+ L +LDE T+ L  H    +   L  L+ +G + IVI H +  I  AD I+
Sbjct: 508 GHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558



 Score = 36.2 bits (82), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 500 NSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559
           N + LS G+ QRI +A  +     G + +LDE +  L       +   L  L   G T I
Sbjct: 486 NGSNLSGGQKQRIAIARAM--LRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542

Query: 560 VVEHDEETMLAADHIVDI 577
           V+ H   T++ ADHI+ I
Sbjct: 543 VIAHRISTIIEADHIIFI 560


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 41.2 bits (95), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
           K  ++   LSGGE QR  LAK L ++     L +LDEP  G+ +     L  ++ ++   
Sbjct: 119 KYNRNIKDLSGGEFQRALLAKALLRKP---NLLVLDEPLQGIDFPGELSLYELITSVRQS 175

Query: 898 -GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
            G  I++I HNL  V+ + D ++            I   GPP+ I
Sbjct: 176 TGCGILLISHNLHMVMASTDTVICL-------NNRICYQGPPQTI 213



 Score = 27.3 bits (59), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
          LQ+I+  +  N+++ + G +GSGKS++A
Sbjct: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 40.0 bits (92), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
           +G+    LSGGE QRV +A+ + K      + I DE T+ L       +   L TL  + 
Sbjct: 487 VGERGLKLSGGEKQRVSIARAILKNP---PIIIFDEATSSLDIITERHIQTALATL-SKN 542

Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLK 953
            + +VI H L  I  AD I+ F        G ++ SG  E +  +   YT  + K
Sbjct: 543 RTTLVIAHRLSTITDADNIIVFDQ------GTVVESGSHENLISQGGIYTSMWKK 591


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 38.5 bits (88), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 804 VLSMTVDESLDFFAAIPTIHNKLTTLKEVGL-GYIKIGQSAN----TLSGGESQRVKLAK 858
           ++  +V E++ F   I  I++K    + + L  Y+ + Q AN     +SGGE QRV + +
Sbjct: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICR 159

Query: 859 ELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVIEHNLEVIKTAD 915
            ++ +     + + DEPT  L      ++ +IL  LV R G + ++  HN ++    D
Sbjct: 160 AIANKP---LIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214



 Score = 27.3 bits (59), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 492 LDYLTLS----RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINT 547
           L Y+ +S    R S+ +S GE QR+ +   I +    ++ + DEP+  L  +   ++ + 
Sbjct: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSI 188

Query: 548 LKHL-RDTGNTVIVVEHDEETMLAADHIVDI 577
           LK+L   +G   ++  H+ +     D  + I
Sbjct: 189 LKYLVVRSGLAALIATHNHDLASQMDRQITI 219


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 37.7 bits (86), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 15/99 (15%)

Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVD-RGNSIIVI 904
           +SGG+ QRV LA+ L +Q     + +LDEP          ++L +L  + D R  ++++I
Sbjct: 130 MSGGQRQRVALARCLIRQ---KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186

Query: 905 EHNLE---VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
            HNLE    I T   ++         GG+I+  G P+ +
Sbjct: 187 SHNLEDSMQIATRFIVI--------AGGQIVYDGDPDRL 217


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 37.4 bits (85), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
           Q   +LSGG+  RV LAK L    +G  + +LDEPT  L    ++ L + L      G +
Sbjct: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENFA--GCA 488

Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEI-IASGPPEAIAKEPLSYTGKFL 952
           +I+    + + + A  IL F     +G G +    G  E   K+ LS + + L
Sbjct: 489 VIISHDRMFLDRLATHILAF-----EGNGHVEWFEGNFEEYEKDKLSRSSRVL 536



 Score = 25.4 bits (54), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899
           G +  +LSGGE +RV L K L        L    EPT  L    IA +   L    +   
Sbjct: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLD---EPTNHLDAETIAWMEKYLR---EYSG 204

