RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62] (311 letters) >3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens} Length = 315 Score = 404 bits (1040), Expect = e-113 Identities = 110/310 (35%), Positives = 163/310 (52%), Gaps = 6/310 (1%) Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60 M ID +YE K Q G G+VADYIP+LAK D +G+S+ DG +S G+++ F Sbjct: 7 MSFTSHIDELYESAKKQSG-GKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFC 65 Query: 61 IQSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119 +QS K IA+ E + + VG+EPSG F+ + E+ P NP VNAGAIVV Sbjct: 66 LQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNED--DKPHNPMVNAGAIVV 123 Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 + + + + + + F+ +AG+ + + SE E+G RNFA+ +++ Sbjct: 124 TSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCF 183 Query: 180 RYK--IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVML 237 + +L FYF CS+ + C + LA G+ +T + V+SP R ++M Sbjct: 184 PEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMH 243 Query: 238 TCGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELL 297 +CG YD SG FA+ VG P KSGV GGIL +VP+ + WSP LD GNS+ G L Sbjct: 244 SCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDL 303 Query: 298 AIRTGWSIFD 307 + +D Sbjct: 304 VSLCNFHNYD 313 >3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A Length = 456 Score = 394 bits (1013), Expect = e-110 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%) Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61 + + + E+ + G A YIP LA+ D FG++LA G ++ G+++ F+I Sbjct: 4 PIPDYLASLVTELGA-VNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTI 62 Query: 62 QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120 QS SK F AL + ++VG PSG +F+ + LE E+ P N +NAGA+ V Sbjct: 63 QSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNEL-SLEAESHRPDNAMINAGALAVH 121 Query: 121 DAVLGS-SSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 ++G +S + ++ + M +AG + +D SE+ RN +LA+ +RSYG + Sbjct: 122 QLLVGPEASRKERLDRAVEIMSLLAGR-RLSVDWETYESEMAVSDRNLSLAHMLRSYGVL 180 Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 + E+++ Y QC++++ LA G LA G + +T + ++ + +R V +VM + Sbjct: 181 QDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSS 240 Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299 G YD +G + VG P KSGV GG+L +P + I V+SP LD GNS G A L+ Sbjct: 241 GMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSE 300 Query: 300 RTGWSIFDPS 309 + D Sbjct: 301 DFRLHLMDGD 310 >2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426} Length = 308 Score = 390 bits (1004), Expect = e-109 Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 2/307 (0%) Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60 + ++ + EE K G+VADYIP L K + +++ D V S G+ + Sbjct: 3 VYNQEELVRFVEEAKQYARYGKVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVT 62 Query: 61 IQSISKVFLLTIALRKFDEE-IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119 +QSISK+ L + L E+ ++ +VG EP+ F SI +LE + P NP +NAGA+VV Sbjct: 63 LQSISKIIALALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEKPAKPLNPMINAGALVV 122 Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179 + + G S + +E L F+R +AG+ I VA SE ET + N +L F++ + I Sbjct: 123 TSMIQGGS-VSERLERLLAFVRRLAGNERISYSDEVARSEFETAFLNRSLCYFLKQHRII 181 Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239 +E++++ Y QC++ M C+ LA+ GL LA G + +++ ++ +R M+TC Sbjct: 182 DEDVEELMELYTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTC 241 Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299 G Y+ SG+FA +VG P KSGV GGILA VP + I V+ P LD+ GNSL G K LE L+ Sbjct: 242 GMYNSSGEFAIKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTGVKLLERLSK 301 Query: 300 RTGWSIF 306 SIF Sbjct: 302 TYSLSIF 308 >1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2 Length = 310 Score = 382 bits (984), Expect = e-107 Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 4/307 (1%) Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61 L++ +D Y + + G+ ADYIP LA V +++ DG VYS G+S++ F++ Sbjct: 6 KLQQAVDQAYTQFHS-LNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFAL 64 Query: 62 QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120 +SISKV L +AL + + ++G +P+G F+S++ LE G P +P VNAGAI + Sbjct: 65 ESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATT 124 Query: 121 DAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR 180 ++ + + + + L+ + +AG+ + + V SE T + N A+A + S G + Sbjct: 125 S-LINAENVEQRWQRILHIQQQLAGE-QVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLY 182 Query: 181 YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCG 240 + Y QCS ++N ++LA G LA G N LT++ V+ + A M+ G Sbjct: 183 CDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEG 242 Query: 241 HYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIR 300 Y SGD+AYRVG PGKSGVGGGILA+VP IA +SP LD GNS+ G K + +A + Sbjct: 243 LYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQ 302 Query: 301 TGWSIFD 307 G+++F Sbjct: 303 LGYNVFK 309 >1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* Length = 330 Score = 377 bits (970), Expect = e-105 Identities = 110/312 (35%), Positives = 164/312 (52%), Gaps = 14/312 (4%) Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66 + E +P G+ A+YIP L KV G+ + DGT+ G+ F++QSISK Sbjct: 21 LHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISK 80 Query: 67 VFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVL 124 V A + RV EP+G +F+SI++LE N+ G P NP +NAGA+ ++ + Sbjct: 81 VISFIAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILP 140 Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184 G S A + +E + M + G I V SE ET +RN ALA +++ + ++E Sbjct: 141 GES-AYEKLEFLYSVMETLIGK-RPRIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVE 198 Query: 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDH 244 + L+ Y QC++ +A GL LA GY+ + ++ VI ++ A+MLTCG Y+ Sbjct: 199 ETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNA 258 Query: 245 SGDFAYRVGFPGKSGVGGGILAIVPSKA----------SIAVWSPGLDNSGNSLLGAKAL 294 SG +A VG P KSGV GGI+A+VP A I ++ P +D GNSL G L Sbjct: 259 SGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL 318 Query: 295 ELLAIRTGWSIF 306 + +A SIF Sbjct: 319 KHMAQEWELSIF 330 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 62.3 bits (151), Expect = 1e-10 Identities = 58/381 (15%), Positives = 101/381 (26%), Gaps = 174/381 (45%) Query: 41 SLALEDGTVYSVGESEFLFSIQSISKVFLLTIALR-KFDEEIWKRVGREPSGSSFDSIVQ 99 L L G++ E + + + F+ + L+ +F++ + EP+ + Sbjct: 8 PLTLSHGSL------EHVLLV-PTASFFIAS-QLQEQFNKIL-----PEPT----EGFAA 50 Query: 100 LENENGIPRNP------FVNAGAIVVSDAV--LGSSSADDAIENFLN-----FMRGIAGD 146 ++E P P F+ VS V D + L ++ G Sbjct: 51 -DDE---PTTPAELVGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--- 99 Query: 147 ASIHIDSVVAN--SEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQC---------- 194 IH ++ A E +T K ++++K Y Sbjct: 100 -DIH--ALAAKLLQENDTTLV----------------KTKELIKNYITARIMAKRPFDKK 140 Query: 195 --SLMMNCVQLAKSGLYLAFRG--------------YNSLTNQSVISPLQSRCVNAVML- 237 S + V + L F G Y T ++ L A L Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFS--AETLS 196 Query: 238 --------TCGHYDHSGD-------------------------------FA-YRV----- 252 + + A Y V Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256 Query: 253 GF-PGK-----SGVGG---GIL-AIVPSKASIAV---WSPGLDNSGNSLLGAKALELLAI 299 GF PG+ G G G++ A+ IA W + KA+ +L Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVA-----IAETDSWESFFVSV------RKAITVL-F 304 Query: 300 RTGW---------SIFDPSVI 311 G S+ PS++ Sbjct: 305 FIGVRCYEAYPNTSL-PPSIL 324 Score = 52.6 bits (126), Expect = 1e-07 Identities = 72/428 (16%), Positives = 121/428 (28%), Gaps = 203/428 (47%) Query: 19 GQGRVADYIPELAKV----------------------------RIDHF--GMSLA--LED 46 GQG DY EL + F G+++ LE+ Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221 Query: 47 GTVYSVGESEFLFSIQSISKVFLLTIALRKFDEEIWKRV-----GREP-------SGSSF 94 + + + ++L SI IS L I + + V G P G++ Sbjct: 222 PS--NTPDKDYLLSI-PIS--CPL-IGVIQL---AHYVVTAKLLGFTPGELRSYLKGATG 272 Query: 95 DSIVQLENENGIPRNPFVNAGAIVVSD-----------AV------------------LG 125 S Q G+ V A AI +D A+ L Sbjct: 273 HS--Q-----GL-----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320 Query: 126 SSSADDAIEN-------FLNFMRGIAGDASI-----HIDSVVANSEI-ET---------G 163 S +D++EN L+ + + + +++ NS + G Sbjct: 321 PSILEDSLENNEGVPSPMLS-ISNL----TQEQVQDYVNKT--NSHLPAGKQVEISLVNG 373 Query: 164 YRNFALANFVRS-YG-----------------NIRY---KIEDVLKFY-----FHQCSLM 197 +N ++ +S YG I + K++ +F FH L+ Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLL 432 Query: 198 MNCVQLAKSGL---YLAFRG-------YNSLTNQSVISPLQSRCVNAV-----MLTCGHY 