Query gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 458
No_of_seqs 147 out of 2723
Neff 7.4
Searched_HMMs 33803
Date Mon May 23 13:51:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780185.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1f52_A Glutamine synthetase; 100.0 0 0 616.0 20.4 291 102-392 2-300 (301)
2 >2bvc_A Glutamine synthetase 1 100.0 0 0 594.1 20.7 288 105-392 1-301 (302)
3 >3fky_A Glutamine synthetase; 100.0 0 0 532.7 14.0 259 104-389 2-262 (264)
4 >2ojw_A Glutamine synthetase; 100.0 0 0 503.3 10.7 249 103-377 1-255 (256)
5 >2d3a_A Glutamine synthetase; 100.0 0 0 484.1 13.5 246 105-375 1-250 (252)
6 >2j9i_A Glutamate-ammonia liga 100.0 0 0 342.7 11.6 149 241-390 20-168 (168)
7 >2bvc_A Glutamine synthetase 1 99.9 2.6E-24 7.6E-29 171.0 10.4 103 1-108 10-113 (114)
8 >1f52_A Glutamine synthetase; 99.9 2.1E-22 6.3E-27 159.0 11.3 95 4-99 1-96 (98)
9 >2j9i_A Glutamate-ammonia liga 99.9 4.1E-22 1.2E-26 157.2 11.1 93 4-96 1-94 (95)
10 >2j9i_A Glutamate-ammonia liga 99.8 2E-23 5.8E-28 165.5 -2.2 82 173-254 13-95 (95)
11 >2j9i_A Glutamate-ammonia liga 99.2 2.1E-12 6.2E-17 96.7 2.1 59 395-458 3-61 (63)
12 >3fky_A Glutamine synthetase; 98.6 1.9E-07 5.6E-12 65.8 8.0 88 12-102 18-106 (106)
13 >2d3a_A Glutamine synthetase; 98.4 8.5E-07 2.5E-11 61.7 7.7 87 14-103 15-103 (104)
14 >1r8g_A Hypothetical protein Y 98.4 8.3E-06 2.5E-10 55.5 12.7 201 123-379 9-267 (372)
15 >2ojw_A Glutamine synthetase; 98.4 1.1E-06 3.2E-11 61.1 7.1 79 20-101 6-86 (87)
16 >2gwd_A Glutamate cysteine lig 98.3 1.2E-05 3.7E-10 54.4 10.7 159 107-310 15-214 (422)
17 >1va6_A Glutamate--cysteine li 96.6 0.002 5.9E-08 40.7 3.9 181 125-364 3-235 (254)
18 >2d3a_A Glutamine synthetase; 93.4 0.027 7.9E-07 33.6 1.2 54 288-341 163-231 (252)
19 >1zpv_A ACT domain protein; st 45.8 12 0.00037 17.0 2.0 68 186-255 18-85 (91)
20 >1x3l_A Hypothetical protein P 42.8 13 0.00037 17.0 1.7 100 214-368 8-108 (196)
21 >1vjz_A Endoglucanase; TM1752, 41.0 22 0.00066 15.4 4.7 65 183-247 75-140 (341)
22 >1ufa_A TT1467 protein; struct 36.8 7.6 0.00023 18.3 -0.2 28 7-37 29-56 (109)
23 >3gyg_A NTD biosynthesis opero 30.6 33 0.00096 14.4 5.1 77 185-264 4-82 (88)
24 >2qlv_A Carbon catabolite dere 29.8 31 0.00093 14.5 2.0 32 176-207 12-43 (134)
25 >2iut_A DNA translocase FTSK; 28.7 35 0.001 14.2 4.2 40 181-220 89-130 (182)
26 >2qrd_A SNF1-like protein kina 27.8 36 0.0011 14.1 2.0 32 176-207 16-47 (137)
27 >1u8s_A Glycine cleavage syste 25.3 41 0.0012 13.8 4.5 65 185-252 18-82 (86)
28 >1ni3_A YCHF GTPase, YCHF GTP- 23.3 35 0.001 14.2 1.3 31 6-36 21-51 (149)
29 >3lou_A Formyltetrahydrofolate 22.7 45 0.0013 13.5 2.5 66 186-251 23-91 (93)
30 >1eej_A Thiol:disulfide interc 20.2 51 0.0015 13.2 1.7 30 189-218 4-33 (49)
No 1
>>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:99-399)
Probab=100.00 E-value=0 Score=615.98 Aligned_cols=291 Identities=43% Similarity=0.708 Sum_probs=262.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC------C-CCCCCEECCCCCCC
Q ss_conf 3025553235567998730345225773133089970677777865477666765457------7-77775003655455
Q gi|254780185|r 102 YNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFL------Q-NGNNKGYDSHAKSS 174 (458)
Q Consensus 102 ~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~------~-~~~~~g~~~~~~~~ 174 (458)
|+.|||++|||+++++++.++++++++|+|+|||||++......+.....+....... . .....+......++
T Consensus 2 ~~~~pR~vLkr~~~~l~~~G~~~~~~~g~E~EF~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (301)
T 1f52_A 2 YDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 81 (301)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88896999999999999819963134345347999744434556666633446411135678766678878765766530
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 635524446899999999998605411222-1335621210365556688877699999999999987449754441210
Q gi|254780185|r 175 YTLPPQDKLHDMRSEIVSALNNIGVQITKY-HNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKP 253 (458)
Q Consensus 175 y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~-h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP 253 (458)
|++.+.+...++++++++.|+++||+|+++ |+|+||||+||++.|+++|++||+++++|++||+||.+||+.|||||||
T Consensus 82 ~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~h~E~~~gQ~Ei~~~~~~~l~aAD~~~~~r~~ik~vA~~~G~~atFmpKP 161 (301)
T 1f52_A 82 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKP 161 (301)
T ss_dssp SBCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 26774200789999999999976997177550223678779950678788889999999999999999849878971666
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 14568601201111114676312215556578999999999998864100000667001443188852120101136887
Q gi|254780185|r 254 IASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNH 333 (458)
Q Consensus 254 ~~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR 333 (458)
+.+.+|||||+|+|||++++|+|.++++.+||..+++||||||+|++++++|++||+||||||+|++|||++++||.+||
T Consensus 162 ~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGil~h~~~l~a~~~pt~nSY~Rl~~~~~ap~~~~wG~~NR 241 (301)
T 1f52_A 162 MFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNR 241 (301)
T ss_dssp STTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCT
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEECCCCC
T ss_conf 79999661479972456998667777765522999999999999999977643799863321579865777531236677
Q ss_pred CCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 64010257887654124404675321279999999999998788559998665578877
Q gi|254780185|r 334 SASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLE 392 (458)
Q Consensus 334 ~a~iRip~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~ 392 (458)
+++||||..+.++++|||+|++|++|||||++||+|+||+|||+++++||+|++++.+|
T Consensus 242 ~a~iRvp~~~~~~~~r~E~R~~da~aNPYl~lAail~agl~Gi~~~l~~~~~~~~~~~e 300 (301)
T 1f52_A 242 SASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYD 300 (301)
T ss_dssp TEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSS
T ss_pred CCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 53088303689877667863788887899999999999999998479999888786244
No 2
>>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416)
Probab=100.00 E-value=0 Score=594.10 Aligned_cols=288 Identities=38% Similarity=0.563 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC----------CCCCCCEECCCCCCC
Q ss_conf 5553235567998730345225773133089970677777865477666765457----------777775003655455
Q gi|254780185|r 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFL----------QNGNNKGYDSHAKSS 174 (458)
Q Consensus 105 ~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~ 174 (458)
|||++||+++++++++++++.+++|+|+|||||++......+...+....+.... ...........+.++
