RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416) Length = 302 Score = 190 bits (482), Expect = 4e-49 Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 13/297 (4%) Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN--- 161 DPR A+KA +YL +T I DT G EF++FD+V S + +++ N Sbjct: 1 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGA 60 Query: 162 -------GNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKY-HNQINDAQH 213 N H + + P D+ D+R ++++ L N G + K H + Q Sbjct: 61 ATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQA 120 Query: 214 SFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEK 273 Q SLLHA+D++Q YKY + A K TFMPKP+ NGSGM+ + S+ K Sbjct: 121 EINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGA 180 Query: 274 AIF-TGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHN 332 + + +S +Y+GG++ HA SL A TN + NSYKRL+ ++P L YS N Sbjct: 181 PLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRN 240 Query: 333 HSASCRIP-YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDE 388 SA RIP + K +E R PD S NPYLA +A+LMAGLDGI KI P +D+ Sbjct: 241 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDK 297 >1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:99-399) Length = 301 Score = 181 bits (459), Expect = 2e-46 Identities = 126/300 (42%), Positives = 178/300 (59%), Gaps = 12/300 (4%) Query: 102 YNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQ- 160 Y+RDPR A++A DYL+ T I DT+L G EFF+FD++ S S A++ E Sbjct: 2 YDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWN 61 Query: 161 ------NGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQI-TKYHNQINDAQH 213 GN + +PP D D+RSE+ + +G+ + +H Q+ Sbjct: 62 SSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQN 121 Query: 214 SFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEK 273 + ++ +D +Q YKY VH VA+ + K ATFMPKP+ NGSGM+ +MS+ K Sbjct: 122 EVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGT 181 Query: 274 AIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNH 333 +F+G+++ +S + LYY+GG+IKHAK++NAL N +TNSYKRL+ ++P L YS N Sbjct: 182 NLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNR 241 Query: 334 SASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNIDEL 389 SAS RIP + IE+RFPD +ANPYL AA+LMAGLDGI KIHPG KN+ +L Sbjct: 242 SASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDL 301 >2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356) Length = 252 Score = 141 bits (357), Expect = 1e-34 Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 29/274 (10%) Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNN 164 + RY+A K + + GI E+ + G Sbjct: 1 NKRYSAAKIFSSPE--VAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGF------------ 46 Query: 165 KGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLH 224 + D+ A G+ I+ + ++ Q F + + Sbjct: 47 -PGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGIS 105 Query: 225 ASDNLQKYKYSVHQVANSYCKIATFMPKPIASH-NGSGMYLNMSIHKGEKAIFTGNQHDR 283 + D + +Y + ++ + TF PKPI NG+G + N S + Sbjct: 106 SGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTE----------SMRK 155 Query: 284 VSLKGLYYLGGIIKHAKSLNALTNASTNSYKRL--LTDSQSPTKLTYSTHNHSASCRIP- 340 + + + + +RL ++ ++ N AS R+ Sbjct: 156 EGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGR 215 Query: 341 YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLD 374 ++ E R P + +PY+ + I + Sbjct: 216 ETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIV 249 >3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370) Length = 264 Score = 140 bits (352), Expect = 4e-34 Identities = 42/285 (14%), Positives = 82/285 (28%), Gaps = 27/285 (9%) Query: 105 DPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNN 164 + R+ A K + + + G+ E+ +FD + Sbjct: 3 NHRHEAAKLFAAHK----DEEIWFGLEQEYTLFDMYD--------------DVYGWPKGG 44 Query: 165 KGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLH 224 + DM A G++I+ + ++ +Q F + + + Sbjct: 45 YPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGID 104 Query: 225 ASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRV 284 D L +Y +H+VA + +F PKP+ K + Sbjct: 105 MGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTK----EMRQPGGTK- 159 Query: 285 SLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENK 344 + + K L + + ++ S T + N +S RIP Sbjct: 160 --YIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVA 217 Query: 345 SDNKS-IEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDE 388 + E R P + +PYL + I K + Sbjct: 218 KEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDNAD-MTKEFER 261 >2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:129-384) Length = 256 Score = 134 bits (338), Expect = 2e-32 Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 30/279 (10%) Query: 