RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus
Liberibacter asiaticus str. psy62]
         (311 letters)



>3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase,
           SGC, structural genomics consortium, alternative
           splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo
           sapiens}
          Length = 315

 Score =  404 bits (1040), Expect = e-113
 Identities = 110/310 (35%), Positives = 163/310 (52%), Gaps = 6/310 (1%)

Query: 1   MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
           M     ID +YE  K Q G G+VADYIP+LAK   D +G+S+   DG  +S G+++  F 
Sbjct: 7   MSFTSHIDELYESAKKQSG-GKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFC 65

Query: 61  IQSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
           +QS  K     IA+     E + + VG+EPSG  F+ +   E+    P NP VNAGAIVV
Sbjct: 66  LQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNED--DKPHNPMVNAGAIVV 123

Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
           +  +    +  +  +  + F+  +AG+  +   +    SE E+G RNFA+  +++     
Sbjct: 124 TSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCF 183

Query: 180 RYK--IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVML 237
                +  +L FYF  CS+ + C   +     LA  G+  +T + V+SP   R   ++M 
Sbjct: 184 PEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMH 243

Query: 238 TCGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELL 297
           +CG YD SG FA+ VG P KSGV GGIL +VP+   +  WSP LD  GNS+ G      L
Sbjct: 244 SCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDL 303

Query: 298 AIRTGWSIFD 307
                +  +D
Sbjct: 304 VSLCNFHNYD 313


>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus}
           PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
          Length = 456

 Score =  394 bits (1013), Expect = e-110
 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)

Query: 2   DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61
            +   +  +  E+   +  G  A YIP LA+   D FG++LA   G ++  G+++  F+I
Sbjct: 4   PIPDYLASLVTELGA-VNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTI 62

Query: 62  QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120
           QS SK F    AL       + ++VG  PSG +F+ +  LE E+  P N  +NAGA+ V 
Sbjct: 63  QSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNEL-SLEAESHRPDNAMINAGALAVH 121

Query: 121 DAVLGS-SSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
             ++G  +S  + ++  +  M  +AG   + +D     SE+    RN +LA+ +RSYG +
Sbjct: 122 QLLVGPEASRKERLDRAVEIMSLLAGR-RLSVDWETYESEMAVSDRNLSLAHMLRSYGVL 180

Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
           +   E+++  Y  QC++++    LA  G  LA  G + +T + ++  + +R V +VM + 
Sbjct: 181 QDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSS 240

Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
           G YD +G +   VG P KSGV GG+L  +P +  I V+SP LD  GNS  G  A   L+ 
Sbjct: 241 GMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSE 300

Query: 300 RTGWSIFDPS 309
                + D  
Sbjct: 301 DFRLHLMDGD 310


>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
           structure initiative; 2.07A {Geobacillus kaustophilus
           HTA426}
          Length = 308

 Score =  390 bits (1004), Expect = e-109
 Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 2/307 (0%)

Query: 1   MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
           +  ++ +    EE K     G+VADYIP L K   +   +++   D  V S G+     +
Sbjct: 3   VYNQEELVRFVEEAKQYARYGKVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVT 62

Query: 61  IQSISKVFLLTIALRKFDEE-IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
           +QSISK+  L + L    E+ ++ +VG EP+   F SI +LE +   P NP +NAGA+VV
Sbjct: 63  LQSISKIIALALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEKPAKPLNPMINAGALVV 122

Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
           +  + G S   + +E  L F+R +AG+  I     VA SE ET + N +L  F++ +  I
Sbjct: 123 TSMIQGGS-VSERLERLLAFVRRLAGNERISYSDEVARSEFETAFLNRSLCYFLKQHRII 181

Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
              +E++++ Y  QC++ M C+ LA+ GL LA  G +  +++ ++    +R     M+TC
Sbjct: 182 DEDVEELMELYTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTC 241

Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
           G Y+ SG+FA +VG P KSGV GGILA VP +  I V+ P LD+ GNSL G K LE L+ 
Sbjct: 242 GMYNSSGEFAIKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTGVKLLERLSK 301

Query: 300 RTGWSIF 306
               SIF
Sbjct: 302 TYSLSIF 308


>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
           protein structure initiative, midwest center for
           structural genomics, MCSG; 1.61A {Escherichia coli}
           SCOP: e.3.1.2
          Length = 310