T Consensus 1 DPR~~Lk~~~~~l~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (302)
T 2bvc_A 1 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGY 80 (302)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCCS
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72016999999999749761453122012552133333555578766654223455678743467899878665557776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 63552444689999999999860541122213-35621210365556688877699999999999987449754441210
Q gi|254780185|r 175 YTLPPQDKLHDMRSEIVSALNNIGVQITKYHN-QINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKP 253 (458)
Q Consensus 175 y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~-E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP 253 (458)
|++.+.+...+|+++|+++|+++||+|+++|| |.+|||+||++.|+++++|||+++++|++||+||.+||++|||||||
T Consensus 81 ~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~hee~~~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~G~~atFmpKP 160 (302)
T 2bvc_A 81 FPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKP 160 (302)
T ss_dssp CBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 54540356799999999778754971465203455563344256534005777488999999999999639647786420
Q ss_pred CCCCCCCHHHHHHHHCCC-CCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 145686012011111146-7631221555657899999999999886410000066700144318885212010113688
Q gi|254780185|r 254 IASHNGSGMYLNMSIHKG-EKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHN 332 (458)
Q Consensus 254 ~~~~~GsG~Hih~Sl~~~-~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~N 332 (458)
+.+.+|||||+|+|||++ ++|+|++++++++|+++++||||||+|+|++++|++||+||||||+|++|||++++||.+|
T Consensus 161 ~~~~~Gsg~H~h~SL~~~~~~~~~~~~~~~~ls~~~~~fiaGll~h~~~l~al~aptvnSY~Rl~~~~~ap~~~~WG~~N 240 (302)
T 2bvc_A 161 LFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRN 240 (302)
T ss_dssp STTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEETC
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 68988766007888641798864433443333799999999998616333111214656556689997572466303665
Q ss_pred CCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 76401025788-7654124404675321279999999999998788559998665578877
Q gi|254780185|r 333 HSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLE 392 (458)
Q Consensus 333 R~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~ 392 (458)
|+++||||..+ .++++|||+|++|++|||||++||+|+||++||+++++||+|++++.++
T Consensus 241 R~~~iRv~~~~~~~~~~r~E~R~~da~aNPYlalAailaAgl~Gi~~~~~~~~p~~~~~~~ 301 (302)
T 2bvc_A 241 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYE 301 (302)
T ss_dssp TTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGG
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 4434422333678766168835899443588999999999999998089999967786012
No 3
>>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370)
Probab=100.00 E-value=0 Score=532.75 Aligned_cols=259 Identities=18% Similarity=0.165 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHH
Q ss_conf 25553235567998730345225773133089970677777865477666765457777775003655455635524446
Q gi|254780185|r 104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKL 183 (458)
Q Consensus 104 ~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~ 183 (458)
.|||++|||++++++ |+++++|+|+|||||++............ ..+..+..+|+....+..
T Consensus 2 ~~pR~~L~~~~~~~~----g~~~~~g~E~EF~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 63 (264)
T 3fky_A 2 FNHRHEAAKLFAAHK----DEEIWFGLEQEYTLFDMYDDVYGWPKGGY--------------PAPQGPYYCGVGAGKVYA 63 (264)
T ss_dssp TCCHHHHHHHHHHTG----GGCCEEEEEEEEEEECTTSSBTTCCTTSB--------------CSCSSSCTTCCSTTTCSC
T ss_pred CHHHHHHHHHHHHHH----HCCCEECCCEEEEEEECCCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCHH
T ss_conf 015999999998787----44746714413898977887545777676--------------676532012357775103
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-CHH
Q ss_conf 8999999999986054112221335621210365556688877699999999999987449754441210145686-012
Q gi|254780185|r 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNG-SGM 262 (458)
Q Consensus 184 ~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~~G-sG~ 262 (458)
+++++++++.|+.+||+++++|+|+|||||||++.|+++|+|||+++++|++||+||.+||+.|||||||+.+..| ||+
T Consensus 64 ~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aaD~~~~~r~~ik~iA~~~g~~atFmpKP~~~~~~~~~~ 143 (264)
T 3fky_A 64 RDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGC 143 (264)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSSSSCCCBE
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 57999999998742454201102345541444000010010340889999999999998198078754134576678761
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCCEEECCCC
Q ss_conf 01111114676312215556578999999999998864100000667001443188852120101136887640102578
Q gi|254780185|r 263 YLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYE 342 (458)
Q Consensus 263 Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~ 342 (458)
|.|+|++++++ ..++..+++||||||+|++++++|++||+||||||.|++|||++++||.+||+++||||..
T Consensus 144 h~~~s~~~~~~--------~~~~~~~~~~iaGll~h~~~~~~~~~pt~nsY~Rl~~~~~ap~~~~wg~~NR~~~iRi~~~ 215 (264)
T 3fky_A 144 HANVSTKEMRQ--------PGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRS 215 (264)
T ss_dssp EEEEECHHHHS--------SSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHH
T ss_pred EEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCEEEEECCC
T ss_conf 32044000458--------8857999999987556567664004656640532666576752355526788567996887
Q ss_pred C-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8-7654124404675321279999999999998788559998665578
Q gi|254780185|r 343 N-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDEL 389 (458)
Q Consensus 343 ~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~ 389 (458)
. .++++|||+|++|++|||||++||+|+||+|||+++++|+ |++++
T Consensus 216 ~~~~~~~r~E~R~~d~~aNPYl~~aa~l~agl~Gi~~~~~~~-p~~~~ 262 (264)
T 3fky_A 216 VAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDNADMTK-EFERE 262 (264)
T ss_dssp HHHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTTBCTTT-CCC--
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCC
T ss_conf 788876089976877777889999999999987875489998-56777
No 4
>>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:129-384)
Probab=100.00 E-value=0 Score=503.33 Aligned_cols=249 Identities=19% Similarity=0.199 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHH
Q ss_conf 02555323556799873034522577313308997067777786547766676545777777500365545563552444
Q gi|254780185|r 103 NRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDK 182 (458)
Q Consensus 103 ~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~ 182 (458)
+.|||++|||++++++. +| +.+|+|+|||||+++......... ....+..+..+|++...+.
