HHSEARCH alignment of GI: 254780186 and SCOP domain: d1m40a_

Alignment
>d1m40a_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli, TEM-1 [TaxId: 562]}
Probab=95.76  E-value=0.07  Score=30.08  Aligned_cols=212  Identities=15%  Similarity=0.152  Sum_probs=105.0

Q ss_pred             CEEEEEECC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--H-HHHHHHCCCCCCCCCHH-HHHHHCCCCCCCCCCH
Q ss_conf             028998089-97887668786401999999999999996112--8-99999465765677204-4420114898476311
Q gi|254780186|r   38 FGMSLALED-GTVYSVGESEFLFSIQSISKVFLLTIALRKFD--E-EIWKRVGREPSGSSFDS-IVQLENENGIPRNPFV  112 (311)
Q Consensus        38 fgiai~t~d-G~~~~~GD~~~~FsiqSisK~f~l~~al~~~G--~-~V~~~VG~ePSg~~FNS-i~~Le~~~g~P~NPmi  112 (311)
                      .|+.+.+.+ |+++..-+.+.+|+..|+.|++++..+|++..  + ..-++|-..+......| +...  .   | +.-+
T Consensus        19 vgv~v~dl~tG~~l~s~n~d~~~p~AS~~Kl~~~~~~l~~v~~g~~~~~~~v~i~~~~~~~~s~~~~~--~---~-~~~~   92 (263)
T d1m40a_          19 VGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEK--H---L-TDGM   92 (263)
T ss_dssp             EEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGG--C---T-TTCE
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCC--C---C-CCCE
T ss_conf             99999999999696678899842466899999999999865348867785388646761268985114--6---8-8717


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHH----------HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             137999998644888889999999----------9999987289986247899998511241279999999827888899
Q gi|254780186|r  113 NAGAIVVSDAVLGSSSADDAIENF----------LNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYK  182 (311)
Q Consensus       113 NAGAI~~~sli~~~~~~~~~~~~i----------~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~d  182 (311)
                      .-.-++...++.+  + ....+.+          .++++++ |.....++....       +.        .  ....  
T Consensus        93 ~~~~ll~~mi~~S--d-N~A~~~L~~~~Gg~~~~~~~~~~~-g~~~~~~~~~~~-------~~--------~--~~~~--  149 (263)
T d1m40a_          93 TVRELCSAAITMS--D-NTAANLLLTTIGGPKELTAFLHNM-GDHVTRLDRWEP-------EL--------N--EAIP--  149 (263)
T ss_dssp             EHHHHHHHHHHSC--C-HHHHHHHHHHHTSHHHHHHHHHHT-TCSSCCCCCCTT-------GG--------G--CCCT--
T ss_pred             EHHHHHHHHHCCC--C-HHHHHHHHHHHCCHHHHHHHHHHH-CHHHHHHCCCCC-------CC--------C--CCCC--
T ss_conf             8999987876058--2-899999999856166899999983-546665058877-------55--------6--6778--


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC------C
Q ss_conf             8999999998730000799999999998259707778875518999977554454113312566789870787------1
Q gi|254780186|r  183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFP------G  256 (311)
Q Consensus       183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGlP------a  256 (311)
                               ....-..|.+|++++..-|..+        +.+++........+|......+.    ..+-++|      .
T Consensus       150 ---------~~~~~~tTa~d~a~l~~~l~~~--------~~l~~~~~~~~~~~~~~~~~~~~----~l~~~~p~~~~v~~  208 (263)
T d1m40a_         150 ---------NDERDTTTPAAMATTLRKLLTG--------ELLTLASRQQLIDWMEADKVAGP----LLRSALPAGWFIAD  208 (263)
T ss_dssp             ---------TCCTTEECHHHHHHHHHHHHHS--------TTSCHHHHHHHHHHHHCCSSCTT----TGGGGCCTTCEEEE
T ss_pred             ---------CCCCCEECHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCCCEEEEE
T ss_conf             ---------7555365599999999999868--------74478899999998736820771----24345788837886


Q ss_pred             CCCCCC----EEEEEE--CC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             565221----103343--78--5179987532077898489999999999994
Q gi|254780186|r  257 KSGVGG----GILAIV--PS--KASIAVWSPGLDNSGNSLLGAKALELLAIRT  301 (311)
Q Consensus       257 KSGVgG----gilavv--Pg--~~gIav~SP~LD~~GNSv~G~~~le~ls~~l  301 (311)
                      |+|-++    +..+++  ||  ...+++|...  ...+.-...+++..+++.+
T Consensus       209 KTG~~~~~~~~~~~~~~~~~~~~~i~vv~~~~--~~~~~~~~~~~i~~i~~~i  259 (263)
T d1m40a_         209 KSGAGERGSRGIIAALGPDGKPSRIVVIYTTG--SQATMDERNRQIAEIGASL  259 (263)
T ss_dssp             EEEECSTTCEEEEEEEESTTCCCEEEEEEEES--CCCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCEEEEEEEECCCCEEEEEEEEECC--CCCCHHHHHHHHHHHHHHH
T ss_conf             50557888747999998099829999998079--9889899999999999999


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Escherichia coli, TEM-1 [TaxId: 562]