 Score =  382 bits (984), Expect = e-107
 Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 4/307 (1%)

Query: 2   DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61
            L++ +D  Y +    +  G+ ADYIP LA V      +++   DG VYS G+S++ F++
Sbjct: 6   KLQQAVDQAYTQFHS-LNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFAL 64

Query: 62  QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120
           +SISKV  L +AL     + +  ++G +P+G  F+S++ LE   G P +P VNAGAI  +
Sbjct: 65  ESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATT 124

Query: 121 DAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR 180
             ++ + + +   +  L+  + +AG+  + +   V  SE  T + N A+A  + S G + 
Sbjct: 125 S-LINAENVEQRWQRILHIQQQLAGE-QVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLY 182

Query: 181 YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCG 240
               +    Y  QCS ++N ++LA  G  LA  G N LT++ V+       + A M+  G
Sbjct: 183 CDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEG 242

Query: 241 HYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIR 300
            Y  SGD+AYRVG PGKSGVGGGILA+VP    IA +SP LD  GNS+ G K +  +A +
Sbjct: 243 LYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQ 302

Query: 301 TGWSIFD 307
            G+++F 
Sbjct: 303 LGYNVFK 309


>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
           subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A*
          Length = 330

 Score =  377 bits (970), Expect = e-105
 Identities = 110/312 (35%), Positives = 164/312 (52%), Gaps = 14/312 (4%)

Query: 7   IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66
           +    E  +P    G+ A+YIP L KV     G+ +   DGT+   G+    F++QSISK
Sbjct: 21  LHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISK 80

Query: 67  VFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVL 124
           V     A        +  RV  EP+G +F+SI++LE N+ G P NP +NAGA+ ++  + 
Sbjct: 81  VISFIAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILP 140

Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184
           G S A + +E   + M  + G     I   V  SE ET +RN ALA +++    +  ++E
Sbjct: 141 GES-AYEKLEFLYSVMETLIGK-RPRIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVE 198

Query: 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDH 244
           + L+ Y  QC++      +A  GL LA  GY+ + ++ VI    ++   A+MLTCG Y+ 
Sbjct: 199 ETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNA 258

Query: 245 SGDFAYRVGFPGKSGVGGGILAIVPSKA----------SIAVWSPGLDNSGNSLLGAKAL 294
           SG +A  VG P KSGV GGI+A+VP  A           I ++ P +D  GNSL G   L
Sbjct: 259 SGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL 318

Query: 295 ELLAIRTGWSIF 306
           + +A     SIF
Sbjct: 319 KHMAQEWELSIF 330


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 58/381 (15%), Positives = 101/381 (26%), Gaps = 174/381 (45%)

Query: 41  SLALEDGTVYSVGESEFLFSIQSISKVFLLTIALR-KFDEEIWKRVGREPSGSSFDSIVQ 99
            L L  G++      E +  +   +  F+ +  L+ +F++ +      EP+    +    
Sbjct: 8   PLTLSHGSL------EHVLLV-PTASFFIAS-QLQEQFNKIL-----PEPT----EGFAA 50

Query: 100 LENENGIPRNP------FVNAGAIVVSDAV--LGSSSADDAIENFLN-----FMRGIAGD 146
            ++E   P  P      F+      VS  V        D  +   L      ++ G    
Sbjct: 51  -DDE---PTTPAELVGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--- 99

Query: 147 ASIHIDSVVAN--SEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQC---------- 194
             IH  ++ A    E +T                   K ++++K Y              
Sbjct: 100 -DIH--ALAAKLLQENDTTLV----------------KTKELIKNYITARIMAKRPFDKK 140

Query: 195 --SLMMNCVQLAKSGLYLAFRG--------------YNSLTNQSVISPLQSRCVNAVML- 237
             S +   V    + L   F G              Y   T   ++  L      A  L 
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFS--AETLS 196

Query: 238 --------TCGHYDHSGD-------------------------------FA-YRV----- 252
                       +    +                                A Y V     
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256

Query: 253 GF-PGK-----SGVGG---GIL-AIVPSKASIAV---WSPGLDNSGNSLLGAKALELLAI 299
           GF PG+      G  G   G++ A+      IA    W     +        KA+ +L  
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVA-----IAETDSWESFFVSV------RKAITVL-F 304

