BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (458 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/458 (100%), Positives = 458/458 (100%) Query: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW Sbjct: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60 Query: 61 HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT 120 HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT Sbjct: 61 HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT 120 Query: 121 DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ 180 DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ Sbjct: 121 DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ 180 Query: 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA 240 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA Sbjct: 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA 240 Query: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK 300 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK Sbjct: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK 300 Query: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN Sbjct: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360 Query: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV Sbjct: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420 Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI Sbjct: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 >gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 103 bits (258), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 171/394 (43%), Gaps = 30/394 (7%) Query: 66 NLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDT 125 +L L PD+ T+ + P+ T +C+V D + PR ++ +++ ++ Sbjct: 88 DLRLSPDLSTLSIVPWEMDPTAQIVCDVVD-YNGKEVTYTPRNVLKRVLNFYAQNELKP- 145 Query: 126 LLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHD 185 ++ EF++ P++ L SY++ ++ + Sbjct: 146 -IIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSIL-----------GGQSYSIMGINEFDE 193 Query: 186 MRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCK 245 + +I G++I ++ AQ ++ L +D + +K ++ + A + Sbjct: 194 IIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDI 253 Query: 246 IATFMPKPIASHNGSGMYLNMSIH--KGEKAIFT---GNQHDRVSLKGLYYLGGIIKHAK 300 ATFM KP+ ++ GS M+++ S+ K + IF+ G++ D Y++GG+ K+ Sbjct: 254 YATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFR----YFIGGLQKYIP 309 Query: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360 + + NSY+RL+ D P + N + + RIP+ + + K IE R P N Sbjct: 310 NALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSD-AKTKRIENRLPSSDTN 368 Query: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420 PYL AA L GL GI +KI P + + +E +PR L E++ L+ F Sbjct: 369 PYLVLAASLACGLLGILQKIEPTPPTMKSANQEAINLPR---GLLEAVTLLENTSHF--- 422 Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEM 454 ++F ID + NLK E SP E E Sbjct: 423 KDIFGSQFIDMYANLKRNEFETFMQVISPWEREF 456 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 410 NLDKDREFLKVGNVFDDDQIDAFINLK-MKEVLKLESSPSP-VEFEMYCSI 458 LD D ++V F ID+FI L ++E L E P P M C I Sbjct: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 22/37 (59%) Query: 408 LENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLE 444 + N DK + + ++Q+DA +NL+++ + KLE Sbjct: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 345 SDNKSIEIRF-PDLSANPYLAPAAILMAGLDGIAKK 379 S N++ E R PD+ AN L+P ++ L G +K Sbjct: 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRK 569 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 24.3 bits (51), Expect = 4.5, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 187 RSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNL 229 R +I + LN++G++I + + ++ G+ + LL D L Sbjct: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 >gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 17/37 (45%) Query: 79 DPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAID 115 DP Y STVA + N + + + D R K ID Sbjct: 300 DPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEID 336 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQ--HDRVSLKGL 289 N + IAT + P+A YL+ + + E GN+ +D + LK L Sbjct: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,155 Number of Sequences: 1233 Number of extensions: 12479 Number of successful extensions: 46 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 11 length of query: 458 length of database: 328,796 effective HSP length: 77 effective length of query: 381 effective length of database: 233,855 effective search space: 89098755 effective search space used: 89098755 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)