Query gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 311 No_of_seqs 127 out of 540 Neff 5.0 Searched_HMMs 23785 Date Mon May 23 08:06:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780186.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2pby_A Glutaminase; secsg, rik 100.0 0 0 898.6 30.9 305 1-306 3-308 (308) 2 3ih8_A Salt-tolerant glutamina 100.0 0 0 897.2 31.9 306 2-310 4-311 (456) 3 1u60_A Probable glutaminase YB 100.0 0 0 898.7 29.9 303 3-308 7-310 (310) 4 1mki_A Probable glutaminase YB 100.0 0 0 885.4 30.5 304 1-306 15-330 (330) 5 3czd_A Glutaminase kidney isof 100.0 0 0 886.2 29.3 304 2-308 8-314 (315) 6 2wad_A Penicillin-binding prot 97.2 0.0016 6.6E-08 42.4 8.3 218 58-299 381-671 (680) 7 3oc2_A Penicillin-binding prot 96.9 0.0014 5.9E-08 42.7 5.7 271 2-307 211-544 (564) 8 2wuq_A BLAB, beta-lactamase re 96.3 0.023 9.5E-07 34.8 8.3 255 37-300 21-304 (318) 9 3g4p_A Beta-lactamase OXA-24; 96.0 0.03 1.3E-06 34.0 7.7 116 169-303 114-243 (244) 10 2v2f_F Penicillin binding prot 96.0 0.027 1.1E-06 34.3 7.5 111 195-307 212-372 (390) 11 2dcf_A 6-aminohexanoate-dimer 95.5 0.017 7.3E-07 35.6 5.1 109 192-302 265-390 (392) 12 3m6b_A Beta-lactamase, penicil 95.2 0.053 2.2E-06 32.4 6.7 225 37-300 16-259 (265) 13 3lo7_A PBPA, penicillin-bindin 95.2 0.069 2.9E-06 31.7 7.3 109 191-301 329-479 (483) 14 3equ_A PBP-2, penicillin-bindi 94.9 0.083 3.5E-06 31.1 6.8 217 57-301 265-522 (542) 15 1m40_A TEM-1, beta-lactamase T 94.8 0.24 1E-05 28.1 9.6 229 5-301 3-259 (263) 16 1vqq_A Saupbp2A, penicillin-bi 94.7 0.11 4.7E-06 30.3 7.2 116 183-299 489-633 (646) 17 3i7j_A Beta-lactamase MB2281C; 94.0 0.03 1.3E-06 34.0 3.1 47 31-77 8-54 (280) 18 3lez_A Beta-lactamase; antibio 93.4 0.017 6.9E-07 35.7 0.8 217 36-300 14-253 (260) 19 1qme_A Penicillin-binding prot 92.3 0.65 2.7E-05 25.3 9.0 73 188-261 399-503 (702) 20 1nrf_A Regulatory protein BLAR 92.2 0.61 2.6E-05 25.5 7.5 56 191-261 149-204 (262) 21 2olv_A Penicillin-binding prot 91.6 0.11 4.6E-06 30.4 3.1 85 193-278 440-564 (669) 22 2bg1_A PBP1B, penicillin-bindi 90.9 0.28 1.2E-05 27.7 4.6 96 195-291 262-398 (494) 23 1w7f_A Beta-lactamase; hydrola 89.7 0.064 2.7E-06 31.9 0.5 54 36-90 59-114 (307) 24 2wk0_A Beta-lactamase; hydrola 88.4 0.076 3.2E-06 31.4 0.1 56 35-91 16-73 (265) 25 2qz6_A Beta-lactamase; psychro 88.4 0.58 2.4E-05 25.6 4.6 58 2-75 3-72 (358) 26 2jch_A Penicillin-binding prot 88.0 0.61 2.6E-05 25.5 4.5 98 195-293 488-626 (720) 27 2qmi_A PBP related beta-lactam 87.9 0.44 1.9E-05 26.4 3.8 82 193-280 234-329 (447) 28 3fwm_A Penicillin-binding prot 87.6 0.61 2.6E-05 25.5 4.4 103 194-298 559-695 (751) 29 3hbr_A OXA-48; class D beta-la 87.3 1.2 5E-05 23.6 5.7 203 39-303 43-263 (265) 30 3c5a_A Class A carbapenemase K 87.0 0.18 7.6E-06 28.9 1.4 49 29-78 10-59 (264) 31 1o7e_A L2 beta lactamase; hydr 86.3 0.2 8.5E-06 28.6 1.3 225 27-300 20-270 (276) 32 3cjm_A Putative beta-lactamase 85.9 0.42 1.8E-05 26.6 2.8 43 35-78 49-92 (282) 33 1ghp_A Beta-lactamase, penicil 85.5 0.7 3E-05 25.1 3.8 223 37-301 14-254 (258) 34 2cc1_A Beta-lactamase, penicil 85.5 0.32 1.4E-05 27.3 2.0 219 36-301 16-257 (262) 35 1alq_A CP254 beta-lactamase; h 85.3 0.38 1.6E-05 26.9 2.3 182 24-256 46-240 (266) 36 1bsg_A Beta lactamase, penicil 84.0 0.27 1.1E-05 27.8 1.1 42 36-78 16-58 (266) 37 1k55_A Beta lactamase OXA-10; 84.0 0.42 1.8E-05 26.6 2.0 99 188-302 131-242 (246) 38 2j9o_A TLL2115 protein; penici 83.5 0.52 2.2E-05 26.0 2.4 206 37-301 35-267 (298) 39 1n9b_A Penicillinase, beta-lac 83.0 0.94 4E-05 24.3 3.5 41 38-78 19-60 (265) 40 1bue_A Protein (imipenem-hydro 82.8 0.84 3.5E-05 24.6 3.2 41 37-78 18-59 (265) 41 1zkj_A CMY-10, extended-spectr 82.6 1.7 7.3E-05 22.5 4.8 58 3-76 9-78 (359) 42 3p09_A Beta-lactamase; structu 82.3 0.6 2.5E-05 25.5 2.3 194 37-278 38-259 (290) 43 2p74_A Beta-lactamase CTX-M-9A 82.2 0.67 2.8E-05 25.3 2.5 211 36-301 18-259 (263) 44 1k38_A Penicillinase, beta-lac 81.3 0.6 2.5E-05 25.5 2.0 120 169-303 116-241 (254) 45 2qpn_A Beta-lactamase GES-1; A 81.2 0.42 1.8E-05 26.6 1.2 218 36-301 37-278 (287) 46 3dw0_A Class A carbapenemase K 80.9 1.3 5.5E-05 23.4 3.6 219 37-303 43-290 (294) 47 1hzo_A Beta-lactamase; mixed a 79.4 0.48 2E-05 26.2 1.0 215 38-301 21-260 (271) 48 1g6a_A Beta-lactamase PSE-4; c 78.6 0.68 2.9E-05 25.2 1.6 218 36-301 21-262 (271) 49 1e25_A Extended-spectrum beta- 78.0 0.9 3.8E-05 24.4 2.1 42 36-78 18-60 (282) 50 1w5d_A Penicillin-binding prot 77.7 2.8 0.00012 21.2 4.5 48 36-83 24-73 (462) 51 1es5_A DD-transpeptidase; peni 76.9 0.64 2.7E-05 25.4 1.0 141 38-212 10-166 (262) 52 2wzx_A Beta-lactamase; inhibit 76.0 3.6 0.00015 20.5 4.7 57 3-75 8-76 (371) 53 3hlc_A Transesterase, LOVD; al 75.6 1.6 6.5E-05 22.9 2.7 31 196-232 291-321 (432) 54 2drw_A DAA, D-amino acid amida 75.5 4 0.00017 20.2 4.8 31 194-232 243-273 (363) 55 1xkz_A Regulatory protein BLAR 75.1 0.86 3.6E-05 24.5 1.3 56 191-261 145-200 (255) 56 2ffy_A Beta-lactamase; AMPC, d 75.0 2.6 0.00011 21.5 3.7 30 192-223 216-245 (358) 57 1ci9_A ESTB, protein (carboxyl 74.7 3.8 0.00016 20.4 4.5 56 4-76 19-88 (392) 58 2ex2_A Penicillin-binding prot 74.3 1.7 7E-05 22.7 2.6 54 30-83 8-64 (458) 59 1w79_A D-alanyl-D-alanine carb 72.5 3.4 0.00014 20.6 3.8 48 36-83 21-70 (489) 60 1ei5_A D-aminopeptidase, DAP; 71.3 2.1 9E-05 22.0 2.6 36 54-89 53-94 (520) 61 2iwb_A Methicillin resistance 69.8 3.3 0.00014 20.7 3.3 97 191-303 138-245 (246) 62 3a3d_A PBP4, penicillin-bindin 67.3 2.9 0.00012 21.1 2.6 47 37-83 16-64 (453) 63 2bcf_A Probable D-alanyl-D-ala 66.3 4.1 0.00017 20.1 3.2 40 39-78 21-61 (276) 64 1yqs_A D-alanyl-D-alanine carb 66.1 3.1 0.00013 20.9 2.5 78 193-278 237-323 (349) 65 3bux_B E3 ubiquitin-protein li 64.6 4.4 0.00018 19.9 3.0 116 135-280 163-289 (329) 66 3ozh_A Beta-lactamase/D-alanin 62.7 8.1 0.00034 18.2 4.5 86 193-280 226-329 (351) 67 3isg_A Penicillinase, beta-lac 61.7 8.4 0.00035 18.1 14.5 102 186-302 133-250 (251) 68 3op0_A Signal transduction pro 51.3 9.3 0.00039 17.8 2.9 21 137-158 150-170 (323) 69 3hun_A Penicillin-binding prot 50.1 13 0.00055 16.9 3.5 40 38-77 72-111 (453) 70 1tvf_A PBP4, penicillin bindin 49.6 13 0.00055 16.8 3.5 39 39-77 37-75 (369) 71 3ita_A D-alanyl-D-alanine carb 48.8 14 0.00057 16.8 3.4 41 38-78 15-55 (352) 72 1z6f_A Penicillin-binding prot 48.4 13 0.00056 16.8 3.3 39 39-77 20-58 (363) 73 1fbv_A Signal transduction pro 47.8 12 0.00052 17.0 3.0 116 135-280 139-265 (388) 74 3a3j_A PBP5; penicillin bindin 42.7 17 0.00071 16.1 3.4 39 39-77 12-50 (344) 75 3mfd_A D-alanyl-D-alanine carb 40.8 18 0.00075 16.0 3.2 40 39-78 12-51 (334) 76 1xp4_A D-alanyl-D-alanine carb 38.1 17 0.00073 16.0 2.6 39 39-77 17-55 (379) 77 2ciw_A Chloroperoxidase; oxido 27.0 16 0.00065 16.4 0.8 12 84-95 83-94 (299) 78 2km6_A Nacht, LRR and PYD doma 25.5 32 0.0013 14.3 4.4 73 62-143 4-80 (106) 79 1chk_A Chitosanase, endochitos 25.4 21 0.0009 15.5 1.3 43 116-158 142-184 (238) 80 1y9j_A SEC1 family domain cont 20.1 18 0.00075 16.0 0.0 12 107-118 86-97 (159) No 1 >2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426} Probab=100.00 E-value=0 Score=898.59 Aligned_cols=305 Identities=38% Similarity=0.647 Sum_probs=299.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-H Q ss_conf 997999999999997760799999828332059824702899808997887668786401999999999999996112-8 Q gi|254780186|r 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-E 79 (311) Q Consensus 1 md~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~ 79 (311) +.-|+.|++|++++++..++||||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| | T Consensus 3 ~~~qe~L~~~~~e~~~~~~~GkvAdYIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~~~~al~~~G~~ 82 (308) T 2pby_A 3 VYNQEELVRFVEEAKQYARYGKVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRGED 82 (308) T ss_dssp CCCHHHHHHHHHHHHTTGGGCBCCCSSGGGGGSCTTCCEEEEEETTTEEEEEESTTCCEECTTHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHCHH T ss_conf 66499999999999877589988760587607890784899993799789547888867689999999999999987989 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 99999465765677204442011489847631113799999864488888999999999999872899862478999985 Q gi|254780186|r 80 EIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSE 159 (311) Q Consensus 80 ~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE 159 (311) +||+|||+||||+||||+.+||.++|+|||||||||||++||||++ .+.++||+++++|+++++|++++.+|++||+|| T Consensus 83 ~V~~~VG~ePSg~~FNsl~~le~~~g~P~NPmINaGAI~~~sll~~-~~~~~r~~~il~~~~~lag~~~~~~d~~v~~SE 161 (308) T 2pby_A 83 EVFHKVGMEPTDYPFHSIAKLEEKPAKPLNPMINAGALVVTSMIQG-GSVSERLERLLAFVRRLAGNERISYSDEVARSE 161 (308) T ss_dssp HHHHHBCSCC----------------CCBCTTSHHHHHHHHTTSCS-SSHHHHHHHHHHHHHHHHTCTTCCBCHHHHHHH T ss_pred HHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 9999857687879971455410238997896442018898660036-883789999999999984899764369999876 Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHC Q ss_conf 11241279999999827888899899999999873000079999999999825970777887551899997755445411 Q gi|254780186|r 160 IETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 (311) Q Consensus 160 ~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~Tc 239 (311) ++|++|||||||+||++|+|++||+++||+||||||+++||+|||+||+||||+|+||+|++||++++++|+++++|+|| T Consensus 162 ~~t~~rN~Ala~~Lk~~g~i~~d~~~~Ld~Yf~~Csi~~t~~dLA~~aatLAn~G~~P~tg~~vi~~~~~r~v~s~M~tc 241 (308) T 2pby_A 162 FETAFLNRSLCYFLKQHRIIDEDVEELMELYTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTC 241 (308) T ss_dssp HHHCHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHTBEECHHHHHHHHHHHHTTTBCTTTCCBSSCHHHHHHHHHHHHHS T ss_pred HHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHC T ss_conf 30639999999999857997889999999999983852249999999999967894888777336889999999999755 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 3312566789870787156522110334378517998753207789848999999999999486564 Q gi|254780186|r 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIF 306 (311) Q Consensus 240 GmYd~SG~fa~~VGlPaKSGVgGgilavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF 306 (311) ||||+||+|||+||||||||||||||+||||++|||||||+||++|||+||+++||.|+++|+||+| T Consensus 242 GmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~~~l~iF 308 (308) T 2pby_A 242 GMYNSSGEFAIKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTGVKLLERLSKTYSLSIF 308 (308) T ss_dssp SSTTCHHHHHHHTCSCEEECTTSEEEEEETTTEEEEEECCCBCTTSSBHHHHHHHHHHHHHHTCCCC T ss_pred CCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 8842302379980862112577438999579608999898868888869999999999998487769 No 2 >3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A Probab=100.00 E-value=0 Score=897.17 Aligned_cols=306 Identities=32% Similarity=0.553 Sum_probs=296.8 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HH Q ss_conf 97999999999997760799999828332059824702899808997887668786401999999999999996112-89 Q gi|254780186|r 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EE 80 (311) Q Consensus 2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~ 80 (311) .++++|+++++++++. .+|+||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| ++ T Consensus 4 pi~d~L~~i~~~~~~~-~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsIQSiSKpf~~~lAl~~~G~~~ 82 (456) T 3ih8_A 4 PIPDYLASLVTELGAV-NPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRGFAA 82 (456) T ss_dssp HHHHHHHHHHHHHHTC-CCSBCCTTSHHHHSSCSCCCEEEEECSSSCEEEEESTTCCEECGGGGHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCC-CCCCCCCCCHHHCCCCHHHCEEEEEECCCCEEECCCCCCCEECHHHHHHHHHHHHHHHHCHHH T ss_conf 3599999999962338-899788715775088927828999925997895678899671003899999999999879899 Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 9999465765677204442011489847631113799999864488-888999999999999872899862478999985 Q gi|254780186|r 81 IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGS-SSADDAIENFLNFMRGIAGDASIHIDSVVANSE 159 (311) Q Consensus 81 V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~-~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE 159 (311) ||+|||+||||++|||| +||.++|+|+|||||||||++||||.++ .+.++||++|++++++++| +++.+|++||+|| T Consensus 83 V~~~VG~EPSG~~FNsi-~Le~~~g~P~NPmINAGAI~~~sll~~~~~~~~er~~~i~~~~~~~ag-~~l~~d~~v~~SE 160 (456) T 3ih8_A 83 VDRQVGLNPSGEAFNEL-SLEAESHRPDNAMINAGALAVHQLLVGPEASRKERLDRAVEIMSLLAG-RRLSVDWETYESE 160 (456) T ss_dssp HHTTCCCCCCCSSCBTH-HHHTTTTCCSCTTSHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHHHHT-SCCCBCHHHHHHH T ss_pred HHHHHCCCCCCCCCCCE-EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHH T ss_conf 99872889899997310-004568998897465449999998716899999999999999998469-9876488999998 Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHC Q ss_conf 11241279999999827888899899999999873000079999999999825970777887551899997755445411 Q gi|254780186|r 160 IETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 (311) Q Consensus 160 ~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~Tc 239 (311) ++|++||||||||||++|+|++||+++||+|||||||+|||+|||+||+||||+|+||+||+|+++++++|+++++|+|| T Consensus 161 ~~t~~rN~AlAy~Lks~g~i~~d~~~~Ld~Yf~qCSi~vt~~dLA~maatLAN~Gv~P~Tg~~vl~~~~~r~vlsvM~Tc 240 (456) T 3ih8_A 161 MAVSDRNLSLAHMLRSYGVLQDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSS 240 (456) T ss_dssp HTTCHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHTBEECHHHHHHHHHHHHTTSBCTTTCCBCSCHHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHC T ss_conf 62429999999999978998998788999999983850669999999999967995999888656899999999998536 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 33125667898707871565221103343785179987532077898489999999999994865648666 Q gi|254780186|r 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIFDPSV 310 (311) Q Consensus 240 GmYd~SG~fa~~VGlPaKSGVgGgilavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF~~~~ 310 (311) ||||+||+|+|+||||||||||||||+||||++|||||||+||++||||||+++||.||++|+||+|++.. T Consensus 241 GmYD~SG~fa~~VGlPaKSGVgGGI~avvPg~~GIav~SP~LD~~GNSvrG~~~le~ls~~~~Lh~f~~~~ 311 (456) T 3ih8_A 241 GMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSEDFRLHLMDGDS 311 (456) T ss_dssp TTGGGHHHHHHHTCCCEEECTTSEEEEEETTTEEEEEECCCBCTTSSBHHHHHHHHHHHHHHTCCTTCCCC T ss_pred CCCCCHHHHHHHHCCCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 88622344899808631016871499992896389998887687888799999999999983966247987 No 3 >1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2 Probab=100.00 E-value=0 Score=898.66 Aligned_cols=303 Identities=37% Similarity=0.618 Sum_probs=296.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHH Q ss_conf 7999999999997760799999828332059824702899808997887668786401999999999999996112-899 Q gi|254780186|r 3 LKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEI 81 (311) Q Consensus 3 ~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V 81 (311) ++++|+++|+++|+. .+||||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| |+| T Consensus 7 ~~~~l~~~~~~~~~~-~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~G~~~V 85 (310) T 1u60_A 7 LQQAVDQAYTQFHSL-NGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAV 85 (310) T ss_dssp HHHHHHHHHHHHTTC-CCCBCCCSSHHHHTSCTTCCEEEEEETTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHCHHHH T ss_pred HHHHHHHHHHHHCCC-CCCCCCCCCHHHHCCCCHHEEEEEEECCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCHHHH T ss_conf 999999999982648-8997988057761889157499999469908963798987708999999999999976598999 Q ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC Q ss_conf 99946576567720444201148984763111379999986448888899999999999987289986247899998511 Q gi|254780186|r 82 WKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIE 161 (311) Q Consensus 82 ~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~ 161 (311) |+|||+||||++|||+++||.++|+|||||||||||++||||+++ ..++||+++++|+++++| +++.+|++||+||++ T Consensus 86 ~~~VG~EPSg~~FNsl~~le~~~g~P~NPmINAGAI~~~sli~~~-~~~~r~~~i~~~~~~~~g-~~l~~d~~v~~SE~~ 163 (310) T 1u60_A 86 QDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAE-NVEQRWQRILHIQQQLAG-EQVALSDEVNQSEQT 163 (310) T ss_dssp HHHTCSCCCSSCTTCHHHHHHTTTCCCCTTSHHHHHHHHHHSCCS-SHHHHHHHHHHHHHHHHC-TTCEECHHHHHHHHT T ss_pred HHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH T ss_conf 998576877788733665531589978953010088988864168-817999999999999659-987668899999871 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCC Q ss_conf 24127999999982788889989999999987300007999999999982597077788755189999775544541133 Q gi|254780186|r 162 TGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGH 241 (311) Q Consensus 162 t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGm 241 (311) |++||||||||||++|+|++||+++||+||||||+++||+|||+||+||||+|+||+|++|+++++++|+++++|+|||| T Consensus 164 t~~rN~Alay~lk~~g~~~~d~~~~Ld~Yf~~CSi~vt~~dLA~~aatLAN~Gv~P~t~~~v~~~~~~r~v~s~M~tcGm 243 (310) T 1u60_A 164 TNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGL 243 (310) T ss_dssp TCHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTEEECHHHHHHHHHHHHTTSEETTTTEECSCGGGHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCC T ss_conf 53999999999997799888999999999998524600999999999997699389988810788999999999864587 Q ss_pred CHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 1256678987078715652211033437851799875320778984899999999999948656486 Q gi|254780186|r 242 YDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIFDP 308 (311) Q Consensus 242 Yd~SG~fa~~VGlPaKSGVgGgilavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF~~ 308 (311) ||+||+|||+||||||||||||||+||||++|||||||+||++|||+||+++||.|+++|+||+|+. T Consensus 244 Yd~SG~fa~~VGlPaKSGVgGgI~avvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~~~l~iF~g 310 (310) T 1u60_A 244 YGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVFKG 310 (310) T ss_dssp GGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEEEECSCBCTTSCBHHHHHHHHHHHHHHTCCTTCC T ss_pred CCCHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 4246789999097611478843899948960899989887988887999999999999838332489 No 4 >1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* Probab=100.00 E-value=0 Score=885.42 Aligned_cols=304 Identities=36% Similarity=0.577 Sum_probs=295.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-H Q ss_conf 997999999999997760799999828332059824702899808997887668786401999999999999996112-8 Q gi|254780186|r 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-E 79 (311) Q Consensus 1 md~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~ 79 (311) ||.+..|++|++++|+++.+||||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| | T Consensus 15 ~~~~~~L~~~~~~~~~~~~~GkvA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiQSisK~f~l~~al~~~G~~ 94 (330) T 1mki_A 15 INPALQLHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIP 94 (330) T ss_dssp -CHHHHHHHHHHHHGGGGGGCBCCC---------TTCCEEEEECTTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHCHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHCHH T ss_conf 36899999999997566069988870677618890785899993799589668858865479989999999999987979 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 99999465765677204442011-48984763111379999986448888899999999999987289986247899998 Q gi|254780186|r 80 EIWKRVGREPSGSSFDSIVQLEN-ENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANS 158 (311) Q Consensus 80 ~V~~~VG~ePSg~~FNSi~~Le~-~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~S 158 (311) +||+|||+||||+||||+++||. ++|+|||||||||||++||+|.++ ..++||+++++++++++| +++.+|++||+| T Consensus 95 ~V~~~VG~EPSg~~FNSi~~Le~~~~g~P~NPmINAGAI~~~sll~~~-~~~~r~~~i~~~~~~~~g-~~l~~d~~v~~S 172 (330) T 1mki_A 95 YVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILPGE-SAYEKLEFLYSVMETLIG-KRPRIHEEVFRS 172 (330) T ss_dssp HHHTTCCCCCCSSCTTCCHHHHHSTTCCCSCSSSHHHHHHHHHHSSSS-SHHHHHHHHHHHHHHHHS-SCCCBCHHHHHH T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC-CCCCCCHHHHHH T ss_conf 999984779889997518887602689978965561199998862289-868999999999999649-987657899999 Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHH Q ss_conf 51124127999999982788889989999999987300007999999999982597077788755189999775544541 Q gi|254780186|r 159 EIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLT 238 (311) Q Consensus 159 E~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~T 238 (311) |++|++||||||||||++|+|++||+++||+||||||+++||+|||+||+||||+|+||+|++||++++++|+++++|+| T Consensus 173 E~~t~~rN~AlAy~Lk~~g~~~~dv~~~Ld~Yf~~Csi~vt~~dLA~~aa~LAN~G~~P~t~~~vl~~~~~r~v~s~M~T 252 (330) T 1mki_A 173 EWETAHRNRALAYYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLT 252 (330) T ss_dssp HHHHCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHTBEECHHHHHHHHHHHHTTTEETTTTEECSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHH T ss_conf 88524999999999997899788999999999998372257999999999997799589988831689999999999875 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC----------CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 133125667898707871565221103343785----------17998753207789848999999999999486564 Q gi|254780186|r 239 CGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSK----------ASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIF 306 (311) Q Consensus 239 cGmYd~SG~fa~~VGlPaKSGVgGgilavvPg~----------~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF 306 (311) |||||+||+|||+||||||||||||||+||||+ ||||||||+||++|||+||+++||.