T Consensus 1 e~~pR~~Lkr~~~~~~~--~g--~~~g~E~EF~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 62 (256)
T 2ojw_A 1 ETNLRHTCKRIMDMVSN--QH--PWFGMEQEYTLMGTDGHPFGWPSN--------------GFPGPQGPYYCGVGADRAY 62 (256)
T ss_dssp TTCCHHHHHHHHHHTGG--GC--CEEEEEEEEEEEC-CCSBTTCCTT--------------SCCSCSSSCTTCCSTTTCC
T ss_pred CCCHHHHHHHHHHHHHH--CC--CEEEEEEEEEEEECCCCCCCCCCC--------------CCCCCCCCCCCCCCCHHHH
T ss_conf 54699999999987541--27--433000047998535666677667--------------8888776644466520246
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCH
Q ss_conf 689999999999860541122213356212103655566888776999999999999874497544412101-4568601
Q gi|254780185|r 183 LHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPI-ASHNGSG 261 (458)
Q Consensus 183 ~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~-~~~~GsG 261 (458)
.++++++|++.|+++||+++++|+|+|||||||++.|+++|+|||+++++|++||+||.+||+.|||||||+ .+.+|||
T Consensus 63 ~~~~~~~i~~~l~~~Gi~ie~~h~E~g~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~gl~atFmpKP~~~~~~gsg 142 (256)
T 2ojw_A 63 GRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAG 142 (256)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCSSSCCCB
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 58999999998753053110231145775068700233133456799999999999999849878862135678766674
Q ss_pred HHHHHHHCCC-CCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHH-CCCCCHHHHHHCCCCCCCEEEEE--CCCCCCCEE
Q ss_conf 2011111146-7631221555657899999999999886410000-06670014431888521201011--368876401
Q gi|254780185|r 262 MYLNMSIHKG-EKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNAL-TNASTNSYKRLLTDSQSPTKLTY--STHNHSASC 337 (458)
Q Consensus 262 ~Hih~Sl~~~-~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~-~~PtvNSYkRl~p~~~ap~~~~W--G~~NR~a~i 337 (458)
||+|+|||+. ++|+|+ ....+|++|+++|+.+++++ ++||+||||||+|++|||+.++| |.+||+++|
T Consensus 143 ~H~h~Sl~~~~~~~~~~--------~~~~~~~~g~~~h~~~~~~~~~~ptvnsY~Rl~~~~~ap~~~~~s~G~~NR~~~i 214 (256)
T 2ojw_A 143 CHTNFSTKAMREENGLK--------YIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASI 214 (256)
T ss_dssp EEEEEECHHHHSTTTHH--------HHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSE
T ss_pred CEEECCCCCCCCCCCCC--------CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 04431233446778865--------5521344410659999997605776003654289865857563274168887668
Q ss_pred ECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 025788-7654124404675321279999999999998788
Q gi|254780185|r 338 RIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIA 377 (458)
Q Consensus 338 Rip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~ 377 (458)
|||... .++++|||+|++|++|||||++||+|+||+|||+
T Consensus 215 Ri~~~~~~~~~~r~E~R~~d~~aNPYl~laail~agl~Gi~ 255 (256)
T 2ojw_A 215 RIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 255 (256)
T ss_dssp EECHHHHHHTCSCEEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred EECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 96876788886189978977887899999999999756878
No 5
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356)
Probab=100.00 E-value=0 Score=484.15 Aligned_cols=246 Identities=16% Similarity=0.156 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHH
Q ss_conf 55532355679987303452257731330899706777778654776667654577777750036554556355244468
Q gi|254780185|r 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLH 184 (458)
Q Consensus 105 ~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~ 184 (458)
|||++|||+++++++ .|+++++|+|+|||||+++.....+... ...+.......+|++.+.+...
T Consensus 1 DPR~~L~~~~~~~~~--~G~~~~~g~E~EF~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 65 (252)
T 2d3a_A 1 NKRYSAAKIFSSPEV--AAEEPWYGIEQEYTLLQKDTNWPLGWPI-------------GGFPGPQGPYYCGIGAEKSFGR 65 (252)
T ss_dssp CCHHHHHHHHHSHHH--HHHCCEEEEEEEEEEEETTTCCBTTSCT-------------TSBCSCSSSCTTCCSTTTCCCH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEECCCEEEEEEECCCCCCCCCCC-------------CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 627889999999874--6980676141389985135678887654-------------5787544675455431001336
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCHHH
Q ss_conf 9999999999860541122213356212103655566888776999999999999874497544412101456-860120
Q gi|254780185|r 185 DMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASH-NGSGMY 263 (458)
Q Consensus 185 ~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~-~GsG~H 263 (458)
++++++++.|+++||+|+++|+|+|||||||++.|++++++||+++++|++||+||.+||+.|||||||+.+. .|||+|
T Consensus 66 ~~~~~i~~~l~~~Gi~v~~~~~E~g~gQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hgl~atFmpKP~~~~~~~~~~h 145 (252)
T 2d3a_A 66 DIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAH 145 (252)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCSSSCCCBEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEE
T ss_conf 78999998776316453422236688637998621410012148999999999999982988996204555777777027
Q ss_pred HHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCC--CCCCEEEEECCCCCCCEEECCC
Q ss_conf 11111146763122155565789999999999988641000006670014431888--5212010113688764010257
Q gi|254780185|r 264 LNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTD--SQSPTKLTYSTHNHSASCRIPY 341 (458)
Q Consensus 264 ih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~--~~ap~~~~WG~~NR~a~iRip~ 341 (458)
+|+|+|+.+++. ....++++||+.|+++++++++|++|||+||+++ +|||+++|||.+||+++||||.
T Consensus 146 ~h~s~~~~~~~~----------~~~~~~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~ 215 (252)
T 2d3a_A 146 TNYSTESMRKEG----------GYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGR 215 (252)
T ss_dssp EEEECTTTSSTT----------HHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCH
T ss_pred EEECCCCCCCCC----------CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECC
T ss_conf 640121356542----------2355899999988867888722578606654698657887732772467877798577
Q ss_pred CC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88-76541244046753212799999999999987
Q gi|254780185|r 342 EN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDG 375 (458)
Q Consensus 342 ~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~G 375 (458)
.+ +++++|||+|++|++|||||++|++|+||||-
T Consensus 216 ~~~~~~~~r~E~R~~d~~aNPYl~laa~laagLdp 250 (252)
T 2d3a_A 216 ETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVW 250 (252)
T ss_dssp HHHHTTCCCEEECCCBTTCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 77878762899798778778999999999975648
No 6
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358)
Probab=100.00 E-value=0 Score=342.75 Aligned_cols=149 Identities=20% Similarity=0.284 Sum_probs=140.6
Q ss_pred HHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCC
Q ss_conf 74497544412101456860120111111467631221555657899999999999886410000066700144318885
Q gi|254780185|r 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDS 320 (458)
Q Consensus 241 ~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~ 320 (458)
...|+...|.+. |.+++|||||+|+|||++++|+|.++++.+||+.+++||||||+|++++++|++||+||||||+|++
T Consensus 20 ~~~~~~~~~~~~-~~~~~GSG~H~H~SL~~~g~N~f~~~~~~~lS~~~~~fiaGiL~h~~~l~a~~aPtvnSY~Rl~p~~ 98 (168)
T 2j9i_A 20 AAAGLLSAFIAD-FAAAAGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAAAAGA 98 (168)
T ss_dssp SCSEECCEECCC-CTTSCCCBCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTSSST
T ss_pred CCCEEEEEEEEE-ECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 983687631678-8212334427999534899876689997543199999858866212321111111111111111111
Q ss_pred CCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2120101136887640102578876541244046753212799999999999987885599986655788
Q gi|254780185|r 321 QSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELS 390 (458)
Q Consensus 321 ~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~ 390 (458)
|||+++|||.+||+++||||....++++|||+|++|+++||||++|++|+||+|||+++++|++|+++++
T Consensus 99 ~AP~~vsWG~~NRsaaiRIp~~~~~~~~riE~R~~da~aNPYL~lAail~Agl~GI~~~l~~~~p~~gda 168 (168)
T 2j9i_A 99 AAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGIQSAGAAAGAAAADA 168 (168)