104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN 163 + R+T ++ +D + G+ E+ + G Sbjct: 2 TNLRHTCKRIMDMVSNQH----PWFGMEQEYTLMGTDGHPFGW---------PSNGFPGP 48 Query: 164 NKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLL 223 Y + D+ A GV+I + ++ AQ F + + Sbjct: 49 QGPYYCGVGADR-----AYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGI 103 Query: 224 HASDNLQKYKYSVHQVANSYCKIATFMPKPI-ASHNGSGMYLNMSIHKGEKAIFTGNQHD 282 D+L ++ +H+V + IATF PKPI + NG+G + N S + + Sbjct: 104 SMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEE 163 Query: 283 RVSLKGLYYLGGIIKHAKSLNALTNAST-NSYKRLLTDSQSPTKLTYS--THNHSASCRI 339 +H + A ++ +RL ++ +S N SAS RI Sbjct: 164 -------AIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRI 216 Query: 340 P-YENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIA 377 P + E R P + +P+ A++ L Sbjct: 217 PRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 255 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358) Length = 168 Score = 132 bits (333), Expect = 8e-32 Identities = 28/132 (21%), Positives = 47/132 (35%) Query: 257 HNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRL 316 G+G + + F G R +L G +L G++ A + A A+ + Sbjct: 35 AAGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAA 94 Query: 317 LTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGI 376 + + + + + I + IE + +ANPYL AA + AGLDGI Sbjct: 95 AAGAAAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGI 154 Query: 377 AKKIHPGKNIDE 388 Sbjct: 155 QSAGAAAGAAAA 166 >2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114) Length = 114 Score = 113 bits (283), Expect = 7e-26 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60 + + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+ Sbjct: 10 TEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGF 69 Query: 61 HSKH-PNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNR 104 S H ++LL+PD ET +DPF A T+ V+DP TL+PY+R Sbjct: 70 QSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSR 114 >1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:1-98) Length = 98 Score = 102 bits (256), Expect = 1e-22 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPN 66 ++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW + Sbjct: 5 VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESD 64 Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQ 100 ++L+PD T +DPF+A ST+ C++ +P TLQ Sbjct: 65 MVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQ 98 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:1-95) Length = 95 Score = 100 bits (251), Expect = 4e-22 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66 ++ + + F+ TD G R S+ F + G D G + Sbjct: 5 VLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASD 64 Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDP 96 ++L+P++ T + A +T A IC+ Sbjct: 65 IVLMPELSTAAVAAAAAAATAAVICDGGAA 94 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:128-222) Length = 95 Score = 72.6 bits (178), Expect = 9e-14 Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 2/80 (2%) Query: 175 YTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQ-SESLLHASDNLQKYK 233 + D + +A G + A+DN + Sbjct: 16 FPASTTAAAADQP-QEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLR 74 Query: 234 YSVHQVANSYCKIATFMPKP 253 + +VA Y IA+ Sbjct: 75 TGLQEVARRYNAIASAAAAA 94 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:359-421) Length = 63 Score = 65.4 bits (160), Expect = 2e-11 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 397 IPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455 I + ++L L++D E LK + I A + E+ E+ + E + Sbjct: 5 PSEIPGKMEDALAALEQDAECLK--AGLGEAFIRAAVAAAKYEL---ENEETDAEGNKF 58 >1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET: NAG; 1.90A {Tick-borne encephalitis virus} (A:303-395) Length = 93 Score = 26.6 bits (59), Expect = 7.3 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 ++KR TDS T ++T+S + CRIP + ++ NP Sbjct: 11 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 61 >3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} (A:19-55,A:174-270) Length = 134 Score = 26.2 bits (58), Expect = 9.6 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEF 452 N F D + +AF+ ++++ L L P P+ F Sbjct: 2 DNAFSDAEFNAFVK-RIEDRLIL--LPKPLTF 30 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,276,949 Number of extensions: 143591 Number of successful extensions: 289 Number of sequences better than 10.0: 1 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 15 Length of query: 458 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 367 Effective length of database: 1,879,794 Effective search space: 689884398 Effective search space used: 689884398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.9 bits)