RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 424 bits (1092), Expect = e-119
Identities = 202/464 (43%), Positives = 291/464 (62%), Gaps = 13/464 (2%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66
++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW + +
Sbjct: 5 VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESD 64
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126
++L+PD T +DPF+A ST+ C++ +P TLQ Y+RDPR A++A DYL+ T I DT+
Sbjct: 65 MVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTV 124
Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN------GNNKGYDSHAKSSY-TLPP 179
L G EFF+FD++ S S A++ E N G NKG+ K Y +PP
Sbjct: 125 LFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPP 184
Query: 180 QDKLHDMRSEIVSALNNIGVQITKYHNQINDA-QHSFGLQSESLLHASDNLQKYKYSVHQ 238
D D+RSE+ + +G+ + +H+++ A Q+ + ++ +D +Q YKY VH
Sbjct: 185 VDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHN 244
Query: 239 VANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKH 298
VA+ + K ATFMPKP+ NGSGM+ +MS+ K +F+G+++ +S + LYY+GG+IKH
Sbjct: 245 VAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKH 304
Query: 299 AKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLS 358
AK++NAL N +TNSYKRL+ ++P L YS N SAS RIP + IE+RFPD +
Sbjct: 305 AKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPA 364
Query: 359 ANPYLAPAAILMAGLDGIAKKIHPG----KNIDELSLEEQNTIPRICISLRESLENLDKD 414
ANPYL AA+LMAGLDGI KIHPG KN+ +L EE IP++ SL E+L LD D
Sbjct: 365 ANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNALDLD 424
Query: 415 REFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
REFLK G VF D+ IDA+I L+ +E ++ +P PVEFE+Y S+
Sbjct: 425 REFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 468
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A*
Length = 486
Score = 319 bits (818), Expect = 8e-88
Identities = 174/470 (37%), Positives = 261/470 (55%), Gaps = 19/470 (4%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66
+ + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+ S H +
Sbjct: 17 VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESD 76
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126
+LL+PD ET +DPF A T+ V+DP TL+PY+RDPR A+KA +YL +T I DT
Sbjct: 77 MLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTA 136
Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN---------NKGYDSHAKSSY-T 176
G EF++FD+V S + +++ N N+GY K Y
Sbjct: 137 YFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGYFP 196
Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQIND-AQHSFGLQSESLLHASDNLQKYKYS 235
+ P D+ D+R ++++ L N G + K H+++ Q Q SLLHA+D++Q YKY
Sbjct: 197 VAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYI 256
Query: 236 VHQVANSYCKIATFMPKPIASHNGSGMYLNMSI-HKGEKAIFTGNQHDRVSLKGLYYLGG 294
+ A K TFMPKP+ NGSGM+ + S+ G ++ + +S +Y+GG
Sbjct: 257 IKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGG 316
Query: 295 IIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIR 353
++ HA SL A TN + NSYKRL+ ++P L YS N SA RIP + +E R
Sbjct: 317 LLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFR 376
Query: 354 FPDLSANPYLAPAAILMAGLDGIAKKIHPGK----NIDELSLEEQNTIPRICISLRESLE 409
PD S NPYLA +A+LMAGLDGI KI P ++ EL EE +IP+ L + ++
Sbjct: 377 SPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLSDVID 436
Query: 410 NLDKDREFLKVGNVFDDDQIDAFINLKMK-EVLKLESSPSPVEFEMYCSI 458
L+ D E+L G VF +D I+ +I+ K + E+ + P P EF +Y +
Sbjct: 437 RLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 486
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 238 bits (609), Expect = 2e-63
Identities = 75/454 (16%), Positives = 121/454 (26%), Gaps = 39/454 (8%)
Query: 5 ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH 64
A ++ + + F+ TD G R S+ F + G D G
Sbjct: 2 AEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAA 61
Query: 65 -PNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIG 123
+++L+P++ T IC+ PRY A+ A+ LQ
Sbjct: 62 ASDIVLMPELSTXXXXXXXXXXXXXVICD-----GGXXXXXSPRYIARAALAQLQAAGAA 116
Query: 124 DTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKL 183
LL +F +F + S+
Sbjct: 117 AGLLSAFIADFCIFGVPE-------------------------VINSKTISFPASTTAAA 151
