RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62] (311 letters) >gnl|CDD|179191 PRK00971, PRK00971, glutaminase; Provisional. Length = 307 Score = 481 bits (1241), Expect = e-137 Identities = 172/307 (56%), Positives = 225/307 (73%), Gaps = 2/307 (0%) Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60 M ++ I++ I EE++P IGQG+VADYIPELAKV + G+++ DG VYS G+++ FS Sbjct: 2 MLMQAILEEILEEVRPLIGQGKVADYIPELAKVDPNKLGIAVCTVDGEVYSAGDADERFS 61 Query: 61 IQSISKVFLLTIALRKFDEE-IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119 IQSISKVF L +AL+ + EE +W+RVG+EPSG F+S+VQLE E G PRNP +NAGAIVV Sbjct: 62 IQSISKVFSLALALQHYGEEEVWQRVGKEPSGDPFNSLVQLELEQGKPRNPMINAGAIVV 121 Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 +D +L +++ E L F+R +AG+ I D VVA+SE+E RN A+A ++S+GNI Sbjct: 122 TD-LLQGRLSEEPCERLLEFVRQLAGNPDILYDEVVASSELEHADRNAAIAYLMKSFGNI 180 Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 +E VL YFHQC+L M+CV LA++GL+LA G + T + V+SP Q+R VNA+MLTC Sbjct: 181 ENDVETVLDTYFHQCALEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTC 240 Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299 G YD SG+FAYRVG P KSGVGGGILA+VP + +IAVWSP LD GNSL G ALE L+ Sbjct: 241 GMYDASGEFAYRVGLPAKSGVGGGILAVVPGEMAIAVWSPELDAKGNSLAGTAALERLSQ 300 Query: 300 RTGWSIF 306 R G SIF Sbjct: 301 RLGLSIF 307 >gnl|CDD|163526 TIGR03814, Gln_ase, glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). Length = 300 Score = 458 bits (1181), Expect = e-130 Identities = 168/301 (55%), Positives = 218/301 (72%), Gaps = 2/301 (0%) Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66 ++ I EE +P G+G+VADYIP LAKV + FG+++ DG V+S G+++ FSIQSISK Sbjct: 1 LEEIVEEARPLTGEGKVADYIPALAKVDPNQFGIAVVTLDGEVFSAGDADVPFSIQSISK 60 Query: 67 VFLLTIALRKFD-EEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLG 125 VF L +AL +E+W+RVG EPSG F+SIVQLE E G PRNPF+NAGAI V+ + G Sbjct: 61 VFTLALALEDLGEDEVWERVGVEPSGDPFNSIVQLELEPGKPRNPFINAGAIAVTSLLPG 120 Query: 126 SSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIED 185 +S ++ +E L F+R +AG+ SI ID VA SE ETG+RN ALA ++S+GN+ +E+ Sbjct: 121 RTS-EEKLERILEFVRKLAGNRSISIDEEVAQSERETGFRNRALAYLLKSFGNLENDVEE 179 Query: 186 VLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHS 245 VL YF QCS+ M C LA++GL+LA G N LT + VIS +R +NA+MLTCG YD S Sbjct: 180 VLDVYFKQCSIEMTCKDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDAS 239 Query: 246 GDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSI 305 G+FAYRVG P KSGVGGGILA+VP K IAV+SP LD +GNS+ G KALELL+ + G SI Sbjct: 240 GEFAYRVGLPAKSGVGGGILAVVPGKMGIAVFSPALDAAGNSVAGQKALELLSEKLGLSI 299 Query: 306 F 306 F Sbjct: 300 F 300 >gnl|CDD|183468 PRK12356, PRK12356, glutaminase; Reviewed. Length = 319 Score = 253 bits (649), Expect = 4e-68 Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 8/309 (2%) Query: 3 LKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQ 62 L++ +D Y + K G G+ ADYIP LA V D FG+++ DG VYS G+S++ F+I+ Sbjct: 10 LQQAVDQAYAQFKSDTG-GKNADYIPALANVPSDLFGVAVVTTDGQVYSAGDSDYRFAIE 68 Query: 63 SISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSD 121 SISKVF L +AL + + +++G +P+G F+S++ +E G P NP VNAGAI + Sbjct: 69 SISKVFTLALALEDVGPQAVREKIGADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTS 128 Query: 122 AVLGSSSAD--DAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 V G++S + I L+ + AG + + V SE T + N A+A + SYG + Sbjct: 129 LVPGANSDERWQRI---LDGQQRFAGRE-LALSDEVYQSEQTTNFHNRAIAWLLYSYGRL 184 Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 + Y QCS ++ LA G LA G N LT + V+ + A M Sbjct: 185 YCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTME 244 Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299 G Y+ SGD+AY VG PGKSGVGGGILA+VP K IA +SP LD++GNS+ G KA+ +A Sbjct: 245 GLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRGQKAVAYVAD 304 Query: 300 RTGWSIFDP 308 + G ++F Sbjct: 305 KLGLNLFKG 313 >gnl|CDD|183469 PRK12357, PRK12357, glutaminase; Reviewed. Length = 326 Score = 219 bits (560), Expect = 7e-58 Identities = 111/307 (36%), Positives = 168/307 (54%), Gaps = 14/307 (4%) Query: 12 EEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLT 71 + +GR A YIP L ++ + G+ + DGT+ G+ E F++QSISKV Sbjct: 22 AHYRTYAAEGRSASYIPALGEINVSQLGICIVKPDGTMIKSGDWEVPFTLQSISKVISFI 81 Query: 72 IA-LRKFDEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVLGSSSA 129 A L + + +RV EP+G +F+SI++LE ++ G P NP +NAGAI V+ ++L +S Sbjct: 82 AACLSRGISYVLERVDVEPTGDAFNSIIRLEIHKPGKPFNPMINAGAITVA-SLLPGTSV 140 Query: 130 DDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKF 189 + +E+ + + G I+ V SE ET +RN ALA +++ G + +E+ L+ Sbjct: 141 QEKLESLYVLIEKMIGKRP-AINEEVFQSEWETAHRNRALAYYLKETGFLESDVEETLEV 199 Query: 190 YFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFA 249 Y QCS+ + +A GL LA GY+ + + VI +R A+MLTCG Y+ SG FA Sbjct: 200 YLKQCSIEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFA 259 Query: 250 YRVGFPGKSGVGGGILAIVPSKAS----------IAVWSPGLDNSGNSLLGAKALELLAI 299 VG P KSGV GGI+ +VP K+ I ++ P +D GNSL G L+ +A Sbjct: 260 AFVGLPAKSGVSGGIMTLVPPKSRKDLPFQDGCGIGIYGPAIDEYGNSLPGIMLLKHIAK 319 Query: 300 RTGWSIF 306 SIF Sbjct: 320 EWDLSIF 326 >gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. Length = 287 Score = 32.0 bits (73), Expect = 0.19 Identities = 16/32 (50%), Positives = 19/32 (59%) Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58 IP +AKVRI HF + LE V + ESE L Sbjct: 68 IPVMAKVRIGHFVEAQILEALGVDYIDESEVL 99 >gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional. Length = 293 Score = 29.3 bits (67), Expect = 1.4 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 11/54 (20%) Query: 5 KIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58 K+I+ I + + IP +AK RI HF + LE V + ESE L Sbjct: 64 KMIEEIMDAVS-----------IPVMAKARIGHFVEAQILEALGVDYIDESEVL 106 >gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. Length = 432 Score = 27.5 bits (61), Expect = 4.2 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 16/53 (30%) Query: 230 RCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLD 282 RC A C Y H G Y +PG G AVWSP L Sbjct: 297 RC-GACQNECPVYRHIGGHWYGSIYPGPIG---------------AVWSPLLG 333 >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 Score = 27.1 bits (60), Expect = 7.0 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 11/47 (23%) Query: 270 SKASIAVWSPGLDNSGNSLL-----------GAKALELLAIRTGWSI 305 S A+I + G D+ N LL G LEL+AI TG I Sbjct: 290 SGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRI 336 >gnl|CDD|179087 PRK00685, PRK00685, metal-dependent hydrolase; Provisional. Length = 228 Score = 26.7 bits (60), Expect = 7.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 232 VNAVMLTCGHYDHSGD 247 V+ ++LT GH DH GD Sbjct: 41 VDYILLTHGHGDHLGD 56 >gnl|CDD|149731 pfam08761, dUTPase_2, dUTPase. 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. Length = 167 Score = 26.6 bits (59), Expect = 8.5 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 37 HFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFDEE 80 HF +SL +E GT + L S + + + E Sbjct: 79 HFLLSLGIELGTSNEIFI-AELISKDLNEQFLEIYALIEDLIEN 121 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.403 Gapped Lambda K H 0.267 0.0838 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,144,806 Number of extensions: 329888 Number of successful extensions: 612 Number of sequences better than 10.0: 1 Number of HSP's gapped: 601 Number of HSP's successfully gapped: 16 Length of query: 311 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 218 Effective length of database: 3,984,929 Effective search space: 868714522 Effective search space used: 868714522 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.5 bits)