||++|+||+| T Consensus 253 cGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~ggi~~~vp~~~gIav~SP~LD~~GNSv~G~~~le~ls~~~~l~iF 330 (330) T 1mki_A 253 CGMYNASGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF 330 (330) T ss_dssp HTTGGGHHHHHHHTCSCEEECTTSEEEEEECTTTTCSSTTTTCEEEEEECSCBCTTSSBHHHHHHHHHHHHHHTCCCC T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 685022343899838650026776059996786664544677606999888768888859999999999998587769 No 5 >3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens} Probab=100.00 E-value=0 Score=886.15 Aligned_cols=304 Identities=36% Similarity=0.618 Sum_probs=295.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HH Q ss_conf 97999999999997760799999828332059824702899808997887668786401999999999999996112-89 Q gi|254780186|r 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EE 80 (311) Q Consensus 2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~ 80 (311) ++++.|+++++++|+. .+||||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| |+ T Consensus 8 ~f~~~l~~i~~~~~~~-~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~lal~~~G~~~ 86 (315) T 3czd_A 8 SFTSHIDELYESAKKQ-SGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 86 (315) T ss_dssp HHHHHHHHHHHHHHTC-CCCEECCSSHHHHTSCTTCCEEEEEETTSCEEEEESTTSCEECGGGGHHHHHHHHHHHHCHHH T ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCCHHHCCCCHHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHCHHH T ss_conf 9999999999996125-799778705664078937818999917995884578588633899999999999998768799 Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 99994657656772044420114898476311137999998644888889999999999998728998624789999851 Q gi|254780186|r 81 IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEI 160 (311) Q Consensus 81 V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~ 160 (311) ||+|||+||||+||||+.++| .++|||||||||||++||||.++.+.++||+++++|+++++|++.+.+|++||+||+ T Consensus 87 V~~~VG~EPSg~~FNsl~~~e--~~~P~NPmINaGAI~~~sll~~~~~~~~r~~~il~~~~~lag~~~i~~d~~v~~SE~ 164 (315) T 3czd_A 87 VHRYVGKEPSGLRFNKLFLNE--DDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSER 164 (315) T ss_dssp HHTTSCSSCCSCC---CCCCT--TSSCSCTTSHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTTTCCCEECHHHHHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 999857687888998020003--589999651368999998760689869999999999999829997664699998853 Q ss_pred CCCHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHH Q ss_conf 124127999999982788889--989999999987300007999999999982597077788755189999775544541 Q gi|254780186|r 161 ETGYRNFALANFVRSYGNIRY--KIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLT 238 (311) Q Consensus 161 ~t~~rN~ala~~Lk~~g~~~~--dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~T 238 (311) +|++|||||||+||++|+|++ |++++||+||||||+++||+|||+||+||||+|+||+|++|+++++++|+++++|+| T Consensus 165 ~t~~rN~alA~~lk~~g~~~~~~D~~~~Ld~Yf~~CSi~vt~~dlA~~aa~LAn~G~~P~tg~~v~~~~~~~~v~s~M~t 244 (315) T 3czd_A 165 ESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHS 244 (315) T ss_dssp HHCHHHHHHHHHHHHTTCSCTTCCHHHHHHHHHHHHTEEECHHHHHHHHHHHHTTTBCTTTCCBCSCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHH T ss_conf 26399999999999679989999779999999998432357999999999997499589989974589999999999875 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 1331256678987078715652211033437851799875320778984899999999999948656486 Q gi|254780186|r 239 CGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIFDP 308 (311) Q Consensus 239 cGmYd~SG~fa~~VGlPaKSGVgGgilavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF~~ 308 (311) |||||+||+|+|+||||||||||||||+||||++|||||||+||++||||||+++||.|+++|+||+||. T Consensus 245 cGmYd~SG~fa~~VGlPaKSGV~GgIlavvPg~~gIav~SP~LD~~GNSv~G~~~~~~ls~~~~l~~Fd~ 314 (315) T 3czd_A 245 CGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDN 314 (315) T ss_dssp HTTGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEEEECSEECTTSSBHHHHHHHHHHHHHHCCCTTCC T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 4998547789999088201476653899948970899989886888886999999999999829321256 No 6 >2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A Probab=97.23 E-value=0.0016 Score=42.36 Aligned_cols=218 Identities=18% Similarity=0.160 Sum_probs=114.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCC----CCCCCHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHC Q ss_conf 40199999999999999611289999946576----567720444201148984763111379999---------98644 Q gi|254780186|r 58 LFSIQSISKVFLLTIALRKFDEEIWKRVGREP----SGSSFDSIVQLENENGIPRNPFVNAGAIVV---------SDAVL 124 (311) Q Consensus 58 ~FsiqSisK~f~l~~al~~~G~~V~~~VG~eP----Sg~~FNSi~~Le~~~g~P~NPmiNAGAI~~---------~sli~ 124 (311) .|.--|+-|||+++.||+..--.--+.+...| .+.+++.- ...++.+.++-=..||+- +..+. T Consensus 381 ~~~PGStfKp~~~~aALe~g~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~g~itl~~Al~~S~N~~~~~~a~~~~ 456 (680) T 2wad_A 381 VFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSW----YKLAYGSFPITAVEALEYSSNAYVVQTALGIM 456 (680) T ss_dssp CBCCGGGGHHHHHHHHHHTTSCCSSCCEEECCBCBTTSCCBCCT----TTTTTCSEEECHHHHHHHTCHHHHHHHHHHHT T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC T ss_conf 35787521678899999708999873571378422368864210----13677887720563645075599999998750 Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC--CCHHHHHHHHHH Q ss_conf ----------88888999999999999872899862478999985112412799999998278888--998999999998 Q gi|254780186|r 125 ----------GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR--YKIEDVLKFYFH 192 (311) Q Consensus 125 ----------~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~--~dv~~~Ld~Yf~ 192 (311) +....+..++++.++++++--+.+..+|- -.|. .|.++ .+..+.+..-+- T Consensus 457 ~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~l---p~E~---------------~G~~~~~~~~~~~~~~~~G 518 (680) T 2wad_A 457 GQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDL---PDES---------------TGLVPKEYNFANFITNAFG 518 (680) T ss_dssp TCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCSS---SCCC---------------CCBCCSSCCHHHHHHHTTT T ss_pred CCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCCCCCCCC T ss_conf 244540333042678765468899999709986568866---5445---------------6767752333322322357 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCC--CCC-------------------------CCEECCHHHHHHHHHHHHHC--CCC- Q ss_conf 730000799999999998259707--778-------------------------87551899997755445411--331- Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYN--SLT-------------------------NQSVISPLQSRCVNAVMLTC--GHY- 242 (311) Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~--P~t-------------------------~~~vi~~~~~~~v~s~M~Tc--GmY- 242 (311) | .+.+|.-+||.+.+++||+|+- |.- .+++++++++..+...|... |.. T Consensus 519 q-g~~vTPlqma~aya~iaN~G~~~~P~~v~~I~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~m~~Vv~gt~~ 597 (680) T 2wad_A 519 Q-FDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSP 597 (680) T ss_dssp S-SSBBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECTTSSEEEEEEECCCCEEEECSSCHHHHHHHHHHHHHHHHCCST T ss_pred C-CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 7-677899999999999975975972089998744777555673012368752465679999999999999998728786 Q ss_pred HHHHHHHH-H--HCCCCCCCCC------C------EEEEEECC---CCEEEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf 25667898-7--0787156522------1------10334378---51799875320778984899999999999 Q gi|254780186|r 243 DHSGDFAY-R--VGFPGKSGVG------G------GILAIVPS---KASIAVWSPGLDNSGNSLLGAKALELLAI 299 (311) Q Consensus 243 d~SG~fa~-~--VGlPaKSGVg------G------gilavvPg---~~gIav~SP~LD~~GNSv~G~~~le~ls~ 299 (311) ..+|.-.. . +-+-+|+|-+ | =.++-.|- +..|+||-|.=...|.++++ .+.+.+.+ T Consensus 598 ~gt~~~~~~~~~~~vaGKTGTAq~~~~~~~~~~~awFvGy~P~~~P~~~v~V~v~~~~~~g~~~A~-~i~~~i~~ 671 (680) T 2wad_A 598 LTTGRAFSDGATVSISGKTGTGESYVAGGQEATNTNAVAYAPTENPQIAVAVVFPHNTNLTKNVGP-AIARDIIN 671 (680) T ss_dssp TCCCGGGTTTCSSCCEEEECC------------CCCEEEEESTTSCCEEEEEECTTCCCCSCCHHH-HHHHHHHH T ss_pred CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHH-HHHHHHHH T ss_conf 634563215799889998434352579998667089999997689869999999689953888999-99999999 No 7 >3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A* Probab=96.94 E-value=0.0014 Score=42.65 Aligned_cols=271 Identities=16% Similarity=0.104 Sum_probs=126.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEEC---CC------------------CCCCC Q ss_conf 9799999999999776079999982833205982470289980899788766---87------------------86401 Q gi|254780186|r 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVG---ES------------------EFLFS 60 (311) Q Consensus 2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~G---D~------------------~~~Fs 60 (311) ++|+.+++..++.....+ .+- ...+.+-..+|++...- +. .-.|. T Consensus 211 ~lQ~~ae~~l~~~~~~~~-~~~-------------g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~ 276 (564) T 3oc2_A 211 RLQYLAHRELRNALLENG-AKA-------------GSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFE 276 (564) T ss_dssp HHHHHHHHHHHHHHHHHT-CCC-------------EEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBB T ss_pred HHHHHHHHHHHHHHHHCC-CCE-------------EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 998658999998886317-750-------------269997268883887237898664321246846777577618678 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHH Q ss_conf 9999999999999961128999994657656772044420114898476311137999998644888-889999999999 Q gi|254780186|r 61 IQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSS-SADDAIENFLNF 139 (311) Q Consensus 61 iqSisK~f~l~~al~~~G~~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~-~~~~~~~~i~~~ 139 (311) --|+-|||+++.||+..--.-...+...|.....+. ......++++.++-=..|++.++=+.--. ..+=..+.+.+. T Consensus 277 PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~g~~~l~~al~~S~Nv~f~~l~~~lg~~~~~~~ 354 (564) T 3oc2_A 277 PGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGR--YTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSV 354 (564) T ss_dssp CGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEETT--EEEECSCCCCSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCC--CEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 863577899999997797256426752786253587--102013234552021110121667199999998758999999 Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC Q ss_conf 99872899862478999985112412799999998278888----99899999999873000079999999999825970 Q gi|254780186|r 140 MRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR----YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGY 215 (311) Q Consensus 140 ~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~----~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~ 215 (311) ++++--..+..+|.. .|. .+.++ ........+-+-|- +.+|.-+||.+.+++||+|. T Consensus 355 ~~~fG~g~~~~id~p---~~~---------------~~~~~~~~~~~~~~~~~~~~Gqg-~~vTPlqma~~~a~iAN~G~ 415 (564) T 3oc2_A 355 MQQVGLGQDTGLGFP---GER---------------VGNLPNHRKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGK 415 (564) T ss_dssp HHHTTTTSCCCCSCT---TCC---------------CCBCCCCSSCCHHHHHHHHTTCS-CBBCHHHHHHHHHHHHTTTE T ss_pred HHHCCCCCCCCCCCC---CCC---------------CCCCCCCCCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCE T ss_conf 997799877799974---221---------------57777644322332002213887-34679999998876227987 Q ss_pred C----------CCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCCC----------------CEEEEE Q ss_conf 7----------77887551899997755445411331256678987078--7156522----------------110334 Q gi|254780186|r 216 N----------SLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF--PGKSGVG----------------GGILAI 267 (311) Q Consensus 216 ~----------P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl--PaKSGVg----------------Ggilav 267 (311) . ...+++++++++++.+..+|..-=-....+.-+.--|. -+|+|-+ .=.++- T Consensus 416 ~~~p~~~~~~~~~~~~~vis~~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~~~awFvGy 495 (564) T 3oc2_A 416 SVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGF 495 (564) T ss_dssp ECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------CEEEEEEEE T ss_pred EEECEEEEEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 96035787403664335689899999999997469789988864279967999862361155888762268866999999 Q ss_pred ECC---CCEEEEECCCC---CCCCCCHHHHHHHHHHH---HHHCCCCCC Q ss_conf 378---51799875320---77898489999999999---994865648 Q gi|254780186|r 268 VPS---KASIAVWSPGL---DNSGNSLLGAKALELLA---IRTGWSIFD 307 (311) Q Consensus 268 vPg---~~gIav~SP~L---D~~GNSv~G~~~le~ls---~~l~l~iF~ 307 (311) .|- +..++||=.-= ...|-++++-.+-+.+. +.++.--|+ T Consensus 496 ~P~~~P~~av~V~v~~~~~~g~~Gg~~AaPi~~~im~~~l~~~~v~p~~ 544 (564) T 3oc2_A 496 APATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDN 544 (564) T ss_dssp ECTTSCCEEEEEEEEEC-----CHHHHTHHHHHHHHHHHHHHTTCCCCC T ss_pred EECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 8779985999999902898887655999999999999999766989876 No 8 >2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi} Probab=96.29 E-value=0.023 Score=34.80 Aligned_cols=255 Identities=9% Similarity=0.012 Sum_probs=117.9 Q ss_pred HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHCCCCCC---CCCHHHHHHHCCCCCCCC Q ss_conf 7028998089-978876687864019999999999999961128---999994657656---772044420114898476 Q gi|254780186|r 37 HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE---EIWKRVGREPSG---SSFDSIVQLENENGIPRN 109 (311) Q Consensus 37 ~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~---~V~~~VG~ePSg---~~FNSi~~Le~~~g~P~N 109 (311) ..|+.|.+++ |+++.. +.+.+|+.-|+.|+|++..+|++..+ ..-+.|...+.. ........ ...+.+.. T Consensus 21 ~~~~~V~D~~tG~~la~-n~d~~~~pgSt~K~~ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~s 97 (318) T 2wuq_A 21 TGSFLVRDLYTGEELGI-DPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSR--FRHPARVA 97 (318) T ss_dssp EEEEEEEETTTCCEEEE-STTCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCGGGG--CSSCEEEE T ss_pred EEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCC T ss_conf 49999999989988998-8997373797999999999998765499787545664035313799740135--78887403 Q ss_pred CCHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 311137999998644888889------9999999999987289986247899-998511241279999999827888899 Q gi|254780186|r 110 PFVNAGAIVVSDAVLGSSSAD------DAIENFLNFMRGIAGDASIHIDSVV-ANSEIETGYRNFALANFVRSYGNIRYK 182 (311) Q Consensus 110 PmiNAGAI~~~sli~~~~~~~------~~~~~i~~~~~~lag~~~i~~d~~v-~~SE~~t~~rN~ala~~Lk~~g~~~~d 182 (311) -.-+....+........ ...+.+..+++++ |-....++... ..+......-+..-.+........... T Consensus 98 ----~~~~~~~~~~~S~n~a~~~l~~~~g~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (318) T 2wuq_A 98 ----VDDLLYLSTSVSDGTASDALFEITPPAQVEQMVREW-GFRDLTVRHSMRELSETPAERFESADAHLAHALAISAGT 172 (318) T ss_dssp ----HHHHHHHHHHSCCHHHHHHHHHHSCHHHHHHHHHHT-TCCSCCCCCCTTC-------------------------- T ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC T ss_conf ----999999999827722667788752999875478870-887644656665456665555552024566642365657 Q ss_pred HHHHHHH--HHHHHHHHCCHHHHHHHHHHHHCCCCCCCC---CCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHH-C--C Q ss_conf 8999999--998730000799999999998259707778---875518999977554454113312566789870-7--8 Q gi|254780186|r 183 IEDVLKF--YFHQCSLMMNCVQLAKSGLYLAFRGYNSLT---NQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRV-G--F 254 (311) Q Consensus 183 v~~~Ld~--Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t---~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~V-G--l 254 (311) +...... ........++..+++.+...+.+....+.. ..++++++....+..+|...--. ..+..++.. | + T Consensus 173 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~-g~~~~~~~~~g~~v 251 (318) T 2wuq_A 173 SGRGHRVPQLDVARANTGTARAFVDLLEALWAPVLTGPRPGRTSRALPPEPAARLRELMAANLLR-HRLAPDFASDAATW 251 (318) T ss_dssp ----CCSGGGCTTTSCEECHHHHHHHHHHHHGGGCCCC-------CCCHHHHHHHHHHHHTCCCC-SSSHHHHCBTTEEE T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCEE T ss_conf 67899999998528830348999999975025654556654334567999999999998734648-87201347899889 Q ss_pred CCCCCCCCEE---EEEE--C--CCCEEEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 7156522110---3343--7--8517998753207789848999999999999 Q gi|254780186|r 255 PGKSGVGGGI---LAIV--P--SKASIAVWSPGLDNSGNSLLGAKALELLAIR 300 (311) Q Consensus 255 PaKSGVgGgi---lavv--P--g~~gIav~SP~LD~~GNSv~G~~~le~ls~~ 300 (311) =+|+|-..+. .+++ | .+..++||...-...+...++.+++..+++. T Consensus 252 agKTGT~~~~~~~~~~~~~~d~~~~~v~V~~~~~~~~~~~~~~~~~~~~iaR~ 304 (318) T 2wuq_A 252 SSKTGTLLNLRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALMAQVARR 304 (318) T ss_dssp EEEEEEETTEEEEEEEEEETTSCEEEEEEEEEESSCCSCCHHHHHHHHHHHHH T ss_pred EEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 99802577831669999968989499999980698753114589999999999 No 9 >3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* Probab=95.99 E-value=0.03 Score=34.00 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=68.0 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 99999827888899899999999873000079999999999825970777887551899997755445411331256678 Q gi|254780186|r 169 LANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDF 248 (311) Q Consensus 169 la~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~f 248 (311) +..+++.+|.-..|+...++.+.-+=++.+|..+++.+.++|||+|. .++++.++.+..+|..-- ..| T Consensus 114 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~iTp~q~a~~~~~lan~g~-------~~~~~~~~~v~~~m~~~~---~~g-- 181 (244) T 3g4p_A 114 MQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRL-------PFKLETQEEVKKMLLIKE---VNG-- 181 (244) T ss_dssp HHHHHHHHTCTTCCCTTCTTTHHHHSSCCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHTTEEEE---ETT-- T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHH---HHC-- T ss_conf 89999978999988986555611078701869999999999970980-------558558999999999755---432-- Q ss_pred HHHHCCCCCCCCCC-------EEEEEEC----CCCEEEEECCCCCCCC---CCHHHHHHHHHHHHHHCC Q ss_conf 98707871565221-------1033437----8517998753207789---848999999999999486 Q gi|254780186|r 249 AYRVGFPGKSGVGG-------GILAIVP----SKASIAVWSPGLDNSG---NSLLGAKALELLAIRTGW 303 (311) Q Consensus 249 a~~VGlPaKSGVgG-------gilavvP----g~~gIav~SP~LD~~G---NSv~G~~~le~ls~~l~l 303 (311) ..+=+|+|.+= =.++-+| .+..++++ +|... .+++ ....+.+-++++. T Consensus 182 ---~~~aGKTGT~~~~~~~~~WFvG~~~~~~~~~~~~~v~---~~~~~~~~~~~a-~~I~~~il~~lg~ 243 (244) T 3g4p_A 182 ---SKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLN---LEMKEGMSGSIR-NEITYKSLENLGI 243 (244) T ss_dssp ---EEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEE---EEECTTCCTHHH-HHHHHHHHHHTTC T ss_pred ---EEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEE---EECCCCCCHHHH-HHHHHHHHHHCCC T ss_conf ---2237858711268998789999768698988999999---637986655999-9999999998289 No 10 >2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B* Probab=95.99 E-value=0.027 Score=34.34 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=70.1 Q ss_pred HHHCCHHHHHHHHHHHHCCCCC--C-----------------CCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC- Q ss_conf 0000799999999998259707--7-----------------7887551899997755445411331256678987078- Q gi|254780186|r 195 SLMMNCVQLAKSGLYLAFRGYN--S-----------------LTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF- 254 (311) Q Consensus 195 si~~t~~dLA~~~a~LAn~G~~--P-----------------~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl- 254 (311) .+.+|..+||.+.+++||+|+- | ...+|+++++++..+..+|...= -+.+|..++--|+ T Consensus 212 ~~~vtplqma~ayaaiaN~G~~~~P~~v~~i~d~~g~~~~~~~~~~~v~~~~~a~~~~~~l~~vv-~~GT~~~a~~~~~~ 290 (390) T 2v2f_F 212 QYGASSEKMAAAYAAFANGGIYHKPMYINKVVFSDGSKKEFSDVGTRAMKETTAYMMTEMMKTVL-AYGTGRGAYLPWLA 290 (390) T ss_dssp TSSCCHHHHHHHHHHHHTTSEECCCBCEEEEEETTSCEEECCCCCEECSCHHHHHHHHHHHHHHH-HTSTTGGGCCTTSC T ss_pred CCCCCHHHHHHHHHHHHCCCEEECCEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCCCCE T ss_conf 40458999999999986498670678877798548860022564434553899999999876460-26763110279970 Q ss_pred -CCCCCCCC--------------------EEEEEECCCCEEEEEC------CCCCCCCCCHHHHHH---HHHHHHHHCCC Q ss_conf -71565221--------------------1033437851799875------320778984899999---99999994865 Q gi|254780186|r 255 -PGKSGVGG--------------------GILAIVPSKASIAVWS------PGLDNSGNSLLGAKA---LELLAIRTGWS 304 (311) Q Consensus 255 -PaKSGVgG--------------------gilavvPg~~gIav~S------P~LD~~GNSv~G~~~---le~ls~~l~l~ 304 (311) -+|+|-.