T ss_dssp TCCCEEEEESSCTTEEEEEECCSSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHHHHTCCCCSCBCSSS
T ss_pred CCCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 1101405437665279998502477764367437994522799999999999999870899989767775
No 7
>>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114)
Probab=99.91 E-value=2.6e-24 Score=171.00 Aligned_cols=103 Identities=33% Similarity=0.627 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCC-CCCCCCEEEEEECCCCEEC
Q ss_conf 987989999999857983999999789982523787787830558845984566510024-6899888999641105877
Q gi|254780185|r 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPNLLLIPDIETMHMD 79 (458)
Q Consensus 1 m~~~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~-~~~~~D~~l~PD~~T~~~~ 79 (458)
|..+.++++++|++++|+||+++|+|++|++|||.+|+++|.+..+.+|++|++|++.++ ..+++|++++||++|++++
T Consensus 10 ~~~~~~~i~~~l~~~~I~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~g~~f~~s~i~g~~~~~~~D~~l~PD~~T~~~~ 89 (114)
T 2bvc_A 10 TEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARID 89 (114)
T ss_dssp --CCHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCSHHHHHTCEEEETTSSTTSCCGGGCEEEEEECGGGCEEC
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCEEC
T ss_conf 66899999999987898299999999999678999989998899997899047757124667887878999834632889
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 56897227998520147544853025553
Q gi|254780185|r 80 PFYAQSTVAFICNVYDPITLQPYNRDPRY 108 (458)
Q Consensus 80 Pw~~~~~~~v~~d~~~~~~g~P~~~~PR~ 108 (458)
||.++++++|+||+|+ |+..|||+
T Consensus 90 Pw~~~~~a~v~~d~~~-----p~~~~PR~ 113 (114)
T 2bvc_A 90 PFRAAKTLNINFFVHD-----PFTLEPYS 113 (114)
T ss_dssp SSCSSCEEEEEEEEEC-----TTTCCBCT
T ss_pred CCCCCCEEEEEEEEEC-----CCCCCCCC
T ss_conf 7479952899999742-----88888066
No 8
>>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:1-98)
Probab=99.88 E-value=2.1e-22 Score=159.01 Aligned_cols=95 Identities=36% Similarity=0.720 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCC-CCCCCCEEEEEECCCCEECCCC
Q ss_conf 989999999857983999999789982523787787830558845984566510024-6899888999641105877568
Q gi|254780185|r 4 KATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPNLLLIPDIETMHMDPFY 82 (458)
Q Consensus 4 ~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~-~~~~~D~~l~PD~~T~~~~Pw~ 82 (458)
++++|+++|++++|+||+++|+|++|++|+|.+|+++|.++++.+|++|+++++.++ ..+++|++++||++|++++||.
T Consensus 1 t~~~i~~~l~~~~i~~V~~~~~Dl~G~~r~k~~p~~~~~~~~~~~g~~f~~ssi~g~~~~~~~D~~~~PD~~T~~~~Pw~ 80 (98)
T 1f52_A 1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFF 80 (98)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEEEGGGCCHHHHHHCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSC
T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCC
T ss_conf 98999999998898499999998999878999849997799985897114654356777987888999757822899868
Q ss_pred CCCEEEEEEEECCCCCC
Q ss_conf 97227998520147544
Q gi|254780185|r 83 AQSTVAFICNVYDPITL 99 (458)
Q Consensus 83 ~~~~~~v~~d~~~~~~g 99 (458)
++++++|+||+|++ +|
T Consensus 81 ~~~~a~V~~d~~~~-dG 96 (98)
T 1f52_A 81 ADSTLIIRCDILEP-GT 96 (98)
T ss_dssp SSCEEEEEEEEECT-TT
T ss_pred CCCEEEEEEEEEEC-CC
T ss_conf 89818999999868-99
No 9
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:1-95)
Probab=99.88 E-value=4.1e-22 Score=157.25 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCCC-CCCCCEEEEEECCCCEECCCC
Q ss_conf 9899999998579839999997899825237877878305588459845665100246-899888999641105877568
Q gi|254780185|r 4 KATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWH-SKHPNLLLIPDIETMHMDPFY 82 (458)
Q Consensus 4 ~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~~-~~~~D~~l~PD~~T~~~~Pw~ 82 (458)
++++|+++|++++|++|++.|+|++|++|||.+|+++|.+..+.+|+.||+|++.||. .+++|++++||++|++++||.
T Consensus 1 t~~~v~~~l~~~~i~~V~~~~~Di~G~~Rgk~i~~~~~~~~~~~~g~~~d~s~i~g~~~~~~~D~~~~Pd~~T~~~~Pw~ 80 (95)
T 2j9i_A 1 SAEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAA 80 (95)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCCTTHHHHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTS
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 98999999997899699999798999846899869999988746977036664367677888888999878987433333
Q ss_pred CCCEEEEEEEECCC
Q ss_conf 97227998520147
Q gi|254780185|r 83 AQSTVAFICNVYDP 96 (458)
Q Consensus 83 ~~~~~~v~~d~~~~ 96 (458)
++++++|+||+|++
T Consensus 81 ~~~~a~vl~d~~dp 94 (95)
T 2j9i_A 81 AAATAAVICDGGAA 94 (95)
T ss_dssp SSSEEEEEEEEESS
T ss_pred CCCCEEEEECCCCC
T ss_conf 44322689679997
No 10
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:128-222)
Probab=99.85 E-value=2e-23 Score=165.50 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=74.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 556355244468999999999986054112221335621210365556-6888776999999999999874497544412
Q gi|254780185|r 173 SSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSE-SLLHASDNLQKYKYSVHQVANSYCKIATFMP 251 (458)
Q Consensus 173 ~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~-~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmp 251 (458)
++|......+..+++.+++++|.++||+++++|+|+|||||||++.|. ++|++||+++++|++||+||++||+.|||||
T Consensus 13 ~~y~~~~~~~~~~~l~~~~~~l~~~Gi~ve~~~~E~g~gQ~Ei~~~~~~~~l~aAD~~~~~r~~vk~vA~~~Gl~aTFmp 92 (95)
T 2j9i_A 13 TISFPASTTAAAADQPQEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAA 92 (95)
T ss_dssp SCEEEECCCTTCTTGGGSCCTTCCCSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88888773034454799999888558763120476634211112233016778889999999999999998699643332
Q ss_pred EEC
Q ss_conf 101
Q gi|254780185|r 252 KPI 254 (458)
Q Consensus 252 KP~ 254 (458)
||.
T Consensus 93 KPs 95 (95)
T 2j9i_A 93 AAA 95 (95)
T ss_dssp TSS
T ss_pred CCC
T ss_conf 111
No 11
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:359-421)
Probab=99.24 E-value=2.1e-12 Score=96.66 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=52.2
Q ss_pred HCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 1320001798999999873989898413378899999999999999999659997899863579
Q gi|254780185|r 395 NTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 (458)
Q Consensus 395 ~~~~~LP~~L~eAl~~l~~d~~~~~~~~~lG~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~~ 458 (458)
.+++.||.||++||++|++|.++ ++++||++|++.|+++|++||++|- |+||+++||++
T Consensus 3 ~~i~~LP~sL~eAl~al~~d~e~--l~~~lg~~~i~~y~~~K~~E~~~~v---t~wE~~~yl~~ 61 (63)
T 2j9i_A 3 AAPSEIPGKMEDALAALEQDAEC--LKAGLGEAFIRAAVAAAKYELENEE---TDAEGNKFLEY 61 (63)
T ss_dssp SSCCCCCSSHHHHHHHHTTCCSS--SSCSCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCHHH--HHHHCCHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_conf 67000278999999999838499--9986699999999999999999864---84269999885
No 12
>>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:1-106)
Probab=98.61 E-value=1.9e-07 Score=65.76 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=68.3
Q ss_pred HHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHH-HCCCCCCCCCHHCCCCCCCCEEEEEECCCCEECCCCCCCEEEEE
Q ss_conf 98579839999997899825237877878305588-45984566510024689988899964110587756897227998
Q gi|254780185|r 12 IAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTL-LNGITFDSSSIDGWHSKHPNLLLIPDIETMHMDPFYAQSTVAFI 90 (458)
Q Consensus 12 l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~-~~G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~v~ 90 (458)
|.+.+--.+..+|+|-.|.+|+|.-......++.- ..-+.|||||.......++|++|+|. .++.+||+..+...|+
T Consensus 18 L~q~~kv~aeYIWIDGtg~lRsKtrtl~~~p~~~~dlP~WnfDGSST~QA~G~nSd~~L~Pv--ai~~DPfr~g~n~LVl 95 (106)
T 3fky_A 18 LDQRGRIIAEYVWIDGTGNLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPV--AYYPDPFRRGDNIVVL 95 (106)
T ss_dssp ---CCCEEEEEEEECSSSCEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEE--EEEECTTTCTTCEEEE
T ss_pred CCCCCEEEEEEEEECCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEC--EEECCCCCCCCCEEEE
T ss_conf 67578079999997898887756466457889964598231578757874068850899827--1867999899974899
Q ss_pred EEECCCCCCCCC
Q ss_conf 520147544853
Q gi|254780185|r 91 CNVYDPITLQPY 102 (458)
Q Consensus 91 ~d~~~~~~g~P~ 102 (458)
|++|.+ +|+|.