Query: 900 SIIVIEHNLEVI-KTADWILD 919
           +++++ H+   +    +WIL+
Sbjct: 205 AVLMVTHDRYFLDNVTNWILE 225


>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 262

 Score = 37.0 bits (84), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902
           A  LSGG+ +R+++A+ L    +  +  +LDEP  G+    I+ +  ++  L  RG  I+
Sbjct: 156 APLLSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212

Query: 903 VIEHNLEVIKT 913
           + +HN+  I T
Sbjct: 213 ITDHNVHEILT 223


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score = 36.2 bits (82), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911
           QR  +A+ L  Q     + + DEPT+ L    + ++L+I+  L + G +++ + H +   
Sbjct: 159 QRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFA 215

Query: 912 K-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPL-SYTGKFLKSIL 956
           +  AD ++          G+I+    PE     P    T  FL  I+
Sbjct: 216 RQVADRVVFM------DQGQIVEQNSPEEFFNNPQHERTQAFLSQII 256



 Score = 28.9 bits (63), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43
          H L++I++ + R + +++ G SGSGKS+L
Sbjct: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59



 Score = 26.9 bits (58), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 507 GESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEE 566
           GESQR  +A  +   +   + + DEP+  L      ++++ +  L + G T++ V H+  
Sbjct: 156 GESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE-- 211

Query: 567 TMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
            M  A  + D      ++ G+IV + SP +   +P
Sbjct: 212 -MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243


>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 36.2 bits (82), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 796 FKDKSIADVLSMTVDESLDFFAAI--PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQR 853
           F   ++ + +SM + E L+  A +    +H K+     VGL           LSGG  +R
Sbjct: 102 FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAI---VGLPPETANLMPFQLSGGMIKR 158

Query: 854 VKLAKELSKQATGNTLYILDEPTTGLH---YHDIAKLL-NILHTLVDRGNSIIVIEHNL 908
           V LA+ L   A    L  LDEPT+GL      +  KLL  + H+L   G S+ +I H+L
Sbjct: 159 VSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL---GLSVYMITHDL 211


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 36.2 bits (82), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
           L+ VG+  ++  Q    LS G+ +RV LA+ L++++    + I+DEP   + +    +++
Sbjct: 132 LENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTEREMI 187

Query: 889 NILHTLVDRGNSIIVIEHNLEVI 911
            +L +L++    I+V  HN+  I
Sbjct: 188 FLLKSLLNEDIMILVSTHNINSI 210



 Score = 27.3 bits (59), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 21/27 (77%)

Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
          L+++++ +P N +  + G++G+GKS+L
Sbjct: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54



 Score = 26.9 bits (58), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%)

Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYD-------RI 692
           L++V   IP    TA+ G++G GK     STL++A   +I   K +  I++       + 
Sbjct: 28  LEDVNLFIPENTITALIGLNGAGK-----STLFQAIMGLIPLDKGSISIFNQTVENALKA 82

Query: 693 DGLEYIDKVVSINQS-PI 709
           D + YI +  SI+ + PI
Sbjct: 83  DLIAYIPQTESIDWTFPI 100


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score = 35.8 bits (81), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
           ++   A+ LSGG+ QRV +A+ L   A    + ++DEP + L     A +  ++H L + 
Sbjct: 143 RLFHDASLLSGGQQQRVCIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRE- 198

Query: 898 GNSIIVIEHNLE 909
             +I+++ H+++
Sbjct: 199 SLTIVIVTHSMQ 210



 Score = 28.9 bits (63), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 17/61 (27%)

Query: 607 KYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF 666
           K +S K+S+   EKR  ++ N            LK     IP    TA+ G SG GKSTF
Sbjct: 6   KMISNKVSVCYGEKRALFDIN------------LK-----IPQNSVTALIGPSGCGKSTF 48

Query: 667 L 667
           L
Sbjct: 49  L 49



 Score = 26.9 bits (58), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 7  ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
          +S+    +  L +I++++P+N +  + G SG GKS+ 
Sbjct: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTF 48


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 34.3 bits (77), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
           +G  A  LS G+ QR+ +A+ + K    + + +LDE  + L   +  K+  +L     RG
Sbjct: 420 LGDGAVHLSTGQIQRIAIARAILKD---SPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475