- =.++--| +..++||- ++....|-++++-.+ ++.+.+..... T Consensus 291 vaGKTGTaq~~~~~~~~~~~~~~~~~~d~wfvG~~P-~~~~~VwvG~~~~~~~~~~~G~~~aapi~~~i~~~~~~~~~~~ 369 (390) T 2v2f_F 291 QAGKTGTSNYTDDEIEKHIKNTGYVAPDEMFVGYTR-KYSMAVWTGYSNRLTPIVGDGFLVAAKVYRSMITYLSEGSNPE 369 (390) T ss_dssp CEEEEEECCCCC-----------CCBSEEEEEEECS-SEEEEEEEECSSTTSCBCGGGGGHHHHHHHHHHHHHHTTC-CC T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 789814766777765333455677766469999789-9799999941799888688732799999999999996369977 Q ss_pred CCC Q ss_conf 648 Q gi|254780186|r 305 IFD 307 (311) Q Consensus 305 iF~ 307 (311) =|+ T Consensus 370 ~f~ 372 (390) T 2v2f_F 370 DWN 372 (390) T ss_dssp CCC T ss_pred CCC T ss_conf 799 No 11 >2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A* Probab=95.55 E-value=0.017 Score=35.55 Aligned_cols=109 Identities=20% Similarity=0.091 Sum_probs=68.8 Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHH-----HHHCCCCHHHHHHHH-----HHC----CCCC Q ss_conf 87300007999999999982597077788755189999775544-----541133125667898-----707----8715 Q gi|254780186|r 192 HQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAV-----MLTCGHYDHSGDFAY-----RVG----FPGK 257 (311) Q Consensus 192 ~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~-----M~TcGmYd~SG~fa~-----~VG----lPaK 257 (311) -.|.+..|++|+|+++..+.|+|+ +.|+|+++++.++.+.+- |..-|......++.| ..+ .=+. T Consensus 265 ~~~Gl~~t~rD~ar~g~l~l~~G~--~~g~qil~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Yg~~ww~~~~~~~~~~~ 342 (392) T 2dcf_A 265 ANGGVSCTARDLARVGRMMLDGGV--APGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDGSYTRQWWCTGNERGNVSG 342 (392) T ss_dssp TTTCEEECHHHHHHHHHHHHTTTE--ETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTCEEETTEEECCCTTCCEEE T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC--CCCCEECCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEE T ss_conf 335676778899999999971887--689463599999998567872000245656678999987535625899972899 Q ss_pred CCCCCEEEEEECCC-CEEEEECCCCCCCCCCHH--HHHHHHHHHHHHC Q ss_conf 65221103343785-179987532077898489--9999999999948 Q gi|254780186|r 258 SGVGGGILAIVPSK-ASIAVWSPGLDNSGNSLL--GAKALELLAIRTG 302 (311) Q Consensus 258 SGVgGgilavvPg~-~gIav~SP~LD~~GNSv~--G~~~le~ls~~l~ 302 (311) +|.+|-.+-|.|.. +.|+++|=.-|..+.... -..+++.+.+.+. T Consensus 343 ~G~~GQ~i~vdP~~~lvIv~~S~~~~~~~~~~~~~~~~i~~~i~~al~ 390 (392) T 2dcf_A 343 IGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALD 390 (392) T ss_dssp EETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTS T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 857895899983699899995999999846689999999999999873 No 12 >3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A Probab=95.23 E-value=0.053 Score=32.40 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=111.2 Q ss_pred HCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHCCCCCCCCCHH-HHHHHCCCCCCCCCCHH Q ss_conf 702899808-997887668786401999999999999996112-899999465765677204-44201148984763111 Q gi|254780186|r 37 HFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEIWKRVGREPSGSSFDS-IVQLENENGIPRNPFVN 113 (311) Q Consensus 37 ~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V~~~VG~ePSg~~FNS-i~~Le~~~g~P~NPmiN 113 (311) .+||++.+. +|+++.. +.+.+|++-|++|+++..++|++.. .++-++|-..+......+ +..+ ..|. . +. T Consensus 16 ~~~v~~~D~~tG~~~~~-n~d~~~~~AS~~Kl~~a~~~l~~~~~g~ld~~v~~~~~~~~~~~~~~~~--~~g~---~-~t 88 (265) T 3m6b_A 16 RLGVYVPATGTTAAIEY-RADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQ--HVQT---G-MT 88 (265) T ss_dssp EEEEEECCCSSCCCEEE-STTSCEECGGGGHHHHHHHHHHHSCGGGGGCEECCCGGGCCSCCTTGGG--CTTT---C-EE T ss_pred EEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCC--CCCC---C-EE T ss_conf 69999999999988998-9997388389999999999998577678884278549995068985202--5888---5-14 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC----CCHHHHHHH Q ss_conf 3799999864488888999999999999872899862478999985112412799999998278888----998999999 Q gi|254780186|r 114 AGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR----YKIEDVLKF 189 (311) Q Consensus 114 AGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~----~dv~~~Ld~ 189 (311) ...+...-++.+ + ....+.+.+ .+ |+.. .+.+. +..++++.|.-. +.....-.. T Consensus 89 v~~ll~~mi~~S--d-N~Aa~~L~~---~~-Gg~~-~~~~~--------------~n~~~~~lG~~~t~~~~~~~~~~~~ 146 (265) T 3m6b_A 89 IGQLCDAAIRYS--D-GTAANLLLA---DL-GGPG-GGTAA--------------FTGYLRSLGDTVSRLDAEEPELNRD 146 (265) T ss_dssp HHHHHHHHHHSC--C-HHHHHHHHH---HH-CSTG-GGHHH--------------HHHHHHHTTCCSCCCCCCTTGGGCC T ss_pred HHHHHHHHHHHC--C-HHHHHHHHH---HH-CCHH-HHHHH--------------HHHHHHHCCCCCEECCCCCCCCCCC T ss_conf 999999999843--3-899999999---96-8968-89999--------------9999997598643613677665544 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHC--CCCCCCCC--CE-- Q ss_conf 9987300007999999999982597077788755189999775544541133125667898707--87156522--11-- Q gi|254780186|r 190 YFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVG--FPGKSGVG--GG-- 263 (311) Q Consensus 190 Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VG--lPaKSGVg--Gg-- 263 (311) ......-..+.++++++-.-+.+ ...+++........+|..+.....-..+...-| +..|+|-+ |+ T Consensus 147 ~~~~~~~~~t~~~~a~~l~~l~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~KtG~~~~~~~~ 218 (265) T 3m6b_A 147 PPGDERDTTTPHAIALVLQQLVL--------GNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRAN 218 (265) T ss_dssp CTTCCTTEECHHHHHHHHHHHHT--------SSSSCHHHHHHHHHHHHTCSSCTTTHHHHSCTTSEEEEEEEEETTTEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEE T ss_conf 56764102259999999999973--------7656888999999997458877776445678885688876367877479 Q ss_pred EEEEE--CC--CCEEEEEC--CCCCCCCCCHHHHHHHHHHHHH Q ss_conf 03343--78--51799875--3207789848999999999999 Q gi|254780186|r 264 ILAIV--PS--KASIAVWS--PGLDNSGNSLLGAKALELLAIR 300 (311) Q Consensus 264 ilavv--Pg--~~gIav~S--P~LD~~GNSv~G~~~le~ls~~ 300 (311) .++++ |+ .+-|+|+. |.-+...-.- -.++..+++. T Consensus 219 dvgiv~~~~g~~~iiaV~~~~~~~~~~~~~~--~~~ia~~ar~ 259 (265) T 3m6b_A 219 DIAVVWSPTGVPYVVAVMSDRAGGGYDAEPR--EALLAEAATC 259 (265) T ss_dssp EEEEEECTTSCEEEEEEEEECGGGCTTCCCC--HHHHHHHHHH T ss_pred EEEEEECCCCCEEEEEEEECCCCCCCCHHHH--HHHHHHHHHH T ss_conf 9999995999989999995799888588999--9999999999 No 13 >3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Probab=95.23 E-value=0.069 Score=31.65 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=69.8 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCC--C-------------------CCCCEECCHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 98730000799999999998259707--7-------------------78875518999977554454113312566789 Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYN--S-------------------LTNQSVISPLQSRCVNAVMLTCGHYDHSGDFA 249 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~--P-------------------~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa 249 (311) +-|=.+.+|.-+||.+.+++||+|+- | ...+|+++++++..+..+|... -...+..+ T Consensus 329 iGqg~~~vTPlqma~a~aaiANgG~~~~P~lV~~i~~~dg~~i~~~~~~~~~~~is~~~a~~l~~~m~~v--~~~~~~~~ 406 (483) T 3lo7_A 329 IGQKDVALTPLANAEIAATIANGGITMRPYLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGA--EKVAQQKG 406 (483) T ss_dssp TTCTTCBBCHHHHHHHHHHHHTTTEEECCBSEEEEECTTCCEEEECCCCEEEECSCHHHHHHHHHHHHHH--HHHSCCTT T ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHH--HHHCEECC T ss_conf 1045544677887776665425983326601456766987532013564332137999999999999754--22200223 Q ss_pred HHHCC--CCCCCCC-----C-------EEEEEECC---CCEEEEEC----CCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 87078--7156522-----1-------10334378---51799875----32077898489999999999994 Q gi|254780186|r 250 YRVGF--PGKSGVG-----G-------GILAIVPS---KASIAVWS----PGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 250 ~~VGl--PaKSGVg-----G-------gilavvPg---~~gIav~S----P~LD~~GNSv~G~~~le~ls~~l 301 (311) .--|. -+|.|-. | =.++-.|- +..++||= +.....|.++++-.+-+.+...| T Consensus 407 ~~~g~~vAGKTGTaq~~~d~~~~~~~aWFvGfaP~~~P~~avaV~ve~g~~~~~~~G~~~AaPI~~~im~~~L 479 (483) T 3lo7_A 407 AIPGVQIASKTGTAEHGTDPRHTPPHAWYIAFAPAQAPKVAVAVLVENGADRLSATGGALAAPIGRAVIEAAL 479 (483) T ss_dssp CCTTCCCEEEEEEECCSSCTTTSCCEEEEEEEESTTSCCEEEEEEETTCCCSSSSSSCTTHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 4489779999853225768777787289999977799939999999779978887516999999999999997 No 14 >3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A* Probab=94.87 E-value=0.083 Score=31.14 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=111.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHH----HHHHCCCCCCCCCCHHHHHHHHHHH-----HCCCC Q ss_conf 64019999999999999961128999994657656772044----4201148984763111379999986-----44888 Q gi|254780186|r 57 FLFSIQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSI----VQLENENGIPRNPFVNAGAIVVSDA-----VLGSS 127 (311) Q Consensus 57 ~~FsiqSisK~f~l~~al~~~G~~V~~~VG~ePSg~~FNSi----~~Le~~~g~P~NPmiNAGAI~~~sl-----i~~~~ 127 (311) -.|..-|+-|||+++.||+...- +....|+.- ..-.....+.+.++-=..||..++= +..+. T Consensus 265 ~~y~PGStfK~~t~~aal~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~al~~S~N~~~~~l~~~~ 335 (542) T 3equ_A 265 DMIEPGSAIKPFVIAKALDAGKT---------DLNERLNTQPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARF 335 (542) T ss_dssp CCBCCGGGGHHHHHHHHHHHTSS---------CTTCEEECCCEEETTEEECCSSCCSEEEHHHHHHHTCHHHHHHHHTTS T ss_pred CCCCCCHHHHHHHHHHHHHCCCE---------ECCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHHC T ss_conf 76778426668999999856963---------033011457753443211233677842489985417451545788872 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 88999999999999872899862478999985112412799999998278888998999999998730000799999999 Q gi|254780186|r 128 SADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSG 207 (311) Q Consensus 128 ~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~ 207 (311) . .+++.++++++--+.+..+|- -.|......+. . ....-+....-+-|- +.+|.-+||.+. T Consensus 336 g----~~~~~~~~~~fG~g~~t~idl---p~e~~~~~~~~---------~--~~~~~~~~~~~~Gqg-~~~Tplq~a~~~ 396 (542) T 3equ_A 336 G----AEEMYDFYHELGIGVRMHSGF---PGETAGLLRNW---------R--RWRPIEQATMSFGYG-LQLSLLQLARAY 396 (542) T ss_dssp C----HHHHHHHHHHTTTTSCCCCSC---TTCCCCBCCCG---------G--GCCHHHHHHHHTTCS-CBBCHHHHHHHH T ss_pred C----HHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCC---------C--CCCCHHHHHHCCCCC-CCCCHHHHHHHH T ss_conf 9----588999999749986568998---75434543443---------3--467311223204776-568889985552 Q ss_pred HHHHCCCC----------CCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCCC-----C-------- Q ss_conf 99825970----------7778875518999977554454113312566789870787--156522-----1-------- Q gi|254780186|r 208 LYLAFRGY----------NSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP--GKSGVG-----G-------- 262 (311) Q Consensus 208 a~LAn~G~----------~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP--aKSGVg-----G-------- 262 (311) +++||+|+ ....+++++++++++.++.+|...=....+|..+.--|.+ +|+|-+ | T Consensus 397 a~iaN~G~~~~p~~v~~i~~~~~~~~~~~~~a~~i~~~l~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~~~~g~~~~~~~~ 476 (542) T 3equ_A 397 TALTHDGVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGRYADNKHV 476 (542) T ss_dssp HHHHTTTEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC-----------CCE T ss_pred HEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE T ss_conf 32520878998765442027877532447789999989986372798187205799548999200015678855789846 Q ss_pred -EEEEEEC---CCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHH Q ss_conf -1033437---851799875320---77898489999999999994 Q gi|254780186|r 263 -GILAIVP---SKASIAVWSPGL---DNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 263 -gilavvP---g~~gIav~SP~L---D~~GNSv~G~~~le~ls~~l 301 (311) =.++-.| .+..++||=..- ...|.++++-.+-+.+...+ T Consensus 477 awFvGy~P~~~p~~av~V~v~~~~~~g~~G~~~AaPi~~~i~~~~l 522 (542) T 3equ_A 477 ATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSL 522 (542) T ss_dssp EEEEEEESSSSCCEEEEEEEESCCSSCCCHHHHTHHHHHHHHHHHH T ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999998879985999999942898987567899999999999999 No 15 >1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ... Probab=94.78 E-value=0.24 Score=28.10 Aligned_cols=229 Identities=15% Similarity=0.151 Sum_probs=112.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-H Q ss_conf 99999999997760799999828332059824702899808-997887668786401999999999999996112--8-9 Q gi|254780186|r 5 KIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-E 80 (311) Q Consensus 5 ~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~ 80 (311) +.|+++-+..+.. + |+ .|+.+.+. .|+++-.-+.+.+|+..|+.|+++...+|++.- . . T Consensus 3 ~~~~~i~~~~~~~-~-~~---------------~~~~v~D~~tg~~l~~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~l~ 65 (263) T 1m40_A 3 ETLVKVKDAEDQL-G-AR---------------VGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQ 65 (263) T ss_dssp HHHHHHHHHHHHH-T-SE---------------EEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCC T ss_pred HHHHHHHHHHHHC-C-CE---------------EEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 0899999999844-9-85---------------99999999999787778899854457899999999999986527778 Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH----------HHHHHHHHCCCCCC Q ss_conf 99994657656772044420114898476311137999998644888889999999----------99999872899862 Q gi|254780186|r 81 IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENF----------LNFMRGIAGDASIH 150 (311) Q Consensus 81 V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i----------~~~~~~lag~~~i~ 150 (311) .-++|-..+......+-. +... | ++-+.-..+...-++.+. ....+.+ .++++++ |-.... T Consensus 66 ~~~~i~~~~~~~~~~~~~-~~~~---~-g~~~t~~~ll~~mi~~Sd---N~Aa~~L~~~~gg~~~~~~~~~~~-g~~~~~ 136 (263) T 1m40_A 66 LGRRIHYSQNDLVEYSPV-TEKH---L-TDGMTVRELCSAAITMSD---NTAANLLLTTIGGPKELTAFLHNM-GDHVTR 136 (263) T ss_dssp TTCEECCCGGGCCSCCTT-GGGC---T-TTCEEHHHHHHHHHHSCC---HHHHHHHHHHHTSHHHHHHHHHHT-TCSSCC T ss_pred CCCEEEEEHHHCCCCCCC-EECC---C-CCCEEHHHHHHHHHHCCC---HHHHHHHHHHHCCCHHHHHHHHHH-CCHHHH T ss_conf 774799842002379973-0126---8-981649999999886286---799999999846934899999983-546665 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHH Q ss_conf 47899998511241279999999827888899899999999873000079999999999825970777887551899997 Q gi|254780186|r 151 IDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSR 230 (311) Q Consensus 151 ~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~ 230 (311) ++...... ....+.. =.-..|.+|++++..-|.++ +.+++.... T Consensus 137 ~~~~~~~~-----------------~~~~~~~-----------~~~~~Ta~d~a~ll~~l~~~--------~~~~~~~~~ 180 (263) T 1m40_A 137 LDRWEPEL-----------------NEAIPND-----------ERDTTTPAAMATTLRKLLTG--------ELLTLASRQ 180 (263) T ss_dssp CCCCTTGG-----------------GCCCTTC-----------CTTEECHHHHHHHHHHHHHS--------TTSCHHHHH T ss_pred CCCCCCCC-----------------CCCCCCC-----------CCCCCCHHHHHHHHHHHHHC--------CCCCHHHHH T ss_conf 16887766-----------------6899998-----------76740899999999999838--------846888899 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCC------CCCCCCC----EEEEEE--CC--CCEEEEECCCCCCCCCCHHHHHHHHH Q ss_conf 7554454113312566789870787------1565221----103343--78--51799875320778984899999999 Q gi|254780186|r 231 CVNAVMLTCGHYDHSGDFAYRVGFP------GKSGVGG----GILAIV--PS--KASIAVWSPGLDNSGNSLLGAKALEL 296 (311) Q Consensus 231 ~v~s~M~TcGmYd~SG~fa~~VGlP------aKSGVgG----gilavv--Pg--~~gIav~SP~LD~~GNSv~G~~~le~ 296 (311) ....+|...--. .-..+-++| .|+|-++ .+.+++ +| ...++++... ...+.-...+++.. T Consensus 181 ~~~~~~~~~~~~----~~~~~~~~p~~~~v~~KTG~~~~~~~~~~~iv~~~g~~~~ivvv~~~~--~~~~~~~~~~~i~~ 254 (263) T 1m40_A 181 QLIDWMEADKVA----GPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTG--SQATMDERNRQIAE 254 (263) T ss_dssp HHHHHHHCCSSC----TTTGGGGCCTTCEEEEEEEECSTTCEEEEEEEESTTCCCEEEEEEEES--CCCCHHHHHHHHHH T ss_pred HHHHHHHCCEEC----CHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEECCC--CCCCHHHHHHHHHH T ss_conf 999887448136----000012389996488831657788714999999199759999998179--98898999999999 Q ss_pred HHHHH Q ss_conf 99994 Q gi|254780186|r 297 LAIRT 301 (311) Q Consensus 297 ls~~l 301 (311) +++.+ T Consensus 255 i~~~l 259 (263) T 1m40_A 255 IGASL 259 (263) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 16 >1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Probab=94.71 E-value=0.11 Score=30.33 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=73.7 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--C---------CCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 8999999998730000799999999998259707--7---------7887551899997755445411331256678987 Q gi|254780186|r 183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYN--S---------LTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR 251 (311) Q Consensus 183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~--P---------~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~ 251 (311) .....+.=|=|..+.+|.-+||.+.+++||+|+- | ..+++++++++++.+...|...=- +.+|.-++. T Consensus 489 ~~~la~~s~GQG~v~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~~~~~~~vis~~~a~~l~~~m~~VV~-~Gt~~~~~~ 567 (646) T 1vqq_A 489 EILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQVVN-KTHKEDIYR 567 (646) T ss_dssp HHHHHHHHTTCSSCBBCHHHHHHHHHGGGTTTCEECCBCBTTSCCCEEECCCSCHHHHHHHHHHHHHHHH-TTTTTTTCC T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCEECCC T ss_conf 5224220467775123799999999999749818611899557887677778999999999999999975-434022115 Q ss_pred HCC--CCCCCCC---------C---EEEEEECC---CCEEEEECCCCCCCCCCH-HHHHHHHHHHH Q ss_conf 078--7156522---------1---10334378---517998753207789848-99999999999 Q gi|254780186|r 252 VGF--PGKSGVG---------G---GILAIVPS---KASIAVWSPGLDNSGNSL-LGAKALELLAI 299 (311) Q Consensus 252 VGl--PaKSGVg---------G---gilavvPg---~~gIav~SP~LD~~GNSv-~G~~~le~ls~ 299 (311) -|. -+|.|-. | +-.+.-|. +..++||=.--...|.|. .|..+-.-+.+ T Consensus 568 ~~~~vaGKTGTAe~~~~~g~~~~~~awFvgf~~d~P~~av~V~ve~~~~~g~~~~g~~vA~pv~~~ 633 (646) T 1vqq_A 568 SYANLIGKSGTAELKMKQGETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDE 633 (646) T ss_dssp TTSCEEEEEEEEECC------CCEEEEEEEEETTSCSCEEEEEEECCTTTTTHHHHHHHHHHHHHH T ss_pred CCCEEEEEEECCEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 898899982657076778998980699999858999699999997278888662328999999999 No 17 >3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Probab=94.05 E-value=0.03 Score=33.99 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=37.2 Q ss_pred HCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 05982470289980899788766878640199999999999999611 Q gi|254780186|r 31 AKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 31 a~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) +.-+-..-+++|...+|.+...||.++.|.|.|+||+|+-.+++... T Consensus 8 ~~~~~p~~~~~v~~~~~~~~~~gd~dt~f~iaS~tK~~ta~~i~~lv 54 (280) T 3i7j_A 8 GGWPVPAAAAAVIGPAGVLATHGDTARVFALASVTKPLVARAAQVAV 54 (280) T ss_dssp GGSSSSCEEEEEEETTEEEEEESCTTSCEECGGGHHHHHHHHHHHHH T ss_pred HCCCCCCCCEEEECCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHH T ss_conf 55999866448983997881138998889876059999999999999 No 18 >3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} Probab=93.39 E-value=0.017 Score=35.70 Aligned_cols=217 Identities=15% Similarity=0.107 Sum_probs=107.2 Q ss_pred HHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHH Q ss_conf 47028998089-978876687864019999999999999961128-9999946576567720444201148984763111 Q gi|254780186|r 36 DHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-EIWKRVGREPSGSSFDSIVQLENENGIPRNPFVN 113 (311) Q Consensus 36 ~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiN 113 (311) -.+||++.+.+ |+++... .+.+|+..|++|++++..+|++.|+ .+.++|-..+.-....|-. .....|. .+.- T Consensus 14 ~~~gv~v~dl~tG~~~~~n-~~~~~~~AS~~Kl~~~~~~l~~~~~~~ld~~~~~~~~~~~~~~~~-~~~~~g~---~~t~ 88 (260) T 3lez_A 14 VRLGVYAIDTGADKEISYR-ENERFAYTSTFKPLAVGAVLQTKSDEELEETITYSEEDLVTYSPI-TEQHVDE---GMTL 88 (260) T ss_dssp CEEEEEEEETTTTEEEEES-TTSEEECGGGGHHHHHHHHHHHCCHHHHHSEECCCGGGCCSSCTT-GGGCTTT---CEEH T ss_pred CEEEEEEEECCCCCEEEEC-CCCEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCC-CCCCCCC---CEEH T ss_conf 8699999989999888888-997073488999999999998566688772699611011479974-0136898---3339 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH----------HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH Q ss_conf 379999986448888899999999----------9999872899862478999985112412799999998278888998 Q gi|254780186|r 114 AGAIVVSDAVLGSSSADDAIENFL----------NFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKI 183 (311) Q Consensus 114 AGAI~~~sli~~~~~~~~~~~~i~----------~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv 183 (311) -.++...++.+. ....+.+. .+++++ |-....