Query: 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSES-LLHASDNLQKYKYSVHQVANS 242
D E + G E+ A+DN + + +VA
Sbjct: 152 ADQPQEAAA-GGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARR 210
Query: 243 YCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSL 302
Y + + F G R +L G +L G
Sbjct: 211 YNAXXXXXXXXXXXXXXXXSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGXXXXXXXX 270
Query: 303 NALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
+ + I IE + +ANPY
Sbjct: 271 XXXXXXXXXXXXXXXXXXXXXXXTAWGXXXXXCALNIXXXXXXKGAQIENKAGAAAANPY 330
Query: 363 LAPAAILMAGLDGIAKKIHPGKNIDE-LSLEEQNTIPRICISLRESLENLDKDREFLKVG 421
L AA + AGLDGI + IP + ++L L++D E LK
Sbjct: 331 LVLAATVAAGLDGIQSAGAAAGAAAADXXXXXPSEIPG---KMEDALAALEQDAECLK-- 385
Query: 422 NVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455
+ I A + E+ E+ +F Y
Sbjct: 386 AGLGEAFIRAAVAAAKYELENEETDAEGNKFLEY 419
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
genomics, structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 152 bits (384), Expect = 2e-37
Identities = 70/367 (19%), Positives = 124/367 (33%), Gaps = 38/367 (10%)
Query: 15 EKVK----FIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70
EKV+ +ID L+ K R + E N FD SS + ++ L+
Sbjct: 43 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWN---FDGSSTLQSEGSNSDMYLV 99
Query: 71 PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130
P M DPF +C V+ +P + R+T ++ +D +
Sbjct: 100 PA--AMFRDPFRKDPNKLVLCEVFKYNR-RPAETNLRHTCKRIMDMVSN----------- 145
Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190
+ + + + F N + D+
Sbjct: 146 -------QHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAH 198
Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250
A GV+I + ++ AQ F + + D+L ++ +H+V + IATF
Sbjct: 199 YRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFD 258
Query: 251 PKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST 310
PKPI N +G + + G ++ +H + A
Sbjct: 259 PKPI-PGNWNGAGCHTNFSTKAMREENGLKYI-----EEAIEKLSKRHQYHIRAYDPKGG 312
Query: 311 -NSYKRLLTDSQSPTKLTYS--THNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366
++ +RL ++ +S N SAS RIP + K E R P + +P+
Sbjct: 313 LDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTE 372
Query: 367 AILMAGL 373
A++ L
Sbjct: 373 ALIRTCL 379
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 150 bits (378), Expect = 8e-37
Identities = 66/376 (17%), Positives = 131/376 (34%), Gaps = 36/376 (9%)
Query: 16 KVKFIDLRFT-DLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLIPDIE 74
+++ + T +L+ K R + ++ ++ N FD SS + ++ L P
Sbjct: 25 IAEYVWIDGTGNLRSKGRTLKKRITSIDQLPEWN---FDGSSTNQAPGHDSDIYLKPV-- 79
Query: 75 TMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEF 134
+ DPF + + Y+ P + R+ A K + + G+ E+
Sbjct: 80 AYYPDPFRRGDNIVVLAACYNNDG-TPNKFNHRHEAAKLFAAH----KDEEIWFGLEQEY 134
Query: 135 FVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSAL 194
+FD K G+ Y + DM A
Sbjct: 135 TLFDMYDDVYGWPKGGY---------PAPQGPYYCGVGAGKVYA-----RDMIEAHYRAC 180
Query: 195 NNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPI 254
G++I+ + ++ +Q F + + + D L +Y +H+VA + +F PKP+
Sbjct: 181 LYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPL 240
Query: 255 -ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSY 313
NG+G + N+S + + G ++ +++ + K L + +
Sbjct: 241 KGDWNGAGCHANVSTKEMRQ--PGGTKYIEQAIEK------LSKRHAEHIKLYGSDNDMR 292
Query: 314 KRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPAAILMAG 372
++ S T + N +S RIP + E R P + +PYL +
Sbjct: 293 LTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETV 352
Query: 373 LDGIAKKIHPGKNIDE 388
I K +
Sbjct: 353 CGAI-DNADMTKEFER 367
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 144 bits (363), Expect = 4e-35
Identities = 67/367 (18%), Positives = 129/367 (35%), Gaps = 36/367 (9%)
Query: 11 KIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70
KI E + +I DL+ K R + V+ ++ L +D SS + ++L
Sbjct: 18 KIIAEYI-WIGGSGMDLRSKARTLPGPVTDPSK---LPKWNYDGSSTGQAPGEDSEVILY 73
Query: 71 PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130
P + DPF + + +C+ Y P +P + RY+A K + + GI