T Consensus 96 ce~~~~-dg~P~ 106 (106)
T 3fky_A 96 AACYNN-DGTPN 106 (106)
T ss_dssp EEEECT-TSSBC
T ss_pred EEEECC-CCCCC
T ss_conf 642025-77531
No 13
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:1-104)
Probab=98.44 E-value=8.5e-07 Score=61.70 Aligned_cols=87 Identities=17% Similarity=0.328 Sum_probs=68.3
Q ss_pred HCCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHH-HCCCCCCCCCHHCCCCCCCCEEEEEECCCCEECCCCCCCEEEEEE
Q ss_conf 5798399999978998-25237877878305588-459845665100246899888999641105877568972279985
Q gi|254780185|r 14 QEKVKFIDLRFTDLQG-KFRHISMNVSLFNENTL-LNGITFDSSSIDGWHSKHPNLLLIPDIETMHMDPFYAQSTVAFIC 91 (458)
Q Consensus 14 ~~~I~~V~~~~~Dl~G-~~R~k~ip~~~f~~~~~-~~G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~v~~ 91 (458)
+.+.-.+..+|+|-.| .+|+|.-......++.- ..-+.|||||.......++|++|+|. .++.+|++..+...|+|
T Consensus 15 ~~~kv~aeYIWiDG~g~~lRsKtrtl~~~p~~~~dlP~WnfDGSST~QA~G~~Sd~~L~Pv--a~~~DPfr~g~n~LVlc 92 (104)
T 2d3a_A 15 TTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ--AIFKDPFRRGNNILVMC 92 (104)
T ss_dssp TCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEE--EEEECTTTCTTCEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE--EEEECCCCCCCCEEEEE
T ss_conf 6777999999946899875542388156889975698734266411586078777999830--98334456799669998
Q ss_pred EECCCCCCCCCH
Q ss_conf 201475448530
Q gi|254780185|r 92 NVYDPITLQPYN 103 (458)
Q Consensus 92 d~~~~~~g~P~~ 103 (458)
++|.+ +|+|.+
T Consensus 93 e~~~~-dg~P~~ 103 (104)
T 2d3a_A 93 DCYTP-AGEPIP 103 (104)
T ss_dssp EEECT-TSCBCT
T ss_pred EEECC-CCCCCC
T ss_conf 85237-886224
No 14
>>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} (A:)
Probab=98.44 E-value=8.3e-06 Score=55.52 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 5225773133089970677777865477666765457777775003655455635524446899999999998605--41
Q gi|254780185|r 123 GDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIG--VQ 200 (458)
Q Consensus 123 G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~G--i~ 200 (458)
+-...+|+|.|+++++.......+. .-..+..+| ..
T Consensus 9 ~~~~~~GiE~E~~~Vd~~~~~~~~~------------------------------------------~~~ll~~l~~~~~ 46 (372)
T 1r8g_A 9 SEPFTLGIELEXQVVNPPGYDLSQD------------------------------------------SSXLIDAVKNKIT 46 (372)
T ss_dssp CCTTCEEEEEEEEEEETTTTEECSC------------------------------------------CHHHHTTTSSSCS
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCC------------------------------------------HHHHHHHHHCCCC
T ss_conf 9998348887663267998776775------------------------------------------6999997323246
Q ss_pred CCCCCCCCCCHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEE---EEE-----------EEC-----------
Q ss_conf 12221335621210365556-6888776999999999999874497544---412-----------101-----------
Q gi|254780185|r 201 ITKYHNQINDAQHSFGLQSE-SLLHASDNLQKYKYSVHQVANSYCKIAT---FMP-----------KPI----------- 254 (458)
Q Consensus 201 ie~~h~E~gpGQ~Ei~~~~~-~~l~aAD~~~~~k~~ik~iA~~~G~~AT---Fmp-----------KP~----------- 254 (458)
-..+..|.+..|+|++..|. +.-.+.+.+...+..+.+++.++|+... +.| ||.
T Consensus 47 ~~~i~~E~~~~~iEl~t~p~~~~~~~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~rY~~~~~~~~~~ 126 (372)
T 1r8g_A 47 AGEVKHDITESXLELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYL 126 (372)
T ss_dssp SSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGG
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf 88611037773699748787999999999999999999987651661243578978983213467607899999860528
Q ss_pred -CCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCC---------HHHHHHCCCCCCCE
Q ss_conf -45686012011111146763122155565789999999999988641000006670---------01443188852120
Q gi|254780185|r 255 -ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST---------NSYKRLLTDSQSPT 324 (458)
Q Consensus 255 -~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~p~~~ap~ 324 (458)
....-+|+|||+|+-+. +..-.-+..+..+.|.+.||++.+. -|||-..-+.+-..
