HHSEARCH alignment of GI: 254780186 and SCOP domain: d2c5wb1

Alignment

Probab=96.54  E-value=0.0048  Score=37.64  Aligned_cols=104  Identities=19%  Similarity=0.181  Sum_probs=70.7

Q ss_pred             HHHHCCHHHHHHHHHHHHCCCCC-------------------CCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             30000799999999998259707-------------------77887551899997755445411331256678987078
Q gi|254780186|r  194 CSLMMNCVQLAKSGLYLAFRGYN-------------------SLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGF  254 (311)
Q Consensus       194 Csi~~t~~dLA~~~a~LAn~G~~-------------------P~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~VGl  254 (311)
                      =++.+|..+||.+.+++||+|+.                   +...+++++++++..+..+|...= -+.+|..++.-|.
T Consensus       209 g~~~~tplqla~aya~iAngG~~~~P~~i~~i~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv-~~GT~~~a~~~~~  287 (385)
T d2c5wb1         209 KKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVL-TYGTGRNAYLAWL  287 (385)
T ss_dssp             SSBSCCHHHHHHHHHHHHTTSEEECCBSEEEEEETTSCEEECCCCEEECSCHHHHHHHHHHHHHHH-HHSTTGGGCCTTC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
T ss_conf             852568999999887651476432214301221234442212345542047788888876411013-5775221356565


Q ss_pred             C--CCCCCC--------------------CEEEEEECCCCEEEEEC------CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7--156522--------------------11033437851799875------320778984899999999999
Q gi|254780186|r  255 P--GKSGVG--------------------GGILAIVPSKASIAVWS------PGLDNSGNSLLGAKALELLAI  299 (311)
Q Consensus       255 P--aKSGVg--------------------GgilavvPg~~gIav~S------P~LD~~GNSv~G~~~le~ls~  299 (311)
                      |  +|+|-+                    +=.++.-| +..++||=      .+....|-++++-.+-+.+..
T Consensus       288 ~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFvG~~P-~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~  359 (385)
T d2c5wb1         288 PQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTR-KYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTY  359 (385)
T ss_dssp             CCEEEEEECCCCHHHHHHTCCCSSCEESCEEEEEECS-SEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             3135655656666654444355642222059995599-88999999407888876887228899999999999

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 1a, transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]