++... ....... T Consensus 89 -~dll~~mi~~Sd---N~Aa~~L~~~~g~~~~~~~~~~~~-g~~~~~l~~~~------------------~~~~~~~--- 142 (260) T 3lez_A 89 -VEIADAAIRYSD---NTAGNLLLEAMGGPDELETILRDI-GDETIEMDRYE------------------TELNEAK--- 142 (260) T ss_dssp -HHHHHHHHHHCC---HHHHHHHHHHTTSHHHHHHHHHHT-TCCSCBCCCCT------------------TGGGCCC--- T ss_pred -HHHHHHHHHCCC---HHHHHHHHHHHCCCHHHHHHHHHC-CCHHHCCCCCC------------------CCCCCCC--- T ss_conf -999999886186---799999999847944689999980-51332034576------------------5455667--- Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHC--CCCCCCCC Q ss_conf 9999999987300007999999999982597077788755189999775544541133125667898707--87156522 Q gi|254780186|r 184 EDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVG--FPGKSGVG 261 (311) Q Consensus 184 ~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VG--lPaKSGVg 261 (311) .....-..|+.|++.+..-|..+ +.+++........+|..+.....-.....--| +-.|+|-+ T Consensus 143 -------~~~~~n~tTa~d~a~ll~~l~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~ 207 (260) T 3lez_A 143 -------PGDIRDTSTAKAMATTLQQYVLE--------DVLDADRREVLTNMLINNTTGDALIRAGVPDGWTVGDKTGAG 207 (260) T ss_dssp -------TTCCTTEEEHHHHHHHHHHHHTS--------SSSCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEE T ss_pred -------CCCCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCC T ss_conf -------89843440799999999999847--------878888999999987447125434334478897789610567 Q ss_pred C----EEEEEE--CCC---CEEEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 1----103343--785---17998753207789848999999999999 Q gi|254780186|r 262 G----GILAIV--PSK---ASIAVWSPGLDNSGNSLLGAKALELLAIR 300 (311) Q Consensus 262 G----gilavv--Pg~---~gIav~SP~LD~~GNSv~G~~~le~ls~~ 300 (311) . ..+++| |+. +-++|++-.-+..- ..+..+++.+++. T Consensus 208 ~~~~~~dvgiv~~~~~~~~~iv~V~~~~~~~~~--~~~~~li~~is~~ 253 (260) T 3lez_A 208 GYGTRNDIGIIWPEGDEEPIVIAIMSSRDEEDA--DYDDKLIEKATEI 253 (260) T ss_dssp TTTEEEEEEEEECTTTCCCEEEEEEEECSSTTC--CCCTHHHHHHHHH T ss_pred CCCCEEEEEEEEECCCCEEEEEEEECCCCCCCH--HHHHHHHHHHHHH T ss_conf 878768999999789935999999816898784--8799999999999 No 19 >1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C* Probab=92.28 E-value=0.65 Score=25.35 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=46.6 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCC--CC-------------------CCCEECCHHHHHHHHHHHHHCC------ Q ss_conf 99998730000799999999998259707--77-------------------8875518999977554454113------ Q gi|254780186|r 188 KFYFHQCSLMMNCVQLAKSGLYLAFRGYN--SL-------------------TNQSVISPLQSRCVNAVMLTCG------ 240 (311) Q Consensus 188 d~Yf~~Csi~~t~~dLA~~~a~LAn~G~~--P~-------------------t~~~vi~~~~~~~v~s~M~TcG------ 240 (311) ..-|=| .+.+|.-+||.+.+++||+|+- |. .-++++++++++.+...|..-. T Consensus 399 ~~~~Gq-~~~vTPlqma~ayaaiANgG~~~~P~lV~~I~d~~g~~i~~~~~~~~~~~is~~~a~~~~~~m~~vv~~~~~g 477 (702) T 1qme_A 399 QSSFGQ-GISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYG 477 (702) T ss_dssp HGGGTC-SCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEETTTTEEEECCCCEEECCSCHHHHHHHHHHHHHHHHCTTTC T ss_pred HHHHCC-CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECCCCC T ss_conf 143079-8667999999999999719859610899999869997874048733576689999999999999862224554 Q ss_pred -CCH-HHHHHHHHH-CC--CCCCCCC Q ss_conf -312-566789870-78--7156522 Q gi|254780186|r 241 -HYD-HSGDFAYRV-GF--PGKSGVG 261 (311) Q Consensus 241 -mYd-~SG~fa~~V-Gl--PaKSGVg 261 (311) .|. .+|....++ |. -+|+|-. T Consensus 478 t~~~~gtg~~~a~~~g~~vaGKTGTA 503 (702) T 1qme_A 478 TMYNHSTGKPTVTVPGQNVALKSGTA 503 (702) T ss_dssp TTEETTTTEESSCBTTBCCEEEEEEE T ss_pred EEECCCCCCCCCCCCCCEEEEEEECC T ss_conf 03126777544368997899999503 No 20 >1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1 Probab=92.24 E-value=0.61 Score=25.49 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=40.0 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC Q ss_conf 98730000799999999998259707778875518999977554454113312566789870787156522 Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVG 261 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVg 261 (311) +-+=++.+|..++|.+.++|||+|+ .++++..+.+...|....... ++ +-+|+|-+ T Consensus 149 ~~~g~~~vTPlq~a~~~~~ian~G~-------~~~p~~~~~~~~~~~~~~~~~------~~--vagKTGTa 204 (262) T 1nrf_A 149 WLDGSLQISPLEQVNILKKFYDNEF-------DFKQSNIETVKDSIRLEESNG------RV--LSGKTGTS 204 (262) T ss_dssp TTSSSSCBCHHHHHHHHHHHHHTTT-------CCCHHHHHHHHHHHEEEEETT------EE--EEEEEEEE T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHC------CC--CCCCCCCC T ss_conf 7479755239999999999954688-------778899999987876654412------33--56640254 No 21 >2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A* Probab=91.61 E-value=0.11 Score=30.37 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=55.8 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCC-------------------CCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHC Q ss_conf 730000799999999998259707-------------------7788755189999775544541133125667898707 Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYN-------------------SLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVG 253 (311) Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~-------------------P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VG 253 (311) +=+.++|.-+||.+.+++||+|+- +...+|+++++++..+..+|...=-...++.-+..-| T Consensus 440 ~g~~~vtplqma~ayat~ANgG~~~~P~~I~~I~d~~G~~i~~~~~~~~vis~~~a~~v~~~L~~vv~~~Gt~~~~~~~g 519 (669) T 2olv_A 440 GSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSG 519 (669) T ss_dssp CTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEEECCCCEEECSCHHHHHHHHHHHGGGSSTTSTTTTCCCSS T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCC T ss_conf 76332468899999999862993515679988887999986067765556799999999998541247887723215899 Q ss_pred --CCCCCCCCC-------------------EEEEEECCCCEEEEEC Q ss_conf --871565221-------------------1033437851799875 Q gi|254780186|r 254 --FPGKSGVGG-------------------GILAIVPSKASIAVWS 278 (311) Q Consensus 254 --lPaKSGVgG-------------------gilavvPg~~gIav~S 278 (311) +-+|+|-+- =.++.-|. +.++||- T Consensus 520 ~~vaGKTGTa~~~~~~~~~~~~~tn~~~DaWFvG~tP~-~~~~VWv 564 (669) T 2olv_A 520 VNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQ-YTMSVWM 564 (669) T ss_dssp CCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEECSS-EEEEEEE T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-EEEEEEE T ss_conf 84279801677577676545567888640799996799-6899998 No 22 >2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B Probab=90.95 E-value=0.28 Score=27.75 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=60.4 Q ss_pred HHHCCHHHHHHHHHHHHCCCCC--------------------CCCCCEECCHHHHHHHHHHHHHC---CCC-----HHHH Q ss_conf 0000799999999998259707--------------------77887551899997755445411---331-----2566 Q gi|254780186|r 195 SLMMNCVQLAKSGLYLAFRGYN--------------------SLTNQSVISPLQSRCVNAVMLTC---GHY-----DHSG 246 (311) Q Consensus 195 si~~t~~dLA~~~a~LAn~G~~--------------------P~t~~~vi~~~~~~~v~s~M~Tc---GmY-----d~SG 246 (311) ++++|..+||.+.+++||+|+. ....+|+++++++..+..+|... |.= ..++ T Consensus 262 ~~~vTplqma~ayat~AN~G~~~~P~~i~~i~d~~G~~i~~~~~~~~~v~s~~~a~~~~~~L~~vv~~gt~~~~~~~~~~ 341 (494) T 2bg1_A 262 GIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTS 341 (494) T ss_dssp TCCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTCSSCCHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCEECCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCC T ss_conf 75542068889999997298252545654588899987234578740147888999999999998722433000036544 Q ss_pred HHHHHHCCC--CCCCCCCE-----EEEEECCCCEEEEECCC-----C-CCCCCCHHHH Q ss_conf 789870787--15652211-----03343785179987532-----0-7789848999 Q gi|254780186|r 247 DFAYRVGFP--GKSGVGGG-----ILAIVPSKASIAVWSPG-----L-DNSGNSLLGA 291 (311) Q Consensus 247 ~fa~~VGlP--aKSGVgGg-----ilavvPg~~gIav~SP~-----L-D~~GNSv~G~ 291 (311) ..+.--|.| +|.|-+-+ .++--| .+.++||-=- + ...|.+.++- T Consensus 342 ~~~~~~~~~vAGKTGTt~~~~DaWfvGytp-~~~~~vWvG~d~~~~~~~~~G~~~a~~ 398 (494) T 2bg1_A 342 LNPTLANADWIGKTGTTNQDENMWLMLSTP-RLTLGGWIGHDDNHSLSQQAGYSNNSN 398 (494) T ss_dssp HCHHHHTSCCEEEEECCTTCSEEEEEEECS-SEEEEEEEECTTCCCCCTTTTTTHHHH T ss_pred CCCCCCCCCEEEEECCCCCCCEEEEEEECC-CCEEEEEEECCCCCCCCCCCCCCCHHH T ss_conf 455558986268665899972379997479-936999996899986766647541389 No 23 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Probab=89.69 E-value=0.064 Score=31.87 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=41.4 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHCCCCC Q ss_conf 4702899808-9978876687864019999999999999961128-99999465765 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-EIWKRVGREPS 90 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~V~~~VG~ePS 90 (311) -.+||++.+. +|+++... .+.+|++.|+.|++++..+|++.++ ++-++|-..+. T Consensus 59 ~~~gv~~~D~~tG~~~~~n-~d~~~~~AS~~Kl~~~~~~l~~~~~~~Ld~~v~i~~~ 114 (307) T 1w7f_A 59 AKLGIFALDTGTNRTVTYR-PDERFAFASTIKALTVGVLLQQKSIEDLNQRITYTRD 114 (307) T ss_dssp CEEEEEEEETTTCCEEEES-TTSCEECGGGHHHHHHHHHHHHCCTGGGGCEECCCTT T ss_pred CEEEEEEEECCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHH T ss_conf 8599999989999888888-9984032789999999999986576776751466388 No 24 >2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A Probab=88.39 E-value=0.076 Score=31.38 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=42.2 Q ss_pred HHHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHCCCCCC Q ss_conf 247028998089-978876687864019999999999999961128-999994657656 Q gi|254780186|r 35 IDHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-EIWKRVGREPSG 91 (311) Q Consensus 35 p~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~V~~~VG~ePSg 91 (311) +-.+||++.+.+ |+++.. ..+.+|+.-|++|+++...+|++.++ .+.++|-..+.. T Consensus 16 ~~~~gv~v~D~~tG~~~~~-n~d~~~~~AS~~Kl~~~~~~l~~~~~~~ld~~~~~~~~~ 73 (265) T 2wk0_A 16 DAKLGIFALDTGTNRTVTY-RPDERFAFASTIKALTVGVLLQQKSIEDLNQRITYTRDD 73 (265) T ss_dssp TCEEEEEEEETTTCCEEEE-STTCEEECGGGHHHHHHHHHHHHCCTGGGGCEECCCTTT T ss_pred CCEEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH T ss_conf 9869999998999988898-899647238899999999999966877757469975665 No 25 >2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens} Probab=88.37 E-value=0.58 Score=25.65 Aligned_cols=58 Identities=26% Similarity=0.446 Sum_probs=38.1 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEE--EC----------CCCCCCCHHHHHHHHH Q ss_conf 97999999999997760799999828332059824702899808997887--66----------8786401999999999 Q gi|254780186|r 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYS--VG----------ESEFLFSIQSISKVFL 69 (311) Q Consensus 2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~--~G----------D~~~~FsiqSisK~f~ 69 (311) |+++.+++.+++.... .++ | ..+++|+ .||+++. .| +.++.|.|-|+||+|+ T Consensus 3 ~~~~~vd~~i~~~~~~---~~~----p--------G~~v~v~-~~g~i~~~~~G~~d~~~~~~~~~dt~f~iaSisK~~t 66 (358) T 2qz6_A 3 DIRQVVDSTVEPLMQQ---QDI----A--------GLSVAVI-QNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFT 66 (358) T ss_dssp CHHHHHHHHHHHHHHH---TTC----S--------EEEEEEE-ETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHH T ss_pred HHHHHHHHHHHHHHHH---CCC----C--------EEEEEEE-ECCEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHH T ss_conf 6999999999999984---799----8--------6999999-9999999858760066698999999796154789999 Q ss_pred HHHHHH Q ss_conf 999996 Q gi|254780186|r 70 LTIALR 75 (311) Q Consensus 70 l~~al~ 75 (311) -++++. T Consensus 67 a~~i~~ 72 (358) T 2qz6_A 67 ATLAGY 72 (358) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 26 >2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A* Probab=88.01 E-value=0.61 Score=25.52 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=59.8 Q ss_pred HHHCCHHHHHHHHHHHHCCCCC--C------------------CCCCEECCHHHHHHHHHHHHH---CCCCH--H---HH Q ss_conf 0000799999999998259707--7------------------788755189999775544541---13312--5---66 Q gi|254780186|r 195 SLMMNCVQLAKSGLYLAFRGYN--S------------------LTNQSVISPLQSRCVNAVMLT---CGHYD--H---SG 246 (311) Q Consensus 195 si~~t~~dLA~~~a~LAn~G~~--P------------------~t~~~vi~~~~~~~v~s~M~T---cGmYd--~---SG 246 (311) ++++|..+||.+.++|||+|+. | ...+|+++++++..+..+|.. -|.-. . ++ T Consensus 488 ~~~vTplqma~aYat~ANgG~~~~P~~I~~I~d~~G~vi~~~~~~~~~vis~~~A~~~~~~L~~vv~~gt~~~~~~~~~~ 567 (720) T 2jch_A 488 GIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTS 567 (720) T ss_dssp TCCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCCCCEESSCHHHHHHHHHHHHHHHHHCSSCCHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC T ss_conf 23420034221300311498781568999898799978602688755666989999999999999871654110146665 Q ss_pred HHHHHHCCC--CCCCCCCE-----EEEEECCCCEEEEECC-----CC-CCCCCCHHHHHH Q ss_conf 789870787--15652211-----0334378517998753-----20-778984899999 Q gi|254780186|r 247 DFAYRVGFP--GKSGVGGG-----ILAIVPSKASIAVWSP-----GL-DNSGNSLLGAKA 293 (311) Q Consensus 247 ~fa~~VGlP--aKSGVgGg-----ilavvPg~~gIav~SP-----~L-D~~GNSv~G~~~ 293 (311) .-+.--|.| +|+|-+-. .++--| ++.++||-= ++ ...|-+.++-.. T Consensus 568 ~~~~~~~~~vAGKTGTt~~~~DaWFvGytp-~~~~~VWvG~d~~~~~~~~~G~~~a~~~~ 626 (720) T 2jch_A 568 LNPTLANADWIGKTGTTNQDENMWLMLSTP-RLTLGGWIGHDDNHSLSQQAGYSNNSNYM 626 (720) T ss_dssp HCHHHHTSCCEEEEEECTTSCEEEEEEECS-SEEEEEEEECTTCCCCCTTTTTTHHHHHH T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 465557986257704789853489999729-90799999889998576764754259999 No 27 >2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi} Probab=87.85 E-value=0.44 Score=26.41 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=45.0 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCC--CH---HHHHHHHH---HC--CCCCCCCCC Q ss_conf 7300007999999999982597077788755189999775544541133--12---56678987---07--871565221 Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGH--YD---HSGDFAYR---VG--FPGKSGVGG 262 (311) Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGm--Yd---~SG~fa~~---VG--lPaKSGVgG 262 (311) ...+-.|++||++.+..+.|+ ++++++++..+...+-.....- ++ +.=-|... -| +-.++|-.| T Consensus 234 aggl~st~~Dla~~~~~~l~~------~~~lls~~~~~~m~~~~~~~~~~~~~~~~yG~G~~~~~~~~g~~~~~H~G~~~ 307 (447) T 2qmi_A 234 DGGLLSSVLDLAKYLKMYIER------DESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVG 307 (447) T ss_dssp TTCCEECHHHHHHHHHHHHTT------CCSSSCHHHHHHHTSCCEECSCCSSSCCEECSSSEEEEEETTEEEEEEEEECS T ss_pred CCCCCCCHHHHHHHHHHHHHC------CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCC T ss_conf 542007899999999999748------99758999999985204578855577665110158523789970798788765 Q ss_pred ---EEEEEECC-CCEEEEECCC Q ss_conf ---10334378-5179987532 Q gi|254780186|r 263 ---GILAIVPS-KASIAVWSPG 280 (311) Q Consensus 263 ---gilavvPg-~~gIav~SP~ 280 (311) ..+.+.|. ..+|.+.+=. T Consensus 308 g~~s~~~~~Pe~~~~ivvl~N~ 329 (447) T 2qmi_A 308 MYTGYIGYIPEKKIGVAVLENS 329 (447) T ss_dssp SCEEEEEEETTTTEEEEEEESS T ss_pred CCCEEEEEEECCCEEEEEEECC T ss_conf 3747999995599899999858 No 28 >3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* Probab=87.63 E-value=0.61 Score=25.50 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=64.8 Q ss_pred HHHHCCHHHHHHHHHHHHCCCCCC--------------------CCCCEECCHHHHHHHHHHHHHCCCCHHHHHH-HHHH Q ss_conf 300007999999999982597077--------------------7887551899997755445411331256678-9870 Q gi|254780186|r 194 CSLMMNCVQLAKSGLYLAFRGYNS--------------------LTNQSVISPLQSRCVNAVMLTCGHYDHSGDF-AYRV 252 (311) Q Consensus 194 Csi~~t~~dLA~~~a~LAn~G~~P--------------------~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~f-a~~V 252 (311) =++++|.-+||.+.+++||+|+.. ...+|+++++++..+..+|...=- +..|.- ..++ T Consensus 559 G~~~vTPlqmA~aYatiANgG~~~~P~~I~~I~d~dG~vi~~~~~~~~~vis~~tA~~v~~~M~~VV~-~GTg~~~~~~~ 637 (751) T 3fwm_A 559 GALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQ-RGTGRQLGAKY 637 (751) T ss_dssp TCCEECHHHHHHHHHHHHTTSEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHH-TSTTHHHHHHS T ss_pred CCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCHHCCC T ss_conf 88625788988899999749858356899999989998870368977636899999999999998755-56730011238 Q ss_pred -C--CCCCCCCCCE-----EEEEECCCCEEEEEC-----CCCCCCCCCHHHHHHHHHHH Q ss_conf -7--8715652211-----033437851799875-----32077898489999999999 Q gi|254780186|r 253 -G--FPGKSGVGGG-----ILAIVPSKASIAVWS-----PGLDNSGNSLLGAKALELLA 298 (311) Q Consensus 253 -G--lPaKSGVgGg-----ilavvPg~~gIav~S-----P~LD~~GNSv~G~~~le~ls 298 (311) | +-+|.|-+=. .++.-| +..++||- =+....|-+.++-.+-+.+. T Consensus 638 ~~~~vAGKTGTT~~~rDaWFvG~tp-~~~~~VWvG~Ddn~~~~~tG~~~Aapiw~~~m~ 695 (751) T 3fwm_A 638 PNLHLAGKTGTTNNNVDTWFAGIDG-STVTITWVGRDNNQPTKLYGASGAMSIYQRYLA 695 (751) T ss_dssp GGGCCEEEEEECGGGSEEEEEEECS-SEEEEEEEECTTCCCCCCCTTHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCEEEEEECCC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9975999886379970599998589-969999997789997878445999999999996 No 29 >3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae} Probab=87.33 E-value=1.2 Score=23.60 Aligned_cols=203 Identities=17% Similarity=0.108 Sum_probs=101.3 Q ss_pred EEEEEECCCCEEEECC---CCCCCCHHHHHHHHHHHHHHHHCC---HH-HHHHHCCCCCCCCCHHHHHHHCCCCCCCC-C Q ss_conf 2899808997887668---786401999999999999996112---89-99994657656772044420114898476-3 Q gi|254780186|r 39 GMSLALEDGTVYSVGE---SEFLFSIQSISKVFLLTIALRKFD---EE-IWKRVGREPSGSSFDSIVQLENENGIPRN-P 110 (311) Q Consensus 39 giai~t~dG~~~~~GD---~~~~FsiqSisK~f~l~~al~~~G---~~-V~~~VG~ePSg~~FNSi~~Le~~~g~P~N-P 110 (311) .+-+.+.+...+..-+ +..+|+=-|+-|||+++.|||..- ++ +..+=|.. ..| +.+| + T Consensus 43 ~~vi~d~~~~~~~~~~~nRA~~~~~PgSTFKi~~a~aaLe~G~i~~~~~~~~~~g~~---~~~-----------~~~~~~ 108 (265) T 3hbr_A 43 VVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQT---RDI-----------ATWNRD 108 (265) T ss_dssp EEEEEETTTTEEEESCHHHHTCEECCGGGGHHHHHHHHHHTTSSCCTTCCBCCCSCC---CSS-----------GGGSSC T ss_pred EEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCC---CCC-----------CCCCCC T ss_conf 899998899957750665652788997338999999999869859977044189956---558-----------875899 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 11137999998644888889999999999998728998624789999851124127999999982788889989999999 Q gi|254780186|r 111 FVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFY 190 (311) Q Consensus 111 miNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Y 190 (311) +.=..||..++- --|..+. +++ |- -.+..+++.+|.=..|+...++.| T Consensus 109 ~tl~~Al~~S~N--------~~f~~l~---~~i-G~--------------------~~~~~~~~~~G~G~~~~~~~~~~~ 156 (265) T 3hbr_A 109 HNLITAMKYSVV--------PVYQEFA---RQI-GE--------------------ARMSKMLHAFDYGNEDISGNVDSF 156 (265) T ss_dssp BCHHHHHHTTCH--------HHHHHHH---HHH-CH--------------------HHHHHHHHHHTCTTCCC-CCTTTH T ss_pred CCHHHHHHHCCH--------HHHHHHH---HHH-CC--------------------HHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 899999997080--------9999997---772-93--------------------778999998699998889886644 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC-------CE Q ss_conf 98730000799999999998259707778875518999977554454113312566789870787156522-------11 Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVG-------GG 263 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVg-------Gg 263 (311) .-+-++.+|..++|.+.+.+||+|. .++++..+.++..|.... .+.| -+=+|+|.+ |= T Consensus 157 w~~g~l~iTPlq~a~~~~~ian~~~-------~~s~~~~~~v~~~m~~~~----~~g~----~vaGKTGTa~~~~~~~~W 221 (265) T 3hbr_A 157 WLDGGIRISATEQISFLRKLYHNKL-------HVSERSQRIVKQAMLTEA----NGDY----IIRAKTGYSTRIEPKIGW 221 (265) T ss_dssp HHHSSCCEEHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEEEE----CSSC----EEEEEEEEECSSSSCEEE T ss_pred CCCCCEEECHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHHH----CCCE----EEEEECCCCCCCCCCCEE T ss_conf 0379700108999999999983996-------888899999999988633----1580----578510355468998689 Q ss_pred EEEEECCCC---EEEEECCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 033437851---7998753207789848999999999999486 Q gi|254780186|r 264 ILAIVPSKA---SIAVWSPGLDNSGNSLLGAKALELLAIRTGW 303 (311) Q Consensus 264 ilavvPg~~---gIav~SP~LD~~GNSv~G~~~le~ls~~l~l 303 (311) .++-+|-.- -+++.-..-+..|.++|. .+.+.+-+++++ T Consensus 222 fvG~~~~~~~~~~~av~i~~~~~~~~~~a~-~i~~~il~~~~i 263 (265) T 3hbr_A 222 WVGWVELDDNVWFFAMNMDMPTSDGLGLRQ-AITKEVLKQEKI 263 (265) T ss_dssp EEEEEECSSCEEEEEEEEECSSGGGTTHHH-HHHHHHHHHTTS T ss_pred EEEEEECCCCEEEEEEEEECCCCCCHHHHH-HHHHHHHHHCCC T ss_conf 999998799869999997569988759999-999999998599 No 30 >3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A* Probab=86.99 E-value=0.18 Score=28.94 Aligned_cols=49 Identities=22% Similarity=0.157 Sum_probs=38.4 Q ss_pred HHHCCCHHHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 320598247028998089-97887668786401999999999999996112 Q gi|254780186|r 29 ELAKVRIDHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 29 ~La~vdp~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) +|++.-+-.+||++.+.+ |+++.. +.+.+|+.-|++|++++..