T Consensus 127 ~~~~~~~g~hvn~~~~~~--------------~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~S~R~~~~~~~~~~ 192 (372)
T 1r8g_A 127 IQQATVFGQHVHVGCASG--------------DDAIYLLHGLSRFVPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDN 192 (372)
T ss_dssp GCSCCBCEEEEEEECSSH--------------HHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTC
T ss_pred HHHHHHCCCEEECCCCCH--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 877400152475588999--------------999999999999989999986389000599885431057887218676
Q ss_pred EEEECCCCCCC------------EEE------CCCCCCCCCCEEEECCCCCCCCH--HHHHHHHHHHHHHHHHHC
Q ss_conf 10113688764------------010------25788765412440467532127--999999999999878855
Q gi|254780185|r 325 KLTYSTHNHSA------------SCR------IPYENKSDNKSIEIRFPDLSANP--YLAPAAILMAGLDGIAKK 379 (458)
Q Consensus 325 ~~~WG~~NR~a------------~iR------ip~~~~~~~~riE~R~~da~aNP--YL~lAailaAgl~Gi~~~ 379 (458)
...+-+++... .+. .+.-..+...+||+|+.|....+ +.+.++.+.+-+..+-..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~~iE~R~~D~~p~~~~~~~~~af~~~l~~~~~~~ 267 (372)
T 1r8g_A 193 GPXPWVSNWQQFEALFRCLSYTTXIDSIKDLHWDIRPSPHFGTVEVRVXDTPLTLSHAVNXAGLIQATAHWLLTE 267 (372)
T ss_dssp SSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887545663778999998752460113554122057776666453346789998899999999999999999871
No 15
>>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:42-128)
Probab=98.39 E-value=1.1e-06 Score=61.08 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=63.5
Q ss_pred EEEEEECCCC-CEEEEEEEHHHHHHHHH-HCCCCCCCCCHHCCCCCCCCEEEEEECCCCEECCCCCCCEEEEEEEECCCC
Q ss_conf 9999978998-25237877878305588-459845665100246899888999641105877568972279985201475
Q gi|254780185|r 20 IDLRFTDLQG-KFRHISMNVSLFNENTL-LNGITFDSSSIDGWHSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPI 97 (458)
Q Consensus 20 V~~~~~Dl~G-~~R~k~ip~~~f~~~~~-~~G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~v~~d~~~~~ 97 (458)
+..+|+|-.| .+|+|.-......++.- ..-..|||||.......++|++|+|. .++.+|++..+...|+|++|.+
T Consensus 6 aeYIWiDG~g~~lRsKtrtl~~~p~~~~dlP~WnfDGSST~QA~G~~Sd~~L~Pv--ai~~DPfR~g~niLVlCe~~~~- 82 (87)
T 2ojw_A 6 AMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPA--AMFRDPFRKDPNKLVLCEVFKY- 82 (87)
T ss_dssp EEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEE--EEEECTTTCTTCEEEEEEEECT-
T ss_pred EEEEEECCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECC--EECCCCCCCCCCEEEEEEEECC-
T ss_conf 9999855899886666246147888876797715666645787678825999678--0214899999978999950016-
Q ss_pred CCCC
Q ss_conf 4485
Q gi|254780185|r 98 TLQP 101 (458)
Q Consensus 98 ~g~P 101 (458)
+|+|
T Consensus 83 dg~P 86 (87)
T 2ojw_A 83 NRRP 86 (87)
T ss_dssp TSCB
T ss_pred CCCC
T ss_conf 8862
No 16
>>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422)
Probab=98.29 E-value=1.2e-05 Score=54.44 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHCCC-CCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHH
Q ss_conf 5323556799873034-522577313308997067777786547766676545777777500365545563552444689
Q gi|254780185|r 107 RYTAQKAIDYLQTTDI-GDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHD 185 (458)
Q Consensus 107 R~~Lk~~~~~l~~~~~-G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~ 185 (458)
+.-.+...+.++...+ +-...+|+|+|+++++.......+ ......
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~GiE~E~~~Vd~~~~~~~~---------------------------------~~~~~~ 61 (422)
T 2gwd_A 15 PLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMK---------------------------------YDQIAE 61 (422)
T ss_dssp CCCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCBCC---------------------------------HHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCC---------------------------------HHHHHH
T ss_conf 88999999999837888456758986661466679897798---------------------------------377999
Q ss_pred HHHHHHHHHHHH---------CCCC-CCCCCCCCCHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-E
Q ss_conf 999999999860---------5411-222133562121036555-668887769999999999998744975444121-0
Q gi|254780185|r 186 MRSEIVSALNNI---------GVQI-TKYHNQINDAQHSFGLQS-ESLLHASDNLQKYKYSVHQVANSYCKIATFMPK-P 253 (458)
Q Consensus 186 ~~~ei~~~l~~~---------Gi~i-e~~h~E~gpGQ~Ei~~~~-~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpK-P 253 (458)
++..+.....-. .+.. ...+.|...+|.|++..+ .+.-++++.+-..+..+..++..+|....-+.. |
T Consensus 62 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~qiE~~t~p~~~~~~l~~~l~~~~~~l~~~~~~~g~~l~~~g~~P 141 (422)
T 2gwd_A 62 LLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQP 141 (422)
T ss_dssp HHHHHHHHHTCEEEEETTEEEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCS
T ss_pred HHHHHHHHCCCCEECCCCCEEEECCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
T ss_conf 99999987398531368855543379964512799668971567688999999999999999999986381011355344
Q ss_pred CCC----------------------CCC------CHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 145----------------------686------0120111111467631221555657899999999999886410000
Q gi|254780185|r 254 IAS----------------------HNG------SGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNAL 305 (458)
Q Consensus 254 ~~~----------------------~~G------sG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~ 305 (458)
+.. ..+ +|+|+|+|+-.. + .+.+..-...+..+.|-+.|+
T Consensus 142 ~~~~~~~~~~~~~ry~~l~~~~~~~~~~~~~~~~~~~~~qv~~~~~--------~----~~~~~~~~~~~~~~~p~l~aL 209 (422)
T 2gwd_A 142 KWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDFS--------S----EADMIRKFRAGLALQPIATAL 209 (422)
T ss_dssp SCCGGGSCCCSCHHHHHHHHHGGGTCSSHHHHHHHBCEEEEEECCS--------S----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCC--------C----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 5674446555672167899999850564403453002205426888--------6----788999999999987799999
Q ss_pred CCCCC
Q ss_conf 06670
Q gi|254780185|r 306 TNAST 310 (458)
Q Consensus 306 ~~Ptv 310 (458)
++-+.
T Consensus 210 ~anSP 214 (422)
T 2gwd_A 210 FANSP 214 (422)
T ss_dssp HCCBC
T ss_pred HHCCC
T ss_conf 85586
No 17
>>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} (A:19-156,A:243-337,A:461-481)
Probab=96.64 E-value=0.002 Score=40.69 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=99.1
Q ss_pred EEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 25773133089970677777865477666765457777775003655455635524446899999999998605411222
Q gi|254780185|r 125 TLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKY 204 (458)
Q Consensus 125 ~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~ 204 (458)
...+|+|.|+++++.......+..+. . . ..-..-..+
T Consensus 3 ~~t~GIE~E~llVD~~g~~a~~~hp~-------~----------------L--------------------gsal~~p~I 39 (254)
T 1va6_A 3 GIQRGLERETLRVNADGTLATTGHPE-------A----------------L--------------------GSALTHKWI 39 (254)
T ss_dssp TCEEEEEEEEEEECTTSCBCCSCSCG-------G----------------G--------------------CCTTTCSSE
T ss_pred CCCCCEEEEHHEECCCCCCCCCCCCH-------H----------------H--------------------CCCCCCCCC
