HHsearch results for GI: 254780186 and protein with PDBid: 3oc2_A
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=96.94 E-value=0.0014 Score=42.65 Aligned_cols=271 Identities=16% Similarity=0.104 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEEC---CC------------------CCCCC
Q ss_conf 9799999999999776079999982833205982470289980899788766---87------------------86401
Q gi|254780186|r 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVG---ES------------------EFLFS 60 (311)
Q Consensus 2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~G---D~------------------~~~Fs 60 (311)
++|+.+++..++.....+ .+- ...+.+-..+|++...- +. .-.|.
T Consensus 211 ~lQ~~ae~~l~~~~~~~~-~~~-------------g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~ 276 (564)
T 3oc2_A 211 RLQYLAHRELRNALLENG-AKA-------------GSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFE 276 (564)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCC-------------EEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBB
T ss_pred HHHHHHHHHHHHHHHHCC-CCE-------------EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 998658999998886317-750-------------269997268883887237898664321246846777577618678
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Q ss_conf 9999999999999961128999994657656772044420114898476311137999998644888-889999999999
Q gi|254780186|r 61 IQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSS-SADDAIENFLNF 139 (311)
Q Consensus 61 iqSisK~f~l~~al~~~G~~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~-~~~~~~~~i~~~ 139 (311)
--|+-|||+++.||+..--.-...+...|.....+. ......++++.++-=..|++.++=+.--. ..+=..+.+.+.
T Consensus 277 PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~g~~~l~~al~~S~Nv~f~~l~~~lg~~~~~~~ 354 (564)
T 3oc2_A 277 PGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGR--YTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSV 354 (564)
T ss_dssp CGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEETT--EEEECSCCCCSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCC--CEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 863577899999997797256426752786253587--102013234552021110121667199999998758999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 99872899862478999985112412799999998278888----99899999999873000079999999999825970
Q gi|254780186|r 140 MRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR----YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGY 215 (311)
Q Consensus 140 ~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~----~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~ 215 (311)
++++--..+..+|.. .|. .+.++ ........+-+-|- +.+|.-+||.+.+++||+|.
T Consensus 355 ~~~fG~g~~~~id~p---~~~---------------~~~~~~~~~~~~~~~~~~~~Gqg-~~vTPlqma~~~a~iAN~G~ 415 (564)
T 3oc2_A 355 MQQVGLGQDTGLGFP---GER---------------VGNLPNHRKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGK 415 (564)
T ss_dssp HHHTTTTSCCCCSCT---TCC---------------CCBCCCCSSCCHHHHHHHHTTCS-CBBCHHHHHHHHHHHHTTTE
T ss_pred HHHCCCCCCCCCCCC---CCC---------------CCCCCCCCCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCE
T ss_conf 997799877799974---221---------------57777644322332002213887-34679999998876227987
Q ss_pred C----------CCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCCC----------------CEEEEE
Q ss_conf 7----------77887551899997755445411331256678987078--7156522----------------110334
Q gi|254780186|r 216 N----------SLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF--PGKSGVG----------------GGILAI 267 (311)
Q Consensus 216 ~----------P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl--PaKSGVg----------------Ggilav 267 (311)
. ...+++++++++++.+..+|..-=-....+.-+.--|. -+|+|-+ .=.++-
T Consensus 416 ~~~p~~~~~~~~~~~~~vis~~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~~~awFvGy 495 (564)
T 3oc2_A 416 SVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGF 495 (564)
T ss_dssp ECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------CEEEEEEEE
T ss_pred EEECEEEEEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 96035787403664335689899999999997469789988864279967999862361155888762268866999999
Q ss_pred ECC---CCEEEEECCCC---CCCCCCHHHHHHHHHHH---HHHCCCCCC
Q ss_conf 378---51799875320---77898489999999999---994865648
Q gi|254780186|r 268 VPS---KASIAVWSPGL---DNSGNSLLGAKALELLA---IRTGWSIFD 307 (311)
Q Consensus 268 vPg---~~gIav~SP~L---D~~GNSv~G~~~le~ls---~~l~l~iF~ 307 (311)
.|- +..++||=.-= ...|-++++-.+-+.+. +.++.--|+
T Consensus 496 ~P~~~P~~av~V~v~~~~~~g~~Gg~~AaPi~~~im~~~l~~~~v~p~~ 544 (564)
T 3oc2_A 496 APATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDN 544 (564)
T ss_dssp ECTTSCCEEEEEEEEEC-----CHHHHTHHHHHHHHHHHHHHTTCCCCC
T ss_pred EECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8779985999999902898887655999999999999999766989876