++++.. T Consensus 10 ~l~~~~~g~vgv~v~Dl~tG~~~~~-n~d~~~~~AS~~Kl~~a~~~l~~~~ 59 (264) T 3c5a_A 10 KLEQDFGGSIGVYAMDTGSGATVSY-RAEERFPLCSSFKGFLAAAVLARSQ 59 (264) T ss_dssp HHHHHHTSEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHHHH T ss_pred HHHHHCCCEEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHHH T ss_conf 9998739879999998999988898-8997584288999999999998515 No 31 >1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A Probab=86.25 E-value=0.2 Score=28.64 Aligned_cols=225 Identities=14% Similarity=0.113 Sum_probs=110.6 Q ss_pred CHHHHCCCHHHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CH-HHHHHHCCCCCCCCCHHHHHHHC Q ss_conf 8332059824702899808-99788766878640199999999999999611--28-99999465765677204442011 Q gi|254780186|r 27 IPELAKVRIDHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKF--DE-EIWKRVGREPSGSSFDSIVQLEN 102 (311) Q Consensus 27 IP~La~vdp~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~--G~-~V~~~VG~ePSg~~FNSi~~Le~ 102 (311) +.+|++.-+-.+||++.+. +|+++... .+.+|+..|++|++++..+|++. |+ ...++|-..+....-.+-. +.. T Consensus 20 l~~l~~~~~g~~gv~~~D~~tg~~~~~n-~d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~~~~~~~-~~~ 97 (276) T 1o7e_A 20 FAALEKACAGRLGVTLLDTASGRRIGHR-QDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPV-TRR 97 (276) T ss_dssp HHHHHHHHTSEEEEEEEETTTCCEEEES-TTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGCCSSCTT-GGG T ss_pred HHHHHHHCCCEEEEEEEECCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCC-CCC T ss_conf 9999986398699999989999887777-99752434999999999999988648967563311047560368974-213 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 489847631113799999864488888999-------9999999998728998624789999851124127999999982 Q gi|254780186|r 103 ENGIPRNPFVNAGAIVVSDAVLGSSSADDA-------IENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRS 175 (311) Q Consensus 103 ~~g~P~NPmiNAGAI~~~sli~~~~~~~~~-------~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~ 175 (311) ..|.. +----++...++.+..++.+. .+.+-.+++++- .....++... ... T Consensus 98 ~~g~~----~t~~~ll~~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~-~~~~~~~~~~----~~~------------- 155 (276) T 1o7e_A 98 HAGKD----MTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASG-DTVSRSDRLE----PEL------------- 155 (276) T ss_dssp GTTEE----EEHHHHHHHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHT-CSSCCCCCCT----TGG------------- T ss_pred CCCCC----EEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCCCCCC----CCC------------- T ss_conf 68883----1099999999985648999999999559168999999826-4011234544----423------------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC Q ss_conf 78888998999999998730000799999999998259707778875518999977554454113312566789870787 Q gi|254780186|r 176 YGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP 255 (311) Q Consensus 176 ~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP 255 (311) ....+. ...-..|.+|++++..-|.++ .+++++.....+.+|..+--+..- .+-++| T Consensus 156 ~~~~~~-----------~~~~~tt~~~~a~ll~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p 212 (276) T 1o7e_A 156 NSFAKG-----------DPRDTTTPAAMAATLQRVVLG--------EVLQPASRQQLADWLIDNETGDAC----LRAGLG 212 (276) T ss_dssp GCCBTT-----------BCTTEECHHHHHHHHHHHHTS--------SSSCHHHHHHHHHHHHTCSSCTTT----HHHHSC T ss_pred CCCCCC-----------CCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCC----CCCCCC T ss_conf 478899-----------977848499999999999838--------867878999999998568326542----224578 Q ss_pred ------CCCCCC--C--EEEEEE---CC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf ------156522--1--103343---78--517998753207789848999999999999 Q gi|254780186|r 256 ------GKSGVG--G--GILAIV---PS--KASIAVWSPGLDNSGNSLLGAKALELLAIR 300 (311) Q Consensus 256 ------aKSGVg--G--gilavv---Pg--~~gIav~SP~LD~~GNSv~G~~~le~ls~~ 300 (311) -|.|-+ | ..+++| |+ .+-|+||.-. ...+.-....++..+++- T Consensus 213 ~~~~v~~KtG~~~~~~~~d~giv~~~~~g~~~iiaV~~~~--~~~~~~~~~~~ia~i~r~ 270 (276) T 1o7e_A 213 KRWRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQA--GAISYEQRASVLAQVGRI 270 (276) T ss_dssp TTEEEEEEEEECSSSEEEEEEEEEETTSSCCEEEEEEEEC--TTSCHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECC--CCCCHHHHHHHHHHHHHH T ss_conf 7765767614257786356999996589967999999479--999989999999999999 No 32 >3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583} Probab=85.89 E-value=0.42 Score=26.57 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=36.0 Q ss_pred HHHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 247028998089-97887668786401999999999999996112 Q gi|254780186|r 35 IDHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 35 p~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) |..+||++.+.+ |+++.. +.+.+|+..|+.|++++..++++.. T Consensus 49 ~g~~~v~~~dl~tg~~~~~-n~~~~~~~AS~~Kl~~~~~~l~~v~ 92 (282) T 3cjm_A 49 EGTVGISYLDLETGEQRSV-NGQHEFYTASTIKVPLTMLVADTVA 92 (282) T ss_dssp SSEEEEEEEETTTCCEEEE-STTCCEECGGGGHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCCEEEE-CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9849999998999988888-8998422188899999999999997 No 33 >1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A Probab=85.51 E-value=0.7 Score=25.10 Aligned_cols=223 Identities=15% Similarity=0.087 Sum_probs=101.2 Q ss_pred HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHH Q ss_conf 7028998089-978876687864019999999999999961128-99999465765677204442011489847631113 Q gi|254780186|r 37 HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-EIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNA 114 (311) Q Consensus 37 ~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNA 114 (311) .+||.+.+.+ |+++.. +.+.+|+.-|++|+++++.+++...+ ++-+++-..+......|-.. .. +|... +.- T Consensus 14 ~~gv~~~d~~tG~~~~~-n~d~~~~~AS~~Kl~~~~~~l~~~~~g~L~~~~~~~~~~~~~~~~~~-~~---~~~~~-~~~ 87 (258) T 1ghp_A 14 HIGVYALDTKSGKEVKF-NSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPIL-EK---YVGKD-ITL 87 (258) T ss_dssp EEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHHSCGGGGGCEEEECGGGCCSSCTTG-GG---GTTEE-EEH T ss_pred EEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCE-EE---CCCCC-EEH T ss_conf 69999998999988998-89971846899999999999997456899843897466522799742-32---48982-209 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH---HHHHH-HH Q ss_conf 799999864488888999999999999872899862478999985112412799999998278888998---99999-99 Q gi|254780186|r 115 GAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKI---EDVLK-FY 190 (311) Q Consensus 115 GAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv---~~~Ld-~Y 190 (311) -...-..++.+ + ......+.+.+ |. ..+...+++..+.-...+ +.... .. T Consensus 88 ~~ll~~mi~~S--d-N~aa~~l~~~l----~~-------------------~~~~~~~~~~~~~~~t~l~~~~~~~~~~~ 141 (258) T 1ghp_A 88 KALIEASMTYS--D-NTANNKIIKEI----GG-------------------IKKVKQRLKELGDKVTNPVRYDIELQYYS 141 (258) T ss_dssp HHHHHHHHHHC--C-HHHHHHHHHHH----TC-------------------HHHHHHHHHHTTCCSCBCCSCTTGGGCCC T ss_pred HHHHHHHHHHC--C-HHHHHHHHHHH----CC-------------------CHHHHHHHHHCCHHHHCCCCCCCCCCCCC T ss_conf 99999998616--5-99999999981----89-------------------37889999962614322477667556888 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHH--HCCCCCCCCCC---E-- Q ss_conf 9873000079999999999825970777887551899997755445411331256678987--07871565221---1-- Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR--VGFPGKSGVGG---G-- 263 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~--VGlPaKSGVgG---g-- 263 (311) -....-..|..|++++..-|.++ +.+++...+....+|....-.+.-..-... +.+=.|+|-.+ . T Consensus 142 ~~~~~~~tTa~d~a~ll~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~ 213 (258) T 1ghp_A 142 PKSKKDTSTPAAFGKTLNKLIAN--------GKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRN 213 (258) T ss_dssp TTCCTTEECHHHHHHHHHHHTTS--------SSSCHHHHHHHHHHHHHCGGGTTTHHHHSCTTSEEEEEEEECSSTTCEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEE T ss_conf 99855654899999999999748--------8642688999999985482140123434798875887774887765278 Q ss_pred EEEEE--CCC---CEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 03343--785---179987532077898489999999999994 Q gi|254780186|r 264 ILAIV--PSK---ASIAVWSPGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 264 ilavv--Pg~---~gIav~SP~LD~~GNSv~G~~~le~ls~~l 301 (311) ..++| |++ ..|+|+...-+.... ...+++..+++.+ T Consensus 214 d~giv~~~~~~~~~vi~V~~~~~~~~~~--~~~~li~~is~~~ 254 (258) T 1ghp_A 214 DVAFVYPKGQSEPIVLVIFTNKDNKSDK--PNDKLISETAKSV 254 (258) T ss_dssp EEEEEECTTCCSCEEEEEEEECSSTTCC--CCHHHHHHHHHHH T ss_pred EEEEEEECCCCEEEEEEEEECCCCCCHH--HHHHHHHHHHHHH T ss_conf 9999998999748999999179986869--9999999999999 No 34 >2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1 Probab=85.48 E-value=0.32 Score=27.32 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=101.0 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCCCCCHH-HHHHHCCCCCCCCC Q ss_conf 4702899808-997887668786401999999999999996112--8-99999465765677204-44201148984763 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSGSSFDS-IVQLENENGIPRNP 110 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg~~FNS-i~~Le~~~g~P~NP 110 (311) -..||++.+. +|+++... .+.+|+.-|+.|+++...+++... + ...+.|-.++.-..-.+ ...+......+..- T Consensus 16 ~~~gv~v~dl~tG~~~~~n-~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ 94 (262) T 2cc1_A 16 VLIGLYAANLQSGRRITHR-PDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAE 94 (262) T ss_dssp EEEEEEEEETTTCCEEEES-TTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGCCSSCHHHHTTTTSEEEHHH T ss_pred CEEEEEEEECCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCEECCCCCEEEHHH T ss_conf 8699999999999888889-998498389999999999999755289986538997642303799740126898063999 Q ss_pred ----C----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC Q ss_conf ----1----11379999986448888899999999999987289986247899998511241279999999827888899 Q gi|254780186|r 111 ----F----VNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYK 182 (311) Q Consensus 111 ----m----iNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~d 182 (311) | -|..|.++...+.| . +.+-++++++ |-....+....... ....+. T Consensus 95 ll~~mi~~SdN~Aa~~L~~~~~g----~---~~~~~~~~~~-g~~~t~~~~~~~~~-----------------~~~~~~- 148 (262) T 2cc1_A 95 LCQAALQRSDNTAANLLLKTIGG----P---AAVTAFARSV-GDERTRLDRWEVEL-----------------NSAIPG- 148 (262) T ss_dssp HHHHHHHSCCHHHHHHHHHHHTH----H---HHHHHHHHHT-TCCSCCCCSCTTGG-----------------GGCCTT- T ss_pred HHHHHHHHCCHHHHHHHHHHCCC----C---HHHHHHHHHC-CHHHHCCCCCCCCC-----------------CCCCCC- T ss_conf 99999873447999999998499----5---4889999964-46661257665555-----------------678899- Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC- Q ss_conf 8999999998730000799999999998259707778875518999977554454113312566789870787156522- Q gi|254780186|r 183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVG- 261 (311) Q Consensus 183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVg- 261 (311) .-.-..|.+|++.+..-+..+ +.++++.......+|...--..-.+.+...+-+-.|+|-+ T Consensus 149 ----------~~~~~sTa~d~~~l~~~l~~~--------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~v~~KtG~~~ 210 (262) T 2cc1_A 149 ----------DPRDTSTPAALAVGYRAILAG--------DALSPPQRGLLEDWMRANQTSSMRAGLPEGWTTADKTGSGD 210 (262) T ss_dssp ----------CCTTEECHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHTCSCCSGGGGSCTTCEEEEEEEECS T ss_pred ----------CCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC T ss_conf ----------887764499999999999758--------85798999999999852737885444788861788861548 Q ss_pred -C--EEEEEE--CC--CCEEEEEC--CCCCCCCCCHHHHHHHHHHHHHH Q ss_conf -1--103343--78--51799875--32077898489999999999994 Q gi|254780186|r 262 -G--GILAIV--PS--KASIAVWS--PGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 262 -G--gilavv--Pg--~~gIav~S--P~LD~~GNSv~G~~~le~ls~~l 301 (311) + ..+++| |+ ++-++|++ |.=|...... .+++..+++.. T Consensus 211 ~~~~~d~g~v~~~~g~~~i~vv~~~~~~~~~~~~~~--~~li~~isr~v 257 (262) T 2cc1_A 211 YGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENL--RPLIGELTALV 257 (262) T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEESSSCTTCCCC--HHHHHHHHHHH T ss_pred CCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHH--HHHHHHHHHHH T ss_conf 885789999992899899999996899866058999--99999999999 No 35 >1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1 Probab=85.27 E-value=0.38 Score=26.87 Aligned_cols=182 Identities=16% Similarity=0.095 Sum_probs=90.8 Q ss_pred CCCCHHHHCCCHHHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHCCCCCCCCCH-HHHHH Q ss_conf 9828332059824702899808-9978876687864019999999999999961128-9999946576567720-44420 Q gi|254780186|r 24 ADYIPELAKVRIDHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-EIWKRVGREPSGSSFD-SIVQL 100 (311) Q Consensus 24 A~YIP~La~vdp~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~V~~~VG~ePSg~~FN-Si~~L 100 (311) +.-|.+|.+--.-.+||++.+. +|+++... .+.+|+..|+.|+++++.+|++..+ ++.++|-..+...... ++.. T Consensus 46 ~~~~~~~~~~~~~~~gv~~~D~~tG~~~~~n-~d~~~~~ASt~Kl~~a~~~l~~v~~g~ld~~v~i~~~~~~~~~~~~~- 123 (266) T 1alq_A 46 AKELNDLEKKYNAHIGVYALDTKSGKEVKFN-SDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILE- 123 (266) T ss_dssp CCCHHHHHHHHTCEEEEEEEETTTCCEEEES-TTSCEECGGGHHHHHHHHHHHSSCGGGTTCEEEECGGGCCSSCTTGG- T ss_pred HHHHHHHHHHHCCEEEEEEEECCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCCCCCC- T ss_conf 9999999997398699999999999888888-99835347899999999999972047877516753888633697310- Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH----------HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 11489847631113799999864488888999999999----------99987289986247899998511241279999 Q gi|254780186|r 101 ENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLN----------FMRGIAGDASIHIDSVVANSEIETGYRNFALA 170 (311) Q Consensus 101 e~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~----------~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala 170 (311) ...| . -+.---+....++... ....+.+.+ +++++ |.....++... . T Consensus 124 -~~~g---~-~~tl~dll~~mi~~Sd---N~Aa~~L~~~lGg~~~~~~~~~~~-G~~~t~l~~~~-------~------- 180 (266) T 1alq_A 124 -KYVG---K-DITLKALIEASMTYSD---NTANNKIIKEIGGIKKVKQRLKEL-GDKVTNPVRYE-------I------- 180 (266) T ss_dssp -GGTT---E-EEEHHHHHHHHHHHCC---HHHHHHHHHHHTCHHHHHHHHHHT-TCCSCCCCCCT-------T------- T ss_pred -CCCC---C-CEEHHHHHHHHHHCCH---HHHHHHHHHHHCCCHHHHHHHHHC-CHHHEECCCCC-------C------- T ss_conf -4689---7-2359999998775487---999999999977616899999974-73227626777-------6------- Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99982788889989999999987300007999999999982597077788755189999775544541133125667898 Q gi|254780186|r 171 NFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAY 250 (311) Q Consensus 171 ~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~ 250 (311) ........ ...-..|.+|++++..-|..+ ..++++..+..+.+|..+-.. .... T Consensus 181 ---~~~~~~~~-----------~~~n~tTa~d~a~ll~~l~~~--------~~ls~~~~~~l~~~m~~~~~~----~~~l 234 (266) T 1alq_A 181 ---ELNYYSPK-----------SKKDTSTPAAFGKTLNKLIAN--------GKLSKENKKFLLDLMLNNKSG----DTLI 234 (266) T ss_dssp ---GGGCCCTT-----------CCTTEECHHHHHHHHHHHTTS--------SSCCHHHHHHHHHHHHTCGGG----TTTH T ss_pred ---CCCCCCCC-----------CCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCC----CCHH T ss_conf ---55567778-----------744444999999999999857--------878999999999999639644----3005 Q ss_pred HHCCCC Q ss_conf 707871 Q gi|254780186|r 251 RVGFPG 256 (311) Q Consensus 251 ~VGlPa 256 (311) +-|+|. T Consensus 235 ~~~lP~ 240 (266) T 1alq_A 235 KDGVPK 240 (266) T ss_dssp HHHSCT T ss_pred HHCCCC T ss_conf 543999 No 36 >1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1 Probab=84.05 E-value=0.27 Score=27.78 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.8 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 4702899808-997887668786401999999999999996112 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) -.+||++.+. +|+.+. =+.+.+|+..|++|++++..+|++.. T Consensus 16 ~~~gv~v~dl~tg~~~~-~n~d~~~~~AS~~Kl~~a~~~l~~~~ 58 (266) T 1bsg_A 16 ARLGVYAYDTGSGRTVA-YRADELFPMCSVFKTLSSAAVLRDLD 58 (266) T ss_dssp SEEEEEEEETTTCCEEE-ESTTSCEECGGGGHHHHHHHHHHHTC T ss_pred CEEEEEEEECCCCCEEE-ECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 74999999899998899-88998052389999999999999987 No 37 >1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ... Probab=83.96 E-value=0.42 Score=26.55 Aligned_cols=99 Identities=14% Similarity=0.014 Sum_probs=62.5 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCE---- Q ss_conf 9999873000079999999999825970777887551899997755445411331256678987078715652211---- Q gi|254780186|r 188 KFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGG---- 263 (311) Q Consensus 188 d~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVgGg---- 263 (311) +.+.-+-++.+|..+++.+.+++||+|. .+++++++.++.+|.+.--.. ..+-+|+|-++- T Consensus 131 ~~~~~~g~~~iTPlq~a~~~~~iangg~-------~~sp~~~~~~~~~m~~~~~~g--------~~vagKTGTa~~g~~~ 195 (246) T 1k55_A 131 DKFWLEGQLRISAVNQVEFLESLYLNKL-------SASKENQLIVKEALVTEAAPE--------YLVHSKTGFSGVGTES 195 (246) T ss_dssp TTTTTTSSCCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEEEEETT--------EEEEEEEEECCCCCSS T ss_pred CCHHHCCCCCCCHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHH--------HHCCCEEEEEECCCCC T ss_conf 5344469865569999999999972998-------778899999999999877664--------2214445122205789 Q ss_pred ------EEEEECC---CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf ------0334378---51799875320778984899999999999948 Q gi|254780186|r 264 ------ILAIVPS---KASIAVWSPGLDNSGNSLLGAKALELLAIRTG 302 (311) Q Consensus 264 ------ilavvPg---~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~ 302 (311) .+.-+|. +..++|+-..=+..+-++++ ...+.+-+.++ T Consensus 196 ~~~~aWFvGf~p~~~p~~~~av~i~~~~~~~~~~a~-~i~~~il~~~g 242 (246) T 1k55_A 196 NPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRK-SIPTKIMESEG 242 (246) T ss_dssp SCEEEEEEEEEEETTEEEEEEEEEEESCGGGTTHHH-HHHHHHHHHTT T ss_pred CCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHH-HHHHHHHHHCC T ss_conf 985389999998799859999999779988758899-99999999726 No 38 >2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A* Probab=83.54 E-value=0.52 Score=25.96 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=99.0 Q ss_pred HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-H--HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCH Q ss_conf 7028998089-978876687864019999999999999961128-9--99994657656772044420114898476311 Q gi|254780186|r 37 HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-E--IWKRVGREPSGSSFDSIVQLENENGIPRNPFV 112 (311) Q Consensus 37 ~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~--V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmi 112 (311) ..|+++.+.+ |+++... .+.+|+..|+.|+++++.++++..+ + .-++|-..+.-....+-.......| ..+- T Consensus 35 ~~~v~v~dl~tg~~~~~n-~d~~~~~AS~~Kl~~~~~~l~~v~~G~l~ld~~v~i~~~~~~~~~~~~~~~~~g---~~~t 110 (298) T 2j9o_A 35 TAGLYFFNLDSGASLNVG-GDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMRPDLIAPEAGTLQYQKPN---SQYA 110 (298) T ss_dssp EEEEEEEETTTCEEEEEB-TTSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEEECCGGGCCCSSCSGGGSCTT---CEEE T ss_pred EEEEEEEECCCCCEEEEC-CCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHCCCCCCCCEECCCC---CEEE T ss_conf 489999989999889988-995132557999999999999987499896556687377605799752000699---7668 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH----------HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 137999998644888889999999----------9999987289986247899998511241279999999827888899 Q gi|254780186|r 113 NAGAIVVSDAVLGSSSADDAIENF----------LNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYK 182 (311) Q Consensus 113 NAGAI~~~sli~~~~~~~~~~~~i----------~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~d 182 (311) ---+....++.+ + ....+.+ -.+++++ |-....+++ -+.+ T Consensus 111 -l~~ll~~mi~~S--d-N~Aa~~L~~~~g~~~~~n~~~~~~-G~~~t~~~~-------------------------~~~~ 160 (298) T 2j9o_A 111 -ALEVAELMITIS--D-NTATNMIIDRLGGAAELNQQFQEW-GLENTVINN-------------------------PEPD 160 (298) T ss_dssp -HHHHHHHHHHSC--C-HHHHHHHHHHTTCHHHHHHHHHHT-TCSSCBCCS-------------------------CTTC T ss_pred -HHHHHHHHHHHH--H-HHHHHHHHHHHCCCHHHHHHHHHC-CCCCEEECC-------------------------CCCC T ss_conf -999999999854--4-889999999957749999999976-997715227-------------------------8876 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC------C Q ss_conf 8999999998730000799999999998259707778875518999977554454113312566789870787------1 Q gi|254780186|r 183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP------G 256 (311) Q Consensus 183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP------a 256 (311) .. -.-..|.++++++...|.++ ..++++.+..+..+|.....- ...