Query: 300 RTGW---------SIFDPSVI 311
             G          S+  PS++
Sbjct: 305 FIGVRCYEAYPNTSL-PPSIL 324



 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 72/428 (16%), Positives = 121/428 (28%), Gaps = 203/428 (47%)

Query: 19  GQGRVADYIPELAKV----------------------------RIDHF--GMSLA--LED 46
           GQG   DY  EL  +                                F  G+++   LE+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221

Query: 47  GTVYSVGESEFLFSIQSISKVFLLTIALRKFDEEIWKRV-----GREP-------SGSSF 94
            +  +  + ++L SI  IS    L I + +        V     G  P        G++ 
Sbjct: 222 PS--NTPDKDYLLSI-PIS--CPL-IGVIQL---AHYVVTAKLLGFTPGELRSYLKGATG 272

Query: 95  DSIVQLENENGIPRNPFVNAGAIVVSD-----------AV------------------LG 125
            S  Q     G+     V A AI  +D           A+                  L 
Sbjct: 273 HS--Q-----GL-----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320

Query: 126 SSSADDAIEN-------FLNFMRGIAGDASI-----HIDSVVANSEI-ET---------G 163
            S  +D++EN        L+ +  +    +      +++    NS +            G
Sbjct: 321 PSILEDSLENNEGVPSPMLS-ISNL----TQEQVQDYVNKT--NSHLPAGKQVEISLVNG 373

Query: 164 YRNFALANFVRS-YG-----------------NIRY---KIEDVLKFY-----FHQCSLM 197
            +N  ++   +S YG                  I +   K++   +F      FH   L+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLL 432

Query: 198 MNCVQLAKSGL---YLAFRG-------YNSLTNQSVISPLQSRCVNAV-----MLTCGHY 242
           +    L    L    ++F         Y++         L+    +        +     
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCIIRLPV 488

Query: 243 D----------HSGDFAYRVGFPGK-SGVG--------G-GILAIVPSKASIAVWSPGLD 282
                      H  DF    G PG  SG+G        G G+  IV   A        LD
Sbjct: 489 KWETTTQFKATHILDF----G-PGGASGLGVLTHRNKDGTGVRVIV---AG------TLD 534

Query: 283 NSGNSLLG 290
            + +   G
Sbjct: 535 INPDDDYG 542



 Score = 33.0 bits (75), Expect = 0.082
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 50/144 (34%)

Query: 1    MDLKKIIDGI-YEEIKPQIGQGRVADYIP--ELAKVRIDHFGMSLALEDGTVYSVGESEF 57
            M ++ +++ + Y  +  Q+        +P  EL +    ++GM +A+  G V +      
Sbjct: 1777 MSIESLVEVVFYRGMTMQVA-------VPRDELGR---SNYGM-IAINPGRVAAS----- 1820

Query: 58   LFSIQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAI 117
             FS +++  V           E + KR G          +V++ N N +    +V AG +
Sbjct: 1821 -FSQEALQYVV----------ERVGKRTGW---------LVEIVNYN-VENQQYVAAGDL 1859

Query: 118  VVSDAVLGSSSADDAIENFLNFMR 141
                       A D + N LNF++
Sbjct: 1860 ----------RALDTVTNVLNFIK 1873



 Score = 29.5 bits (66), Expect = 1.0
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 73/188 (38%)

Query: 12  EEIKPQIG--QGRVADYIP--ELAKVRIDH--------F-------GMSLALEDGTVYSV 52
            + K   G  Q R    IP  E  K++  +        F          L  +D     +
Sbjct: 394 RKAKAPSGLDQSR----IPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKD-----L 443

Query: 53  GESEFLFSIQSISKVFLLTIALRKFDEEIWKRVG---REPSGSSFDSIVQLENENGIPRN 109
            ++   F+ +       + I +  +D       G   R  SGS  + IV       I R 
Sbjct: 444 VKNNVSFNAKD------IQIPV--YD----TFDGSDLRVLSGSISERIVDC-----IIRL 486