T ss_conf 58746441010268897846999974-------3----------------3--------------------875317798
Q ss_pred CCCCCCHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE--------ECCCC---------------CC-
Q ss_conf 133562121036555-668887769999999999998744975444121--------01456---------------86-
Q gi|254780185|r 205 HNQINDAQHSFGLQS-ESLLHASDNLQKYKYSVHQVANSYCKIATFMPK--------PIASH---------------NG- 259 (458)
Q Consensus 205 h~E~gpGQ~Ei~~~~-~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpK--------P~~~~---------------~G- 259 (458)
.+|+.-.|.|++..+ .+.-.+.+.+--.+..+...|..+|+.+.=||- |+... .+
T Consensus 40 ttElses~LEi~Tpp~~~~~e~l~~L~~l~~~v~~~a~~e~lw~~Smg~~l~~~~~iP~A~~g~sn~~~~k~rYR~~l~~ 119 (254)
T 1va6_A 40 TTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKN 119 (254)
T ss_dssp EECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSSTTCEECCSSSCSSCCTTCCCCBCCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87557887773789999999999999999999996088753267788988887366662016875431589999999999
Q ss_pred ---------CHHHHHHHHCC-CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEE-
Q ss_conf ---------01201111114-6763122155565789999999999988641000006670014431888521201011-
Q gi|254780185|r 260 ---------SGMYLNMSIHK-GEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTY- 328 (458)
Q Consensus 260 ---------sG~Hih~Sl~~-~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~W- 328 (458)
+|+|+|+|+-+ ...++... -+.| ..|+.+|-+.+ ..| ..-|.++.-. ..+.+.--
T Consensus 120 ryg~~~q~I~GvHvhvsvp~~~q~~~~~~--~n~l----~~y~~~l~~a~------~~~-~~~y~~~g~~-~~g~~~qln 185 (254)
T 1va6_A 120 RYGALMQTISGVHYNFSLPNKSQSNLGIT--FNDL----YEYVAGLKQAI------KTP-SEEYAKIGIE-KDGKRLQIN 185 (254)
T ss_dssp HHCHHHHTCCEEEEEEECCCGGGTTSCCC--SSCH----HHHHHHHHHHH------TCB-CHHHHTTCSE-ETTEECCSC
T ss_pred HHCHHHHCCCCEEECCCCCCCCCCCCCCC--CCCC----HHHHHHHHHHH------CCC-CHHHHHHCCC-CCCHHHHHH
T ss_conf 71504421011233245776643334442--2221----88899999997------598-4268885757-886676642
Q ss_pred ----CCCC-CCCEEECCCCCCCC-----------CCEEEECCCCCCCCHHHH
Q ss_conf ----3688-76401025788765-----------412440467532127999
Q gi|254780185|r 329 ----STHN-HSASCRIPYENKSD-----------NKSIEIRFPDLSANPYLA 364 (458)
Q Consensus 329 ----G~~N-R~a~iRip~~~~~~-----------~~riE~R~~da~aNPYL~ 364 (458)
-.+| =-.+||-....++. -.+||+|+-| .||+.-
T Consensus 186 ~~~lq~ene~y~~irpk~~~~~~e~~~~al~~~gv~yie~r~ld--~np~~~ 235 (254)
T 1va6_A 186 SNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLD--INPFGG 235 (254)
T ss_dssp SBSCSSGGGCCCSEEEECCCCTTCCHHHHHHHHCCCEEEEEEEE--CCTT--
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEC--CCCCHH
T ss_conf 16222324422542556678888668999985587579876303--774099
No 18
>>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356)
Probab=93.45 E-value=0.027 Score=33.64 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHCCHHCCCCCHHHHHH--C--CC--------CCCCEEEEECCC---CCCCEEECCC
Q ss_conf 99999999988641000006670014431--8--88--------521201011368---8764010257
Q gi|254780185|r 288 GLYYLGGIIKHAKSLNALTNASTNSYKRL--L--TD--------SQSPTKLTYSTH---NHSASCRIPY 341 (458)
Q Consensus 288 ~~~fiaGil~h~~al~a~~~PtvNSYkRl--~--p~--------~~ap~~~~WG~~---NR~a~iRip~ 341 (458)
++++|+|++.|+.++++++++++|+|+|. . |. ..++..+..+.. ++-.=+|+|.
T Consensus 163 ~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~~~~~~~~~r~E~R~~d 231 (252)
T 2d3a_A 163 KAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPA 231 (252)
T ss_dssp HHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEECCCB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCC
T ss_conf 999999888678887225786066546986578877327724678777985777787876289979877
No 19
>>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:)
Probab=45.82 E-value=12 Score=16.99 Aligned_cols=68 Identities=7% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 9999999998605411222133562121036555668887769999999999998744975444121014
Q gi|254780185|r 186 MRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIA 255 (458)
Q Consensus 186 ~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~ 255 (458)
++.++...|...|++|+........+.+.+.+.-.-+ ..-..-.++..+..++.++|+..++.+....
T Consensus 18 iva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~~L~~~~~~~~~~i~i~~~~~~ 85 (91)
T 1zpv_A 18 IVAGVSGKIAELGLNIDDISQTVLDEYFTXXAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQSAAIF 85 (91)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEEEGGGT
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECC--CCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 9999999999879939980518937951899999669--9999999999999999982978999808989
No 20
>>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:1-22,A:267-440)
Probab=42.83 E-value=13 Score=16.96 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHH
Q ss_conf 036555-6688877699999999999987449754441210145686012011111146763122155565789999999
Q gi|254780185|r 214 SFGLQS-ESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYL 292 (458)
Q Consensus 214 Ei~~~~-~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fi 292 (458)
||-+.- ..++++||.-..+.....+.|++.||.+.-.+-.+.+++- +.+ .++
T Consensus 8 ~~~~~~~~~~~~~~~sN~~al~AA~~~A~~~Gy~~~ils~~l~GeAr--------------------------eva-~~~ 60 (196)
T 1x3l_A 8 EIGLRLVGEAIKAADSNSISCEAIAREAQRLGFKAYIMTTTLEGEAK--------------------------DAG-LFI 60 (196)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCEEEEEEEEECSBHH--------------------------HHH-HHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHH--------------------------HHH-HHH
T ss_conf 99999999999852971899999999999869957603788888589--------------------------999-999
Q ss_pred HHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf 9999886410000066700144318885212010113688764010257887654124404675321279999999
Q gi|254780185|r 293 GGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAI 368 (458)
Q Consensus 293 aGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~R~~da~aNPYL~lAai 368 (458)
+.+.+.+.. + ......|..+-||.| =+ |.|+.. ...+. =|--|+|++.
T Consensus 61 a~ia~~~~~-------------~-~~p~~~P~~li~GGE-tT--Vtv~G~-~G~GG----------RNQElaL~~a 108 (196)
T 1x3l_A 61 GSIVQEIAE-------------R-GRPFEPPVVLVFGGE-TT--VTIEGK-GGKGG----------PNQEIALSAT 108 (196)
T ss_dssp HHHHHHHHH-------------H-CCSSCSSEEEEEEEC-CB--CCCSSS-CCSCC----------HHHHHHHHHT
T ss_pred HHHHHHHHH-------------C-CCCCCCCEEEEECCE-EE--EEECCC-CCCCC----------HHHHHHHHHH
T ss_conf 999999986-------------2-699899859998784-37--996898-99885----------2699999999
No 21
>>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} (A:)
Probab=40.96 E-value=22 Score=15.41 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 68999999999986054-112221335621210365556688877699999999999987449754
Q gi|254780185|r 183 LHDMRSEIVSALNNIGV-QITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIA 247 (458)
Q Consensus 183 ~~~~~~ei~~~l~~~Gi-~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~A 247 (458)
....++++++.|.+.|| .+-.+|+..++-+..........-...+..-.++..++.+|++++=..