+-|+| . T Consensus 161 ~~---------~~~~~ta~d~~~ll~~l~~~--------~~~~~~~~~~l~~~m~~~~~~-----~~i~~~lp~~~~v~~ 218 (298) T 2j9o_A 161 MK---------GTNTTSPRDLATLMLKIGQG--------EILSPRSRDRLLDIMRRTVTN-----TLLPAGLGKGATIAH 218 (298) T ss_dssp TT---------CCSEECHHHHHHHHHHHHTT--------CSSCHHHHHHHHHHHTSCSCC-----SSGGGGSCTTCEEEE T ss_pred CC---------CCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCC-----CCHHHHCCCCCEEEE T ss_conf 56---------68867999999999999818--------978989999999999708787-----630231899988987 Q ss_pred CCCCCCE---EEEE--EC-C-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5652211---0334--37-8-5179987532077898489999999999994 Q gi|254780186|r 257 KSGVGGG---ILAI--VP-S-KASIAVWSPGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 257 KSGVgGg---ilav--vP-g-~~gIav~SP~LD~~GNSv~G~~~le~ls~~l 301 (311) |+|-.++ -+++ .| | ++-++|+.= .....-.+..++..+++.+ T Consensus 219 KtG~~~~~~~d~giv~~~~g~~yi~avl~~---~~~~~~~~~~~i~~i~~~v 267 (298) T 2j9o_A 219 KTGDIGIVVGDAGMVDMPNGQRYVAAMMVK---RPYNDPRGSELIRQVSRMV 267 (298) T ss_dssp EEEECSSEEEEEEEEECTTSCEEEEEEEEE---CSTTCHHHHHHHHHHHHHH T ss_pred ECCCCCCCCEEEEEEEECCCCEEEEEEEEC---CCCCCHHHHHHHHHHHHHH T ss_conf 635612610589999947998899999947---9976188999999999999 No 39 >1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A* Probab=82.99 E-value=0.94 Score=24.28 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=33.7 Q ss_pred CEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 028998089-97887668786401999999999999996112 Q gi|254780186|r 38 FGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 38 fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) .|+.+.+.+ |+++-.=+.+.+|+.-|++|++++..++++.. T Consensus 19 vg~~v~D~~tG~~l~~~n~d~~~~~AS~~Kl~i~~~~l~~i~ 60 (265) T 1n9b_A 19 VGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVD 60 (265) T ss_dssp EEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999993866788998544488999999999999877 No 40 >1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A Probab=82.83 E-value=0.84 Score=24.59 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=34.5 Q ss_pred HCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 702899808-997887668786401999999999999996112 Q gi|254780186|r 37 HFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 37 ~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) ..|+++.+. +|++++. +.+.+|+..|++|++++..++++.. T Consensus 18 ~~gv~v~Dl~tg~~~~~-n~d~~~~~AS~~Kl~~a~~~l~~i~ 59 (265) T 1bue_A 18 RIGVYALDTGSGKSFSY-RANERFPLCSSFKGFLAAAVLKGSQ 59 (265) T ss_dssp EEEEEEEETTTCCEEEE-STTSCEECGGGGHHHHHHHHHHHHH T ss_pred EEEEEEEECCCCCEEEE-CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 79999999999988888-9998587389999999999999876 No 41 >1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes} Probab=82.64 E-value=1.7 Score=22.54 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=36.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEE--C----------CCCCCCCHHHHHHHHHH Q ss_conf 79999999999977607999998283320598247028998089978876--6----------87864019999999999 Q gi|254780186|r 3 LKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSV--G----------ESEFLFSIQSISKVFLL 70 (311) Q Consensus 3 ~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~--G----------D~~~~FsiqSisK~f~l 70 (311) +++.+|++++..... .++ | .+.++|. .+|+++.. | +.++.|.|-||||+|+- T Consensus 9 ~~~~~d~~i~~~~~~---~~i----p--------G~sv~v~-~~g~~~~~~~G~~d~~~~~~~t~~t~f~iaSiSK~~ta 72 (359) T 1zkj_A 9 LRPVVDASIQPLLKE---HRI----P--------GMAVAVL-KDGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTA 72 (359) T ss_dssp THHHHHHHHHHHHHH---TTC----S--------EEEEEEE-ETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHH T ss_pred HHHHHHHHHHHHHHH---CCC----C--------EEEEEEE-ECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHH T ss_conf 899999999999984---799----8--------5999999-99999998562021566998999998963237999999 Q ss_pred HHHHHH Q ss_conf 999961 Q gi|254780186|r 71 TIALRK 76 (311) Q Consensus 71 ~~al~~ 76 (311) .+++.. T Consensus 73 ~~i~~l 78 (359) T 1zkj_A 73 TLGAYA 78 (359) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 42 >3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp} Probab=82.25 E-value=0.6 Score=25.54 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=92.5 Q ss_pred HCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCC---CCCHHHHHHHCCCCCCCC Q ss_conf 702899808-997887668786401999999999999996112--8-999994657656---772044420114898476 Q gi|254780186|r 37 HFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSG---SSFDSIVQLENENGIPRN 109 (311) Q Consensus 37 ~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg---~~FNSi~~Le~~~g~P~N 109 (311) .+||++.+. +|+++.. +.+.+|+.-|+.|++++..++++.. + ...++|-..+.. ..-.++.. ...+ T Consensus 38 ~~gv~~~Dl~tG~~~~~-n~d~~~p~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~i~~~~~~~~~~~~~~~--~~~~---- 110 (290) T 3p09_A 38 KIGIYTLNTDDKTNIKY-NESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPITA--KNVG---- 110 (290) T ss_dssp EEEEEEECC----CCEE-STTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEECCHHHHTTCCCCTTGG--GCTT---- T ss_pred EEEEEEEECCCCCEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCEE--ECCC---- T ss_conf 39999998999988988-8997504267999999999999865489776651685299951368875434--3488---- Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHH----------HHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC Q ss_conf 31113799999864488888999999----------99999987289986247899998511241279999999827888 Q gi|254780186|r 110 PFVNAGAIVVSDAVLGSSSADDAIEN----------FLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 (311) Q Consensus 110 PmiNAGAI~~~sli~~~~~~~~~~~~----------i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~ 179 (311) ...-- ......++.. + ...... +-+|++++ |.....++.....-.... T Consensus 111 ~~~~~-~~l~~~~~~S--d-N~aa~~L~~~~gg~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~----------------- 168 (290) T 3p09_A 111 KTLTI-SQLNYAAILS--D-SPASNILVRELGGLQNLNKFIKKL-GDNDTIITADEPEINYTQ----------------- 168 (290) T ss_dssp SEEEH-HHHHHHHHTT--C-HHHHHHHHHHHTCHHHHHHHHHHT-TCCSCBCCCCTTGGGCCC----------------- T ss_pred CEEHH-HHHHHCCCCC--C-HHHHHHHHHHHCCCHHHHHHHHHC-CCHHHHCCCCCCCCCCCC----------------- T ss_conf 36569-9997504467--8-299999999963854899999983-972321267763223578----------------- Q ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCC Q ss_conf 899899999999873000079999999999825970777887551899997755445411331256678987078--715 Q gi|254780186|r 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF--PGK 257 (311) Q Consensus 180 ~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl--PaK 257 (311) .. ...-..|++|++++..-|.++ ..+++...+....+|..+--...-......-|. =-| T Consensus 169 ~~-----------~~~n~tTa~dla~ll~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~K 229 (290) T 3p09_A 169 PH-----------SNINKTTPKAITKDIYKLAFG--------NILDKKHKDIFIKYLQDNNTGANRIAFSMPKDWIIGDK 229 (290) T ss_dssp TT-----------BCTTEECHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHHCCTTTTTGGGGSCTTSEEEEE T ss_pred CC-----------CCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEE T ss_conf 99-----------755634899999999999718--------98898999999999843851322110148988779960 Q ss_pred CCCC---CE--EEEEE--CC--CCEEEEEC Q ss_conf 6522---11--03343--78--51799875 Q gi|254780186|r 258 SGVG---GG--ILAIV--PS--KASIAVWS 278 (311) Q Consensus 258 SGVg---Gg--ilavv--Pg--~~gIav~S 278 (311) .|-. |. .+++| |+ .+-++|+. T Consensus 230 tG~~~~~g~~~d~giv~~~~g~~yii~V~~ 259 (290) T 3p09_A 230 TGTCGQYAATNDVAIIWPKNQQPIALGILY 259 (290) T ss_dssp EEECSSTTCEEEEEEEECTTSCCEEEEEEE T ss_pred ECCCCCCCCEEEEEEEECCCCCEEEEEEEC T ss_conf 356567875789999982899879999990 No 43 >2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ... Probab=82.19 E-value=0.67 Score=25.25 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=100.8 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CH-HHHHHHCCCCCCCC-CHHHHHHHCCCCCCCCC Q ss_conf 4702899808-99788766878640199999999999999611--28-99999465765677-20444201148984763 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKF--DE-EIWKRVGREPSGSS-FDSIVQLENENGIPRNP 110 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~--G~-~V~~~VG~ePSg~~-FNSi~~Le~~~g~P~NP 110 (311) ..+||++.+. +|+++... .+.+|+..|+.|++++..++++. |+ ..-++|-..|+... ..+.... ..| . T Consensus 18 ~~~~v~v~D~~tg~~~~~n-~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~~~~~~~~~~~~~~~~--~~g----~ 90 (263) T 2p74_A 18 GRLGVALIDTADNTQVLYR-GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEK--HVN----G 90 (263) T ss_dssp SEEEEEEEETTTTEEEEES-TTSCEECGGGGHHHHHHHHHHHHTTCTTGGGCEEECCGGGCCSCCTTGGG--GTT----S T ss_pred CEEEEEEEECCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCC--CCC----C T ss_conf 8699999999999889988-99707527899999999999987638999774699606660279984103--679----8 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH----------HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf 11137999998644888889999999----------99999872899862478999985112412799999998278888 Q gi|254780186|r 111 FVNAGAIVVSDAVLGSSSADDAIENF----------LNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR 180 (311) Q Consensus 111 miNAGAI~~~sli~~~~~~~~~~~~i----------~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~ 180 (311) -+.-..+....++... .+..+.+ -++++++ |-....+.... .+ + ....+ T Consensus 91 ~~~~~~ll~~mi~~Sd---N~Aa~~L~~~igg~~~~~~~~~~~-g~~~t~~~~~~-------~~--------~--~~~~~ 149 (263) T 2p74_A 91 TMTLAELSAAALQYSD---NTAMNKLIAQLGGPGGVTAFARAI-GDETFRLDRTE-------PT--------L--NTAIP 149 (263) T ss_dssp EEEHHHHHHHHHHHCC---HHHHHHHHHHTTSHHHHHHHHHHT-TCSSCCCCCCT-------TG--------G--GCCCT T ss_pred CCCHHHHHHHHHHHCC---HHHHHHHHHHHCCCHHHHHHHHHC-CCCCEECCCCC-------CC--------C--CCCCC T ss_conf 4319999999987444---799999999848841799999976-96338737876-------44--------5--67889 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC----- Q ss_conf 998999999998730000799999999998259707778875518999977554454113312566789870787----- Q gi|254780186|r 181 YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP----- 255 (311) Q Consensus 181 ~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP----- 255 (311) .+. .-..|.+|++++..-|.. .+.+++..+..++.+|..--.... ..+-++| T Consensus 150 ~~~-----------~~~~T~~d~a~ll~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v 206 (263) T 2p74_A 150 GDP-----------RDTTTPRAMAQTLRQLTL--------GHALGETQRAQLVTWLKGNTTGAA----SIRAGLPTSWTA 206 (263) T ss_dssp TCC-----------TTEECHHHHHHHHHHHHT--------SSSSCHHHHHHHHHHHHTCSSCTT----TGGGGSCTTCEE T ss_pred CCC-----------CCCCCHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCEE T ss_conf 976-----------663369999999999983--------887888999999999855866654----323337888878 Q ss_pred -CCCCCCC----EEEEEE--CCC--CEEEEEC--CCCCCCCCCHHHHHHHHHHHHHH Q ss_conf -1565221----103343--785--1799875--32077898489999999999994 Q gi|254780186|r 256 -GKSGVGG----GILAIV--PSK--ASIAVWS--PGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 256 -aKSGVgG----gilavv--Pg~--~gIav~S--P~LD~~GNSv~G~~~le~ls~~l 301 (311) .|+|-.+ ..+++| ||+ +.+++++ +.-|..- ..+++..+++.+ T Consensus 207 ~~KTG~~~~~~~~dvgiv~~~g~~~~iv~v~~~~~~~~~~~----~~~~i~~i~r~v 259 (263) T 2p74_A 207 GDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAES----RRDVLASAARII 259 (263) T ss_dssp EEEEEEETTTEEEEEEEEECTTSCCEEEEEEEECSSTTCCC----CHHHHHHHHHHH T ss_pred EEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHH----HHHHHHHHHHHH T ss_conf 88405867875789999996999689999994799989799----999999999999 No 44 >1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A* Probab=81.33 E-value=0.6 Score=25.54 Aligned_cols=120 Identities=10% Similarity=-0.032 Sum_probs=68.7 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 99999827888899899999999873000079999999999825970777887551899997755445411331256678 Q gi|254780186|r 169 LANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDF 248 (311) Q Consensus 169 la~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~f 248 (311) +..+++.+|.-..++....+.+.-+=++.+|..++|.+.+++||+|. .+++++.+.+..+|..---. | T Consensus 116 ~~~~~~~~G~G~~~~~~~~~~~~~~g~~~itPlq~a~~~~~ian~g~-------~~~~~~~~~~~~~~~~~~~~---g-- 183 (254) T 1k38_A 116 ARRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRNEL-------PFRVEHQRLVKDLMIVEAGR---N-- 183 (254) T ss_dssp HHHHHHHTTCTTCCCCC--CCTTTTSSCCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEEEEET---T-- T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE-------ECCHHHHHHHHHHHHHHHHC---C-- T ss_conf 99999985999998876534400178743759999999999976994-------05800679999999883425---9-- Q ss_pred HHHHCCCCCCCCCC---EEEEEECC---CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 98707871565221---10334378---517998753207789848999999999999486 Q gi|254780186|r 249 AYRVGFPGKSGVGG---GILAIVPS---KASIAVWSPGLDNSGNSLLGAKALELLAIRTGW 303 (311) Q Consensus 249 a~~VGlPaKSGVgG---gilavvPg---~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l 303 (311) ..+=+|+|-.. =.++-+|. +..++++--.-+....+.....+.+.+-+.++. T Consensus 184 ---~~vaGKTGTa~~~~WFvG~~p~~~p~~~~av~i~~~~~~~~~~~a~~i~~~il~~l~~ 241 (254) T 1k38_A 184 ---WILRAKTGWEGRMGWWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEA 241 (254) T ss_dssp ---EEEEEEEEESSSEEEEEEEEEETTEEEEEEEEEECTTGGGGTHHHHHHHHHHHHHTTS T ss_pred ---CEEEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf ---7577763689867689999986998699999997799977289999999999998489 No 45 >2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} Probab=81.17 E-value=0.42 Score=26.56 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=103.8 Q ss_pred HHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCC Q ss_conf 47028998089-97887668786401999999999999996112--8-99999465765677204442011489847631 Q gi|254780186|r 36 DHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSGSSFDSIVQLENENGIPRNPF 111 (311) Q Consensus 36 ~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPm 111 (311) -..||++.+.+ |+.+. -+.+.+|+.-|+.|++++..++++.. + ...++|-..+....-.+-.......+ .- T Consensus 37 ~~~gv~v~d~~tg~~~~-~n~d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~~~~~~~~~~~~~~----~~ 111 (287) T 2qpn_A 37 AQIGVAIVDPQGEIVAG-HRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLAS----GH 111 (287) T ss_dssp CEEEEEEECTTCCEEEE-ESTTSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGCCSSCHHHHHHTTT----TE T ss_pred CEEEEEEEECCCCCEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCEEEECCC----CE T ss_conf 76999999899994898-76997425458999999999999876388776615750588852579750342589----78 Q ss_pred HHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH Q ss_conf 113799999864488888999-------9999999998728998624789999851124127999999982788889989 Q gi|254780186|r 112 VNAGAIVVSDAVLGSSSADDA-------IENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184 (311) Q Consensus 112 iNAGAI~~~sli~~~~~~~~~-------~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~ 184 (311) +--.-+....++.+..++... .+.+-++++++ |-....++....... . .. T Consensus 112 ~tl~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~-g~~~~~l~~~~~~~~---------------~--~~----- 168 (287) T 2qpn_A 112 MTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKI-GDSVSRLDRKEPEMG---------------D--NT----- 168 (287) T ss_dssp EEHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHT-TCSSCCCCCCTTGGG---------------C--CC----- T ss_pred EEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHH-CCHHHHCCCCCCCCC---------------C--CC----- T ss_conf 789999999999552699999999948955789999982-634331367776556---------------6--78----- Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC------CCC Q ss_conf 99999998730000799999999998259707778875518999977554454113312566789870787------156 Q gi|254780186|r 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP------GKS 258 (311) Q Consensus 185 ~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP------aKS 258 (311) .....-..|.+|++.+...|.++ ..+++...+..+.+|...--+..- .+-++| .|+ T Consensus 169 ------~~~~~~~tta~d~~~ll~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~p~~~~v~~KT 230 (287) T 2qpn_A 169 ------PGDLRDTTTPIAMARTVAKVLYG--------GALTSTSTHTIERWLIGNQTGDAT----LRAGFPKDWVVGEKT 230 (287) T ss_dssp ------TTCCTTEECHHHHHHHHHHHHTS--------SSSCHHHHHHHHHHHHTCSSCTTS----GGGGSCTTSEEEEEE T ss_pred ------CCCCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCEECHHH----HHCCCCCCCEEEEEE T ss_conf ------89865640799999999998744--------334789999999997368352223----430489897689960 Q ss_pred CCC--C--EEEEEE--CC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 522--1--103343--78-5179987532077898489999999999994 Q gi|254780186|r 259 GVG--G--GILAIV--PS-KASIAVWSPGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 259 GVg--G--gilavv--Pg-~~gIav~SP~LD~~GNSv~G~~~le~ls~~l 301 (311) |-+ + ..++++ || ..-|+|+.=.- ..+--....++..+++.+ T Consensus 231 G~~~~~~~~dvgiv~~~~~~~ii~Vl~~~~--~~~~~~~~~~i~~i~~~v 278 (287) T 2qpn_A 231 GTCANGGRNDIGFFKAQERDYAVAVYTTAP--KLSAVERDELVASVGQVI 278 (287) T ss_dssp EEETTTEEEEEEEEEETTEEEEEEEEEECT--TSCHHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEEEEEEECCEEEEEEEEECCC--CCCHHHHHHHHHHHHHHH T ss_conf 536786559999999899569999992599--999899999999999999 No 46 >3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} Probab=80.90 E-value=1.3 Score=23.37 Aligned_cols=219 Identities=18% Similarity=0.170 Sum_probs=100.2 Q ss_pred HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCH-H--HHHHHCCCCCCCC-CHHHHHHHCCCCCCCCCC Q ss_conf 7028998089-978876687864019999999999999961128-9--9999465765677-204442011489847631 Q gi|254780186|r 37 HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFDE-E--IWKRVGREPSGSS-FDSIVQLENENGIPRNPF 111 (311) Q Consensus 37 ~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G~-~--V~~~VG~ePSg~~-FNSi~~Le~~~g~P~NPm 111 (311) ..|+++.+.+ |+++.. +.+.+|+.-|++|++++..++++..+ + .-++|-..+.... .-++..+.. |.. T Consensus 43 ~~gv~v~Dl~tG~~~~~-n~d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v~i~~~~~~~~s~~~~~~~--g~~---- 115 (294) T 3dw0_A 43 SIGVYAMDTGSGATVSY-RAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYL--TTG---- 115 (294) T ss_dssp EEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEECCCGGGCCSSCHHHHHTT--TTC---- T ss_pred EEEEEEEECCCCCEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCC--CCC---- T ss_conf 69999998999988678-89973422559999999999998864998878369964787037997210357--886---- Q ss_pred HHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH Q ss_conf 113799999864488888999-------9999999998728998624789999851124127999999982788889989 Q gi|254780186|r 112 VNAGAIVVSDAVLGSSSADDA-------IENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184 (311) Q Consensus 112 iNAGAI~~~sli~~~~~~~~~-------~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~ 184 (311) +.-..+....++.+...+... .+.+-+|++++ |-....+..... +. ....+.+. T Consensus 116 ~tv~dLl~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~-g~~~~~~~~~~~-------~~----------~~~~~~~~- 176 (294) T 3dw0_A 116 MTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSI-GDTTFRLDRWEL-------EL----------NSAIPGDA- 176 (294) T ss_dssp EEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHT-TCSSCBCCCCTT-------GG----------GCCCTTCC- T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHCCCCCCC-------CC----------CCCCCCCC- T ss_conf 679999999997375999999999867751699999980-733320478876-------44----------58899875- Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC------CCC Q ss_conf 99999998730000799999999998259707778875518999977554454113312566789870787------156 Q gi|254780186|r 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP------GKS 258 (311) Q Consensus 185 ~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP------aKS 258 (311) .-..|.++++++..-|.. + +.+++...+..+..|...-..+. ..+.++| .|+ T Consensus 177 ----------~n~~t~~d~a~~l~~l~~-------~-~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~Kt 234 (294) T 3dw0_A 177 ----------RDTSSPRAVTESLQKLTL-------G-SALAAPQRQQFVDWLKGNTTGNH----RIRAAVPADWAVGDKT 234 (294) T ss_dssp ----------TTEECHHHHHHHHHHHHT-------S-SSSCHHHHHHHHHHHHTCSSCTT----TGGGGSCTTSEEEEEE T ss_pred ----------CCCHHHHHHHHHHHHHHH-------C-CCCCHHHHHHHHHHHHCCCCCCC----CHHCCCCCCCEEEEEE T ss_conf ----------451559999999999983-------8-75346789999998725754775----1101488997899873 Q ss_pred CCCC---E--EEEEE--CC--CCEEEEEC--CCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 5221---1--03343--78--51799875--3207789848999999999999486 Q gi|254780186|r 259 GVGG---G--ILAIV--PS--KASIAVWS--PGLDNSGNSLLGAKALELLAIRTGW 303 (311) Q Consensus 259 GVgG---g--ilavv--Pg--~~gIav~S--P~LD~~GNSv~G~~~le~ls~~l~l 303 (311) |-.+ . .+++| |+ .+-|+|+. |.-|...+.-.=-.+-+.+-+.