BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] (959 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 1971 bits (5107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 959/959 (100%), Positives = 959/959 (100%) Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL Sbjct: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60 Query: 61 STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120 STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI Sbjct: 61 STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120 Query: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV Sbjct: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180 Query: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA Sbjct: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240 Query: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL Sbjct: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300 Query: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE Sbjct: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360 Query: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP Sbjct: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420 Query: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI Sbjct: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480 Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD Sbjct: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540 Query: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH Sbjct: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600 Query: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG Sbjct: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660 Query: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY Sbjct: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720 Query: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD Sbjct: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780 Query: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG Sbjct: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840 Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900 Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK Sbjct: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 43.1 bits (100), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%) Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIV 560 NMLS G QR+ A + + ++DEP L +L + L L R T++ Sbjct: 168 NMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225 Query: 561 VEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS 603 V HD E + I A + GG+I+ G+P +II HP + Sbjct: 226 VSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHPAN 263 Score = 38.9 bits (89), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%) Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSII 902 N LSGG QRV A+ ATG + ++DEP + L +L + L L + +I+ Sbjct: 168 NMLSGGMKQRVGFARAF---ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 Query: 903 VIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSI 955 + H++ E + + I GG II G P+ I P + Y +F++ + Sbjct: 225 FVSHDINEAFRLGNRIAIM------EGGRIIQCGTPQEIILHPANCYVSEFIQKL 273 Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 20/23 (86%) Query: 21 SIELPRNKLIVMTGVSGSGKSSL 43 ++E+ + +++V+ G+SG+GKS+L Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTL 71 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 42.4 bits (98), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQAT 865 M +E + A H+ + +L + GY +G++ + LSGG+ QR+ +A+ + + Sbjct: 453 MATEEEMIEIAKSANAHDFIMSLPQ---GYDTYVGENGSNLSGGQKQRIAIARAMLRD-- 507 Query: 866 GNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918 G+ L +LDE T+ L H + L L+ +G + IVI H + I AD I+ Sbjct: 508 GHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558 Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 500 NSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559 N + LS G+ QRI +A + G + +LDE + L + L L G T I Sbjct: 486 NGSNLSGGQKQRIAIARAM--LRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542 Query: 560 VVEHDEETMLAADHIVDI 577 V+ H T++ ADHI+ I Sbjct: 543 VIAHRISTIIEADHIIFI 560 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 41.2 bits (95), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%) Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897 K ++ LSGGE QR LAK L ++ L +LDEP G+ + L ++ ++ Sbjct: 119 KYNRNIKDLSGGEFQRALLAKALLRKP---NLLVLDEPLQGIDFPGELSLYELITSVRQS 175 Query: 898 -GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940 G I++I HNL V+ + D ++ I GPP+ I Sbjct: 176 TGCGILLISHNLHMVMASTDTVICL-------NNRICYQGPPQTI 213 Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 21/28 (75%) Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44 LQ+I+ + N+++ + G +GSGKS++A Sbjct: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 40.0 bits (92), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 10/115 (8%) Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898 +G+ LSGGE QRV +A+ + K + I DE T+ L + L TL + Sbjct: 487 VGERGLKLSGGEKQRVSIARAILKNP---PIIIFDEATSSLDIITERHIQTALATL-SKN 542 Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLK 953 + +VI H L I AD I+ F G ++ SG E + + YT + K Sbjct: 543 RTTLVIAHRLSTITDADNIIVFDQ------GTVVESGSHENLISQGGIYTSMWKK 591 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 38.5 bits (88), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 804 VLSMTVDESLDFFAAIPTIHNKLTTLKEVGL-GYIKIGQSAN----TLSGGESQRVKLAK 858 ++ +V E++ F I I++K + + L Y+ + Q AN +SGGE QRV + + Sbjct: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICR 159 Query: 859 ELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVIEHNLEVIKTAD 915 ++ + + + DEPT L ++ +IL LV R G + ++ HN ++ D Sbjct: 160 AIANKP---LIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214 Score = 27.3 bits (59), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Query: 492 LDYLTLS----RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINT 547 L Y+ +S R S+ +S GE QR+ + I + ++ + DEP+ L + ++ + Sbjct: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSI 188 Query: 548 LKHL-RDTGNTVIVVEHDEETMLAADHIVDI 577 LK+L +G ++ H+ + D + I Sbjct: 189 LKYLVVRSGLAALIATHNHDLASQMDRQITI 219 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 37.7 bits (86), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 15/99 (15%) Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVD-RGNSIIVI 904 +SGG+ QRV LA+ L +Q + +LDEP ++L +L + D R ++++I Sbjct: 130 MSGGQRQRVALARCLIRQ---KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186 Query: 905 EHNLE---VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940 HNLE I T ++ GG+I+ G P+ + Sbjct: 187 SHNLEDSMQIATRFIVI--------AGGQIVYDGDPDRL 217 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 37.4 bits (85), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900 Q +LSGG+ RV LAK L +G + +LDEPT L ++ L + L G + Sbjct: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENFA--GCA 488 Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEI-IASGPPEAIAKEPLSYTGKFL 952 +I+ + + + A IL F +G G + G E K+ LS + + L Sbjct: 489 VIISHDRMFLDRLATHILAF-----EGNGHVEWFEGNFEEYEKDKLSRSSRVL 536 Score = 25.4 bits (54), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899 G + +LSGGE +RV L K L L EPT L IA + L + Sbjct: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLD---EPTNHLDAETIAWMEKYLR---EYSG 204 Query: 900 SIIVIEHNLEVI-KTADWILD 919 +++++ H+ + +WIL+ Sbjct: 205 AVLMVTHDRYFLDNVTNWILE 225 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902 A LSGG+ +R+++A+ L + + +LDEP G+ I+ + ++ L RG I+ Sbjct: 156 APLLSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 Query: 903 VIEHNLEVIKT 913 + +HN+ I T Sbjct: 213 ITDHNVHEILT 223 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%) Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911 QR +A+ L Q + + DEPT+ L + ++L+I+ L + G +++ + H + Sbjct: 159 QRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFA 215 Query: 912 K-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPL-SYTGKFLKSIL 956 + AD ++ G+I+ PE P T FL I+ Sbjct: 216 RQVADRVVFM------DQGQIVEQNSPEEFFNNPQHERTQAFLSQII 256 Score = 28.9 bits (63), Expect = 0.40, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 22/29 (75%) Query: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43 H L++I++ + R + +++ G SGSGKS+L Sbjct: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59 Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%) Query: 507 GESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEE 566 GESQR +A + + + + DEP+ L ++++ + L + G T++ V H+ Sbjct: 156 GESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE-- 211 Query: 567 TMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601 M A + D ++ G+IV + SP + +P Sbjct: 212 -MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%) Query: 796 FKDKSIADVLSMTVDESLDFFAAI--PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQR 853 F ++ + +SM + E L+ A + +H K+ VGL LSGG +R Sbjct: 102 FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAI---VGLPPETANLMPFQLSGGMIKR 158 Query: 854 VKLAKELSKQATGNTLYILDEPTTGLH---YHDIAKLL-NILHTLVDRGNSIIVIEHNL 908 V LA+ L A L LDEPT+GL + KLL + H+L G S+ +I H+L Sbjct: 159 VSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL---GLSVYMITHDL 211 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888 L+ VG+ ++ Q LS G+ +RV LA+ L++++ + I+DEP + + +++ Sbjct: 132 LENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTEREMI 187 Query: 889 NILHTLVDRGNSIIVIEHNLEVI 911 +L +L++ I+V HN+ I Sbjct: 188 FLLKSLLNEDIMILVSTHNINSI 210 Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 21/27 (77%) Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43 L+++++ +P N + + G++G+GKS+L Sbjct: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54 Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%) Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYD-------RI 692 L++V IP TA+ G++G GK STL++A +I K + I++ + Sbjct: 28 LEDVNLFIPENTITALIGLNGAGK-----STLFQAIMGLIPLDKGSISIFNQTVENALKA 82 Query: 693 DGLEYIDKVVSINQS-PI 709 D + YI + SI+ + PI Sbjct: 83 DLIAYIPQTESIDWTFPI 100 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 35.8 bits (81), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897 ++ A+ LSGG+ QRV +A+ L A + ++DEP + L A + ++H L + Sbjct: 143 RLFHDASLLSGGQQQRVCIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRE- 198 Query: 898 GNSIIVIEHNLE 909 +I+++ H+++ Sbjct: 199 SLTIVIVTHSMQ 210 Score = 28.9 bits (63), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 17/61 (27%) Query: 607 KYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF 666 K +S K+S+ EKR ++ N LK IP TA+ G SG GKSTF Sbjct: 6 KMISNKVSVCYGEKRALFDIN------------LK-----IPQNSVTALIGPSGCGKSTF 48 Query: 667 L 667 L Sbjct: 49 L 49 Score = 26.9 bits (58), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 23/37 (62%) Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43 +S+ + L +I++++P+N + + G SG GKS+ Sbjct: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTF 48 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 34.3 bits (77), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898 +G A LS G+ QR+ +A+ + K + + +LDE + L + K+ +L RG Sbjct: 420 LGDGAVHLSTGQIQRIAIARAILKD---SPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475 Query: 899 NSIIVIEHNLEVIKTADWIL 918 + I H L I+ AD + Sbjct: 476 RTTIFASHRLSAIQDADMVF 495 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%) Query: 592 GSPSQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNN-----------L 640 G SQ IA L + + K+ I P R + P+ ++ ++ RS + L Sbjct: 249 GGISQAIASLRRLR-ELIVCKLDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSIL 306 Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAARIIMGSKYNPGIYDRIDGLEYI 698 KNV ++ G A+ G SG GK++ LI Y + GS GI R+ LE I Sbjct: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS----GSVEIEGIDLRLLSLEEI 362 Query: 699 DKVVS-INQSPI 709 + ++ + Q PI Sbjct: 363 RRFIAWVPQHPI 374 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 32.3 bits (72), Expect = 0.035, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML 569 Q+IRL+ I + + ++DEP L LK ++ T++++ HD + Sbjct: 473 QKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530 Query: 570 AADHIVDIGPEAG 582 +D + P G Sbjct: 531 MSDFSLIFHPIQG 543 Score = 30.4 bits (67), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911 Q+++L++ + A + ++DEP L +L + +I++I H+ +I Sbjct: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 Query: 912 KTADWILDFGPEGGDGGG 929 +D+ L F P G G Sbjct: 530 SMSDFSLIFHPIQGSLFG 547 Score = 28.9 bits (63), Expect = 0.46, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 5 KNISIRGAREHNL--QNISIELPRNKLIVMTGVSGSGKSSL 43 KNI R + L QN+S +P ++ G SG GKS+ Sbjct: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 Score = 24.3 bits (51), Expect = 9.1, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF 666 +N++ +IP G I G SG GKS F Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNF 374 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 31.2 bits (69), Expect = 0.085, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%) Query: 68 LGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF--------ARIG 119 L T +KPD+ ID + Q S S+ GT+ ++ ++ + A + Sbjct: 162 LITNEKPDLVIIDSI-------QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214 Query: 120 IPHSPTTGLPIESQTISQMADRLLSFEQGTRM----YLLAPIVRNRKGEYKK-ELAEILK 174 + H G + I M D +L FE GTR Y + V+NR G + + E+ Sbjct: 215 VGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSD 274 Query: 175 KGFQRV 180 KG Q V Sbjct: 275 KGLQEV 280 >gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 307 Score = 25.8 bits (55), Expect = 3.0, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 18/25 (72%) Query: 385 SNLSFRGIIPTLEKRWSEADSSLLQ 409 ++LSF+ II TL + W++ ++LQ Sbjct: 9 NDLSFQNIILTLTQYWAQQGCTILQ 33 >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 25.8 bits (55), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881 I IG+ G V+ +E ++A G T Y+ EP + HY Sbjct: 40 IVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS--HY 82 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 25.0 bits (53), Expect = 5.4, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 18/27 (66%) Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43 LQ++ + + + I + G +GSGKS+L Sbjct: 21 LQDVCLSIKPKERICLVGCNGSGKSTL 47 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.0 bits (53), Expect = 5.7, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 27 NKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVEQIDGLSPTI 86 ++++++ G SGSGKS LA I ++ R + +F K D ID P + Sbjct: 64 SRVVILVGPSGSGKSCLA--NIWSDKSR---------STRFSNIAKSLDSILIDTRKPVL 112 Query: 87 SIEQKNTSHNPRSTVGTITEIHDY 110 + N I IH Y Sbjct: 113 LEDIDLLDFNDTQLFHIINSIHQY 136 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 24 LPRNKLIVMTGVSGSGKSSLA 44 L R+ LI++ G G GK+SLA Sbjct: 216 LQRSDLIIIAGRPGMGKTSLA 236 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 614,986 Number of Sequences: 1233 Number of extensions: 26455 Number of successful extensions: 143 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 56 length of query: 959 length of database: 328,796 effective HSP length: 83 effective length of query: 876 effective length of database: 226,457 effective search space: 198376332 effective search space used: 198376332 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 43 (21.2 bits)