HHsearch alignment for GI: 254780185 and conserved domain: COG0174
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=899.13 Aligned_cols=428 Identities=37% Similarity=0.635 Sum_probs=388.5
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHH----HHHHHHHHCCCCCCCCCHHCCCC-CCCCEEEEEECCCCEE
Q ss_conf 989999999857983999999789982523787787----83055884598456651002468-9988899964110587
Q gi|254780185|r 4 KATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVS----LFNENTLLNGITFDSSSIDGWHS-KHPNLLLIPDIETMHM 78 (458)
Q Consensus 4 ~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~----~f~~~~~~~G~~fd~s~i~g~~~-~~~D~~l~PD~~T~~~ 78 (458)
T Consensus 2 ~~~~~~~~~~~~~v~~v~~~f~D~~G~~r~k~~p~~~~~~~~~-~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~ 80 (443)
T COG0174 2 TKEDVLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLA-QLFEGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVV 80 (443)
T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 1788999987289369999997799976226986655326777-643058676886412467789888699626675276
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEECCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 75689722799852014754485302555323556799873034522-57731330899706777778654776667654
Q gi|254780185|r 79 DPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDT-LLLGITTEFFVFDNVHCTISPIKSGFALESTE 157 (458)
Q Consensus 79 ~Pw~~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~-~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~ 157 (458)
T Consensus 81 ~Pw~~~~ta~v~cdv~~~-~g~p~~~dPR~vlkr~~~~l~~~--G~~~~~~g~E~EFfLfd~~~~~~~~----------- 146 (443)
T COG0174 81 DPWREGPTARVLCDVYDP-DGTPYPRDPRSVLKRALARLKDE--GLAPAVVGPELEFFLFDRDGRDPDG----------- 146 (443)
T ss_pred CCCCCCCCEEEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHC--CCCCCCEECCEEEEEEECCCCCCCC-----------
T ss_conf 777788727999998879-99958988399999999999866--8854302024169996036677666-----------
Q ss_pred CCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 57777775003655455635524446899999999998605411222133562121036555668887769999999999
Q gi|254780185|r 158 FLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVH 237 (458)
Q Consensus 158 ~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik 237 (458)
T Consensus 147 --------~~~~~~g~yf~~~~~~~~~d~~~~i~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk 218 (443)
T COG0174 147 --------GRPADKGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVK 218 (443)
T ss_pred --------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf --------766887764676542227899999999999879982630145058855783378788999899999999999
Q ss_pred HHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCC-CCCCCEECC-CCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHH
Q ss_conf 998744975444121014568601201111114-676312215-556578999999999998864100000667001443
Q gi|254780185|r 238 QVANSYCKIATFMPKPIASHNGSGMYLNMSIHK-GEKAIFTGN-QHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKR 315 (458)
Q Consensus 238 ~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~-~~~n~f~~~-~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkR 315 (458)
T Consensus 219 ~vA~~hG~~aTFMpKP~~g~~GsGmH~H~Sl~~~dg~n~F~d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYkR 298 (443)
T COG0174 219 EVAEKHGLTATFMPKPFFGDNGSGMHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKR 298 (443)
T ss_pred HHHHHHCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999598599947877899977304898776489975204888852579999999999998789867675777510421
Q ss_pred H-CCCCCCCEEEEECCCCCCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-
Q ss_conf 1-888521201011368876401025788-7654124404675321279999999999998788559998665578877-
Q gi|254780185|r 316 L-LTDSQSPTKLTYSTHNHSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLE- 392 (458)
Q Consensus 316 l-~p~~~ap~~~~WG~~NR~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~- 392 (458)
T Consensus 299 l~vp~e~AP~~~~wg~~NRsa~iRIP~~~~~~~~~RiE~R~pdp~aNPYLa~AaiL~agldGI~~ki~p~~p~~~n~y~~ 378 (443)
T COG0174 299 LGVPYEWAPTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDGIENKLEPGEPVDGNLYEL 378 (443)
T ss_pred CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 48985558611100347751579957888777764457647999889899999999999977754799987445643228
Q ss_pred ---HHHCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf ---771320001798999999873989898413378899999999999999999659997899863579
Q gi|254780185|r 393 ---EQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 (458)
Q Consensus 393 ---~~~~~~~LP~~L~eAl~~l~~d~~~~~~~~~lG~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~~ 458 (458)
T Consensus 379 ~~~e~~~-~~LP~sL~eAl~~l~-~~~~--~~~~lge~~~~~yi~~K~~E~~~~~~~v~~wE~~~yl~~ 443 (443)
T COG0174 379 SPEERKE-PTLPASLREALDALE-DSEF--LREALGEDFIDAYIALKRAEWEEFRSRVTPWEFERYLSV 443 (443)
T ss_pred CHHHHCC-CCCCCCHHHHHHHHH-HCHH--HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 9545233-567626999999862-0568--887628499999999999999999725999999988529