Query: 899 NSIIVIEHNLEVIKTADWIL 918
            + I   H L  I+ AD + 
Sbjct: 476 RTTIFASHRLSAIQDADMVF 495



 Score = 26.2 bits (56), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 592 GSPSQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNN-----------L 640
           G  SQ IA    L  + +  K+ I  P   R + P+ ++  ++ RS +           L
Sbjct: 249 GGISQAIASLRRLR-ELIVCKLDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSIL 306

Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAARIIMGSKYNPGIYDRIDGLEYI 698
           KNV  ++  G   A+ G SG GK++   LI   Y   +    GS    GI  R+  LE I
Sbjct: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS----GSVEIEGIDLRLLSLEEI 362

Query: 699 DKVVS-INQSPI 709
            + ++ + Q PI
Sbjct: 363 RRFIAWVPQHPI 374


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 32.3 bits (72), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML 569
           Q+IRL+  I +     + ++DEP   L           LK  ++   T++++ HD   + 
Sbjct: 473 QKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530

Query: 570 AADHIVDIGPEAG 582
            +D  +   P  G
Sbjct: 531 MSDFSLIFHPIQG 543



 Score = 30.4 bits (67), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911
           Q+++L++ +   A    + ++DEP   L          +L    +   +I++I H+  +I
Sbjct: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529

Query: 912 KTADWILDFGPEGGDGGG 929
             +D+ L F P  G   G
Sbjct: 530 SMSDFSLIFHPIQGSLFG 547



 Score = 28.9 bits (63), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 5   KNISIRGAREHNL--QNISIELPRNKLIVMTGVSGSGKSSL 43
           KNI  R  +   L  QN+S  +P     ++ G SG GKS+ 
Sbjct: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374



 Score = 24.3 bits (51), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF 666
           +N++ +IP G    I G SG GKS F
Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNF 374


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 31.2 bits (69), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)

Query: 68  LGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF--------ARIG 119
           L T +KPD+  ID +       Q   S    S+ GT+ ++   ++ +         A + 
Sbjct: 162 LITNEKPDLVIIDSI-------QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214

Query: 120 IPHSPTTGLPIESQTISQMADRLLSFEQGTRM----YLLAPIVRNRKGEYKK-ELAEILK 174
           + H    G     + I  M D +L FE GTR     Y +   V+NR G   +  + E+  
Sbjct: 215 VGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSD 274

Query: 175 KGFQRV 180
           KG Q V
Sbjct: 275 KGLQEV 280


>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 307

 Score = 25.8 bits (55), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 385 SNLSFRGIIPTLEKRWSEADSSLLQ 409
           ++LSF+ II TL + W++   ++LQ
Sbjct: 9   NDLSFQNIILTLTQYWAQQGCTILQ 33


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 25.8 bits (55), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881
           I IG+      G     V+  +E  ++A G T Y+  EP +  HY
Sbjct: 40  IVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS--HY 82


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 25.0 bits (53), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
          LQ++ + +   + I + G +GSGKS+L
Sbjct: 21 LQDVCLSIKPKERICLVGCNGSGKSTL 47


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 25.0 bits (53), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 27  NKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVEQIDGLSPTI 86
           ++++++ G SGSGKS LA   I ++  R         + +F    K  D   ID   P +
Sbjct: 64  SRVVILVGPSGSGKSCLA--NIWSDKSR---------STRFSNIAKSLDSILIDTRKPVL 112

Query: 87  SIEQKNTSHNPRSTVGTITEIHDY 110
             +      N       I  IH Y
Sbjct: 113 LEDIDLLDFNDTQLFHIINSIHQY 136


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 25.0 bits (53), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 24  LPRNKLIVMTGVSGSGKSSLA 44
           L R+ LI++ G  G GK+SLA
Sbjct: 216 LQRSDLIIIAGRPGMGKTSLA 236


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,986
Number of Sequences: 1233
Number of extensions: 26455
Number of successful extensions: 143
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 56
length of query: 959
length of database: 328,796
effective HSP length: 83
effective length of query: 876
effective length of database: 226,457
effective search space: 198376332
effective search space used: 198376332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)