RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus
Liberibacter asiaticus str. psy62]
(311 letters)
>gnl|CDD|32249 COG2066, GlsA, Glutaminase [Amino acid transport and metabolism].
Length = 309
Score = 394 bits (1013), Expect = e-110
Identities = 161/307 (52%), Positives = 214/307 (69%), Gaps = 2/307 (0%)
Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
D +K ++ I +P G G+VADYIP LAKV D FG+++ DG VYS G+++ FS
Sbjct: 4 SDDQKALEEIVRAARPLTGGGKVADYIPALAKVDPDLFGIAIVTVDGQVYSAGDADERFS 63
Query: 61 IQSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
IQSISKVF L +AL + +W+RVG EPSG F+S++QLE E G PRNP +NAGAI V
Sbjct: 64 IQSISKVFTLALALEDIGPDYVWQRVGAEPSGLPFNSVIQLELEGGKPRNPMINAGAIAV 123
Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
+ + G + AD+ E L F+RG+AGD + +D VA SE ET +RN A+A ++S+GN+
Sbjct: 124 ASLLPGRT-ADERWERILEFVRGLAGDRRLTLDEEVAQSERETAFRNRAIAYLLKSFGNL 182
Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
+ +E+ L YFHQC++ MNCV LA+ GL+LA G N LT + V+ Q+R +NA+MLTC
Sbjct: 183 EHDVEEALDVYFHQCAIEMNCVDLARLGLFLANGGVNPLTGERVVPADQARQINALMLTC 242
Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
G YD SG+FAYRVG P KSGVGGGI+A+VP + IAVWSP LD +GNS+ G ALE L+
Sbjct: 243 GMYDASGEFAYRVGLPAKSGVGGGIMAVVPGEMGIAVWSPALDEAGNSVAGIAALEQLSQ 302
Query: 300 RTGWSIF 306
+ G SIF
Sbjct: 303 QLGLSIF 309
>gnl|CDD|147236 pfam04960, Glutaminase, Glutaminase. This family of enzymes
deaminates glutamine to glutamate EC:3.5.1.2.
Length = 286
Score = 390 bits (1003), Expect = e-109
Identities = 156/287 (54%), Positives = 198/287 (68%), Gaps = 2/287 (0%)
Query: 21 GRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKF-DE 79
G+VADYIP LAKV D G+++ DG V+S G+++ FS+QSISKVF L +AL +E
Sbjct: 1 GKVADYIPALAKVDPDLLGIAVVTVDGQVHSAGDADEPFSLQSISKVFTLALALGDLGEE 60
Query: 80 EIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNF 139
+W RVG+EPSG F+SIVQLE E G PRNP +NAGAIVV+ + G +SA+ ++ L+F
Sbjct: 61 YVWSRVGKEPSGDPFNSIVQLETEKGKPRNPMINAGAIVVTSLLKGRTSAE-RLDFLLSF 119
Query: 140 MRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMN 199
+R +AG+ I D VA SE ET RN ALA +++SYGN + +E L YF QC+L M+
Sbjct: 120 VRKLAGNEEIGFDEEVAQSERETADRNRALAYYMKSYGNFPHDVEAALDLYFRQCALEMS 179
Query: 200 CVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSG 259
C LA G LA G N +T + V+SP +R + A+MLTCG YD SGDFAYRVG P KSG
Sbjct: 180 CEDLAVMGATLANGGVNPITGERVVSPDVARQILALMLTCGMYDASGDFAYRVGLPAKSG 239
Query: 260 VGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIF 306
VGGGILA+VP IAVWSP LD +GNS+ G ALE L+ R G SIF
Sbjct: 240 VGGGILAVVPGVMGIAVWSPALDEAGNSVAGVAALEKLSQRLGLSIF 286
>gnl|CDD|35726 KOG0506, KOG0506, KOG0506, Glutaminase (contains ankyrin repeat)
[Amino acid transport and metabolism].
Length = 622
Score = 215 bits (550), Expect = 9e-57
Identities = 106/289 (36%), Positives = 157/289 (54%), Gaps = 6/289 (2%)
Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66
ID I+E K + +G+VA YIP+LA+ D +G+S+ DG +S+G+++ F +QS+SK
Sbjct: 183 IDTIFESCK-ESSEGKVATYIPQLARQSPDLWGVSVCTVDGQRHSLGDTKKPFCLQSVSK 241
Query: 67 VFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLG 125
F I E + + VG+EPSG F+ I + N P NP VNAGAIVV+ +
Sbjct: 242 PFNYAIVASDLGTEVVHQYVGQEPSGRLFNEICL--DSNNKPHNPMVNAGAIVVTSLIKP 299
Query: 126 SSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE- 184
+ D + L R +AG+ + D+ SE ET RN+AL+ +++ + +
Sbjct: 300 KHNMADRFDFVLQQYRKMAGNEYVGFDNATFLSERETADRNYALSYYMKEKKCFPKETDL 359
Query: 185 -DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYD 243
D L YF CS+ + C A LA G +T + +SP R ++M +CG YD
Sbjct: 360 RDALDLYFQLCSIEVTCESAAVMAATLANGGVCPITGERCLSPRACRDTLSLMYSCGMYD 419
Query: 244 HSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAK 292
SG FA+ VG P KSGV G ++ +VP+ IA++SP LD GNS G
Sbjct: 420 FSGQFAFHVGLPAKSGVSGAMIVVVPNVMGIALYSPPLDKLGNSCRGVA 468
>gnl|CDD|34287 COG4669, EscJ, Type III secretory pathway, lipoprotein EscJ
[Intracellular trafficking and secretion].