|+. T Consensus 235 G~~~~~g~~~dvgiv~~~~~~~~iiaV~~~~~~~~~~~~~~li~~iar~v~~~l~~ 290 (294) T 3dw0_A 235 GTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVIAAAARLALEGLGV 290 (294) T ss_dssp EECSSTTCEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHHHHHHHHHHHHTTC T ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 13678764889999993899879999991799999899999999999999999723 No 47 >1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1 Probab=79.38 E-value=0.48 Score=26.17 Aligned_cols=215 Identities=17% Similarity=0.187 Sum_probs=102.5 Q ss_pred CEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCCCC-CHHHHHHHCCCCCCCCCCH Q ss_conf 02899808-997887668786401999999999999996112--8-99999465765677-2044420114898476311 Q gi|254780186|r 38 FGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSGSS-FDSIVQLENENGIPRNPFV 112 (311) Q Consensus 38 fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg~~-FNSi~~Le~~~g~P~NPmi 112 (311) +||++.+. +|++++. +.+.+|+.-|++|++++..++++.- + ...++|-..+.... ..++..+......+.- T Consensus 21 ~gv~v~d~~tg~~~~~-n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~i~~~~~~~~~~~~~~~~~~g~~~s~~--- 96 (271) T 1hzo_A 21 LGVALINTEDNSQITY-RGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLA--- 96 (271) T ss_dssp EEEEEEETTTTEEEEE-STTSCEECGGGGHHHHHHHHHHHHHHSTTGGGCEECCCGGGCCSCCTTGGGCTTTCEEHH--- T ss_pred EEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHH--- T ss_conf 9999998999998998-899707238899999999999974538988785599759996257875334689851099--- Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH----------HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 1379999986448888899999999----------999987289986247899998511241279999999827888899 Q gi|254780186|r 113 NAGAIVVSDAVLGSSSADDAIENFL----------NFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYK 182 (311) Q Consensus 113 NAGAI~~~sli~~~~~~~~~~~~i~----------~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~d 182 (311) -+....++... .+..+.+. .+++++ |-....++...... ....+.+ T Consensus 97 ---~ll~~mi~~Sd---N~Aa~~L~~~~gg~~~~~~~~~~~-g~~~~~l~~~~~~~-----------------~~~~~~~ 152 (271) T 1hzo_A 97 ---ELSAATLQYSD---NTAMNKILDYLGGPAKVTQFARSI-NDVTYRLDRKEPEL-----------------NTAIHGD 152 (271) T ss_dssp ---HHHHHHHHTCC---HHHHHHHHHHHTSHHHHHHHHHHT-TCSSCCCCCCTTGG-----------------GCCCTTC T ss_pred ---HHHHHHHHHCC---HHHHHHHHHHHCCCHHHHHHHHHH-CCHHHHCCCCCCCC-----------------CCCCCCC T ss_conf ---99999998544---499999999836907899999993-63433146776545-----------------5678998 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCC Q ss_conf 899999999873000079999999999825970777887551899997755445411331256678987078--715652 Q gi|254780186|r 183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF--PGKSGV 260 (311) Q Consensus 183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl--PaKSGV 260 (311) -.-..|++|++++..-|..+ ..++++.....+.+|..+-..+.-......-|. =.|+|- T Consensus 153 -----------~~~~tTa~d~a~ll~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~ 213 (271) T 1hzo_A 153 -----------PRDTTSPIAMAKSLQALTLG--------DALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGS 213 (271) T ss_dssp -----------CTTEECHHHHHHHHHHHHTS--------SSSCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEE T ss_pred -----------CCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEECC T ss_conf -----------76743899999999999738--------86566789999999827763663333457861599998278 Q ss_pred C--CE--EEEEE--CC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 2--11--03343--78--5179987532077898489999999999994 Q gi|254780186|r 261 G--GG--ILAIV--PS--KASIAVWSPGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 261 g--Gg--ilavv--Pg--~~gIav~SP~LD~~GNSv~G~~~le~ls~~l 301 (311) + |+ .+++| |+ .+-|+|++=.-. .+.-....++..+++.. T Consensus 214 ~~~~~~~d~giv~~~~~~~yiv~v~~~~~~--~~~~~~~~~i~~ia~~v 260 (271) T 1hzo_A 214 GDYGTTNDIAVIWPENHAPLILVVYFTQQE--QNAKYRKDIIAKAAEIV 260 (271) T ss_dssp ETTTEEEEEEEEECTTSCCEEEEEEEECSS--TTCCCCHHHHHHHHHHH T ss_pred CCCCCEEEEEEEEECCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHHH T ss_conf 777747999999938999899999957999--99799999999999999 No 48 >1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A Probab=78.58 E-value=0.68 Score=25.21 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=102.7 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCC Q ss_conf 4702899808-997887668786401999999999999996112--8-99999465765677204442011489847631 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSGSSFDSIVQLENENGIPRNPF 111 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPm 111 (311) -..||++.+. .|+++.. +.+.+|+.-|++|++++..++++.. + ...+++-..+......|-..- ... +.- T Consensus 21 ~~~gv~v~D~~tG~~~~~-n~d~~~~~AS~~Kl~~~~a~l~~~~~g~l~~~~~~~~~~~~~~~~s~~~~-~~~----g~~ 94 (271) T 1g6a_A 21 ARIGVSVLDTQNGEYWDY-NGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIE-KQV----GQA 94 (271) T ss_dssp CEEEEEEEETTTTEEEEE-STTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCGGGCCSSCTTGG-GCT----TSE T ss_pred CEEEEEEEECCCCCEEEE-CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCC-CCC----CCE T ss_conf 829999998999988898-99974842899999999999999863998867527864899605998401-268----972 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHH----------HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCC Q ss_conf 11379999986448888899999999----------99998728998624789999851124127999999982788889 Q gi|254780186|r 112 VNAGAIVVSDAVLGSSSADDAIENFL----------NFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRY 181 (311) Q Consensus 112 iNAGAI~~~sli~~~~~~~~~~~~i~----------~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~ 181 (311) +.---+....++... ....+.+. .|++++ |-....++........ ..+. T Consensus 95 ~t~~~ll~~~l~~Sd---N~A~~~L~~~lg~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-----------------~~~~ 153 (271) T 1g6a_A 95 ITLDDACFATMTTSD---NTAANIILSAVGGPKGVTDFLRQI-GDKETRLDRIEPDLNE-----------------GKLG 153 (271) T ss_dssp EEHHHHHHHHHHHCC---HHHHHHHHHHTTHHHHHHHHHHHT-TCSSCBCCCCTTGGGC-----------------CCTT T ss_pred EEHHHHHHHHHHCCC---HHHHHHHHHHHCCCHHHHHHHHHC-CCHHHHCCCCCCCCCC-----------------CCCC T ss_conf 469999988774483---799999999847954899999983-7443322677765557-----------------8899 Q ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHH--HCCCCCCC Q ss_conf 9899999999873000079999999999825970777887551899997755445411331256678987--07871565 Q gi|254780186|r 182 KIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR--VGFPGKSG 259 (311) Q Consensus 182 dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~--VGlPaKSG 259 (311) ...-..|..+++++...|..+ ..+++.....++..|...-.......+..- +-+-.|+| T Consensus 154 -----------~~~~~~t~~~~~~l~~~l~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KtG 214 (271) T 1g6a_A 154 -----------DLRDTTTPKAIASTLNKFLFG--------SALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADKSG 214 (271) T ss_dssp -----------CCTTEECHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHTCSSCTTTGGGGCCTTCEEEEEEE T ss_pred -----------CCCCCCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf -----------733340699999999999837--------7433678999999985261066544344788875999824 Q ss_pred CCC----EEEEEE--CCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 221----103343--785--179987532077898489999999999994 Q gi|254780186|r 260 VGG----GILAIV--PSK--ASIAVWSPGLDNSGNSLLGAKALELLAIRT 301 (311) Q Consensus 260 VgG----gilavv--Pg~--~gIav~SP~LD~~GNSv~G~~~le~ls~~l 301 (311) -+. ..++++ |++ +-|+|+.= +...+.-....++..+++.+ T Consensus 215 ~~~~~~~~~~giv~~~~~~~yviaV~~~--~~~~~~~~~~~~i~~is~~i 262 (271) T 1g6a_A 215 AGGFGARSITAVVWSEHQAPIIVSIYLA--QTQASMEERNDAIVKIGHSI 262 (271) T ss_dssp ECGGGCEEEEEEEEETTEEEEEEEEEEE--SCCCCHHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEC--CCCCCHHHHHHHHHHHHHHH T ss_conf 1588877899999968998899999936--99999899999999999999 No 49 >1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1 Probab=78.01 E-value=0.9 Score=24.40 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=34.2 Q ss_pred HHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 47028998089-97887668786401999999999999996112 Q gi|254780186|r 36 DHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 36 ~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) -.+||.+.+.+ |+.++. +.+.+|+.-|+.|+++...+|++.. T Consensus 18 ~~~gv~v~~~~~~~~~~~-n~~~~~~~AS~~Kl~~a~~~l~~i~ 60 (282) T 1e25_A 18 ATVGVAVWGPDDLEPLLI-NPFEKFPMQSVFKLHLAMLVLHQVD 60 (282) T ss_dssp SEEEEEEECTTCSSCEEE-STTCCEECGGGHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 959999998999818998-8998455489999999999999987 No 50 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* Probab=77.67 E-value=2.8 Score=21.17 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=41.0 Q ss_pred HHCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHH Q ss_conf 47028998089-97887668786401999999999999996112-89999 Q gi|254780186|r 36 DHFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEIWK 83 (311) Q Consensus 36 ~~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V~~ 83 (311) ..+||.|.+.+ |++.-.-+.+.+|.--|+.|.|+-+.||+.+| +.-|+ T Consensus 24 a~~gi~V~d~~tg~~l~~~n~~~~~~PAS~~Kl~Ta~aAL~~LG~d~rf~ 73 (462) T 1w5d_A 24 AMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFT 73 (462) T ss_dssp CEEEEEEEETTTCCEEEEESTTSCBCCGGGGHHHHHHHHHHHHCTTCCCE T ss_pred CEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 76899999899998964508999758679999999999998619997588 No 51 >1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A Probab=76.89 E-value=0.64 Score=25.39 Aligned_cols=141 Identities=15% Similarity=0.074 Sum_probs=74.4 Q ss_pred CEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC---H-HH------HH-HHCCCCCCCCCH-----HHHHHH Q ss_conf 02899808997887668786401999999999999996112---8-99------99-946576567720-----444201 Q gi|254780186|r 38 FGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD---E-EI------WK-RVGREPSGSSFD-----SIVQLE 101 (311) Q Consensus 38 fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G---~-~V------~~-~VG~ePSg~~FN-----Si~~Le 101 (311) -+|.+-...|+++..-+.+.++++-|++|.++..++|++.. + +| .+ -...+.|.-.+. ++.+|- T Consensus 10 ~aiv~d~~tG~vL~~kn~~~~~~pASlTKlmTa~~~l~~~~l~ld~~vti~~~~~~~~~~~~~s~~~l~~G~~~tv~dLl 89 (262) T 1es5_A 10 GGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVTVRQLL 89 (262) T ss_dssp EEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHTCTTCCTTCEEECCHHHHHHHHHTTCCCCCCCTTCEEEHHHHH T ss_pred EEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCEEEHHHHH T ss_conf 89999999995911269099887788999999999998089998878998476766764078725622599897799999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCC Q ss_conf 14898476311137999998644888889999999999998728998624789999851124127999999982788889 Q gi|254780186|r 102 NENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRY 181 (311) Q Consensus 102 ~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~ 181 (311) .- -.=+==|-.|++++..+.+........+.+.+.+++.+- ++...+..| .| ..|.-.. T Consensus 90 ~~---~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~--~lGm~~T~f--------~n--------~~Gl~~~ 148 (262) T 1es5_A 90 YG---LMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT--NLGLHNTHF--------DS--------FDGIGNG 148 (262) T ss_dssp HH---HHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHH--HTTCSSCBC--------SS--------SSCCSCT T ss_pred HH---HHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCC--------CC--------CCCCCCC T ss_conf 99---998615699999998538986321209999999999999--837865543--------04--------6765445 Q ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 9899999999873000079999999999825 Q gi|254780186|r 182 KIEDVLKFYFHQCSLMMNCVQLAKSGLYLAF 212 (311) Q Consensus 182 dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn 212 (311) -=..|++|||+++..+.. T Consensus 149 -------------~n~sTa~Dla~l~~~~l~ 166 (262) T 1es5_A 149 -------------ANYSTPRDLTKIASSAMK 166 (262) T ss_dssp -------------TCBBCHHHHHHHHHHHTT T ss_pred -------------CCCCCHHHHHHHHHHHCC T ss_conf -------------775899999999998512 No 52 >2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* Probab=76.01 E-value=3.6 Score=20.52 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEE--C----------CCCCCCCHHHHHHHHHH Q ss_conf 79999999999977607999998283320598247028998089978876--6----------87864019999999999 Q gi|254780186|r 3 LKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSV--G----------ESEFLFSIQSISKVFLL 70 (311) Q Consensus 3 ~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~--G----------D~~~~FsiqSisK~f~l 70 (311) ++..+++++++... ++.+ | .++|+| ..||+++.. | +.++.|.|-|+||+|+- T Consensus 8 l~~~vd~~i~~~~~---~~~~----p--------G~~v~v-~~~g~~~~~~~G~~~~~~~~p~t~dT~f~iaSvTK~~ta 71 (371) T 2wzx_A 8 LKALVDAAVQPVMK---ANDI----P--------GLAVAI-SLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTA 71 (371) T ss_dssp HHHHHHHHHHHHHH---HTTC----S--------EEEEEE-EETTEEEEEEEEBSCTTTCCBCCTTCEEECGGGHHHHHH T ss_pred HHHHHHHHHHHHHH---HCCC----C--------EEEEEE-EECCEEEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHH T ss_conf 99999999999998---4899----8--------499999-999999998487500566988999997963046899999 Q ss_pred HHHHH Q ss_conf 99996 Q gi|254780186|r 71 TIALR 75 (311) Q Consensus 71 ~~al~ 75 (311) .+++. T Consensus 72 ~~i~~ 76 (371) T 2wzx_A 72 TLAGY 76 (371) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 53 >3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A Probab=75.57 E-value=1.6 Score=22.87 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=24.4 Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHH Q ss_conf 0007999999999982597077788755189999775 Q gi|254780186|r 196 LMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCV 232 (311) Q Consensus 196 i~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v 232 (311) +-.|+.||++.+..|-|+| +++++++.++.. T Consensus 291 l~STa~Dlakf~~~ll~~g------~~lLs~~tv~~m 321 (432) T 3hlc_A 291 VFSSPGSYMKVLHSLLKRD------GLLLQPQTVDLM 321 (432) T ss_dssp CEECHHHHHHHHHHHHHTC------SSSSCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCC------CCCCCHHHHHHH T ss_conf 6477999999999998438------875899999998 No 54 >2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A* Probab=75.48 E-value=4 Score=20.18 Aligned_cols=31 Identities=6% Similarity=-0.135 Sum_probs=23.4 Q ss_pred HHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHH Q ss_conf 300007999999999982597077788755189999775 Q gi|254780186|r 194 CSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCV 232 (311) Q Consensus 194 Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v 232 (311) =.+-.|++||++.+..|.|++ +++++..+.. T Consensus 243 ggl~sta~Dla~~~~~l~~g~--------~l~~~~~~~m 273 (363) T 2drw_A 243 GDMVSTPRDIVKFLNALFDGR--------ILDQKRLWEM 273 (363) T ss_dssp TCEEECHHHHHHHHHHHHTTS--------SSCHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCCC--------CCCHHHHHHH T ss_conf 521189999999999986899--------7899999999 No 55 >1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A* Probab=75.14 E-value=0.86 Score=24.53 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=41.1 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC Q ss_conf 98730000799999999998259707778875518999977554454113312566789870787156522 Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVG 261 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVg 261 (311) .-+=++.+|..++|.+.++|||+|. .+++++++.++.+|...--. | ..+-+|+|-+ T Consensus 145 ~~~g~~~vTPlq~a~~~~~ian~g~-------~~s~~~~~~~~~~m~~~~~~---G-----~~vagKTGTa 200 (255) T 1xkz_A 145 WMEDSLKISNLEQVIVFKNMMEQNN-------HFSKKAKNQLSSSLLIKKNE---K-----YELYGKTGTG 200 (255) T ss_dssp TTTSSCCEEHHHHHHHHHHHHHCC--------CSCHHHHHHHHHHHEEEECS---S-----EEEEEEEEEE T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHC---C-----CHHHCCCCCE T ss_conf 4379753549999999999970996-------66888999999999988755---8-----5000201221 No 56 >2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ... Probab=74.97 E-value=2.6 Score=21.47 Aligned_cols=30 Identities=3% Similarity=-0.123 Sum_probs=21.7 Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 87300007999999999982597077788755 Q gi|254780186|r 192 HQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSV 223 (311) Q Consensus 192 ~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~v 223 (311) -...+..|++||++.+..+.|+|. ..++++ T Consensus 216 ~~ggl~st~~D~ak~~~~~l~~~~--~~~~~~ 245 (358) T 2ffy_A 216 EAYGVKSTIEDMARWVQSNLKPLD--INEKTL 245 (358) T ss_dssp HHTCCEECHHHHHHHHHHHHCGGG--CSSHHH T ss_pred CCCCEECCHHHHHHHHHHHHCCCC--CCHHHH T ss_conf 777411589999999999848998--887899 No 57 >1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A* Probab=74.68 E-value=3.8 Score=20.36 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEE-EECCCCEE-E--EC----------CCCCCCCHHHHHHHHH Q ss_conf 999999999997760799999828332059824702899-80899788-7--66----------8786401999999999 Q gi|254780186|r 4 KKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSL-ALEDGTVY-S--VG----------ESEFLFSIQSISKVFL 69 (311) Q Consensus 4 ~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai-~t~dG~~~-~--~G----------D~~~~FsiqSisK~f~ 69 (311) .+.|++++++.. .++++ | |+++ +..||++. . .| +.++.|.|.|++|+|+ T Consensus 19 ~a~ld~~~~~~~---~~~~~----p----------G~~v~V~~~G~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvtK~~t 81 (392) T 1ci9_A 19 AARLDAVFDQAL---RERRL----V----------GAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIV 81 (392) T ss_dssp HHHHHHHHHHHH---HTTSC----S----------EEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHH T ss_pred HHHHHHHHHHHH---HCCCC----C----------EEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHH T ss_conf 999999999999---80898----6----------499999999999999847651445599899998797131799999 Q ss_pred HHHHHHH Q ss_conf 9999961 Q gi|254780186|r 70 LTIALRK 76 (311) Q Consensus 70 l~~al~~ 76 (311) -.+++.. T Consensus 82 a~~i~~L 88 (392) T 1ci9_A 82 ALAVLRL 88 (392) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 58 >2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* Probab=74.32 E-value=1.7 Score=22.66 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=41.6 Q ss_pred HHCCCHH-HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHH Q ss_conf 2059824-7028998089-97887668786401999999999999996112-89999 Q gi|254780186|r 30 LAKVRID-HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEIWK 83 (311) Q Consensus 30 La~vdp~-~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V~~ 83 (311) |.++++. .+||.|.+.+ |+..-.=..+++|.--|+.|.|+-+.||+.+| +.-|+ T Consensus 8 ~~~~p~~~~~~i~v~dl~~g~~l~~~n~~~~~~PAS~~Kl~Tt~aAL~~LGpd~rf~ 64 (458) T 2ex2_A 8 ITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFT 64 (458) T ss_dssp HTTSCTTCEEEEEEEETTCSSCSEEESTTSCBCCGGGHHHHHHHHHHHHTCTTCCCE T ss_pred HHHCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 851878885899999899998888867998658689999999999998609986699 No 59 >1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A* Probab=72.52 E-value=3.4 Score=20.64 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=41.5 Q ss_pred HHCEEEEEEC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHH Q ss_conf 4702899808-997887668786401999999999999996112-89999 Q gi|254780186|r 36 DHFGMSLALE-DGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEIWK 83 (311) Q Consensus 36 ~~fgiai~t~-dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V~~ 83 (311) ..+||.|.+. +|++.-.-+.+.+|.--|+.|.|+-+.||+.+| +.-|+ T Consensus 21 a~~gi~V~d~~tG~~l~s~n~~~~~~PAS~~KL~Tt~aAL~~LG~d~rf~ 70 (489) T 1w79_A 21 AVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVLGADHSFG 70 (489) T ss_dssp CEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHTCTTCEEE T ss_pred CEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 75899999899999977728998658679999999999998619997688 No 60 >1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1 Probab=71.34 E-value=2.1 Score=21.97 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=24.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH--CC----HHHHHHHCCCC Q ss_conf 87864019999999999999961--12----89999946576 Q gi|254780186|r 54 ESEFLFSIQSISKVFLLTIALRK--FD----EEIWKRVGREP 89 (311) Q Consensus 54 D~~~~FsiqSisK~f~l~~al~~--~G----~~V~~~VG~eP 89 (311) +.++.|.|-||||.|+-.+++.. .| +.|.+++-.-| T Consensus 53 t~~T~f~iaSvSK~fTa~~vl~Lve~G~lLddpv~~ylP~~~ 94 (520) T 1ei5_A 53 TLDTRMPICSVSKQFTCAVLLDAVGEPELLDDALEAYLDKFE 94 (520) T ss_dssp CTTCCEECGGGHHHHHHHHHHHHTCSGGGGHHHHHHHTTTCC T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC T ss_conf 999869717089999999999999749945681788684656 No 61 >2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A* Probab=69.83 E-value=3.3 Score=20.74 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=55.4 Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC------CEE Q ss_conf 98730000799999999998259707778875518999977554454113312566789870787156522------110 Q gi|254780186|r 191 FHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVG------GGI 264 (311) Q Consensus 191 f~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVg------Ggi 264 (311) +-+=++.+|..++|.+.+++||+|. .+++++++.+...|...-- .. +++..-+|.