HHsearch results for GI: 254780186 and protein with PDBid: 3oc2_A

>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=96.94  E-value=0.0014  Score=42.65  Aligned_cols=271  Identities=16%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEEC---CC------------------CCCCC
Q ss_conf             9799999999999776079999982833205982470289980899788766---87------------------86401
Q gi|254780186|r    2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVG---ES------------------EFLFS   60 (311)
Q Consensus         2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~G---D~------------------~~~Fs   60 (311)
                      ++|+.+++..++.....+ .+-             ...+.+-..+|++...-   +.                  .-.|.
T Consensus       211 ~lQ~~ae~~l~~~~~~~~-~~~-------------g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~  276 (564)
T 3oc2_A          211 RLQYLAHRELRNALLENG-AKA-------------GSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFE  276 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHT-CCC-------------EEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBB
T ss_pred             HHHHHHHHHHHHHHHHCC-CCE-------------EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             998658999998886317-750-------------269997268883887237898664321246846777577618678


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Q ss_conf             9999999999999961128999994657656772044420114898476311137999998644888-889999999999
Q gi|254780186|r   61 IQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSS-SADDAIENFLNF  139 (311)
Q Consensus        61 iqSisK~f~l~~al~~~G~~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~-~~~~~~~~i~~~  139 (311)
                      --|+-|||+++.||+..--.-...+...|.....+.  ......++++.++-=..|++.++=+.--. ..+=..+.+.+.
T Consensus       277 PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~g~~~l~~al~~S~Nv~f~~l~~~lg~~~~~~~  354 (564)
T 3oc2_A          277 PGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGR--YTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSV  354 (564)
T ss_dssp             CGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEETT--EEEECSCCCCSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCC--CEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             863577899999997797256426752786253587--102013234552021110121667199999998758999999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             99872899862478999985112412799999998278888----99899999999873000079999999999825970
Q gi|254780186|r  140 MRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR----YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGY  215 (311)
Q Consensus       140 ~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~----~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~  215 (311)
                      ++++--..+..+|..   .|.               .+.++    ........+-+-|- +.+|.-+||.+.+++||+|.
T Consensus       355 ~~~fG~g~~~~id~p---~~~---------------~~~~~~~~~~~~~~~~~~~~Gqg-~~vTPlqma~~~a~iAN~G~  415 (564)
T 3oc2_A          355 MQQVGLGQDTGLGFP---GER---------------VGNLPNHRKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGK  415 (564)
T ss_dssp             HHHTTTTSCCCCSCT---TCC---------------CCBCCCCSSCCHHHHHHHHTTCS-CBBCHHHHHHHHHHHHTTTE
T ss_pred             HHHCCCCCCCCCCCC---CCC---------------CCCCCCCCCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCE
T ss_conf             997799877799974---221---------------57777644322332002213887-34679999998876227987


Q ss_pred             C----------CCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCCC----------------CEEEEE
Q ss_conf             7----------77887551899997755445411331256678987078--7156522----------------110334
Q gi|254780186|r  216 N----------SLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF--PGKSGVG----------------GGILAI  267 (311)
Q Consensus       216 ~----------P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl--PaKSGVg----------------Ggilav  267 (311)
                      .          ...+++++++++++.+..+|..-=-....+.-+.--|.  -+|+|-+                .=.++-
T Consensus       416 ~~~p~~~~~~~~~~~~~vis~~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~~~awFvGy  495 (564)
T 3oc2_A          416 SVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGF  495 (564)
T ss_dssp             ECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------CEEEEEEEE
T ss_pred             EEECEEEEEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             96035787403664335689899999999997469789988864279967999862361155888762268866999999


Q ss_pred             ECC---CCEEEEECCCC---CCCCCCHHHHHHHHHHH---HHHCCCCCC
Q ss_conf             378---51799875320---77898489999999999---994865648
Q gi|254780186|r  268 VPS---KASIAVWSPGL---DNSGNSLLGAKALELLA---IRTGWSIFD  307 (311)
Q Consensus       268 vPg---~~gIav~SP~L---D~~GNSv~G~~~le~ls---~~l~l~iF~  307 (311)
                      .|-   +..++||=.-=   ...|-++++-.+-+.+.   +.++.--|+
T Consensus       496 ~P~~~P~~av~V~v~~~~~~g~~Gg~~AaPi~~~im~~~l~~~~v~p~~  544 (564)
T 3oc2_A          496 APATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDN  544 (564)
T ss_dssp             ECTTSCCEEEEEEEEEC-----CHHHHTHHHHHHHHHHHHHHTTCCCCC
T ss_pred             EECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8779985999999902898887655999999999999999766989876