242 + L L ++F Y++ L+ + + Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCIIRLPV 488 Query: 243 D----------HSGDFAYRVGFPGK-SGVG--------G-GILAIVPSKASIAVWSPGLD 282 H DF G PG SG+G G G+ IV A LD Sbjct: 489 KWETTTQFKATHILDF----G-PGGASGLGVLTHRNKDGTGVRVIV---AG------TLD 534 Query: 283 NSGNSLLG 290 + + G Sbjct: 535 INPDDDYG 542 Score = 33.0 bits (75), Expect = 0.082 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 50/144 (34%) Query: 1 MDLKKIIDGI-YEEIKPQIGQGRVADYIP--ELAKVRIDHFGMSLALEDGTVYSVGESEF 57 M ++ +++ + Y + Q+ +P EL + ++GM +A+ G V + Sbjct: 1777 MSIESLVEVVFYRGMTMQVA-------VPRDELGR---SNYGM-IAINPGRVAAS----- 1820 Query: 58 LFSIQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAI 117 FS +++ V E + KR G +V++ N N + +V AG + Sbjct: 1821 -FSQEALQYVV----------ERVGKRTGW---------LVEIVNYN-VENQQYVAAGDL 1859 Query: 118 VVSDAVLGSSSADDAIENFLNFMR 141 A D + N LNF++ Sbjct: 1860 ----------RALDTVTNVLNFIK 1873 Score = 29.5 bits (66), Expect = 1.0 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 73/188 (38%) Query: 12 EEIKPQIG--QGRVADYIP--ELAKVRIDH--------F-------GMSLALEDGTVYSV 52 + K G Q R IP E K++ + F L +D + Sbjct: 394 RKAKAPSGLDQSR----IPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKD-----L 443 Query: 53 GESEFLFSIQSISKVFLLTIALRKFDEEIWKRVG---REPSGSSFDSIVQLENENGIPRN 109 ++ F+ + + I + +D G R SGS + IV I R Sbjct: 444 VKNNVSFNAKD------IQIPV--YD----TFDGSDLRVLSGSISERIVDC-----IIRL 486 Query: 110 PFVNAGAIVVSDA--VL----GSSSADDAIENFLNFMR---GI----AGDASIHIDSVVA 156 P V A +L G +S + + + G+ AG +D Sbjct: 487 P-VKWETTTQFKATHILDFGPGGAS---GLGVLTHRNKDGTGVRVIVAGT----LDI--- 535 Query: 157 NSEIETGY 164 N + + G+ Sbjct: 536 NPDDDYGF 543 Score = 29.5 bits (66), Expect = 1.1 Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 77/221 (34%) Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYR---NFALANFVRSYGNIRY 181 G S D I N +N +IH E G R N++ A + + + Sbjct: 1658 GFSILDIVINNPVNL--------TIHFGG-------EKGKRIRENYS-AMIFETIVDGKL 1701 Query: 182 KIEDVLK--------FYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSR-CV 232 K E + K + F +++ Q + L +L ++ L+S+ + Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--------TLMEKAAFEDLKSKGLI 1753 Query: 233 NAVMLTCGHYDHSGDFA-------------------YR-----VGFP----GKSGVGGGI 264 A GH G++A YR V P G+S G + Sbjct: 1754 PADATFAGH--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG--M 1809 Query: 265 LAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSI 305 +AI P + + + L +E + RTGW + Sbjct: 1810 IAINPGRVAASFSQEALQ---------YVVERVGKRTGWLV 1841 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Score = 35.8 bits (81), Expect = 0.011 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 207 GLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILA 266 G++ G ++L +I P + ++ ++++ H DH G + F K+ G Sbjct: 42 GIHPGLEGMDALPYIDLIDPAE---IDLLLISHFHLDHCGALPW---FLQKTSFKGRTFM 95 Query: 267 IVPSKA 272 +KA Sbjct: 96 THATKA 101 >3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Length = 280 Score = 30.5 bits (68), Expect = 0.55 Identities = 7/34 (20%), Positives = 18/34 (52%) Query: 46 DGTVYSVGESEFLFSIQSISKVFLLTIALRKFDE 79 G + + G++ +F++ S++K + A +E Sbjct: 23 AGVLATHGDTARVFALASVTKPLVARAAQVAVEE 56 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.8 bits (66), Expect = 0.75 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%) Query: 145 GDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYF--H----QCSLMM 198 G AS H S AN + E+ N + + RS GN + V + + H + MM Sbjct: 1338 GVASFHGTSTKANDKNESATINEMMKHLGRSEGN---PVIGVFQKFLTGHPKGAAGAWMM 1394 Query: 199 N-CVQLAKSGLYLAFRGYNSLTN-----QSVISP---LQSRCVNAVMLTCGHYDHSG 246 N +Q+ SG+ R +++ + V+ P L++ V AV +T + G Sbjct: 1395 NGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKG 1451 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Score = 28.5 bits (63), Expect = 1.8 Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%) Query: 232 VNAVMLTCGHYDHSGDFAYRV-GFPGKSGVGGGILAIVPSKA 272 ++ ++L+ + G + F + A +P Sbjct: 54 IDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVIN 95 >3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} Length = 297 Score = 28.5 bits (64), Expect = 1.