RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus
Liberibacter asiaticus str. psy62]
(311 letters)
>gnl|CDD|179191 PRK00971, PRK00971, glutaminase; Provisional.
Length = 307
Score = 481 bits (1241), Expect = e-137
Identities = 172/307 (56%), Positives = 225/307 (73%), Gaps = 2/307 (0%)
Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
M ++ I++ I EE++P IGQG+VADYIPELAKV + G+++ DG VYS G+++ FS
Sbjct: 2 MLMQAILEEILEEVRPLIGQGKVADYIPELAKVDPNKLGIAVCTVDGEVYSAGDADERFS 61
Query: 61 IQSISKVFLLTIALRKFDEE-IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
IQSISKVF L +AL+ + EE +W+RVG+EPSG F+S+VQLE E G PRNP +NAGAIVV
Sbjct: 62 IQSISKVFSLALALQHYGEEEVWQRVGKEPSGDPFNSLVQLELEQGKPRNPMINAGAIVV 121
Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
+D +L +++ E L F+R +AG+ I D VVA+SE+E RN A+A ++S+GNI
Sbjct: 122 TD-LLQGRLSEEPCERLLEFVRQLAGNPDILYDEVVASSELEHADRNAAIAYLMKSFGNI 180
Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
+E VL YFHQC+L M+CV LA++GL+LA G + T + V+SP Q+R VNA+MLTC
Sbjct: 181 ENDVETVLDTYFHQCALEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTC 240
Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
G YD SG+FAYRVG P KSGVGGGILA+VP + +IAVWSP LD GNSL G ALE L+
Sbjct: 241 GMYDASGEFAYRVGLPAKSGVGGGILAVVPGEMAIAVWSPELDAKGNSLAGTAALERLSQ 300
Query: 300 RTGWSIF 306
R G SIF
Sbjct: 301 RLGLSIF 307
>gnl|CDD|163526 TIGR03814, Gln_ase, glutaminase A. This family describes the
enzyme glutaminase, from a larger family that includes
serine-dependent beta-lactamases and penicillin-binding
proteins. Many bacteria have two isozymes. This model is
based on selected known glutaminases and their homologs
within prokaryotes, with the exclusion of highly-derived
(long branch) and architecturally varied homologs, so as
to achieve conservative assignments. A sharp drop in
scores occurs below 250, and cutoffs are set
accordingly. The enzyme converts glutamine to glutamate,
with the release of ammonia. Members tend to be
described as glutaminase A (glsA), where B (glsB) is
unknown and may not be homologous (as in Rhizobium
etli). Some species have two isozymes that may both be
designated A (GlsA1 and GlsA2).
Length = 300
Score = 458 bits (1181), Expect = e-130
Identities = 168/301 (55%), Positives = 218/301 (72%), Gaps = 2/301 (0%)
Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66
++ I EE +P G+G+VADYIP LAKV + FG+++ DG V+S G+++ FSIQSISK
Sbjct: 1 LEEIVEEARPLTGEGKVADYIPALAKVDPNQFGIAVVTLDGEVFSAGDADVPFSIQSISK 60
Query: 67 VFLLTIALRKFD-EEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLG 125
VF L +AL +E+W+RVG EPSG F+SIVQLE E G PRNPF+NAGAI V+ + G
Sbjct: 61 VFTLALALEDLGEDEVWERVGVEPSGDPFNSIVQLELEPGKPRNPFINAGAIAVTSLLPG 120
Query: 126 SSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIED 185
+S ++ +E L F+R +AG+ SI ID VA SE ETG+RN ALA ++S+GN+ +E+
Sbjct: 121 RTS-EEKLERILEFVRKLAGNRSISIDEEVAQSERETGFRNRALAYLLKSFGNLENDVEE 179
Query: 186 VLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHS 245
VL YF QCS+ M C LA++GL+LA G N LT + VIS +R +NA+MLTCG YD S
Sbjct: 180 VLDVYFKQCSIEMTCKDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDAS 239
Query: 246 GDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSI 305
G+FAYRVG P KSGVGGGILA+VP K IAV+SP LD +GNS+ G KALELL+ + G SI
Sbjct: 240 GEFAYRVGLPAKSGVGGGILAVVPGKMGIAVFSPALDAAGNSVAGQKALELLSEKLGLSI 299
Query: 306 F 306
F
Sbjct: 300 F 300
>gnl|CDD|183468 PRK12356, PRK12356, glutaminase; Reviewed.
Length = 319
Score = 253 bits (649), Expect = 4e-68
Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 8/309 (2%)
Query: 3 LKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQ 62
L++ +D Y + K G G+ ADYIP LA V D FG+++ DG VYS G+S++ F+I+
Sbjct: 10 LQQAVDQAYAQFKSDTG-GKNADYIPALANVPSDLFGVAVVTTDGQVYSAGDSDYRFAIE 68
Query: 63 SISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSD 121
SISKVF L +AL + + +++G +P+G F+S++ +E G P NP VNAGAI +
Sbjct: 69 SISKVFTLALALEDVGPQAVREKIGADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTS 128
Query: 122 AVLGSSSAD--DAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
V G++S + I L+ + AG + + V SE T + N A+A + SYG +
Sbjct: 129 LVPGANSDERWQRI---LDGQQRFAGRE-LALSDEVYQSEQTTNFHNRAIAWLLYSYGRL 184
Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
+ Y QCS ++ LA G LA G N LT + V+ + A M
Sbjct: 185 YCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTME 244
Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
G Y+ SGD+AY VG PGKSGVGGGILA+VP K IA +SP LD++GNS+ G KA+ +A
Sbjct: 245 GLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRGQKAVAYVAD 304
Query: 300 RTGWSIFDP 308
+ G ++F
Sbjct: 305 KLGLNLFKG 313
>gnl|CDD|183469 PRK12357, PRK12357, glutaminase; Reviewed.