|-. |=. T Consensus 138 ~~~g~~~iTPlqma~~~~~ian~g~-------~~~p~~~~~~~~~~~~~~~----~~--~~~~~ktgTg~~~~~~~~aWF 204 (246) T 2iwb_A 138 WNESSLKISAIEQVNLLKNMKQHNM-------HFDNKAIEKVENSMTLKQK----DT--YKYVGKTGTGIVNHKEANGWF 204 (246) T ss_dssp TSSSSCCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEEEEC----SS--EEEEEEEEEEEETTEEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHH----HH--HHHHHCCCCCCCCCCCCCEEE T ss_conf 2268752569999999999983896-------7883255677777777654----23--443211010446898878899 Q ss_pred EEEECCC---CEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCC Q ss_conf 3343785---179987532077--89848999999999999486 Q gi|254780186|r 265 LAIVPSK---ASIAVWSPGLDN--SGNSLLGAKALELLAIRTGW 303 (311) Q Consensus 265 lavvPg~---~gIav~SP~LD~--~GNSv~G~~~le~ls~~l~l 303 (311) ++-+|-. ..++|+ ++. ..++-.+..+.+.+-+++++ T Consensus 205 vGf~p~~~p~~~~~v~---v~~~~~~~~~~A~pi~~~Il~~l~i 245 (246) T 2iwb_A 205 VGYVETKDNTYYFATH---LKGEDNANGEKAQQISERILKEMEL 245 (246) T ss_dssp EEEEEESSCEEEEEEE---EECSSCBCHHHHHHHHHHHHHHTTC T ss_pred EEEEECCCCEEEEEEE---EECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 9999889995999999---9789988747899999999997168 No 62 >3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* Probab=67.32 E-value=2.9 Score=21.10 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=40.5 Q ss_pred HCEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHH Q ss_conf 7028998089-97887668786401999999999999996112-89999 Q gi|254780186|r 37 HFGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EEIWK 83 (311) Q Consensus 37 ~fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~V~~ 83 (311) .+||.|.+.+ |++.-.=+.+.+|.--|+.|.|+-+.||+.+| +.-|+ T Consensus 16 ~~gi~v~d~~tg~~l~~~n~~~~~~PAS~~Kl~Ta~aAL~~LGpd~rf~ 64 (453) T 3a3d_A 16 NAGVIAKNINQNQIIADYNGSTFMLPASTQKVFTAVAAKLALGDQFQFE 64 (453) T ss_dssp EEEEEEEETTTTEEEEEESTTSCBCCGGGGHHHHHHHHHHHTCTTCCCE T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 6899999899998998868998758689999999999999629997388 No 63 >2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis} Probab=66.35 E-value=4.1 Score=20.15 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=33.5 Q ss_pred EEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 28998089-97887668786401999999999999996112 Q gi|254780186|r 39 GMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 39 giai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) +..+.+.| |++.-.=+.+.++++-|++|.++..++++... T Consensus 21 saiv~D~~tG~iL~~kn~d~~~~pASlTKlMTa~v~le~~~ 61 (276) T 2bcf_A 21 TWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD 61 (276) T ss_dssp EEEEEETTTCEEEEEESTTCCBCCGGGHHHHHHHHHHHHCC T ss_pred EEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 89999999998900049299827389999999999998347 No 64 >1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A* Probab=66.07 E-value=3.1 Score=20.93 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=41.8 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHH---HHC--CCCCCCCCC---EE Q ss_conf 7300007999999999982597077788755189999775544541133125667898---707--871565221---10 Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAY---RVG--FPGKSGVGG---GI 264 (311) Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~---~VG--lPaKSGVgG---gi 264 (311) ...+-.|++||++.+..|.|+ ++++++..+........-..+.+.--|.. .-| +-.++|-.+ .. T Consensus 237 aggl~st~~Dl~~~~~~l~~g--------~~l~~~~~~~~~~~~~~~~~~~yGlG~~~~~~~~g~~~~~H~G~~~G~~s~ 308 (349) T 1yqs_A 237 AGAVISSTQDLDTFFSALMSG--------QLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTY 308 (349) T ss_dssp GTCCEECHHHHHHHHHHHHTT--------CSSCHHHHHHHTCCEEEETTEEECSSCEEEECTTSCEEEEEEEEETTEEEE T ss_pred CCCCCCCHHHHHHHHHHHHCC--------CCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCEEE T ss_conf 764106899999999998669--------989999999974660589998637899874058996699826747872399 Q ss_pred EEEECCC-CEEEEEC Q ss_conf 3343785-1799875 Q gi|254780186|r 265 LAIVPSK-ASIAVWS 278 (311) Q Consensus 265 lavvPg~-~gIav~S 278 (311) +.+.|.. .+|.+.+ T Consensus 309 ~~~~p~~~~~vv~l~ 323 (349) T 1yqs_A 309 AFASKDGKRSVTALA 323 (349) T ss_dssp EEECTTSSEEEEEEE T ss_pred EEEEECCCEEEEEEE T ss_conf 999977998999999 No 65 >3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 2cbl_A* 1b47_A Probab=64.62 E-value=4.4 Score=19.94 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=55.9 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHH--HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 9999999872899862478999985112412--79999999827888899899999999873000079999999999825 Q gi|254780186|r 135 NFLNFMRGIAGDASIHIDSVVANSEIETGYR--NFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAF 212 (311) Q Consensus 135 ~i~~~~~~lag~~~i~~d~~v~~SE~~t~~r--N~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn 212 (311) .-.+||++-+|++.+ +-=+.|+....+-+. --.-+-.||+. +|+ .|+=-|+..+.-+.--.+ T Consensus 163 ~A~eFWk~~FG~r~i-VpW~~F~~~L~~~h~v~sg~ea~aLK~T----------IDl---Tcd~~VSifeFdvFtr~F-- 226 (329) T 3bux_B 163 DAAEFWRKAFGEKTI-VPWKSFRQALHEVHPISSGLEAMALKST----------IDL---TCNDYISVFEFDIFTRLF-- 226 (329) T ss_dssp HHHHHHHHHHTTCSE-EEHHHHHHHHHHHSCCCCHHHHHHHHHH----------HCT---TCSSEEEHHHHHHHHHHT-- T ss_pred HHHHHHHHHCCCCEE-EECHHHHHHHHHHCCCCCCHHHHHHHHC----------CCC---CCCCCEEEECCCHHHHCC-- T ss_conf 699999975899716-4009999999986588998788522222----------676---557832132141233047-- Q ss_pred CCCCCCCCCEECCHHHHHHHHHH-HHHCC-----CCHHHHHHHHHHCCCCCCCCCCEEEEE---ECCCCEEEEECCC Q ss_conf 97077788755189999775544-54113-----312566789870787156522110334---3785179987532 Q gi|254780186|r 213 RGYNSLTNQSVISPLQSRCVNAV-MLTCG-----HYDHSGDFAYRVGFPGKSGVGGGILAI---VPSKASIAVWSPG 280 (311) Q Consensus 213 ~G~~P~t~~~vi~~~~~~~v~s~-M~TcG-----mYd~SG~fa~~VGlPaKSGVgGgilav---vPg~~gIav~SP~ 280 (311) -|++. .-+..+.+ ..-|| -||++.....+-- -| .|--|.-- -||+.+|+..++. T Consensus 227 ---gPw~t-------lL~nw~~lav~hpgy~aFLTydEvk~rLq~~~--~k--PGSYIfRfScTrlGqwAIgyV~~~ 289 (329) T 3bux_B 227 ---QPWSS-------LLRNWNSLAVTHPGYMAFLTYDEVKARLQKFI--HK--PGSYIFRLSCTRLGQWAIGYVTAD 289 (329) T ss_dssp ---CCGGG-------HHHHHHHHTTSCTTBCTTCCHHHHHHHHGGGT--TS--TTEEEEEECSSSTTSEEEEEECTT T ss_pred ---CCHHH-------HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHC--CC--CCCEEEEECCCCCCCEEEEEECCC T ss_conf ---75287-------88779999860551036533899999999853--59--972799712686784589998689 No 66 >3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis} Probab=62.71 E-value=8.1 Score=18.22 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=47.3 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHC-------CCCHHHHH-HHHH------HCCCCCC Q ss_conf 73000079999999999825970777887551899997755445411-------33125667-8987------0787156 Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC-------GHYDHSGD-FAYR------VGFPGKS 258 (311) Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~Tc-------GmYd~SG~-fa~~------VGlPaKS 258 (311) -..+-.|++|||+.+..+-|+|. +.+++++++++..........+ |..+.=|- |.+. .++-.|+ T Consensus 226 agg~~st~~Dla~f~~~~l~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yGlGw~~~~~~~~~~~~~~h~ 303 (351) T 3ozh_A 226 SGGIYSTPEDMQHWMQQFLASDN--SAPKRSAKREQALYFQRGDLVSLKGMDVAGQADALGLGWVYMAPKADLPGIMQKT 303 (351) T ss_dssp TTCCEECHHHHHHHHHTTSCBTT--BCCCTTHHHHTCEEEEGGGSSEEESCCTTSCCSEEESSCEEECCBTTBCCEEEEE T ss_pred CCCCCCCHHHHHHHHHHHHCCCC--CCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEC T ss_conf 65542789999999999956999--8713335799999762577556677666888686466248545678886268506 Q ss_pred CCC---CEEEEEECC-CCEEEEECCC Q ss_conf 522---110334378-5179987532 Q gi|254780186|r 259 GVG---GGILAIVPS-KASIAVWSPG 280 (311) Q Consensus 259 GVg---GgilavvPg-~~gIav~SP~ 280 (311) |-. |..+.++|. ..+|.+.+=. T Consensus 304 g~~~g~~s~~~~~p~~~~~ivvl~N~ 329 (351) T 3ozh_A 304 GGGGGFITYMAMVPEKNIGVFVVVTR 329 (351) T ss_dssp EEETTEEEEEEEEGGGTEEEEEEEEC T ss_pred CCCCCCEEEEEEEECCCCEEEEEECC T ss_conf 77753369999997899599999818 No 67 >3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A* Probab=61.66 E-value=8.4 Score=18.10 Aligned_cols=102 Identities=13% Similarity=-0.054 Sum_probs=58.9 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC--- Q ss_conf 99999987300007999999999982597077788755189999775544541133125667898707871565221--- Q gi|254780186|r 186 VLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGG--- 262 (311) Q Consensus 186 ~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVgG--- 262 (311) .++.++.+-++.+|..+++.+.+.+||+|. .++++.++.++..|..-..-+ . .-+-+|+|.+. T Consensus 133 ~~~~~~~~g~~~iTPlq~a~~~~~ian~~~-------~~~~~~~~~i~~~m~~~~~~~---g----~~vaGKTGTa~~~~ 198 (251) T 3isg_A 133 GLTEAWLESSLKISPEEQIQFLRKIINHNL-------PVKNSAIENTIENMYLQDLDN---S----TKLYGKTGAGFTAN 198 (251) T ss_dssp HHHHTTSSSSCCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEEEECTT---S----CEEEEEEEEEECTT T ss_pred CCCCCEECCCEEECHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHEECC---C----CCCEEEECCCCCCC T ss_conf 556631147601459999999999983993-------138589999999975623326---6----42136637754789 Q ss_pred -E-----EEEEECC----CCEEEEECCCCCCCCCCHHHHHH---HHHHHHHHC Q ss_conf -1-----0334378----51799875320778984899999---999999948 Q gi|254780186|r 263 -G-----ILAIVPS----KASIAVWSPGLDNSGNSLLGAKA---LELLAIRTG 302 (311) Q Consensus 263 -g-----ilavvPg----~~gIav~SP~LD~~GNSv~G~~~---le~ls~~l~ 302 (311) + .++-+|- +.-+++. -.-+..+++..+..+ ...+-+.++ T Consensus 199 ~~~~~~WFvGy~p~~~~~~~~~~v~-~~~~~~~~~~~~~~a~~i~~~il~~l~ 250 (251) T 3isg_A 199 RTLQNGWFEGFIISKSGHKYVFVSA-LTGNLGSNLTSSIKAKKNAITILNTLN 250 (251) T ss_dssp SSCEEEEEEEEEECTTCCEEEEEEE-EEECCTTSCCHHHHHHHHHHHHHHHHT T ss_pred CCCCEEEEEEEEECCCCCEEEEEEE-EECCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9985399999987489988999999-817977762347999999999998757 No 68 >3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens} Probab=51.27 E-value=9.3 Score=17.81 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=10.4 Q ss_pred HHHHHHHHCCCCCCCCHHHHHH Q ss_conf 9999987289986247899998 Q gi|254780186|r 137 LNFMRGIAGDASIHIDSVVANS 158 (311) Q Consensus 137 ~~~~~~lag~~~i~~d~~v~~S 158 (311) .+||++-+|++ ..+-=..|+. T Consensus 150 ~~FW~~~fG~r-~iVpW~~F~~ 170 (323) T 3op0_A 150 HTFWRESCGAR-CVLPWAEFES 170 (323) T ss_dssp HHHHHHHHTTC-SEEEHHHHHH T ss_pred HHHHHHHCCCC-EEEEHHHHHH T ss_conf 99999757996-5875699999 No 69 >3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* Probab=50.05 E-value=13 Score=16.88 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=34.6 Q ss_pred CEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 0289980899788766878640199999999999999611 Q gi|254780186|r 38 FGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 38 fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) -+|.+-...|++.-.=+.+.++++-|++|+++..++++.. T Consensus 72 sail~da~tG~iLy~KN~d~~~~pASlTKlMTa~l~le~i 111 (453) T 3hun_A 72 TSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAV 111 (453) T ss_dssp SEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHH T ss_pred EEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 1799998999493357849885844999999999999998 No 70 >1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Probab=49.64 E-value=13 Score=16.84 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=32.8 Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 289980899788766878640199999999999999611 Q gi|254780186|r 39 GMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 39 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) ++-+....|+++-.=+.+.++++-|++|+++..++++.. T Consensus 37 ~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~ 75 (369) T 1tvf_A 37 SAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAV 75 (369) T ss_dssp EEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHH T ss_pred EEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 699997899294267809982878999999999999988 No 71 >3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A* Probab=48.76 E-value=14 Score=16.75 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=33.3 Q ss_pred CEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 02899808997887668786401999999999999996112 Q gi|254780186|r 38 FGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 38 fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) -++.+-...|+++-.=+.+.+.++-|++|+++..++++... T Consensus 15 aaiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~~e~i~ 55 (352) T 3ita_A 15 AWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALK 55 (352) T ss_dssp EEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999997963259099862289999999999999876 No 72 >1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A Probab=48.41 E-value=13 Score=16.80 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=32.0 Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 289980899788766878640199999999999999611 Q gi|254780186|r 39 GMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 39 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) +|.+-...|+++-.=+.+.++++-|++|+++..++++.. T Consensus 20 aiv~d~~tG~iL~~kn~~~~~~~ASlTKlMTa~v~le~i 58 (363) T 1z6f_A 20 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAM 58 (363) T ss_dssp EEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999890006909981868999999999999998 No 73 >1fbv_A Signal transduction protein CBL; CBL, ZAP-70, phosphorylation, tyrosine kinase, ubiquitination, protein degradation,, ligase; HET: PTR; 2.90A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 g.44.1.1 PDB: 2k4d_A Probab=47.78 E-value=12 Score=17.01 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=57.0 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 9999999872899862478999985112--41279999999827888899899999999873000079999999999825 Q gi|254780186|r 135 NFLNFMRGIAGDASIHIDSVVANSEIET--GYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAF 212 (311) Q Consensus 135 ~i~~~~~~lag~~~i~~d~~v~~SE~~t--~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn 212 (311) .-.+||++-+|++.+ +-=+.|.....+ +..--.-+-.||+. +|+ .|+=-|+..+..+.--.+ T Consensus 139 ~A~eFWk~~fG~r~i-VpW~~F~~~L~~~h~v~s~~~a~aLK~T----------IDl---Tcd~~VSifeFdvFtr~F-- 202 (388) T 1fbv_A 139 DAAEFWRKAFGEKTI-VPWKSFRQALHEVHPISSGLEAMALKST----------IDL---TCNDYISVFEFDIFTRLF-- 202 (388) T ss_dssp HHHHHHHHHHTTCSE-EEHHHHHHHHHHHSCCCSHHHHHHHHHH----------HCT---TCSSEEEHHHHHHHHHHT-- T ss_pred HHHHHHHHHCCCCEE-ECCHHHHHHHHHHCCCCCCHHHHHHHHC----------CCC---CCCCCEEEECCCHHHCCC-- T ss_conf 799999975899658-7119999999985688997788656641----------475---347731021242022057-- Q ss_pred CCCCCCCCCEECCHHHHHHHHHH-HHHCC-----CCHHHHHHHHHHCCCCCCCCCCEEEEE---ECCCCEEEEECCC Q ss_conf 97077788755189999775544-54113-----312566789870787156522110334---3785179987532 Q gi|254780186|r 213 RGYNSLTNQSVISPLQSRCVNAV-MLTCG-----HYDHSGDFAYRVGFPGKSGVGGGILAI---VPSKASIAVWSPG 280 (311) Q Consensus 213 ~G~~P~t~~~vi~~~~~~~v~s~-M~TcG-----mYd~SG~fa~~VGlPaKSGVgGgilav---vPg~~gIav~SP~ 280 (311) -|++. .-+..+.+ ..-+| -||++.....+-+- | .|--|+-. -||+..|+..+.- T Consensus 203 ---qPw~t-------lL~nw~~lav~hpgy~gFLTydEvk~rLq~~~~--k--pGSYIfRfScT~lGqwAIsyV~~~ 265 (388) T 1fbv_A 203 ---QPWSS-------LLRNWNSLAVTHPGYMAFLTYDEVKARLQKFIH--K--PGSYIFRLSCTRLGQWAIGYVTAD 265 (388) T ss_dssp ---CCGGG-------HHHHHHHHTTSCTTBCSSCCHHHHHHHHGGGTT--S--TTEEEEEECSSSTTSEEEEEECTT T ss_pred ---CCHHH-------HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHC--C--CCCEEEEECCCCCCCEEEEEECCC T ss_conf ---76287-------877799998605612687338999999998505--8--970899851575773699998789 No 74 >3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} Probab=42.67 E-value=17 Score=16.15 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=31.6 Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 289980899788766878640199999999999999611 Q gi|254780186|r 39 GMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 39 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) +|.+-...|+++-.=+.+.+.++-|++|+++..++++.. T Consensus 12 aiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~l~~i 50 (344) T 3a3j_A 12 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVAL 50 (344) T ss_dssp EEEEETTTCCEEEEESTTSCBCCGGGHHHHHHHHHHHHH T ss_pred EEEEECCCCCEEHEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999690206909888539999999999999999 No 75 >3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis} Probab=40.81 E-value=18 Score=15.97 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.9 Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 2899808997887668786401999999999999996112 Q gi|254780186|r 39 GMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD 78 (311) Q Consensus 39 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G 78 (311) +|.+-...|++.-.=+.+.+.++-|++|.++..++++..- T Consensus 12 aiv~D~~tG~iL~~kn~~~~~~pASlTKlmT~~v~le~~~ 51 (334) T 3mfd_A 12 AIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK 51 (334) T ss_dssp EEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHHTTC T ss_pred EEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 9999999998902069099895688999999999995889 No 76 >1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1 Probab=38.13 E-value=17 Score=16.04 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=32.3 Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 289980899788766878640199999999999999611 Q gi|254780186|r 39 GMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF 77 (311) Q Consensus 39 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~ 77 (311) +|-+-...|+++-.=+.+.+.++-|++|+++..++++.. T Consensus 17 aiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~le~i 55 (379) T 1xp4_A 17 AIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEAL 55 (379) T ss_dssp EEEEETTTTEEEEEESCSSCEECGGGGHHHHHHHHHHHH T ss_pred EEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999791455909988788999999999999998 No 77 >2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A* Probab=26.99 E-value=16 Score=16.37 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=6.4 Q ss_pred HHCCCCCCCCCH Q ss_conf 946576567720 Q gi|254780186|r 84 RVGREPSGSSFD 95 (311) Q Consensus 84 ~VG~ePSg~~FN 95 (311) ..+..|....|| T Consensus 83 ~~~~~~~~~~f~ 94 (299) T 2ciw_A 83 VTGSDCGDSLVN 94 (299) T ss_dssp HHSSCCTTSEEE T ss_pred CCCCCCCCCCCC T ss_conf 457899987116 No 78 >2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, alternative splicing, ATP-binding; NMR {Homo sapiens} Probab=25.48 E-value=32 Score=14.34 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=53.9 Q ss_pred HHHHHHHHHHHHHHHCC-HHH--HHH-HCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999999996112-899--999-46576567720444201148984763111379999986448888899999999 Q gi|254780186|r 62 QSISKVFLLTIALRKFD-EEI--WKR-VGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFL 137 (311) Q Consensus 62 qSisK~f~l~~al~~~G-~~V--~~~-VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~ 137 (311) -|-++-|.|.-.|++++ ++. |++ ...++....| ...|+..+=+|..+-+++++......+..++..+ T Consensus 4 ~s~~~~~~L~~~LE~L~~~Elk~FK~~L~~~~l~~~~---------~~Ip~~~le~ad~~dLAdlLv~~y~e~~A~~vti 74 (106) T 2km6_A 4 TSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVL---------QKTPWSEVEEADGKKLAEILVNTSSENWIRNATV 74 (106) T ss_dssp CSHHHHHHHHHHHHHSCTTHHHHHHHHHTTSCCCTTG---------GGCCHHHHHHCCTHHHHHHHHHHSCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCC---------CCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHH T ss_conf 5201066499999872799999999997544200268---------9999899965899999999999888889999999 Q ss_pred HHHHHH Q ss_conf 999987 Q gi|254780186|r 138 NFMRGI 143 (311) Q Consensus 138 ~~~~~l 143 (311) +.++++ T Consensus 75 ~il~~m 80 (106) T 2km6_A 75 NILEEM 80 (106) T ss_dssp HHHHHT T ss_pred HHHHHC T ss_conf 999986 No 79 >1chk_A Chitosanase, endochitosanase; anti-fungal protein, hydrolase, O-glycosyl, hydrolase (O- glycosyl); 2.40A {Streptomyces SP} SCOP: d.2.1.7 Probab=25.40 E-value=21 Score=15.46 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=22.6 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 9999986448888899999999999987289986247899998 Q gi|254780186|r 116 AIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANS 158 (311) Q Consensus 116 AI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~S 158 (311) ++.-|.+-.|.....+.|..|+....+-++.+.-.-||.-|.. T Consensus 142 v~yDt~V~HG~g~~~~sf~~ir~ra~~~a~~pa~ggdE~~~l~ 184 (238) T 1chk_A 142 AYYDAIVMHGPGNDPTSFGGIRKTAMKKARTPAQGGDETTYLN 184 (238) T ss_dssp HHHHHHHHHCSSSSTTSHHHHHHHHHHHSCCGGGTCCHHHHHH T ss_pred EEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 2533002208987526689999999860489888878999999 No 80 >1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Probab=20.08 E-value=18 Score=15.98 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=5.8 Q ss_pred CCCCCHHHHHHH Q ss_conf 476311137999 Q gi|254780186|r 107 PRNPFVNAGAIV 118 (311) Q Consensus 107 P~NPmiNAGAI~ 118 (311) +|.|+-+.-||. T Consensus 86 ~R~p~~~~~AIY 97 (159) T 1y9j_A 86 DRDPIRDVPAVY 97 (159) T ss_dssp CCCCBTTSCCEE T ss_pred CCCCCCCCCEEE T ss_conf 767788888899 Done!