Query: 110 PFVNAGAIVVSDA--VL----GSSSADDAIENFLNFMR---GI----AGDASIHIDSVVA 156
           P V         A  +L    G +S    +    +  +   G+    AG     +D    
Sbjct: 487 P-VKWETTTQFKATHILDFGPGGAS---GLGVLTHRNKDGTGVRVIVAGT----LDI--- 535

Query: 157 NSEIETGY 164
           N + + G+
Sbjct: 536 NPDDDYGF 543



 Score = 29.5 bits (66), Expect = 1.1
 Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 77/221 (34%)

Query: 125  GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYR---NFALANFVRSYGNIRY 181
            G S  D  I N +N         +IH          E G R   N++ A    +  + + 
Sbjct: 1658 GFSILDIVINNPVNL--------TIHFGG-------EKGKRIRENYS-AMIFETIVDGKL 1701

Query: 182  KIEDVLK--------FYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSR-CV 232
            K E + K        + F     +++  Q  +  L        +L  ++    L+S+  +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--------TLMEKAAFEDLKSKGLI 1753

Query: 233  NAVMLTCGHYDHSGDFA-------------------YR-----VGFP----GKSGVGGGI 264
             A     GH    G++A                   YR     V  P    G+S  G  +
Sbjct: 1754 PADATFAGH--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG--M 1809

Query: 265  LAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSI 305
            +AI P + + +     L            +E +  RTGW +
Sbjct: 1810 IAINPGRVAASFSQEALQ---------YVVERVGKRTGWLV 1841


>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
           metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
           recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
           PDB: 2i7v_A
          Length = 459

 Score = 35.8 bits (81), Expect = 0.011
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 207 GLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILA 266
           G++    G ++L    +I P +   ++ ++++  H DH G   +   F  K+   G    
Sbjct: 42  GIHPGLEGMDALPYIDLIDPAE---IDLLLISHFHLDHCGALPW---FLQKTSFKGRTFM 95

Query: 267 IVPSKA 272
              +KA
Sbjct: 96  THATKA 101


>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics,
          PSI-2, protein structure initiative; 2.20A
          {Mycobacterium bovis}
          Length = 280

 Score = 30.5 bits (68), Expect = 0.55
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 46 DGTVYSVGESEFLFSIQSISKVFLLTIALRKFDE 79
           G + + G++  +F++ S++K  +   A    +E
Sbjct: 23 AGVLATHGDTARVFALASVTKPLVARAAQVAVEE 56


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.8 bits (66), Expect = 0.75
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%)

Query: 145  GDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYF--H----QCSLMM 198
            G AS H  S  AN + E+   N  + +  RS GN    +  V + +   H      + MM
Sbjct: 1338 GVASFHGTSTKANDKNESATINEMMKHLGRSEGN---PVIGVFQKFLTGHPKGAAGAWMM 1394

Query: 199  N-CVQLAKSGLYLAFRGYNSLTN-----QSVISP---LQSRCVNAVMLTCGHYDHSG 246
            N  +Q+  SG+    R  +++       + V+ P   L++  V AV +T   +   G
Sbjct: 1395 NGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKG 1451


>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
           processing, artemis, V(D)J recombination, double-strand
           break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
           d.157.1.10
          Length = 717

 Score = 28.5 bits (63), Expect = 1.8
 Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 232 VNAVMLTCGHYDHSGDFAYRV-GFPGKSGVGGGILAIVPSKA 272
           ++ ++L+    +  G  +     F         + A +P   
Sbjct: 54  IDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVIN 95


>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
           synthase, biosynthetic protein, transferase; 3.02A
           {Saccharomyces cerevisiae}
          Length = 297

 Score = 28.5 bits (64), Expect = 1.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 27  IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
           IP +AKVRI HF  +  +E   V  + ESE L
Sbjct: 75  IPVMAKVRIGHFVEAQIIEALEVDYIDESEVL 106


>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
           fold, structural genomics, NPPSFA; HET: FLC; 2.50A
           {Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
           3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
          Length = 431

 Score = 28.4 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 232 VNAVMLTCGHYDHSGDFAY--RVGFPGK 257
           V+AV+LT  H DH G      R G+ G 
Sbjct: 52  VDAVLLTHAHLDHVGRLPKLFREGYRGP 79