T Consensus 75 ~~~~~d~~v~~~~~~Gi~vii~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ry~~~~ 140 (341)
T 1vjz_A 75 FFEKIDRVIFWGEKYGIHICISLHRAPGYSVNKEVEEKTNLWKDETAQEAFIHHWSFIARRYKGIS 140 (341)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEEEEETTEESCTTSCCSSCTTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999975994799723688766677765554234652457779999999999872158
No 22
>>1ufa_A TT1467 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} (A:179-266,A:391-411)
Probab=36.77 E-value=7.6 Score=18.32 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 9999998579839999997899825237877
Q gi|254780185|r 7 SIIQKIAQEKVKFIDLRFTDLQGKFRHISMN 37 (458)
Q Consensus 7 ~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip 37 (458)
-|.++|++.+|+|. |+|-+|++.+...|
T Consensus 29 Gld~~L~~~GIrYF---FVDsH~I~~a~p~p 56 (109)
T 1ufa_A 29 GVDELLXRAGIRYT---FVDAHLVQGGEPLS 56 (109)
T ss_dssp CHHHHHHHTTCCEE---EECHHHHHCSCCCC
T ss_pred HHHHHHHHHCCCEE---EECCHHHHCCCCCC
T ss_conf 07899998098889---97608973478878
No 23
>>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like hydrolase; 2.45A {Bacillus subtilis subsp} (A:122-209)
Probab=30.65 E-value=33 Score=14.38 Aligned_cols=77 Identities=9% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHH-HCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEECCCCCCCHH
Q ss_conf 999999999986-054112221335621210365556688877699999999999987449754441-210145686012
Q gi|254780185|r 185 DMRSEIVSALNN-IGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM-PKPIASHNGSGM 262 (458)
Q Consensus 185 ~~~~ei~~~l~~-~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFm-pKP~~~~~GsG~ 262 (458)
.-+++|++.+.. .||+... ..+.+.|-+-+++-+...-+.-|.-.+ ..|+++|..+|+.++|- .-|.+|++-+..
T Consensus 4 ~~ve~iv~~l~~k~~i~L~p-Q~~~~~~~~k~nfYy~~~~~~~D~~~l--e~I~~~a~~~~~~v~inrcNPlAGDPen~Y 80 (88)
T 3gyg_A 4 EKVEKLVKQLHENHNILLNP-QTQLGKSRYKHNFYYQEQDEINDKKNL--LAIEKICEEYGVSVNINRCNPLAGDPEDSY 80 (88)
T ss_dssp HHHHHHHHHHHHHSSCCCEE-GGGTCGGGTTCCEEEECCCHHHHHHHH--HHHHHHHHHHTEEEEEEECCGGGTCCTTEE
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCHHHHCCEEEECCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 67899999975214620233-302221121220100123210267899--999999998665677774477258756887
Q ss_pred HH
Q ss_conf 01
Q gi|254780185|r 263 YL 264 (458)
Q Consensus 263 Hi 264 (458)
-|
T Consensus 81 DV 82 (88)
T 3gyg_A 81 DV 82 (88)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 24
>>2qlv_A Carbon catabolite derepressing protein kinase; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} (A:38-171)
Probab=29.75 E-value=31 Score=14.49 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 35524446899999999998605411222133
Q gi|254780185|r 176 TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQ 207 (458)
Q Consensus 176 ~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E 207 (458)
+|.....-.+++.+|+++|.++|+.++....|
T Consensus 12 GIrSr~~P~eiM~evyrAL~~Lg~~Wk~~~~~ 43 (134)
T 2qlv_A 12 GIRSRSYPLDVMGEIYIALKNLGAEWAKPSEE 43 (134)
T ss_dssp SEEECSCHHHHHHHHHHHHHHHTCEECCCC--
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 04468998999999999999859848316888
No 25
>>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:1-182)
Probab=28.70 E-value=35 Score=14.17 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHCCCCCCC
Q ss_conf 4468999999999986054112221335621--210365556
Q gi|254780185|r 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDA--QHSFGLQSE 220 (458)
Q Consensus 181 ~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpG--Q~Ei~~~~~ 220 (458)
......-+.+.+.|.+.||..+-..-..||- +||+...++
T Consensus 89 ~el~~~~~~L~~tL~~FgI~a~v~~i~~GP~VTryEl~pa~G 130 (182)
T 2iut_A 89 ESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAG 130 (182)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 999999999999999779708998546898589999862688
No 26
>>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP, ATP-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} (A:)
Probab=27.82 E-value=36 Score=14.14 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 35524446899999999998605411222133
Q gi|254780185|r 176 TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQ 207 (458)
Q Consensus 176 ~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E 207 (458)
+|.....-.+++.+|+++|.++|+.++...+-
T Consensus 16 GIrSrs~P~eiM~eVyrALk~Lg~eWk~~~~y 47 (137)
T 2qrd_A 16 GVRCRGDAPEILLAVYRALQRAGAQFTVPKPV 47 (137)
T ss_dssp SEEEESCHHHHHHHHHHHHHHHTCEECCCCCB
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 14468997999999999999859868555764
No 27
>>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:1-86)
Probab=25.27 E-value=41 Score=13.79 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99999999998605411222133562121036555668887769999999999998744975444121
Q gi|254780185|r 185 DMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPK 252 (458)
Q Consensus 185 ~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpK 252 (458)
.++.++...+.+.|++|.....-.-.|+|-.-+....+ ....--++.-+..+|.++|+..++.+.
T Consensus 18 Giva~is~~la~~g~nI~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~l~~~a~~~~l~~~i~~~ 82 (86)
T 1u8s_A 18 GICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS---PSNITRVETTLPLLGQQHDLITMMKRT 82 (86)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC---HHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 59999999999879959985889987962999985058---456678999999987650432578961
No 28
>>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} (A:51-98,A:292-392)
Probab=23.33 E-value=35 Score=14.19 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 9999999857983999999789982523787
Q gi|254780185|r 6 TSIIQKIAQEKVKFIDLRFTDLQGKFRHISM 36 (458)
Q Consensus 6 ~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~i 36 (458)
+.+-+..+.+++-+..+.|+|+.|..||..+
T Consensus 21 ~~l~~~~~~~k~v~~~~~~~DiaGlv~g~~l 51 (149)
T 1ni3_A 21 DWLCEAYKPKSRVPAFLTVFDIAGLTKGSXL 51 (149)
T ss_dssp HHHHHHHCCSEEECEEEEEECTGGGCCCCSH
T ss_pred HHHHHHCCCCCCCEEEEEEEECCCCCCCHHH
T ss_conf 4454413777632158999966886676225
No 29
>>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:1-93)
Probab=22.68 E-value=45 Score=13.48 Aligned_cols=66 Identities=8% Similarity=0.041 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCC--CC-HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999998605411222133562121036555--66-888776999999999999874497544412
Q gi|254780185|r 186 MRSEIVSALNNIGVQITKYHNQINDAQHSFGLQS--ES-LLHASDNLQKYKYSVHQVANSYCKIATFMP 251 (458)
Q Consensus 186 ~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~--~~-~l~aAD~~~~~k~~ik~iA~~~G~~ATFmp 251 (458)
++.+|...|...|++|+........++..+.+.. .. .....=..--++.....+|.+.|+..++-+
T Consensus 23 iVa~vt~~la~~g~NI~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~i~~ 91 (93)
T 3lou_A 23 QVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRXQWAIHD 91 (93)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 499999999978999858745348888807898999715885533889999988877765188300255
No 30
>>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} (A:1-49)
Probab=20.23 E-value=51 Score=13.16 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 999999860541122213356212103655
Q gi|254780185|r 189 EIVSALNNIGVQITKYHNQINDAQHSFGLQ 218 (458)
Q Consensus 189 ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~ 218 (458)
.|...|+..|++++.+..---||=+|+.+.
T Consensus 4 ~i~~~L~~~~~~v~~I~~spi~GlyeV~~~ 33 (49)
T 1eej_A 4 AIQQTLAKMGIKSSDIQPAPVAGMKTVLTN 33 (49)
T ss_dssp HHHHHHHHTTCCEEEEEECSSTTEEEEEET
T ss_pred HHHHHHHHCCCCEEEECCCCCCCEEEEEEC
T ss_conf 999987863994324613888862899989
Done!