RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET:
P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416)
Length = 302
Score = 190 bits (482), Expect = 4e-49
Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 13/297 (4%)
Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN--- 161
DPR A+KA +YL +T I DT G EF++FD+V S + +++ N
Sbjct: 1 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGA 60
Query: 162 -------GNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKY-HNQINDAQH 213
N H + + P D+ D+R ++++ L N G + K H + Q
Sbjct: 61 ATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQA 120
Query: 214 SFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEK 273
Q SLLHA+D++Q YKY + A K TFMPKP+ NGSGM+ + S+ K
Sbjct: 121 EINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGA 180
Query: 274 AIF-TGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHN 332
+ + +S +Y+GG++ HA SL A TN + NSYKRL+ ++P L YS N
Sbjct: 181 PLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRN 240
Query: 333 HSASCRIP-YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDE 388
SA RIP + K +E R PD S NPYLA +A+LMAGLDGI KI P +D+
Sbjct: 241 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDK 297
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A
{Salmonella typhimurium} (A:99-399)
Length = 301
Score = 181 bits (459), Expect = 2e-46
Identities = 126/300 (42%), Positives = 178/300 (59%), Gaps = 12/300 (4%)
Query: 102 YNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQ- 160
Y+RDPR A++A DYL+ T I DT+L G EFF+FD++ S S A++ E
Sbjct: 2 YDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWN 61
Query: 161 ------NGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQI-TKYHNQINDAQH 213
GN + +PP D D+RSE+ + +G+ + +H Q+
Sbjct: 62 SSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQN 121
Query: 214 SFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEK 273
+ ++ +D +Q YKY VH VA+ + K ATFMPKP+ NGSGM+ +MS+ K
Sbjct: 122 EVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGT 181
Query: 274 AIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNH 333
+F+G+++ +S + LYY+GG+IKHAK++NAL N +TNSYKRL+ ++P L YS N
Sbjct: 182 NLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNR 241
Query: 334 SASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNIDEL 389
SAS RIP + IE+RFPD +ANPYL AA+LMAGLDGI KIHPG KN+ +L
Sbjct: 242 SASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDL 301
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays}
PDB: 2d3b_A* 2d3c_A* (A:105-356)
Length = 252
Score = 141 bits (357), Expect = 1e-34
Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 29/274 (10%)
Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNN 164
+ RY+A K + + GI E+ + G
Sbjct: 1 NKRYSAAKIFSSPE--VAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGF------------ 46
Query: 165 KGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLH 224
+ D+ A G+ I+ + ++ Q F + +
Sbjct: 47 -PGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGIS 105
Query: 225 ASDNLQKYKYSVHQVANSYCKIATFMPKPIASH-NGSGMYLNMSIHKGEKAIFTGNQHDR 283
+ D + +Y + ++ + TF PKPI NG+G + N S +
Sbjct: 106 SGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTE----------SMRK 155
Query: 284 VSLKGLYYLGGIIKHAKSLNALTNASTNSYKRL--LTDSQSPTKLTYSTHNHSASCRIP- 340
+ + + + +RL ++ ++ N AS R+
Sbjct: 156 EGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGR 215
Query: 341 YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLD 374
++ E R P + +PY+ + I +
Sbjct: 216 ETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIV 249
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain,
acetylation, cytoplasm, ligase, UBL conjugation; HET:
FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370)
Length = 264
Score = 140 bits (352), Expect = 4e-34
Identities = 42/285 (14%), Positives = 82/285 (28%), Gaps = 27/285 (9%)
Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNN 164
+ R+ A K + + + G+ E+ +FD +
Sbjct: 3 NHRHEAAKLFAAHK----DEEIWFGLEQEYTLFDMYD--------------DVYGWPKGG 44
Query: 165 KGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLH 224
+ DM A G++I+ + ++ +Q F + + +
Sbjct: 45 YPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGID 104
Query: 225 ASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRV 284
D L +Y +H+VA + +F PKP+ K +
Sbjct: 105 MGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTK----EMRQPGGTK- 159
Query: 285 SLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENK 344
+ + K L + + ++ S T + N +S RIP
Sbjct: 160 --YIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVA 217
Query: 345 SDNKS-IEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDE 388
+ E R P + +PYL + I K +
Sbjct: 218 KEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDNAD-MTKEFER 261
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase,
structural genomics, structural genomics consortium,
SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
(A:129-384)
Length = 256
