HHsearch alignment for GI: 254780185 and conserved domain: COG3968

>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only].
Probab=99.92  E-value=8.9e-24  Score=168.02  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=188.8

Q ss_pred             EEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             25773133089970677777865477666765457777775003655455635524446899999999998605411222
Q gi|254780185|r  125 TLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKY  204 (458)
Q Consensus       125 ~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~  204 (458)
T Consensus       215 ~s~~GaEQEYFlvd~~~~~~RpDLi~-tGRTLFGa~ppkGQEldDHYFG----aipeRV~~FM~Dve~~LyaLGIpaKTr  289 (724)
T COG3968         215 FSNVGAEQEYFLVDKKSYDERPDLIF-TGRTLFGAPPPKGQELDDHYFG----AIPERVSAFMKDVEKELYALGIPAKTR  289 (724)
T ss_pred             CCCCCCCCEEEEECHHHCCCCCCEEE-ECHHHCCCCCCCCCCCCCHHCC----CCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             36778431368861101034856266-2402128999987612200012----447999999988999999808853334


Q ss_pred             CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHC-CCCCCCEECCCCCC
Q ss_conf             13356212103655566888776999999999999874497544412101456860120111111-46763122155565
Q gi|254780185|r  205 HNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIH-KGEKAIFTGNQHDR  283 (458)
Q Consensus       205 h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~-~~~~n~f~~~~~~~  283 (458)
T Consensus       290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~Ph  369 (724)
T COG3968         290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPH  369 (724)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56558775244100115653320799999999998876255888615875675788775645414687756579999987


Q ss_pred             CCHHHHHHHH----HHHHHHHHCCHHCCCCCHHHHHHCCCCCCC-EEE--------------------------------
Q ss_conf             7899999999----999886410000066700144318885212-010--------------------------------
Q gi|254780185|r  284 VSLKGLYYLG----GIIKHAKSLNALTNASTNSYKRLLTDSQSP-TKL--------------------------------  326 (458)
Q Consensus       284 ls~~~~~fia----Gil~h~~al~a~~~PtvNSYkRl~p~~~ap-~~~--------------------------------  326 (458)
T Consensus       370 dN~QFL~Fc~AvIkaVdkY~~Ll-Ra~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg  447 (724)
T COG3968         370 DNKQFLLFCTAVIKAVDKYADLL-RASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLG  447 (724)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCC-CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             56000021588998788879999-9987515775345567-799612676403069999999964877666667632443


Q ss_pred             ---------EECCCCCCCEEECCCCCCCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHHCCC----CCCCC----
Q ss_conf             ---------11368876401025788765412440467532---12799999999999987885599----98665----
Q gi|254780185|r  327 ---------TYSTHNHSASCRIPYENKSDNKSIEIRFPDLS---ANPYLAPAAILMAGLDGIAKKIH----PGKNI----  386 (458)
Q Consensus       327 ---------~WG~~NR~a~iRip~~~~~~~~riE~R~~da~---aNPYL~lAailaAgl~Gi~~~l~----p~~~~----  386 (458)
T Consensus       448 ~~vlP~v~kdAgDRNRTSPFAF------TGNkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe~kl~kg~dld~ai  521 (724)
T COG3968         448 ISVLPAVEKDAGDRNRTSPFAF------TGNKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLEGKLRKGSDLDAAI  521 (724)
T ss_pred             HHHCCCCCCCCCCCCCCCCCEE------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             1205566445565567887303------0661368527865445664578889999999999899887763246578899


Q ss_pred             ----------------CCCCHH--------HHHCCCCCCCCHHHHHHHHHHCHH
Q ss_conf             ----------------578877--------771320001798999999873989
Q gi|254780185|r  387 ----------------DELSLE--------EQNTIPRICISLRESLENLDKDRE  416 (458)
Q Consensus       387 ----------------~~~~~~--------~~~~~~~LP~~L~eAl~~l~~d~~  416 (458)
T Consensus       522 ~~vl~et~k~h~~vvFnGnGYSeeWhkeAekeRGL~Nlr-TT~dA~~~L~~~kn  574 (724)
T COG3968         522 EAVLTETVKDHKKVVFNGNGYSEEWHKEAEKERGLPNLR-TTVDATKALIADKN  574 (724)
T ss_pred             HHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCCHHH-HHHHHHHHHCCHHH
T ss_conf             999999998616687579875489999999853863035-46778887503267