Sbjct: 74 PQ--AIFKDPFRRGNNILVMCDCYTPAG-EPIPTNKRYSAAKIFSSPE--VAAEEPWYGI 128
Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190
E+ + G+ + Q G + + D+
Sbjct: 129 EQEYTLLQKDT----NWPLGWPIGGFPGPQGPYYCGIGAE---------KSFGRDIVDAH 175
Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250
A G+ I+ + ++ Q F + + + D + +Y + ++ + TF
Sbjct: 176 YKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFD 235
Query: 251 PKP-IASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAS 309
PKP NG+G + N S K ++H + + A
Sbjct: 236 PKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKA-------AIEKLKLRHKEHIAAYGE-- 286
Query: 310 TNSYKRLLTDSQSPT--KLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366
+ +RL ++ ++ N AS R+ E + + K E R P + +PY+ +
Sbjct: 287 -GNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTS 345
Query: 367 AILMAGL 373
I +
Sbjct: 346 MIAETTI 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 78.8 bits (194), Expect = 2e-15
Identities = 91/512 (17%), Positives = 162/512 (31%), Gaps = 192/512 (37%)
Query: 3 DKATSIIQKIAQEKVKFI----DLRFTDLQGKFRHISMNVSL--FNENTLLNGITFDSSS 56
D+ T+ + + KF+ L G+F + +N+ L F EN L G +
Sbjct: 52 DEPTTPAELVG----KFLGYVSSLVEPSKVGQFDQV-LNLCLTEF-ENCYLEG-----ND 100
Query: 57 IDGWHSKHPNLL--LIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAI 114
I H+ L L+ + +T + Y TA+
Sbjct: 101 I---HA----LAAKLLQENDT-------TLVKTKELIKNY-------------ITARIMA 133
Query: 115 DYLQTTDIGDTLLL-----------------GITTEFFVFD---NVHCTISPIKSGFALE 154
++ L G T ++F + +++ T +
Sbjct: 134 K-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKF 190
Query: 155 STEFLQN------------GNNKGYDSHA--KSSYTLPPQDKLHDMRSEIVSA-----LN 195
S E L +G + ++ P +D L +S L
Sbjct: 191 SAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYL-------LSIPISCPL- 240
Query: 196 NIG-VQITKY----HN------QIND-----AQHSFGLQSESLLHASDNLQKYKYSVHQV 239
IG +Q+ Y ++ HS GL + + +D+ + + SV +
Sbjct: 241 -IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 240 AN------SYCKIA---TFMPKPIASH----NGSG----MYL---NMSIHKGEKAIFTGN 279
C A T +P P N G M L N++ + + + N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTN 357
Query: 280 QH----DRVSLKGL------YYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYS 329
H +V + L + G +SL L N L +++P+ L S
Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSG---PPQSLYGL-----NLT---LRKAKAPSGLDQS 405
Query: 330 THNHSASCRIPYENKSDNK-SIEIRFPDLSA---NPYLAPAA-ILMAGL--DGI---AK- 378
RIP+ S+ K RF +++ + L PA+ ++ L + + AK
Sbjct: 406 --------RIPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 379 -KI-----HPGKNIDELSLEEQNTIPRI--CI 402
+I G ++ LS + RI CI
Sbjct: 455 IQIPVYDTFDGSDLRVLS---GSISERIVDCI 483
Score = 39.5 bits (92), Expect = 0.001
Identities = 78/447 (17%), Positives = 126/447 (28%), Gaps = 192/447 (42%)
Query: 68 LLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLL 127
LL+P +Q F L P T A D TT L+
Sbjct: 20 LLVPT--ASF--FIASQLQEQFNK------IL------PEPTEGFAADDEPTTPAE--LV 61
Query: 128 LGITTEF--FVFDNVHCTISPIKSGFALES---------TEFLQNGNNKGYDSHAKSSYT 176
+F +V V P K G + +L+ GN D HA ++
Sbjct: 62 G----KFLGYVSSLVE----PSKVGQFDQVLNLCLTEFENCYLE-GN----DIHALAAKL 108
Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLL--HASDNLQKYKY 234
L D E++ Y A+ F +S S L +
Sbjct: 109 LQENDTTLVKTKELIKN----------YITARIMAKRPFDKKSNSALFRAVGEG------ 152
Query: 235 SVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIF--TGNQHDRVS-LKGLY- 290
N + AIF GN D L+ LY
Sbjct: 153 ------------------------------NAQLV----AIFGGQGNTDDYFEELRDLYQ 178
Query: 291 -Y---LGGIIKH-AKSLNALTNASTNSYKRL---------LTDSQS-PTK---------- 325
Y +G +IK A++L+ L + ++ K L + + P K
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 326 ----LTYSTHNHSASCRI----P--------------------------------YENKS 345
+ H + + ++ P + +
Sbjct: 239 PLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV- 296
Query: 346 DNKSIEI------R----FPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE-Q 394
K+I + R +P+ S L P+ IL L+ P +I L+ E+ Q
Sbjct: 297 -RKAITVLFFIGVRCYEAYPNTS----LPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 395 NTI-------P---RICISLRESLENL 411
+ + P ++ ISL +NL
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNL 377