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58 IP +AKVRI HF + +E V + ESE L Sbjct: 75 IPVMAKVRIGHFVEAQIIEALEVDYIDESEVL 106 >2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase fold, structural genomics, NPPSFA; HET: FLC; 2.50A {Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Score = 28.4 bits (62), Expect = 2.4 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 232 VNAVMLTCGHYDHSGDFAY--RVGFPGK 257 V+AV+LT H DH G R G+ G Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGP 79 >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A Length = 394 Score = 27.8 bits (61), Expect = 3.1 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 70 LTIALRKFDEEIWKRVGREPSGSS------FDSIVQLENENGIPRNPFVNAGAIVVSDAV 123 +T+ LR + + R P+ F V+ ++ N + AGAI+V Sbjct: 25 VTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGS 84 Query: 124 LGSSSADDAI 133 ++ D I Sbjct: 85 WKTAPRDRII 94 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Score = 27.8 bits (61), Expect = 3.5 Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 226 PLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSG 259 L+ ++A+++T H DH G Y + G Sbjct: 243 VLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDG 276 >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A Length = 308 Score = 27.4 bits (60), Expect = 3.9 Identities = 5/23 (21%), Positives = 11/23 (47%) Query: 1 MDLKKIIDGIYEEIKPQIGQGRV 23 MD + ++ EI+ +G + Sbjct: 1 MDWGRFVEEKVREIRETVGDSKA 23 >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Length = 305 Score = 27.5 bits (61), Expect = 4.5 Identities = 14/32 (43%), Positives = 17/32 (53%) Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58 IP +AK RI H + LE V + ESE L Sbjct: 79 IPVMAKARIGHIVEARVLEAMGVDYIDESEVL 110 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Length = 360 Score = 27.5 bits (60), Expect = 4.7 Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 219 TNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR 251 T V+ P R ++AV+ T H DH Sbjct: 97 TTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAA 129 >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding domain, 37 amino acid insertional region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494 Score = 27.2 bits (60), Expect = 5.0 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 9/139 (6%) Query: 116 AIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRS 175 AI V+D+V S D+ + + GI I G A ++ Sbjct: 238 AINVNDSVT-KSKFDNKYGTRHSLIDGINRGTDALIGGKKVLI-CGYGDVGKGCAEAMKG 295 Query: 176 YGN--IRYKIEDV--LKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRC 231 G +I+ + L+ ++ + + + + G + I ++ Sbjct: 296 QGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKD-- 353 Query: 232 VNAVMLTCGHYDHSGDFAY 250 +A++ GH+D+ D A Sbjct: 354 -HAILGNIGHFDNEIDMAG 371 >2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens} Length = 358 Score = 26.9 bits (58), Expect = 5.5 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 18/81 (22%) Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELA-------KVRIDHFGMSLALEDGTVYSVGE 54 D+++++D ++P + Q I L+ K + ++G++ + + Sbjct: 3 DIRQVVDST---VEPLMQQQD----IAGLSVAVIQNGKAQYFNYGVA-NKDSKQPIT--- 51 Query: 55 SEFLFSIQSISKVFLLTIALR 75 LF I S+SK F T+A Sbjct: 52 ENTLFEIGSVSKTFTATLAGY 72 >1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A* Length = 349 Score = 27.1 bits (58), Expect = 6.0 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 13/59 (22%) Query: 39 GMSLAL-EDGTVYSVG------------ESEFLFSIQSISKVFLLTIALRKFDEEIWKR 84 G + + ++GT++ + + F + S++K F + L+ DE Sbjct: 25 GAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDL 83 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Length = 429 Score = 26.9 bits (58), Expect = 6.5 Identities = 8/19 (42%), Positives = 9/19 (47%) Query: 232 VNAVMLTCGHYDHSGDFAY 250 AV L+ H DHS Y Sbjct: 85 HTAVFLSHAHLDHSRMINY 103 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.403 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,759,151 Number of extensions: 125323 Number of successful extensions: 358 Number of sequences better than 10.0: 1 Number of HSP's gapped: 340 Number of HSP's successfully gapped: 33 Length of query: 311 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 219 Effective length of database: 3,462,782 Effective search space: 758349258 Effective search space used: 758349258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.6 bits)