Score = 134 bits (338), Expect = 2e-32
Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 30/279 (10%)
Query: 104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN 163
+ R+T ++ +D + G+ E+ + G
Sbjct: 2 TNLRHTCKRIMDMVSNQH----PWFGMEQEYTLMGTDGHPFGW---------PSNGFPGP 48
Query: 164 NKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLL 223
Y + D+ A GV+I + ++ AQ F + +
Sbjct: 49 QGPYYCGVGADR-----AYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGI 103
Query: 224 HASDNLQKYKYSVHQVANSYCKIATFMPKPI-ASHNGSGMYLNMSIHKGEKAIFTGNQHD 282
D+L ++ +H+V + IATF PKPI + NG+G + N S + +
Sbjct: 104 SMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEE 163
Query: 283 RVSLKGLYYLGGIIKHAKSLNALTNAST-NSYKRLLTDSQSPTKLTYS--THNHSASCRI 339
+H + A ++ +RL ++ +S N SAS RI
Sbjct: 164 -------AIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRI 216
Query: 340 P-YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIA 377
P + E R P + +P+ A++ L
Sbjct: 217 PRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 255
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:96-127,A:223-358)
Length = 168
Score = 132 bits (333), Expect = 8e-32
Identities = 28/132 (21%), Positives = 47/132 (35%)
Query: 257 HNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRL 316
G+G + + F G R +L G +L G++ A + A A+ +
Sbjct: 35 AAGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAA 94
Query: 317 LTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGI 376
+ + + + + I + IE + +ANPYL AA + AGLDGI
Sbjct: 95 AAGAAAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGI 154
Query: 377 AKKIHPGKNIDE 388
Sbjct: 155 QSAGAAAGAAAA 166
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET:
P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114)
Length = 114
Score = 113 bits (283), Expect = 7e-26
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60
+ + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+
Sbjct: 10 TEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGF 69
Query: 61 HSKH-PNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNR 104
S H ++LL+PD ET +DPF A T+ V+DP TL+PY+R
Sbjct: 70 QSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSR 114
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A
{Salmonella typhimurium} (A:1-98)
Length = 98
Score = 102 bits (256), Expect = 1e-22
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPN 66
++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW +
Sbjct: 5 VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESD 64
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQ 100
++L+PD T +DPF+A ST+ C++ +P TLQ
Sbjct: 65 MVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQ 98
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1;
17.00A {Mus musculus} (A:1-95)
Length = 95
Score = 100 bits (251), Expect = 4e-22
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66
++ + + F+ TD G R S+ F + G D G +
Sbjct: 5 VLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASD 64
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDP 96
++L+P++ T + A +T A IC+
Sbjct: 65 IVLMPELSTAAVAAAAAAATAAVICDGGAA 94
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:128-222)
Length = 95
Score = 72.6 bits (178), Expect = 9e-14
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 175 YTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQ-SESLLHASDNLQKYK 233
+ D + +A G + A+DN +
Sbjct: 16 FPASTTAAAADQP-QEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLR 74
Query: 234 YSVHQVANSYCKIATFMPKP 253
+ +VA Y IA+
Sbjct: 75 TGLQEVARRYNAIASAAAAA 94
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:359-421)
Length = 63
Score = 65.4 bits (160), Expect = 2e-11
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 397 IPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455
I + ++L L++D E LK + I A + E+ E+ + E +
Sbjct: 5 PSEIPGKMEDALAALEQDAECLK--AGLGEAFIRAAVAAAKYEL---ENEETDAEGNKF 58
>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein;
HET: NAG; 1.90A {Tick-borne encephalitis virus}
(A:303-395)
Length = 93
Score = 26.6 bits (59), Expect = 7.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
++KR TDS T ++T+S + CRIP + ++ NP
Sbjct: 11 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 61
>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA
replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus
influenzae} (A:19-55,A:174-270)
Length = 134
Score = 26.2 bits (58), Expect = 9.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEF 452
N F D + +AF+ ++++ L L P P+ F
Sbjct: 2 DNAFSDAEFNAFVK-RIEDRLIL--LPKPLTF 30
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,276,949
Number of extensions: 143591
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 15
Length of query: 458
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 367
Effective length of database: 1,879,794
Effective search space: 689884398
Effective search space used: 689884398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)