Score = 29.5 bits (66), Expect = 1.7
Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 89/251 (35%)
Query: 264 LNMSIHKGEKAIFTGNQHDRV--SLKGLYY---LGGIIKHAKSLNALTNASTN----SYK 314
+N++IH F G + R+ + + + + G +K K + ST+ S K
Sbjct: 1670 VNLTIH------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 315 RLLTDSQ----------------------SPTKLTYSTHN---HSASCRIPYENKSDNKS 349
LL+ +Q P T++ H+ ++A + +D S
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-----ADVMS 1778
Query: 350 IE--------------IRFP--DLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393
IE + P +L + Y G+ IA I+PG+ S E
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNY---------GM--IA--INPGRVAASFSQEA 1825
Query: 394 -QNTIPRICIS---LRE----SLENLDKDREFLKVGNVFDDDQIDA---FINLKMKEVLK 442
Q + R+ L E ++EN ++++ G++ D + FI L+ ++++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVEN----QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 443 LESSPSPVEFE 453
L+ S S E E
Sbjct: 1882 LQKSLSLEEVE 1892
>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET:
NAG; 1.90A {Tick-borne encephalitis virus} SCOP:
b.1.18.4 f.10.1.1 PDB: 1k4r_A 1na4_A 1n6g_A* 1urz_A
1z3r_A 2gg1_A 1z66_A
Length = 395
Score = 30.1 bits (68), Expect = 1.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
++KR TDS T ++T+S + CRIP + ++ NP
Sbjct: 313 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 363
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 12/35 (34%)
Query: 297 KHA-KSLNALTNASTNSYKRLLTDSQSPT---KLT 327
K A K L A S K L D +P K T
Sbjct: 19 KQALKKLQA-------SLK-LYADDSAPALAIKAT 45
Score = 28.4 bits (62), Expect = 3.7
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 19/38 (50%)
Query: 414 DREFLKVGNVFDDDQIDAFINLKMKEVLKL---ESSPS 448
+++ LK K++ LKL +S+P+
Sbjct: 18 EKQALK----------------KLQASLKLYADDSAPA 39
>1k3p_A Type II citrate synthase; lyase; 2.20A {Escherichia coli} SCOP:
a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A*
Length = 426
Score = 28.5 bits (63), Expect = 2.9
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Query: 357 LSANPYLAPAAILMAGLDGIAKKIHPGKNIDELS-LEEQNTIPRICISLRESLENLDKDR 415
+ + P A + AG+ + H G N L LEE +++ I R + + D R
Sbjct: 240 TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFR 299
Query: 416 EFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
V+ + A + + + E E+ +
Sbjct: 300 LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMEL 342
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural
genomics, PSI, protein structure initiative; 1.60A
{Enterococcus faecalis} SCOP: a.4.5.28
Length = 144
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 386 IDELSLEEQNTIPRICISLRESLENLDKDREFLKVG 421
+ LS E + + L +N+ +D EF+K G
Sbjct: 112 LQGLSEVEISQLADY---LVRMRKNVSEDWEFVKKG 144
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.3 bits (63), Expect = 3.8
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 360 NPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393
PYLA ++ LD +K+ +D + L
Sbjct: 665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPT 698
>2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi
strain, structure, transferase; NMR {Yellow fever virus}
PDB: 2jv6_A
Length = 112
Score = 27.8 bits (62), Expect = 4.8
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
S+ + TD+ T ++ A C+IP D + + ++ NP
Sbjct: 19 SFVKNPTDTGHGTVVMQVKVPK---GAPCKIPVIVADDLTAAINKGILVTVNPI 69
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
lipid metabolism, secreted; HET: PLM; 1.40A {Pseudomonas
aeruginosa} PDB: 2zxc_A*
Length = 646
Score = 27.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 91 CNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFV 136
C I N+ P Y + +Q IG LLG EF V
Sbjct: 370 CQAEKTILADTGNKKP-YPWTPTVLPIQMFRIGQLELLGAPAEFTV 414
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,741,057
Number of extensions: 166969
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 22
Length of query: 458
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 362
Effective length of database: 3,365,806
Effective search space: 1218421772
Effective search space used: 1218421772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)