Length = 246
Score = 32.2 bits (73), Expect = 0.20
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 92 SSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDA---------IENFLNFMRG 142
S F V++ N+NG+PR F G I D ++ S + + A +E L+ M G
Sbjct: 64 SDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLNYAKEQQLEQTLSKMDG 123
Query: 143 IAGDASIHI 151
+ A +HI
Sbjct: 124 VI-SARVHI 131
>gnl|CDD|110664 pfam01680, SOR_SNZ, SOR/SNZ family. Members of this family are
enzymes involved in a new pathway of
pyridoxine/pyridoxal 5-phosphate biosynthesis. This
family was formerly known as UPF0019.
Length = 209
Score = 31.6 bits (72), Expect = 0.28
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + LE V + ESE L
Sbjct: 73 IPVMAKVRIGHFVEAQILEAIGVDYIDESEVL 104
>gnl|CDD|73389 cd04727, pdxS, PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some metazoa.
Together with PdxT, PdxS forms the PLP synthase, a
heteromeric glutamine amidotransferase (GATase),
whereby PdxT produces ammonia from glutamine and PdxS
combines ammonia with five- and three-carbon
phosphosugars to form PLP. PLP is the biologically
active form of vitamin B6, an essential cofactor in
many biochemical processes. PdxS subunits form two
hexameric rings..
Length = 283
Score = 30.6 bits (69), Expect = 0.59
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + LE V + ESE L
Sbjct: 66 IPVMAKVRIGHFVEAQILEALGVDMIDESEVL 97
>gnl|CDD|30563 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme
metabolism].
Length = 296
Score = 30.2 bits (68), Expect = 0.72
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + LE V + ESE L
Sbjct: 78 IPVMAKVRIGHFVEAQILEALGVDMIDESEVL 109
>gnl|CDD|36819 KOG1606, KOG1606, KOG1606, Stationary phase-induced protein,
SOR/SNZ family [Coenzyme transport and metabolism].
Length = 296
Score = 28.8 bits (64), Expect = 2.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + LE V + ESE L
Sbjct: 79 IPVMAKVRIGHFVEAQILEALGVDYIDESEVL 110
>gnl|CDD|31620 COG1431, COG1431, Uncharacterized protein containing piwi/argonaute
domain [Translation, ribosomal structure and
biogenesis].
Length = 685
Score = 28.8 bits (64), Expect = 2.0
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 109 NPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNF- 167
N G +V ++ + + +L + + I +V +SE+ T ++
Sbjct: 303 NVDPEKGPDIVIGTEGKTTIDNVNLFCYLPYFKPDGTMLWNEISPIVTDSELLTRLKSTI 362
Query: 168 -ALANFVRSYGNIRYKIE 184
+ ++ I +K+E
Sbjct: 363 KKVVYGFKNSNGIDWKVE 380
>gnl|CDD|31430 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase
superfamily II [General function prediction only].
Length = 259
Score = 28.7 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 230 RCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILA 266
R ++AV+L+ GHYDH+G Y ++ G + A
Sbjct: 57 RDIDAVVLSHGHYDHTGGLPY---LLEENNPGIPVYA 90
>gnl|CDD|38953 KOG3749, KOG3749, KOG3749, Phosphoenolpyruvate carboxykinase
[Energy production and conversion].
Length = 640
Score = 26.9 bits (59), Expect = 6.8
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 262 GGILAIVPSKASIAVWSPGLDNSGNSLLGAKALEL-----LAIRTGW 303
++A P + I WS G GNSLLG K L LA GW
Sbjct: 234 RTLIAHKPDEREI--WSFGSGYGGNSLLGKKCFALRIASRLAKDEGW 278
>gnl|CDD|37660 KOG2449, KOG2449, KOG2449, Methylmalonate semialdehyde
dehydrogenase [Amino acid transport and metabolism,
Carbohydrate transport and metabolism].
Length = 157
Score = 26.9 bits (59), Expect = 7.9
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 31 AKVRIDHFGMSLALEDGT-VYSVGESEFLFSIQSISKVFLLTIALRKFDEEIWKRVGREP 89
KVRID S DG +Y G +E F +I V T + + EEI+ V
Sbjct: 37 PKVRIDKLIQSEDPLDGRFIYLPGYAEGNFVGPTILSV---TPNMSCYKEEIFGPVLVRL 93
Query: 90 SGSSFDSIVQLENENGIPRNPFVNAGAIVVSD 121
+ D + + N NP+ N AI S+
Sbjct: 94 ETETLDDAIFIINN-----NPYGNGTAIFTSN 120
>gnl|CDD|31465 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 26.8 bits (59), Expect = 8.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 276 VWSPGLDNSGNSLLGAKALEL-----LAIRTGW 303
VWS G GN+LLG K L L +A GW
Sbjct: 214 VWSFGSGYGGNALLGKKCLALRIASVMARDEGW 246
>gnl|CDD|35578 KOG0357, KOG0357, KOG0357, Chaperonin complex component, TCP-1
epsilon subunit (CCT5) [Posttranslational modification,
protein turnover, chaperones].
Length = 400
Score = 26.6 bits (58), Expect = 8.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 264 ILAIVPSKASIAVWSPGLDNSGNSLL-----------GAKALELLAIRTGWSI 305
I I + A++A+ G D+ N LL G +EL+AI TG I
Sbjct: 148 IQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRI 200
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,769,331
Number of extensions: 198094
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 19
Length of query: 311
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 217
Effective length of database: 4,232,491
Effective search space: 918450547
Effective search space used: 918450547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)