RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 368
Score = 271 bits (694), Expect = 8e-74
Identities = 164/368 (44%), Positives = 231/368 (62%), Gaps = 12/368 (3%)
Query: 103 NRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN- 161
+RDPR A++A DYL+ T I DT+L G EFF+FD++ S S A++ E N
Sbjct: 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNS 60
Query: 162 -----GNNKGYDSHAKSSY-TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQ-HS 214
G NKG+ K Y +PP D D+RSE+ + +G+ + +H+++ A +
Sbjct: 61 STKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNE 120
Query: 215 FGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKA 274
+ ++ +D +Q YKY VH VA+ + K ATFMPKP+ NGSGM+ +MS+ K
Sbjct: 121 VATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTN 180
Query: 275 IFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHS 334
+F+G+++ +S + LYY+GG+IKHAK++NAL N +TNSYKRL+ ++P L YS N S
Sbjct: 181 LFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240
Query: 335 ASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNIDELS 390
AS RIP + IE+RFPD +ANPYL AA+LMAGLDGI KIHPG KN+ +L
Sbjct: 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLP 300
Query: 391 LEEQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPV 450
EE IP++ SL E+L LD DREFLK G VF D+ IDA+I L+ +E ++ +P PV
Sbjct: 301 PEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPV 360
Query: 451 EFEMYCSI 458
EFE+Y S+
Sbjct: 361 EFELYYSV 368
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 374
Score = 242 bits (618), Expect = 5e-65
Identities = 135/373 (36%), Positives = 199/373 (53%), Gaps = 18/373 (4%)
Query: 104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN 163
RDPR A+KA +YL +T I DT G EF++FD+V S + +++ N
Sbjct: 2 RDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTG 61
Query: 164 ---------NKGYDSHAKSSY-TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQ- 212
N+GY K Y + P D+ D+R ++++ L N G + K H+++
Sbjct: 62 AATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQ 121
Query: 213 HSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSI-HKG 271
Q SLLHA+D++Q YKY + A K TFMPKP+ NGSGM+ + S+ G
Sbjct: 122 AEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDG 181
Query: 272 EKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTH 331
++ + +S +Y+GG++ HA SL A TN + NSYKRL+ ++P L YS
Sbjct: 182 APLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQR 241
Query: 332 NHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNI 386
N SA RIP + +E R PD S NPYLA +A+LMAGLDGI KI P K++
Sbjct: 242 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDL 301
Query: 387 DELSLEEQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMK-EVLKLES 445
EL EE +IP+ L + ++ L+ D E+L G VF +D I+ +I+ K + E+ +
Sbjct: 302 YELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNI 361
Query: 446 SPSPVEFEMYCSI 458
P P EF +Y +
Sbjct: 362 RPHPYEFALYYDV 374
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 100
Score = 100 bits (250), Expect = 2e-22
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 5 ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSK 63
A ++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW
Sbjct: 2 AEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGIN 61
Query: 64 HPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPY 102
+++L+PD T +DPF+A ST+ C++ +P TLQ Y
Sbjct: 62 ESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGY 100
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 93.9 bits (233), Expect = 2e-20
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPN 66
+ + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+ +
Sbjct: 5 VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESD 64
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPY 102
+LL+PD ET +DPF A T+ V+DP TL+PY
Sbjct: 65 MLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPY 100
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 28.9 bits (64), Expect = 0.81
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 386 IDELSLEEQNTIPRICISLRESLENLDKDREFLKVG 421
+ LS E + + L +N+ +D EF+K G
Sbjct: 112 LQGLSEVEISQLADY---LVRMRKNVSEDWEFVKKG 144
>d1svba1 b.1.18.4 (A:303-395) Envelope glycoprotein {Tick-borne
encephalitis virus [TaxId: 11084]}
Length = 93
Score = 26.6 bits (59), Expect = 4.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
++KR TDS T ++T+S + CRIP + ++ NP
Sbjct: 11 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 61
>d1ztxe1 b.1.18.4 (E:300-400) Envelope glycoprotein {West Nile virus
[TaxId: 11082]}
Length = 101
Score = 25.5 bits (56), Expect = 8.8
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
+ D+ T +L Y+ + C++P + + + ++ NP+
Sbjct: 11 KFLGTPADTGHGTVVLELQYTGTD--GPCKVPISSVASLNDLTPVGRLVTVNPF 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,627,299
Number of extensions: 74153
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)