>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
           rossmann fold, alpha-aminoadipate pathway, fungal lysine
           biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
           2qrk_A* 2qrl_A* 2q99_A
          Length = 394

 Score = 27.8 bits (61), Expect = 3.1
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 70  LTIALRKFDEEIWKRVGREPSGSS------FDSIVQLENENGIPRNPFVNAGAIVVSDAV 123
           +T+ LR   + +  R    P+         F   V+   ++    N +  AGAI+V    
Sbjct: 25  VTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGS 84

Query: 124 LGSSSADDAI 133
             ++  D  I
Sbjct: 85  WKTAPRDRII 94


>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
           family, KH domain, ribonuclease, ME beta-lactamase
           superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
           3af6_A*
          Length = 651

 Score = 27.8 bits (61), Expect = 3.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 226 PLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSG 259
            L+   ++A+++T  H DH G   Y   +    G
Sbjct: 243 VLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDG 276


>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
          structural genomics, NPPSFA; 1.43A {Pyrococcus
          horikoshii OT3} PDB: 2z0c_A 3a4i_A
          Length = 308

 Score = 27.4 bits (60), Expect = 3.9
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 1  MDLKKIIDGIYEEIKPQIGQGRV 23
          MD  + ++    EI+  +G  + 
Sbjct: 1  MDWGRFVEEKVREIRETVGDSKA 23


>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase;
           2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
          Length = 305

 Score = 27.5 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 27  IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
           IP +AK RI H   +  LE   V  + ESE L
Sbjct: 79  IPVMAKARIGHIVEARVLEAMGVDYIDESEVL 110


>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
           {Escherichia coli} PDB: 2wym_A*
          Length = 360

 Score = 27.5 bits (60), Expect = 4.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 219 TNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR 251
           T   V+ P   R ++AV+ T  H DH       
Sbjct: 97  TTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAA 129


>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
           NAD binding domain, 37 amino acid insertional region;
           HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV}
           PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
          Length = 494

 Score = 27.2 bits (60), Expect = 5.0
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 116 AIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRS 175
           AI V+D+V   S  D+      + + GI       I           G      A  ++ 
Sbjct: 238 AINVNDSVT-KSKFDNKYGTRHSLIDGINRGTDALIGGKKVLI-CGYGDVGKGCAEAMKG 295

Query: 176 YGN--IRYKIEDV--LKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRC 231
            G      +I+ +  L+       ++     +  + + +   G   +     I  ++   
Sbjct: 296 QGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKD-- 353

Query: 232 VNAVMLTCGHYDHSGDFAY 250
            +A++   GH+D+  D A 
Sbjct: 354 -HAILGNIGHFDNEIDMAG 371


>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic
          resistance, hydrolase, periplasm; 2.26A {Pseudomonas
          fluorescens}
          Length = 358

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 18/81 (22%)

Query: 2  DLKKIIDGIYEEIKPQIGQGRVADYIPELA-------KVRIDHFGMSLALEDGTVYSVGE 54
          D+++++D     ++P + Q      I  L+       K +  ++G++   +     +   
Sbjct: 3  DIRQVVDST---VEPLMQQQD----IAGLSVAVIQNGKAQYFNYGVA-NKDSKQPIT--- 51

Query: 55 SEFLFSIQSISKVFLLTIALR 75
             LF I S+SK F  T+A  
Sbjct: 52 ENTLFEIGSVSKTFTATLAGY 72


>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis,
          beta-lactam, beta-sultam, sulfonylation, hydrolase;
          HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB:
          1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A*
          1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
          Length = 349

 Score = 27.1 bits (58), Expect = 6.0
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 13/59 (22%)

Query: 39 GMSLAL-EDGTVYSVG------------ESEFLFSIQSISKVFLLTIALRKFDEEIWKR 84
          G  + + ++GT++ +              +   F + S++K F   + L+  DE     
Sbjct: 25 GAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDL 83


>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
           d.157.1.10
          Length = 429

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 232 VNAVMLTCGHYDHSGDFAY 250
             AV L+  H DHS    Y
Sbjct: 85  HTAVFLSHAHLDHSRMINY 103


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,759,151
Number of extensions: 125323
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 33
Length of query: 311
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 219
Effective length of database: 3,462,782
Effective search space: 758349258
Effective search space used: 758349258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)