HHsearch alignment of GI: 254780186 and MMDB domain: 1vqq_A_370-564
>1vqq_A (A:370-564) Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus}
Probab=96.53 E-value=0.0004 Score=47.17 Aligned_cols=164 Identities=15% Similarity=0.020 Sum_probs=96.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCC---CC-CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC-CCCH
Q ss_conf 78640199999999999999611289999946576---56-7720444201148984763111379999986448-8888
Q gi|254780186|r 55 SEFLFSIQSISKVFLLTIALRKFDEEIWKRVGREP---SG-SSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLG-SSSA 129 (311)
Q Consensus 55 ~~~~FsiqSisK~f~l~~al~~~G~~V~~~VG~eP---Sg-~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~-~~~~ 129 (311)
+...|+--|+-|||+++.||++..-...+.+...+ .+ ..++.- ..+..+..+.++-=+-|+..++=+.- +...
T Consensus 4 a~~~~~pGStfK~~t~~aale~g~~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~g~~~l~~Al~~S~N~~f~~l~~ 81 (195)
T 1vqq_A 4 FQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGY--NVTRYEVVNGNIDLKQAIESSDNIFFARVAL 81 (195)
T ss_dssp TTSCBCCGGGHHHHHHHHHHHTTSSCTTCEEEECSSEECSSGGGTTC--CEECSSCCCEEEEHHHHHHTTCHHHHHHHHH
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC--EECCCCCCCCCEEEEEHHHCCCCEEEEEEEC
T ss_conf 10320000111222211232322322342001222311102465532--0125568997053310132176068999721
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999999872899862478999985112412799999998278888---99899999999873000079999999
Q gi|254780186|r 130 DDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR---YKIEDVLKFYFHQCSLMMNCVQLAKS 206 (311)
Q Consensus 130 ~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~---~dv~~~Ld~Yf~~Csi~~t~~dLA~~ 206 (311)
+--.+.+.++++++=-..+..++..-- ..+.++ .+.......++-+-.+.+|.-++|.+
T Consensus 82 ~lg~~~~~~~~~~~G~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~tplq~a~~ 143 (195)
T 1vqq_A 82 ELGSKKFEKGMKKLGVGEDIPSDYPFY------------------NAQISNKNLDNEILLADSGYGQGEILINPVQILSI 143 (195)
T ss_dssp HHCHHHHHHHHHHTTTTSCCCCSSCCC------------------CCBSCSSCCCSHHHHHHHHTTCSSCBBCHHHHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCEEECCCCCCEEEECHHHHHHH
T ss_conf 322222110000256444578631233------------------34467754566420000035652073269999999
Q ss_pred HHHHHCCC-----------CCCCCCCEECCHHHHHHHHHHHHH
Q ss_conf 99982597-----------077788755189999775544541
Q gi|254780186|r 207 GLYLAFRG-----------YNSLTNQSVISPLQSRCVNAVMLT 238 (311)
Q Consensus 207 ~a~LAn~G-----------~~P~t~~~vi~~~~~~~v~s~M~T 238 (311)
.+++||+| .++..++|+++++.+..+...|..
T Consensus 144 ~a~ian~G~~~~P~~i~~v~d~~~~~~~~~~~~~~~l~~~m~~ 186 (195)
T 1vqq_A 144 YSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQ 186 (195)
T ss_dssp HHGGGTTTCEECCBCBTTSCCCEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999749808511899557887677778999999999999999