Length = 326
Score = 219 bits (560), Expect = 7e-58
Identities = 111/307 (36%), Positives = 168/307 (54%), Gaps = 14/307 (4%)
Query: 12 EEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLT 71
+ +GR A YIP L ++ + G+ + DGT+ G+ E F++QSISKV
Sbjct: 22 AHYRTYAAEGRSASYIPALGEINVSQLGICIVKPDGTMIKSGDWEVPFTLQSISKVISFI 81
Query: 72 IA-LRKFDEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVLGSSSA 129
A L + + +RV EP+G +F+SI++LE ++ G P NP +NAGAI V+ ++L +S
Sbjct: 82 AACLSRGISYVLERVDVEPTGDAFNSIIRLEIHKPGKPFNPMINAGAITVA-SLLPGTSV 140
Query: 130 DDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKF 189
+ +E+ + + G I+ V SE ET +RN ALA +++ G + +E+ L+
Sbjct: 141 QEKLESLYVLIEKMIGKRP-AINEEVFQSEWETAHRNRALAYYLKETGFLESDVEETLEV 199
Query: 190 YFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFA 249
Y QCS+ + +A GL LA GY+ + + VI +R A+MLTCG Y+ SG FA
Sbjct: 200 YLKQCSIEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFA 259
Query: 250 YRVGFPGKSGVGGGILAIVPSKAS----------IAVWSPGLDNSGNSLLGAKALELLAI 299
VG P KSGV GGI+ +VP K+ I ++ P +D GNSL G L+ +A
Sbjct: 260 AFVGLPAKSGVSGGIMTLVPPKSRKDLPFQDGCGIGIYGPAIDEYGNSLPGIMLLKHIAK 319
Query: 300 RTGWSIF 306
SIF
Sbjct: 320 EWDLSIF 326
>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase
subunit Pdx1. This protein had been believed to be a
singlet oxygen resistance protein. Subsequent work
showed that it is a protein of pyridoxine (vitamin B6)
biosynthesis, and that pyridoxine quenches the highly
toxic singlet form of oxygen produced by light in the
presence of certain chemicals.
Length = 287
Score = 32.0 bits (73), Expect = 0.19
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + LE V + ESE L
Sbjct: 68 IPVMAKVRIGHFVEAQILEALGVDYIDESEVL 99
>gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional.
Length = 293
Score = 29.3 bits (67), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 5 KIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
K+I+ I + + IP +AK RI HF + LE V + ESE L
Sbjct: 64 KMIEEIMDAVS-----------IPVMAKARIGHFVEAQILEALGVDYIDESEVL 106
>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members
of this family have a perfect 4Fe-4S binding motif
C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
imperfect (the first Cys replaced by Ser) second copy.
Members probably bind two 4fe-4S iron-sulfur clusters.
Length = 432
Score = 27.5 bits (61), Expect = 4.2
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 16/53 (30%)
Query: 230 RCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLD 282
RC A C Y H G Y +PG G AVWSP L
Sbjct: 297 RC-GACQNECPVYRHIGGHWYGSIYPGPIG---------------AVWSPLLG 333
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 27.1 bits (60), Expect = 7.0
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 270 SKASIAVWSPGLDNSGNSLL-----------GAKALELLAIRTGWSI 305
S A+I + G D+ N LL G LEL+AI TG I
Sbjct: 290 SGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRI 336
>gnl|CDD|179087 PRK00685, PRK00685, metal-dependent hydrolase; Provisional.
Length = 228
Score = 26.7 bits (60), Expect = 7.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 232 VNAVMLTCGHYDHSGD 247
V+ ++LT GH DH GD
Sbjct: 41 VDYILLTHGHGDHLGD 56
>gnl|CDD|149731 pfam08761, dUTPase_2, dUTPase. 2-Deoxyuridine 5-triphosphate
nucleotidohydrolase (dUTPase) catalyses the hydrolysis
of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members
of this family have a novel all-alpha fold and are
unrelated to the all-beta fold found in dUTPases of the
majority of organisms. This family contains both dUTPase
homologues of dUTPase including dCTPase of phage T4.
Length = 167
Score = 26.6 bits (59), Expect = 8.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 37 HFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFDEE 80
HF +SL +E GT + L S + + + E
Sbjct: 79 HFLLSLGIELGTSNEIFI-AELISKDLNEQFLEIYALIEDLIEN 121
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,144,806
Number of extensions: 329888
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 16
Length of query: 311
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 218
Effective length of database: 3,984,929
Effective search space: 868714522
Effective search space used: 868714522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)