HHsearch results for GI: 254780186 and protein with PDBid: 3equ_A
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=94.87 E-value=0.083 Score=31.14 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHH----HHHHCCCCCCCCCCHHHHHHHHHHH-----HCCCC
Q ss_conf 64019999999999999961128999994657656772044----4201148984763111379999986-----44888
Q gi|254780186|r 57 FLFSIQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSI----VQLENENGIPRNPFVNAGAIVVSDA-----VLGSS 127 (311)
Q Consensus 57 ~~FsiqSisK~f~l~~al~~~G~~V~~~VG~ePSg~~FNSi----~~Le~~~g~P~NPmiNAGAI~~~sl-----i~~~~ 127 (311)
-.|..-|+-|||+++.||+...- +....|+.- ..-.....+.+.++-=..||..++= +..+.
T Consensus 265 ~~y~PGStfK~~t~~aal~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~al~~S~N~~~~~l~~~~ 335 (542)
T 3equ_A 265 DMIEPGSAIKPFVIAKALDAGKT---------DLNERLNTQPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARF 335 (542)
T ss_dssp CCBCCGGGGHHHHHHHHHHHTSS---------CTTCEEECCCEEETTEEECCSSCCSEEEHHHHHHHTCHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCE---------ECCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHHC
T ss_conf 76778426668999999856963---------033011457753443211233677842489985417451545788872
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88999999999999872899862478999985112412799999998278888998999999998730000799999999
Q gi|254780186|r 128 SADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSG 207 (311)
Q Consensus 128 ~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~ 207 (311)
. .+++.++++++--+.+..+|- -.|......+. . ....-+....-+-|- +.+|.-+||.+.
T Consensus 336 g----~~~~~~~~~~fG~g~~t~idl---p~e~~~~~~~~---------~--~~~~~~~~~~~~Gqg-~~~Tplq~a~~~ 396 (542)
T 3equ_A 336 G----AEEMYDFYHELGIGVRMHSGF---PGETAGLLRNW---------R--RWRPIEQATMSFGYG-LQLSLLQLARAY 396 (542)
T ss_dssp C----HHHHHHHHHHTTTTSCCCCSC---TTCCCCBCCCG---------G--GCCHHHHHHHHTTCS-CBBCHHHHHHHH
T ss_pred C----HHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCC---------C--CCCCHHHHHHCCCCC-CCCCHHHHHHHH
T ss_conf 9----588999999749986568998---75434543443---------3--467311223204776-568889985552
Q ss_pred HHHHCCCC----------CCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCCC-----C--------
Q ss_conf 99825970----------7778875518999977554454113312566789870787--156522-----1--------
Q gi|254780186|r 208 LYLAFRGY----------NSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP--GKSGVG-----G-------- 262 (311)
Q Consensus 208 a~LAn~G~----------~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP--aKSGVg-----G-------- 262 (311)
+++||+|+ ....+++++++++++.++.+|...=....+|..+.--|.+ +|+|-+ |
T Consensus 397 a~iaN~G~~~~p~~v~~i~~~~~~~~~~~~~a~~i~~~l~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~~~~g~~~~~~~~ 476 (542)
T 3equ_A 397 TALTHDGVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGRYADNKHV 476 (542)
T ss_dssp HHHHTTTEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC-----------CCE
T ss_pred HEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE
T ss_conf 32520878998765442027877532447789999989986372798187205799548999200015678855789846
Q ss_pred -EEEEEEC---CCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHH
Q ss_conf -1033437---851799875320---77898489999999999994
Q gi|254780186|r 263 -GILAIVP---SKASIAVWSPGL---DNSGNSLLGAKALELLAIRT 301 (311)
Q Consensus 263 -gilavvP---g~~gIav~SP~L---D~~GNSv~G~~~le~ls~~l 301 (311)
=.++-.| .+..++||=..- ...|.++++-.+-+.+...+
T Consensus 477 awFvGy~P~~~p~~av~V~v~~~~~~g~~G~~~AaPi~~~i~~~~l 522 (542)
T 3equ_A 477 ATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSL 522 (542)
T ss_dssp EEEEEEESSSSCCEEEEEEEESCCSSCCCHHHHTHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999998879985999999942898987567899999999999999